RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy16563
(259 letters)
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A
{Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A*
1tmk_A*
Length = 216
Score = 85.8 bits (213), Expect = 2e-20
Identities = 45/216 (20%), Positives = 76/216 (35%), Gaps = 42/216 (19%)
Query: 60 LIVFEGLDGCGKSHTSQTVAKKLKASLKST-------PPSSIMS--LRE-------KFDA 103
LI+ EGLD GK+ T L L+ S+ + + E +
Sbjct: 7 LILIEGLDRTGKT----TQCNILYKKLQPNCKLLKFPERSTRIGGLINEYLTDDSFQLSD 62
Query: 104 HDSLL----RRAYYSLGNYIAAQDIKQDLQK-QPVVMDRFWHSTSAYGMANELVKNSDLK 158
L R IK+DL + + +VMDR+ +S AY A
Sbjct: 63 QAIHLLFSANRW-------EIVDKIKKDLLEGKNIVMDRYVYSGVAYSAAKGT------- 108
Query: 159 LPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENE-LKK-NAKFRELL 216
+ D L+KPDL ++L+ + S + E + +K F +LL
Sbjct: 109 NGMDLDWCLQPDVGLLKPDLTLFLSTQDVDNNAEKSGFGDERYETVKFQEKVKQTFMKLL 168
Query: 217 TTIYRNMNNPELVFVDNSEKSVHESSNDIVELIHNL 252
+ + VD + K + E I +++ +
Sbjct: 169 DK-EIRKGDESITIVDVTNKGIQEVEALIWQIVEPV 203
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis,
ATP-binding, nucleotide-binding, poxvirus, transferase;
HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB:
2w0s_A*
Length = 204
Score = 79.3 bits (196), Expect = 3e-18
Identities = 42/213 (19%), Positives = 79/213 (37%), Gaps = 54/213 (25%)
Query: 60 LIVFEGLDGCGKSHTSQTVAKKLKASLKS-------TPPSS---------IMSLREKFDA 103
LIVFEGLD GK+ T + S+ + P S ++ ++ ++
Sbjct: 6 LIVFEGLDKSGKT----TQCMNIMESIPANTIKYLNFPQRSTVTGKMIDDYLTRKKTYND 61
Query: 104 HDSLL----RRAYYSLGNYIAAQDIKQDLQKQP-VVMDRFWHSTSAYGMANELVKNSDLK 158
H L R + A I++ L++ +++DR+ S AY A +
Sbjct: 62 HIVNLLFCANRWEF-------ASFIQEQLEQGITLIVDRYAFSGVAYAAAKGA----SMT 110
Query: 159 LPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFRELLTT 218
L S+ L KPDLVI+L + + E+ F++ +
Sbjct: 111 L------SKSYESGLPKPDLVIFLESGSKEINRNVGEEI---YEDVT------FQQKVLQ 155
Query: 219 IYRNM--NNPELVFVDNSEKSVHESSNDIVELI 249
Y+ M + +S + + ++++ I
Sbjct: 156 EYKKMIEEGDIHWQIISS-EFEEDVKKELIKNI 187
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP;
1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A*
2wwi_A*
Length = 212
Score = 79.2 bits (196), Expect = 4e-18
Identities = 51/219 (23%), Positives = 78/219 (35%), Gaps = 56/219 (25%)
Query: 60 LIVFEGLDGCGKSHTSQTVAKKLKASLKS-------------TPP-----SSIMSLREKF 101
IVFEGLD GKS T +K L LK+ S + +
Sbjct: 12 FIVFEGLDRSGKS----TQSKLLVEYLKNNNVEVKHLYFPNRETGIGQIISKYLKMENSM 67
Query: 102 DAH-DSLLRRAYYSLGNYIAA-----QDIKQDLQK-QPVVMDRFWHSTSAY-GMANELVK 153
LL + A +IK L K VV DR+ +S AY A L
Sbjct: 68 SNETIHLL---------FSANRWEHMNEIKSLLLKGIWVVCDRYAYSGVAYSSGALNL-- 116
Query: 154 NSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFR 213
+ + L+KPD+V YL V R + E+ E +K K
Sbjct: 117 --------NKTWCMNPDQGLIKPDVVFYLNVPPNYAQNRSDYGEEI-YEKVETQK--KIY 165
Query: 214 ELLTTIYRNMNNPELVFVDNSEKSVHESSNDIVELIHNL 252
E Y++ + + ++ + + + NDIV+ + +
Sbjct: 166 E----TYKHFAHEDYWINIDATRKIEDIHNDIVKEVTKI 200
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP
phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium
tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A*
1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A*
1w2h_A*
Length = 214
Score = 78.9 bits (195), Expect = 6e-18
Identities = 33/163 (20%), Positives = 57/163 (34%), Gaps = 33/163 (20%)
Query: 60 LIVFEGLDGCGKSHTSQTVAKKLKASLKS--------------TPPSSIMS---LREKFD 102
LI EG+DG GK T+ +KL + ++ ++ ++ L +
Sbjct: 2 LIAIEGVDGAGKR----TLVEKLSGAFRAAGRSVATLAFPRYGQSVAADIAAEALHGEHG 57
Query: 103 AHD------SLLRRAYYSLGNYIAAQDIKQDLQK-QPVVMDRFWHSTSAYGMANELVKNS 155
+ L ++L A I+ + V++DR+ S +AY A +
Sbjct: 58 DLASSVYAMATL----FALDRAGAVHTIQGLCRGYDVVILDRYVASNAAYSAARLHENAA 113
Query: 156 DLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKN 198
I L KPD + L VS + +R R
Sbjct: 114 GKAA-AWVQRIEFARLGLPKPDWQVLLAVSAELAGERSRGRAQ 155
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP,
transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP:
c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A*
1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A*
1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A*
1e9f_A*
Length = 215
Score = 76.5 bits (189), Expect = 4e-17
Identities = 47/219 (21%), Positives = 76/219 (34%), Gaps = 54/219 (24%)
Query: 60 LIVFEGLDGCGKSHTSQTVAKKLKASLKS-------------TPP-----SSIMSLREKF 101
LIV EG+D GKS T ++KL +L + + SS + +
Sbjct: 11 LIVLEGVDRAGKS----TQSRKLVEALCAAGHRAELLRFPERSTEIGKLLSSYLQKKSDV 66
Query: 102 DAHDSLL----RRAYYSLGNYIAAQDIKQDLQK-QPVVMDRFWHSTSAY-GMANELVKNS 155
+ H L R IK+ L + +V+DR+ S A+ G
Sbjct: 67 EDHSVHLLFSANRW-------EQVPLIKEKLSQGVTLVVDRYAFSGVAFTGAKENF---- 115
Query: 156 DLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFREL 215
D L KPDLV++L + A +R + E E N F+E
Sbjct: 116 ------SLDWCKQPDVGLPKPDLVLFLQLQLADAAKRGAFGH----ERYE---NGAFQER 162
Query: 216 LTTIYRNM--NNPELVFVDNSEKSVHESSNDIVELIHNL 252
+ + + + ++ KS+ DI L +
Sbjct: 163 ALRCFHQLMKDTTLNWKMVDASKSIEAVHEDIRVLSEDA 201
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding,
structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A
{Sulfolobus tokodaii}
Length = 213
Score = 75.8 bits (187), Expect = 9e-17
Identities = 43/226 (19%), Positives = 78/226 (34%), Gaps = 56/226 (24%)
Query: 60 LIVFEGLDGCGKSHTSQTVAKKLKASLKST--------PPSSIMS-------LREKFDAH 104
LI FEG+DG GKS + A LK ++ S + ++
Sbjct: 6 LIAFEGIDGSGKS----SQATLLKDWIELKRDVYLTEWNSSDWIHDIIKEAKKKDLLTPL 61
Query: 105 -DSLLRRAYYSLGNYIAA------QDIKQDLQK-QPVVMDRFWHSTSAYGMANELVKNSD 156
SL+ + + I L+ V+ DR+ ++ A +
Sbjct: 62 TFSLI---------HATDFSDRYERYILPMLKSGFIVISDRYIYTAYARDSVRGV----- 107
Query: 157 LKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKN----------FTLEENEL 206
+ D + +KPD+ Y+ VS I L+R+ + K +
Sbjct: 108 -----DIDWVKKLYSFAIKPDITFYIRVSPDIALERIKKSKRKIKPQEAGADIFPGLSPE 162
Query: 207 KKNAKFRELLTTIYRNMNNPELVFVDNSEKSVHESSNDIVELIHNL 252
+ K++ L+T +Y + E V + K+ E I + + L
Sbjct: 163 EGFLKYQGLITEVYDKLVKDENFIVIDGTKTPKEIQIQIRKFVGEL 208
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide
biosynthesis, TMP-binding, A binding, structural
genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Length = 195
Score = 72.9 bits (180), Expect = 6e-16
Identities = 49/215 (22%), Positives = 88/215 (40%), Gaps = 46/215 (21%)
Query: 60 LIVFEGLDGCGKSHTSQTVAKKLKASLKST-----PPSSIMS-------LREKFDAH-DS 106
LI FEG+DG GK+ ++ + + LK P + + L E+ D +
Sbjct: 2 LIAFEGIDGSGKTTQAKKLYEYLKQKGYFVSLYREPGGTKVGEVLREILLTEELDERTEL 61
Query: 107 LLRRAYYSLGNYIAA------QDIKQDLQK-QPVVMDRFWHSTSAY-GMANELVKNSDLK 158
LL + A+ + I DL++ + V++DRF ST AY G L
Sbjct: 62 LL---------FEASRSKLIEEKIIPDLKRDKVVILDRFVLSTIAYQGYGKGL------- 105
Query: 159 LPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFRELLTT 218
+ ++ + +KPD+ + L + I L+RL + F EN+ +F E +
Sbjct: 106 DVEFIKNLNEFATRGVKPDITLLLDIPVDIALRRLKEKNRF---ENK-----EFLEKVRK 157
Query: 219 IYRNM-NNPELVFVDNSEKSVHESSNDIVELIHNL 252
+ + E V V ++ E +I+ + +
Sbjct: 158 GFLELAKEEENVVVIDASGEEEEVFKEILRALSGV 192
>2ccj_A DTMP kinase, thymidylate kinase; transferase, nucleotide
biosynthesis, TMP-binding, ATP-binding; HET: TMP; 1.7A
{Staphylococcus aureus} PDB: 2cck_A 2ccg_A*
Length = 205
Score = 72.6 bits (179), Expect = 8e-16
Identities = 42/217 (19%), Positives = 80/217 (36%), Gaps = 43/217 (19%)
Query: 60 LIVFEGLDGCGKSHTSQTVAKKLKASLK--------STPPS----SIMSLREKFDAH-DS 106
I FEG +G GK+ V +L P I+ D ++
Sbjct: 4 FITFEGPEGSGKTTVINEVYHRLVKDYDVIMTREPGGVPTGEEIRKIVLEGNDMDIRTEA 63
Query: 107 LLRRAYYSLGNYIAA------QDIKQDLQK-QPVVMDRFWHSTSAY-GMANELVKNSDLK 158
+L + A+ + L++ + V+ DR+ S+ AY G A +
Sbjct: 64 ML---------FAASRREHLVLKVIPALKEGKVVLCDRYIDSSLAYQGYARGI------- 107
Query: 159 LPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQR-LSRRKNFTLEENELKKNAKFRELLT 217
+E + + + + PDL IYL VS + +R + ++ + E + KF E +
Sbjct: 108 GVEEVRALNEFAINGLYPDLTIYLNVSAEVGRERIIKNSRDQNRLDQE---DLKFHEKVI 164
Query: 218 TIYRNM--NNPELVFVDNSEKSVHESSNDIVELIHNL 252
Y+ + N + N+++ + D + I
Sbjct: 165 EGYQEIIHNESQRFKSVNADQPLENVVEDTYQTIIKY 201
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology,
midwest center for structu genomics, MCSG, MTBI,
transferase; HET: ATM; 1.85A {Staphylococcus aureus
subsp} PDB: 4dwj_A* 4f4i_A
Length = 229
Score = 73.1 bits (180), Expect = 1e-15
Identities = 42/217 (19%), Positives = 80/217 (36%), Gaps = 43/217 (19%)
Query: 60 LIVFEGLDGCGKSHTSQTVAKKLKASLK--------STPPS----SIMSLREKFDAH-DS 106
I FEG +G GK+ V +L P I+ D ++
Sbjct: 28 FITFEGPEGSGKTTVINEVYHRLVKDYDVIMTREPGGVPTGEEIRKIVLEGNDMDIRTEA 87
Query: 107 LLRRAYYSLGNYIAA------QDIKQDLQK-QPVVMDRFWHSTSAY-GMANELVKNSDLK 158
+L + A+ + L++ + V+ DR+ S+ AY G A +
Sbjct: 88 ML---------FAASRREHLVLKVIPALKEGKVVLCDRYIDSSLAYQGYARGI------- 131
Query: 159 LPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQR-LSRRKNFTLEENELKKNAKFRELLT 217
+E + + + + PDL IYL VS + +R + ++ + E + KF E +
Sbjct: 132 GVEEVRALNEFAINGLYPDLTIYLNVSAEVGRERIIKNSRDQNRLDQE---DLKFHEKVI 188
Query: 218 TIYRNM--NNPELVFVDNSEKSVHESSNDIVELIHNL 252
Y+ + N + N+++ + D + I
Sbjct: 189 EGYQEIIHNESQRFKSVNADQPLENVVEDTYQTIIKY 225
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases,
center for structural genomics of infectious DISE
ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1
biovar eltor} PDB: 3n2i_A*
Length = 236
Score = 71.9 bits (177), Expect = 2e-15
Identities = 48/224 (21%), Positives = 78/224 (34%), Gaps = 54/224 (24%)
Query: 60 LIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLRE-------------------- 99
IV EGL+G GKS T + + +L+ I RE
Sbjct: 29 FIVIEGLEGAGKS----TAIQVVVETLQQNGIDHITRTREPGGTLLAEKLRALVKEEHPG 84
Query: 100 -KFDAH-DSLLRRAYYSLGNYIAA------QDIKQDLQK-QPVVMDRFWHSTSAY-GMAN 149
+ + LL AA IK L + + VV DR S+ AY G
Sbjct: 85 EELQDITELLL---------VYAARVQLVENVIKPALARGEWVVGDRHDMSSQAYQGGGR 135
Query: 150 ELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKN 209
++ P + KPDL +YL + + L+R R E +
Sbjct: 136 QI-------APSTMQSLKQTALGDFKPDLTLYLDIDPKLGLERARGRGELDRIEKM---D 185
Query: 210 AKFRELLTTIYRNM-NNPELVFVDNSEKSVHESSNDIVELIHNL 252
F E Y + N+ + V + ++ +S+ + + DI + +
Sbjct: 186 ISFFERARERYLELANSDDSVVMIDAAQSIEQVTADIRRALQDW 229
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase,
transferase; HET: T5A; 1.98A {Escherichia coli} SCOP:
c.37.1.1 PDB: 5tmp_A*
Length = 213
Score = 71.1 bits (175), Expect = 4e-15
Identities = 41/219 (18%), Positives = 72/219 (32%), Gaps = 42/219 (19%)
Query: 60 LIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLRE-----------------KFD 102
IV EGL+G GK+ T + +L+ ++ RE K
Sbjct: 5 YIVIEGLEGAGKT----TARNVVVETLEQLGIRDMVFTREPGGTQLAEKLRSLLLDIKSV 60
Query: 103 AHDSLLRRAYYSLGNYIAA------QDIKQDLQK-QPVVMDRFWHSTSAY-GMANELVKN 154
+ + +A + + AA IK L V+ DR ST AY G +
Sbjct: 61 GDEVITDKAEVLM--FYAARVQLVETVIKPALANGTWVIGDRHDLSTQAYQGGGRGI--- 115
Query: 155 SDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFRE 214
+ +PDL +YL V+ + L+R R E E + F
Sbjct: 116 ----DQHMLATLRDAVLGDFRPDLTLYLDVTPEVGLKRARARGELDRIEQE---SFDFFN 168
Query: 215 LLTTIYRNM-NNPELVFVDNSEKSVHESSNDIVELIHNL 252
Y + + + ++ + + + I + +
Sbjct: 169 RTRARYLELAAQDKSIHTIDATQPLEAVMDAIRTTVTHW 207
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology;
HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB:
4e5u_A* 4esh_A* 3uwk_A* 3uwo_A* 3uxm_A*
Length = 213
Score = 70.3 bits (173), Expect = 8e-15
Identities = 46/220 (20%), Positives = 73/220 (33%), Gaps = 47/220 (21%)
Query: 60 LIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIM-----------SLREKFDAHDSLL 108
+ EG +G GKS T L L+ + +RE LL
Sbjct: 8 FVTLEGPEGAGKS----TNRDYLAERLRERGIEVQLTREPGGTPLAERIRE------LLL 57
Query: 109 RRAYYSLGN------YIAA------QDIKQDLQK-QPVVMDRFWHSTSAY-GMANELVKN 154
+ + AA I+ L + V+ DRF +T AY G L
Sbjct: 58 APSDEPMAADTELLLMFAARAQHLAGVIRPALARGAVVLCDRFTDATYAYQGGGRGL--- 114
Query: 155 SDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFRE 214
+ S+ + ++PDL + + I L R + R E E + +F E
Sbjct: 115 ----PEARIAALESFVQGDLRPDLTLVFDLPVEIGLARAAARGRLDRFEQE---DRRFFE 167
Query: 215 LLTTIYRNM--NNPELVFVDNSEKSVHESSNDIVELIHNL 252
+ Y PE V ++ + E + L+ NL
Sbjct: 168 AVRQTYLQRAAQAPERYQVLDAGLPLAEVQAGLDRLLPNL 207
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide
biosynthesis, nucleotide-binding, transferase,
structural genomics, NPPSFA; HET: ADP TYD; 2.10A
{Thermotoga maritima} PDB: 3hjn_A*
Length = 197
Score = 69.5 bits (171), Expect = 1e-14
Identities = 50/215 (23%), Positives = 85/215 (39%), Gaps = 46/215 (21%)
Query: 60 LIVFEGLDGCGKSHTSQTVAKKLKASLKST-----PPSSIMS-------LREKFDAH-DS 106
I FEG+DG GKS Q +A+ L+ K P + L E+ +
Sbjct: 2 FITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKREPGGTETGEKIRKILLEEEVTPKAEL 61
Query: 107 LLRRAYYSLGNYIAA-----QDIKQDLQK-QPVVMDRFWHSTSAY-GMANELVKNSDLKL 159
L ++A+ +IKQ L + V++DR+ S+ AY G L
Sbjct: 62 FL---------FLASRNLLVTEIKQYLSEGYAVLLDRYTDSSVAYQGFGRNL-------G 105
Query: 160 PDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFRELLTTI 219
+ +++ + D + PDL Y+ V L+R F E +F E +
Sbjct: 106 KEIVEELNDFATDGLIPDLTFYIDVDVETALKRKGELNRF---EKR-----EFLERVREG 157
Query: 220 YRNM--NNPELVFVDNSEKSVHESSNDIVELIHNL 252
Y + +PE + V + ++S+ E D+V +
Sbjct: 158 YLVLAREHPERIVVLDGKRSIEEIHRDVVREVKRR 192
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle
structural genomics center for infectious transferase;
1.90A {Burkholderia thailandensis}
Length = 227
Score = 68.8 bits (169), Expect = 3e-14
Identities = 43/220 (19%), Positives = 73/220 (33%), Gaps = 46/220 (20%)
Query: 60 LIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMS----------------LREKFDA 103
I FEG+DG GK+ Q +L+ L +++ L + D
Sbjct: 27 FITFEGIDGAGKTTHLQWFCDRLQERLGPAGRHVVVTREPGGTRLGETLREILLNQPMDL 86
Query: 104 H-DSLLRRAYYSLGNYIAA------QDIKQDLQK-QPVVMDRFWHSTSAY-GMANELVKN 154
++LL A I+ L + VV DRF +T AY G L
Sbjct: 87 ETEALL---------MFAGRREHLALVIEPALARGDWVVSDRFTDATFAYQGGGRGL--- 134
Query: 155 SDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFRE 214
D+ + + W + +PDL + V I R + E+E + F
Sbjct: 135 ----PRDKLEALERWVQGGFQPDLTVLFDVPPQIASARRGAVRMPDKFESE---SDAFFA 187
Query: 215 LLTTIYRNM--NNPELVFVDNSEKSVHESSNDIVELIHNL 252
Y P + +S + + + + ++ L
Sbjct: 188 RTRAEYLRRAQEAPHRFVIVDSSEPIAQIRKQLEGVLAAL 227
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW,
emerald biostructures, ehrlich chaffeensis; 2.15A
{Ehrlichia chaffeensis}
Length = 223
Score = 65.0 bits (159), Expect = 6e-13
Identities = 43/222 (19%), Positives = 78/222 (35%), Gaps = 53/222 (23%)
Query: 60 LIVFEGLDGCGKSHTSQTVAKKLKASLK-----------STPPS----SIMSLREKFDAH 104
I FEG+DG GK+ S +A+ L T + +++ + D+
Sbjct: 23 FITFEGIDGSGKTTQSHLLAEYLSEIYGVNNVVLTREPGGTLLNESVRNLLFKAQGLDSL 82
Query: 105 -DSLLRRAYYSLGNYIAA------QDIKQDLQKQPVVM-DRFWHSTSAY-GMANELVKNS 155
+ L +IA + IK L ++ +V+ DRF ST AY G +
Sbjct: 83 SELLF---------FIAMRREHFVKIIKPSLMQKKIVICDRFIDSTIAYQGYGQGI---- 129
Query: 156 DLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFREL 215
D + D+ PD+ + V L R + E + +F
Sbjct: 130 ---DCSLIDQLNDLVIDV-YPDITFIIDVDINESLSRSCKNG---YE----FADMEFYYR 178
Query: 216 LTTIYRNM--NNPELVFVDNSEKS---VHESSNDIVELIHNL 252
+ + ++ NP V + + + + +E+I L
Sbjct: 179 VRDGFYDIAKKNPHRCHVITDKSETYDIDDINFVHLEVIKVL 220
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 54.1 bits (129), Expect = 2e-08
Identities = 51/333 (15%), Positives = 111/333 (33%), Gaps = 95/333 (28%)
Query: 1 MSSKYQLFAQYPSLVSVLSILKSAQYSSLPEVEELLNIYSRINETNDQDSGVGDDRKYPL 60
+ S + + PS+++ + I + + + +V N+ SR+ + + R
Sbjct: 94 LMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNV-SRLQPYLKLRQALLELRPAKN 152
Query: 61 IVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSI--MSLREKFDAHDSL--LRRAYYSL- 115
++ +G+ G GK+ + V K ++ I ++L+ L L++ Y +
Sbjct: 153 VLIDGVLGSGKTWVALDVCLSYK--VQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQID 210
Query: 116 GNYIAAQDI--------------KQDLQKQP------VVMDRFWHS-------------- 141
N+ + D + L K +V+ ++
Sbjct: 211 PNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILL 270
Query: 142 -TSAYGMAN----------ELVKNSDLKLPDEDDDIYS-W----PKDL------MKPDLV 179
T + + L +S PDE + + P+DL P
Sbjct: 271 TTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNP-RR 329
Query: 180 IYLTVSEAIRLQRLSRRKNF-----------------TLEENELKKNAKFRELLTTIYR- 221
+ + ++E+IR L+ N+ LE E +K F L +++
Sbjct: 330 LSI-IAESIR-DGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKM--FDRL--SVFPP 383
Query: 222 NMNNPELVFV---DNSEKSVHESSNDIVELIHN 251
+ + P ++ + KS +V +H
Sbjct: 384 SAHIPTILLSLIWFDVIKSDVM---VVVNKLHK 413
Score = 45.2 bits (106), Expect = 1e-05
Identities = 35/219 (15%), Positives = 70/219 (31%), Gaps = 48/219 (21%)
Query: 54 DDRKYPLIVFEGLDGCGKSHTSQTVAKKL-KASL--KSTPPS--SIMSL--------REK 100
P I+ + V KL K SL K S SI S+ +
Sbjct: 383 PSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENE 442
Query: 101 FDAHDSLLRRAYYSLGNYIAAQDIKQDLQKQPVVMDRFWHSTSAYGMAN-ELVKNSDL-- 157
+ H S++ Y + D DL + D++++S + + N E + L
Sbjct: 443 YALHRSIVDH-YNIPKTF----D-SDDLIPPYL--DQYFYSHIGHHLKNIEHPERMTLFR 494
Query: 158 -----------KLPDEDDDIYSWPKDLMKPDLVI-------YLTVSEAIRLQRLSRRKNF 199
K+ D +W + + Y+ ++ + ++ +F
Sbjct: 495 MVFLDFRFLEQKI---RHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDF 551
Query: 200 TLEENELKKNAKFRELLTTIYRNMNNPELVFVDNSEKSV 238
+ E +K+ +LL + + + + K V
Sbjct: 552 LPKIEENLICSKYTDLLRIA---LMAEDEAIFEEAHKQV 587
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta
protein., structural genomics, PSI-2, protein structure
initiative; HET: G3D; 2.20A {Bacillus subtilis} PDB:
2axp_A*
Length = 173
Score = 48.2 bits (115), Expect = 3e-07
Identities = 42/193 (21%), Positives = 68/193 (35%), Gaps = 32/193 (16%)
Query: 59 PLIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKFDAHDSLLRRAYYSLGNY 118
LI+ EG D C KS TVA KL LK + + +
Sbjct: 2 TLIILEGPDCCFKS----TVAAKLSKELK-------YPIIKGSSFELAKSGNEKLFEH-- 48
Query: 119 IAAQDIKQDLQKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPDL 178
+ + V++DRF +S Y A + S L + I +
Sbjct: 49 -----FNKLADEDNVIIDRFVYSNLVY--AKKFKDYSILT-ERQLRFI---EDKIKAKAK 97
Query: 179 VIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFRELLTTIYRNMNNPELVF--VDNSEK 236
V+YL ++ +RL R + +E ++ +L M+N L D +
Sbjct: 98 VVYLHADPSVIKKRLRVRGDEYIEGKDIDS------ILELYREVMSNAGLHTYSWDTGQW 151
Query: 237 SVHESSNDIVELI 249
S E + DI+ L+
Sbjct: 152 SSDEIAKDIIFLV 164
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural
genomics, PSI, protein struc initiative; 3.20A
{Agrobacterium tumefaciens str} SCOP: c.37.1.25
Length = 191
Score = 47.8 bits (113), Expect = 6e-07
Identities = 32/199 (16%), Positives = 61/199 (30%), Gaps = 27/199 (13%)
Query: 53 GDDRKYPLIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKFDAHDSLLRRAY 112
DD +++ G G GKS T+A+ L K H L
Sbjct: 4 TDDLGGNILLLSGHPGSGKS----TIAEALANLPG----------VPKVHFHSDDLWGY- 48
Query: 113 YSLGNYIAAQDIKQDLQKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKD 172
+ + + Q Q+ ++M Y V + PD
Sbjct: 49 --IKHGRIDPWLPQSHQQNRMIMQIAADVAGRYAKEGYFVILDGVVRPDWLPAF----TA 102
Query: 173 LMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFRELLTTIYRNMNNPELVFVD 232
L +P I L + A ++R R +L + + L + + ++ E +
Sbjct: 103 LARPLHYIVLRTTAAEAIERCLDRGGDSLSDPLV------VADLHSQFADLGAFEHHVLP 156
Query: 233 NSEKSVHESSNDIVELIHN 251
S K ++ + + +
Sbjct: 157 VSGKDTDQALQSAINALQS 175
>1kht_A Adenylate kinase; phosphotransferase, signaling protein,
transferase; HET: AMP; 2.50A {Methanococcus voltae}
SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Length = 192
Score = 46.2 bits (109), Expect = 2e-06
Identities = 32/210 (15%), Positives = 71/210 (33%), Gaps = 37/210 (17%)
Query: 57 KYPLIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPS-------SIM-------SLREKFD 102
K ++V G+ G G + T ++ +L+ + S+M +L D
Sbjct: 2 KNKVVVVTGVPGVGST----TSSQLAMDNLRKEGVNYKMVSFGSVMFEVAKEENLVSDRD 57
Query: 103 AHDSLLRRAYYSLGNYIAAQDIKQDLQKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDE 162
+ + +A + I + ++ PV +D HST V LP
Sbjct: 58 QMRKMDPETQKRI-QKMAGRKIAEMAKESPVAVD--THST---------VSTPKGYLPGL 105
Query: 163 DDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSR---RKNFTLEENELKKNAKFRELLTTI 219
+ + + PDL+I + + L R R + ++++
Sbjct: 106 PSWVL----NELNPDLIIVVETTGDEILMRRMSDETRVRDLDTASTIEQHQFMNRCAAMS 161
Query: 220 YRNMNNPELVFVDNSEKSVHESSNDIVELI 249
Y + + V N + ++ ++ ++
Sbjct: 162 YGVLTGATVKIVQNRNGLLDQAVEELTNVL 191
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein
struct initiative, northeast structural genomics
consortium, NESG, function; 2.40A {Bacillus halodurans}
SCOP: c.37.1.25
Length = 189
Score = 44.2 bits (104), Expect = 1e-05
Identities = 37/202 (18%), Positives = 65/202 (32%), Gaps = 30/202 (14%)
Query: 60 LIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKFDAHDSLLRRAYYSLGNYI 119
L + G G GKS T K+L A L ++ + +G Y
Sbjct: 4 LYIITGPAGVGKS----TTCKRLAAQLDNSAYIEGDIINHMV-------------VGGYR 46
Query: 120 AAQDIKQDLQKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYS--WPKDLMKPD 177
+ + L + T + +A V + PDE + + K
Sbjct: 47 PPWESDELLA---LTWKNITDLTVNFLLAQNDVVLDYIAFPDEAEALAQTVQAKVDDVEI 103
Query: 178 LVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFRELLTTIYRNMNNPELVFVDNSEKS 237
I L + L+R + RK +E ++ + E + + E F + S
Sbjct: 104 RFIILWTNREELLRRDALRKK---DEQMGERCLELVEE----FESKGIDERYFYNTSHLQ 156
Query: 238 VHESSNDIVELIHNLPMFKHSL 259
+ DIV+ + P F +
Sbjct: 157 PTNLN-DIVKNLKTNPRFIFCM 177
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding
motif, ATP- binding, nucleotide-binding, transferase;
HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB:
3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Length = 260
Score = 43.3 bits (102), Expect = 3e-05
Identities = 42/202 (20%), Positives = 72/202 (35%), Gaps = 32/202 (15%)
Query: 56 RKYPLIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKF----DAHDSLLRRA 111
LI+ GL G GKS S+ +AK L + +RE F + ++ ++++
Sbjct: 2 GDIMLIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGSDLIRESFPVWKEKYEEFIKKS 61
Query: 112 YYSLGNYIAAQDIKQDLQKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPK 171
Y L I L+ V++D T+ Y D+ + K
Sbjct: 62 TYRL--------IDSALKNYWVIVD----DTNYY--------------NSMRRDLINIAK 95
Query: 172 DLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFRELLTTIYRNMNNPELVFV 231
K +IYL S + ++R R E K KF E + P L+
Sbjct: 96 KYNKNYAIIYLKASLDVLIRRNIERGEKIPNEVIKKMYEKFDEP--GKKYKWDEPFLIID 153
Query: 232 DNSEKSVHESSNDIVELIHNLP 253
+ +E + ++E +P
Sbjct: 154 TTKDIDFNEIAKKLIEKSKEIP 175
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 43.1 bits (101), Expect = 6e-05
Identities = 40/238 (16%), Positives = 70/238 (29%), Gaps = 88/238 (36%)
Query: 12 PSLVSVLSILKSAQYSSLPE-------------VEELLNIYSR----INETNDQDSGVGD 54
+ + S L+ LPE EL+ + ++ +
Sbjct: 24 TASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELV---GKFLGYVSSLVEPSKVGQF 80
Query: 55 DR--KYPLIVFEG--LDGCGKS-HTSQTVAKKLKASLKSTPPSSIMSLREKFDA------ 103
D+ L FE L G H +A KL +T + ++ A
Sbjct: 81 DQVLNLCLTEFENCYL--EGNDIH---ALAAKLLQENDTTLVKTKELIKNYITARIMAKR 135
Query: 104 -----HDSLLRRA-------YYSL----GN---YIAAQDIKQDLQK-----QPVVMDRFW 139
+S L RA ++ GN Y ++L+ +V D
Sbjct: 136 PFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYF------EELRDLYQTYHVLVGDLI- 188
Query: 140 HSTSAYGMANELVKNSDLKLPDEDD------DIYSW---PKDLMKPDLVIYL---TVS 185
+ +EL++ + D + +I W P + PD YL +S
Sbjct: 189 --KFSAETLSELIRTT----LDAEKVFTQGLNILEWLENPSN--TPD-KDYLLSIPIS 237
Score = 35.4 bits (81), Expect = 0.018
Identities = 37/211 (17%), Positives = 64/211 (30%), Gaps = 101/211 (47%)
Query: 7 LF-----AQ--YPSLVSVLSILKSAQYS--------------SLPEVEELLNIYSRINET 45
LF YP+ SIL+ + + + +V++ +N + N
Sbjct: 303 LFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVN---KTNSH 359
Query: 46 NDQDSGV------GDDRKYPLIV------FEGLD----------GCGKSHT--SQTVAKK 81
V G L+V GL+ G +S S+ +K
Sbjct: 360 LPAGKQVEISLVNGAKN---LVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSE---RK 413
Query: 82 LKASLK----STPPSSIMSLREKFDAHDSLLRRAYYSLGNYIAAQDIKQDLQKQPVVMDR 137
LK S + ++P F H LL A + I +DL K V
Sbjct: 414 LKFSNRFLPVASP----------F--HSHLLVPA---------SDLINKDLVKNNVS--- 449
Query: 138 FWHSTSAYGMANELVKNSDLKLPDEDDDIYS 168
+++ D+++P +Y
Sbjct: 450 -FNA-------------KDIQIP-----VYD 461
Score = 35.0 bits (80), Expect = 0.026
Identities = 35/227 (15%), Positives = 64/227 (28%), Gaps = 78/227 (34%)
Query: 95 MSLREKFDAHDSLLRRA-YYSLGNY-IAAQDIKQDLQKQPVVMDRFWHSTSAYG------ 146
M L + A + RA + Y + DI + + H G
Sbjct: 1633 MDLYKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTI-----HFGGEKGKRIREN 1687
Query: 147 -MANELVKNSD--------LKLPDEDDDIYSW--PKDLMK------PDLVIYLTVSEAIR 189
A D K +E Y++ K L+ P L + +A
Sbjct: 1688 YSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPAL---TLMEKAA- 1743
Query: 190 LQRLSRRKN------------------------FTLEEN--------ELKKNAKFR-ELL 216
+ L + ++E + A R EL
Sbjct: 1744 FEDLKSKGLIPADATFAGHSLGEYAALASLADVMSIESLVEVVFYRGMTMQVAVPRDELG 1803
Query: 217 TTIYRNM--NNPELVFVDNSEKSVH-------ESSNDIVELI-HNLP 253
+ Y M NP V S++++ + + +VE++ +N+
Sbjct: 1804 RSNYG-MIAINPGRVAASFSQEALQYVVERVGKRTGWLVEIVNYNVE 1849
Score = 30.0 bits (67), Expect = 0.86
Identities = 19/97 (19%), Positives = 39/97 (40%), Gaps = 19/97 (19%)
Query: 146 GMANELVKNSDL--KLPDEDD----DIYSW-PKDLMK---PDLVIYLTVSEAIRLQRLSR 195
GM +L K S + + D D Y + D++ +L I+ + +R+
Sbjct: 1630 GMGMDLYKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFG---GEKGKRI-- 1684
Query: 196 RKNFT--LEENELKKNAKFRELLTTIYRNMNNPELVF 230
R+N++ + E + K ++ I N ++ F
Sbjct: 1685 RENYSAMIFETIVDGKLKTEKIFKEI--NEHSTSYTF 1719
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase;
HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A*
2jas_A*
Length = 205
Score = 41.1 bits (96), Expect = 1e-04
Identities = 40/213 (18%), Positives = 79/213 (37%), Gaps = 35/213 (16%)
Query: 61 IVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKFDAHDSL------LRRAYYS 114
I G G GKS T++ ++ L +E + + L++ +
Sbjct: 3 IAIFGTVGAGKS----TISAEISKKLGYEI------FKEPVEENPYFEQYYKDLKKTVFK 52
Query: 115 LGNYI---AAQDIKQDLQKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSW-- 169
+ Y+ ++ +KQ + ++ DR + N + N D + D Y+
Sbjct: 53 MQIYMLTARSKQLKQAKNLENIIFDRTLLEDPIFMKVNYDLNNVDQTDYNTYIDFYNNVV 112
Query: 170 ------PKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFRELLTTIY--- 220
P++ + D+VIYL VS + R+ +R EL ++ E L Y
Sbjct: 113 LENLKIPENKLSFDIVIYLRVSTKTAISRIKKRGR----SEELLIGEEYWETLNKNYEEF 168
Query: 221 -RNMNNPELVFVDNSEKSVHESSNDIVELIHNL 252
+ FV ++E V I+ ++++
Sbjct: 169 YKQNVYDFPFFVVDAELDVKTQIELIMNKLNSI 201
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins
(A/B), protein binding, transferase, phosphotransferase;
HET: ADP; 1.76A {Homo sapiens} PDB: 3iik_A 3iil_A*
3iim_A* 1rkb_A
Length = 180
Score = 39.6 bits (92), Expect = 3e-04
Identities = 30/203 (14%), Positives = 58/203 (28%), Gaps = 41/203 (20%)
Query: 54 DDRKYPLIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKFDAHDSLLRRAYY 113
+ P I+ G G GK+ T+ K+L + + RE+
Sbjct: 7 EFMLLPNILLTGTPGVGKT----TLGKELASKSGLKYINVGDLAREEQLYDGYDEEYDCP 62
Query: 114 SLGNYIAAQDIKQDLQKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDL 173
L ++ +++ V++D
Sbjct: 63 ILDEDRVVDELDNQMREGGVIVDYHG----------------------------CDFFPE 94
Query: 174 MKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFRELLTTIY---RNMNNPELVF 230
+V L + +RL R E +L N + E+ +Y E+V
Sbjct: 95 RWFHIVFVLRTDTNVLYERLETRGY---NEKKLTDNIQ-CEIFQVLYEEATASYKEEIVH 150
Query: 231 VDNSEK--SVHESSNDIVELIHN 251
S K + + + I++ I
Sbjct: 151 QLPSNKPEELENNVDQILKWIEQ 173
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A
{Sulfolobus acidocaldarius} SCOP: c.37.1.1
Length = 194
Score = 38.9 bits (90), Expect = 6e-04
Identities = 33/207 (15%), Positives = 66/207 (31%), Gaps = 33/207 (15%)
Query: 60 LIVFEGLDGCGKSHTSQTVAKKLK---ASLKSTPPSSIM-------SLREKFDAHDSLLR 109
+ + G+ G GKS V + L + K M + D L
Sbjct: 3 IGIVTGIPGVGKSTVLAKVKEILDNQGINNKIINYGDFMLATALKLGYAKDRDEMRKLSV 62
Query: 110 RAYYSLGNYIAAQDIKQD---LQKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDI 166
L AA+ I ++ + + +D H+ ++ LP +
Sbjct: 63 EKQKKLQI-DAAKGIAEEARAGGEGYLFIDT--HAV---------IRTPSGYLPGLPSYV 110
Query: 167 YSWPKDLMKPDLVIYLTVSEAIRLQRL----SRRKNFTLEENELKKNAKFRELLTTIYRN 222
+ P ++ L I L R +R +N +E+ + + F T
Sbjct: 111 I----TEINPSVIFLLEADPKIILSRQKRDTTRNRNDYSDESVILETINFARYAATASAV 166
Query: 223 MNNPELVFVDNSEKSVHESSNDIVELI 249
+ + + N E ++N+I+ +
Sbjct: 167 LAGSTVKVIVNVEGDPSIAANEIIRSM 193
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure
initiative, PSI, SGPP structural genomics of pathogenic
protozoa consortium; HET: ADP; 1.70A {Leishmania major}
SCOP: c.37.1.1
Length = 184
Score = 37.8 bits (87), Expect = 0.001
Identities = 27/203 (13%), Positives = 68/203 (33%), Gaps = 36/203 (17%)
Query: 55 DRKYPLIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKFDAHDSLLRRAYYS 114
K I+ G G GK+ ++A+ + A L + L ++ +
Sbjct: 7 QPKGINILITGTPGTGKT----SMAEMIAAELDGFQHLEVGKLVKENHFYTEY------- 55
Query: 115 LGNYIAAQDIKQDLQKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLM 174
D + +++ M +V + + +++
Sbjct: 56 ------------DTELDTHIIEEKDEDRLLDFMEPIMVSRGNHVVDYHSSELF----PER 99
Query: 175 KPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFRELLTTIYRNM-----NNPELV 229
+V+ L S + +RL++R+ E + +N + E+ ++ LV
Sbjct: 100 WFHMVVVLHTSTEVLFERLTKRQY---SEAKRAENME-AEIQCICEEEARDAYEDDIVLV 155
Query: 230 FVDNSEKSVHESSNDIVELIHNL 252
+++ + + + +I E + L
Sbjct: 156 RENDTLEQMAATVEEIRERVEVL 178
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure
initiative, midwest CENT structural genomics, MCSG;
2.79A {Clostridium symbiosum atcc 14940}
Length = 223
Score = 37.8 bits (87), Expect = 0.002
Identities = 27/205 (13%), Positives = 66/205 (32%), Gaps = 11/205 (5%)
Query: 56 RKYPLIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKFDAHD-SLLRRAYYS 114
K +I E G G + +A++L + S + L +
Sbjct: 12 NKNLIITIEREYGSGGRIVGKKLAEELGIHFYDDDILKLASEKSAVGEQFFRLADEKAGN 71
Query: 115 LGNYIAAQDIKQDLQKQPVVMDRFWHSTSAYGMANELV----KNSDLKLPDEDDDIYSWP 170
Y K DL +P D+ + + +E++ ++
Sbjct: 72 NLLYRLGGGRKIDLHSKPSPNDKLTSPENLFKFQSEVMRELAESEPCIFVGRAAGYVLDQ 131
Query: 171 KDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEE--NELKKNAKFRELLTTIYRNMNNPEL 228
+ ++ + I++ + ++QR+ E +KK K R+ + +
Sbjct: 132 DEDIERLIRIFVYTDKVKKVQRVMEVDCIDEERAKRRIKKIEKERKEYYKYFTGSEWHSM 191
Query: 229 VF----VDNSEKSVHESSNDIVELI 249
++ ++ ++ E++ I I
Sbjct: 192 KNYDLPINTTKLTLEETAELIKAYI 216
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein,
feedback inhibition, deoxyribonucleoside kinase, salvage
pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP:
c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A*
2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A*
1zm7_A* 1zmx_A*
Length = 230
Score = 37.7 bits (87), Expect = 0.002
Identities = 29/219 (13%), Positives = 68/219 (31%), Gaps = 33/219 (15%)
Query: 54 DDRKYPLIVFEGLDGCGKSHTSQTVAKKLKASLKSTP-PSSIMSLREKFDAHDSL----- 107
+ + ++ EG G GK+ T + + + + + L
Sbjct: 16 EGTQPFTVLIEGNIGSGKT----TYLNHFEKYKNDICLLTEPVEKWRNVNGVNLLELMYK 71
Query: 108 -LRRAYYSLGNYIAA---QDIKQDLQKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDED 163
++ +Y+ Q K+ +M+R S + N + L
Sbjct: 72 DPKKWAMPFQSYVTLTMLQSHTAPTNKKLKIMERSIFSARYCFVEN---MRRNGSLEQGM 128
Query: 164 DDIYSWPKDLM------KPDLVIYLTVSEAIRLQRLSRRKNFTLEENEL------KKNAK 211
+ + + DL+IYL S + +R+ +R EE+ + + +
Sbjct: 129 YNTLEEWYKFIEESIHVQADLIIYLRTSPEVAYERIRQRARS--EESCVPLKYLQELHEL 186
Query: 212 FRELLTTIYRNMNNPELVFVDNSEKSVHESSNDIVELIH 250
+ L R + V V +++ ++ +
Sbjct: 187 HEDWLIHQRRPQSCK--VLVLDADLNLENIGTEYQRSES 223
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 36.1 bits (82), Expect = 0.003
Identities = 10/22 (45%), Positives = 13/22 (59%), Gaps = 1/22 (4%)
Query: 76 QTVAKKLKASLKSTPPSSIMSL 97
Q + KKL+ASLK S +L
Sbjct: 20 QAL-KKLQASLKLYADDSAPAL 40
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate
hydrolases fold, S genomics, joint center for structural
genomics, JCSG; HET: MSE; 1.70A {Chloroflexus
aurantiacus}
Length = 193
Score = 36.1 bits (83), Expect = 0.005
Identities = 20/145 (13%), Positives = 42/145 (28%), Gaps = 34/145 (23%)
Query: 60 LIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKF--------DAHDSLLRRA 111
LI+ G GK+ T+++ L L P S + +E +
Sbjct: 7 LIIVTGHPATGKT----TLSQALATGL-RLPLLSKDAFKEVMFDGLGWSDREWSRRVGAT 61
Query: 112 YYSLGNYIAAQDIKQDLQKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPK 171
+ + AA ++ Q ++M+ + L +
Sbjct: 62 AIMMLYHTAATILQSG---QSLIMESNFRVDLDTERMQNLHTIAPF-------------- 104
Query: 172 DLMKPDLVIYLTVSEAIRLQRLSRR 196
+ I S + ++R+ R
Sbjct: 105 ----TPIQIRCVASGDVLVERILSR 125
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system
kinase, STRU genomics, joint center for structural
genomics, JCSG; 1.95A {Silicibacter SP}
Length = 208
Score = 35.1 bits (81), Expect = 0.013
Identities = 28/162 (17%), Positives = 51/162 (31%), Gaps = 33/162 (20%)
Query: 56 RKYPLIVF-EGLDGCGKSHTSQTVAKKLKASL-KSTPPSSIMSL------REKFDAHDSL 107
+ +V G G GKS T++ L A+L P+ ++ + + L
Sbjct: 19 QPGRQLVALSGAPGSGKS----TLSNPLAAALSAQGLPAEVVPMDGFHLDNRLLEPRGLL 74
Query: 108 LRRAYYSLGNYIAAQDIKQDLQKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDD--- 164
R+ ++ Q + L+ Q + A ++ ++ E
Sbjct: 75 PRKGAPETFDFEGFQRLCHALKHQE------RVIYPLFDRARDIAIAGAAEVGPECRVAI 128
Query: 165 --------DIYSWPK--DLMKPDLVIYLTVSEAIRLQRLSRR 196
D W + D+ I L V A RL +R
Sbjct: 129 IEGNYLLFDAPGWRDLTAIW--DVSIRLEVPMADLEARLVQR 168
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI,
protein structure initiative; 2.05A {Escherichia coli}
SCOP: c.37.1.2
Length = 173
Score = 34.4 bits (80), Expect = 0.015
Identities = 15/77 (19%), Positives = 30/77 (38%), Gaps = 6/77 (7%)
Query: 178 LVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFRELLTT---IYRNMNNPELVFVDNS 234
+V+YL + +L R R K L E L +Y + + V +
Sbjct: 99 VVVYLETTIEKQLARTQRDKKRPLLHVETPPREVLEALANERNPLYEEIAD---VTIRTD 155
Query: 235 EKSVHESSNDIVELIHN 251
++S +N I+ ++ +
Sbjct: 156 DQSAKVVANQIIHMLES 172
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase,
antibiotic resistance, phosphorylation, mononucleoti
binding fold; HET: ATP; 2.50A {Streptomyces venezuelae}
SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A*
1qhy_A*
Length = 178
Score = 34.0 bits (77), Expect = 0.027
Identities = 27/197 (13%), Positives = 58/197 (29%), Gaps = 26/197 (13%)
Query: 57 KYPLIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKFDAHDSLLRRAYYSLG 116
+I+ G GKS + + L++ L P + +A ++ A +
Sbjct: 2 TTRMIILNGGSSAGKS----GIVRCLQSVLPE--PWLAFGVDSLIEAMPLKMQSAEGGIE 55
Query: 117 NYIAAQDIKQDLQKQPVVMDRFWHSTSAYGMANE----LVKNSDLKLPDEDDDIYSWPKD 172
D + + ++ W MA ++ + L + S+ D
Sbjct: 56 ---FDADGGVSIGPEFRALEGAWAEG-VVAMARAGARIIIDDVFLGGAAAQERWRSFVGD 111
Query: 173 LMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFRELLTTIYRNMNNPELVFVD 232
L L + + A+ R + R + + ++ VD
Sbjct: 112 L--DVLWVGVRCDGAVAEGRETARGDRVAG---------MAAKQAYVVHEGVEYDVE-VD 159
Query: 233 NSEKSVHESSNDIVELI 249
+ K E + I +
Sbjct: 160 TTHKESIECAWAIAAHV 176
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A
{Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A
1ko5_A* 1ko8_A* 1kof_A*
Length = 175
Score = 33.5 bits (76), Expect = 0.035
Identities = 26/150 (17%), Positives = 43/150 (28%), Gaps = 34/150 (22%)
Query: 55 DRKYPLIVFEGLDGCGKSHTSQTVAKKLKA------SLKSTPPSSIMSLREKFDAHDSLL 108
+ + + V G+ G GKS + VA +L A L M+ E + D
Sbjct: 5 NHDHHIYVLMGVSGSGKSAVASEVAHQLHAAFLDGDFLHPRRNIEKMASGEPLNDDD--- 61
Query: 109 RRAYYSLGNYIAAQDIKQDLQKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYS 168
R+ + + + ++ S LK D
Sbjct: 62 RKPWL---QALNDAAFAMQRTNKVSLIVC-----------------SALKKHYRD----- 96
Query: 169 WPKDLMKPDLVIYLTVSEAIRLQRLSRRKN 198
++ IYL + RL RK
Sbjct: 97 LLREGNPNLSFIYLKGDFDVIESRLKARKG 126
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A
{Coxiella burnetii}
Length = 185
Score = 32.6 bits (75), Expect = 0.065
Identities = 16/80 (20%), Positives = 34/80 (42%), Gaps = 11/80 (13%)
Query: 178 LVIYLTVSEAIRLQRLSRRKNFT---LEENELKKNAKFRELLTT---IYRNMNNPELVFV 231
+VIYLT S +L+R+ ++ +N K K ++L +Y+ M + +
Sbjct: 100 VVIYLTASIDTQLKRIGQKGEMRRPLFIKNNSK--EKLQQLNEIRKPLYQAMAD---LVY 154
Query: 232 DNSEKSVHESSNDIVELIHN 251
+ + + + I+ I
Sbjct: 155 PTDDLNPRQLATQILVDIKQ 174
>1eu1_A Dimethyl sulfoxide reductase; molybdenum, molybdenum cofactor,
DMSO, molybdopte oxidoreductase; HET: GLC MGD EPE; 1.30A
{Rhodobacter sphaeroides} SCOP: b.52.2.2 c.81.1.1 PDB:
4dmr_A* 1dmr_A* 1e5v_A* 1h5n_A* 2dmr_A* 3dmr_A* 1e61_A*
1e60_A* 1e18_A* 1dms_A*
Length = 780
Score = 33.5 bits (77), Expect = 0.068
Identities = 15/72 (20%), Positives = 26/72 (36%), Gaps = 20/72 (27%)
Query: 110 RAYYSLGNYIAAQD-----IKQDLQKQP--VVMDRFWHSTSAYGMANELVKNSDLKLPD- 161
+ Y G A + + +K +V D W +T+ + +D+ LP
Sbjct: 426 KLAYWAGGNPFAHHQDRNRMLKAWEKLETFIVQDFQWTATARH---------ADIVLPAT 476
Query: 162 ---EDDDIYSWP 170
E +DI S
Sbjct: 477 TSYERNDIESVG 488
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC,
cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo
sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B*
2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A*
2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A*
2zi7_B* 2zia_A* 3kfx_A* ...
Length = 263
Score = 32.9 bits (74), Expect = 0.076
Identities = 36/247 (14%), Positives = 72/247 (29%), Gaps = 57/247 (23%)
Query: 54 DDRKYPLIVFEGLDGCGKSHTSQTVAKKLKASLK---------------STPPSSIMSLR 98
+ + I EG GKS T LK + + L
Sbjct: 20 EGTRIKKISIEGNIAAGKS----TFVNILKQLCEDWEVVPEPVARWCNVQSTQDEFEELT 75
Query: 99 EKFDAHDSLLRRAY-------YSLGNYIAAQDIKQ----------DLQKQPVVMDRFWHS 141
++L+ Y ++ Y I+ D +K + +R +S
Sbjct: 76 MSQKNGGNVLQMMYEKPERWSFTFQTYACLSRIRAQLASLNGKLKDAEKPVLFFERSVYS 135
Query: 142 TSAYGMANELVKNSDLKLPDEDDDIYS--------WPKDLMKPDLVIYLTVSEAIRLQRL 193
+N + + + IY ++ D +IYL + L R+
Sbjct: 136 DRYIFASNL---YESECMNETEWTIYQDWHDWMNNQFGQSLELDGIIYLQATPETCLHRI 192
Query: 194 SRR-----KNFTLE----ENELKKNAKFRELLTTIYRNMNNPELVFVDNSEKSVHESSND 244
R + LE + ++ L T + + ++ +D +E +
Sbjct: 193 YLRGRNEEQGIPLEYLEKLHYKHESWLLHRTLKTNFDYLQEVPILTLDVNE-DFKDKYES 251
Query: 245 IVELIHN 251
+VE +
Sbjct: 252 LVEKVKE 258
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A
{Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A
3n2e_A*
Length = 168
Score = 32.1 bits (74), Expect = 0.086
Identities = 12/77 (15%), Positives = 31/77 (40%), Gaps = 13/77 (16%)
Query: 178 LVIYLTVSEAIRLQRLSRRKNFT--LEENELKKNAKFRELLTT---IYRNMNNPELVFVD 232
YL + ++RL++++ L L + +EL +Y + F+
Sbjct: 99 TTFYLKMDFETLIKRLNQKEREKRPL----LNNLTQAKELFEKRQALYEKNAS----FII 150
Query: 233 NSEKSVHESSNDIVELI 249
++ ++ S +++ I
Sbjct: 151 DARGGLNNSLKQVLQFI 167
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces
cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Length = 203
Score = 32.2 bits (74), Expect = 0.097
Identities = 8/30 (26%), Positives = 17/30 (56%)
Query: 168 SWPKDLMKPDLVIYLTVSEAIRLQRLSRRK 197
S+ +D+++ +++ E I L+RL R
Sbjct: 113 SFERDIVESKFILFFDCPEDIMLERLLERG 142
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate
kinase); nucleoside monophosphate kinase, NMP kinase;
HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP:
c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Length = 194
Score = 31.7 bits (73), Expect = 0.14
Identities = 8/27 (29%), Positives = 13/27 (48%)
Query: 171 KDLMKPDLVIYLTVSEAIRLQRLSRRK 197
KD + V++ E + QRL +R
Sbjct: 106 KDFVDTKFVLFFDCPEEVMTQRLLKRG 132
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid
biosynthesis, P-loop kinase, metal- binding, shikimate
pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis}
SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A*
2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A*
1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A*
3baf_A*
Length = 184
Score = 31.4 bits (72), Expect = 0.15
Identities = 16/84 (19%), Positives = 31/84 (36%), Gaps = 13/84 (15%)
Query: 172 DLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKN---AKFRELLTT---IYRNMNN 225
+ V+YL +S A ++R L L K+R L+ +YR +
Sbjct: 90 AALAGHTVVYLEISAAEGVRRTGGNTVRPL----LAGPDRAEKYRALMAKRAPLYRRVAT 145
Query: 226 PELVFVDNSEKSVHESSNDIVELI 249
+ VD + ++ I+ +
Sbjct: 146 ---MRVDTNRRNPGAVVRHILSRL 166
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase,
transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens}
PDB: 1z83_A* 3adk_A
Length = 196
Score = 31.7 bits (73), Expect = 0.16
Identities = 7/29 (24%), Positives = 15/29 (51%)
Query: 168 SWPKDLMKPDLVIYLTVSEAIRLQRLSRR 196
+ + + +P L++Y+ QRL +R
Sbjct: 105 EFERRIGQPTLLLYVDAGPETMTQRLLKR 133
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A
{Campylobacter jejuni} SCOP: c.37.1.2
Length = 175
Score = 31.4 bits (72), Expect = 0.18
Identities = 16/86 (18%), Positives = 30/86 (34%), Gaps = 12/86 (13%)
Query: 171 KDLMKPDLVIYLTVSEAIRLQRLSRRKNFT--LEENELKKNAKFRELLTT---IYRNMNN 225
+L K IYL +RL + + L K ++L Y N
Sbjct: 88 SNLEKAGFCIYLKADFEYLKKRLDKDEISKRPL----FYDEIKAKKLYNERLSKYEQKAN 143
Query: 226 PELVFVDNSEKSVHESSNDIVELIHN 251
++ K++ E ++I ++I
Sbjct: 144 ---FILNIENKNIDELLSEIKKVIKE 166
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET:
AMP; 2.3A {Homo sapiens}
Length = 199
Score = 31.0 bits (71), Expect = 0.23
Identities = 7/30 (23%), Positives = 12/30 (40%)
Query: 168 SWPKDLMKPDLVIYLTVSEAIRLQRLSRRK 197
+ + + P LVI + S RL +
Sbjct: 108 EFGRRIGDPQLVICMDCSADTMTNRLLQMS 137
>1p6x_A Thymidine kinase; P-loop, LID, transferase; HET: THM; 2.00A {Equid
herpesvirus 4} SCOP: c.37.1.1 PDB: 1p72_A* 1p73_A*
1p75_A*
Length = 334
Score = 31.6 bits (71), Expect = 0.23
Identities = 14/90 (15%), Positives = 32/90 (35%), Gaps = 7/90 (7%)
Query: 112 YYSLGNYIAAQDIKQDLQKQP-----VVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDI 166
Y L ++ LQ+ +V DR + S D+ + +
Sbjct: 91 YLILHDHTCTLFGGNSLQRGTQPDLTLVFDRHPVA-STVCFPAARYLLGDMSMCALMAMV 149
Query: 167 YSWPKDLMKPDLVIYLTVSEAIRLQRLSRR 196
+ P++ + ++ T++ ++RL R
Sbjct: 150 ATLPRE-PQGGNIVVTTLNVEEHIRRLRTR 178
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3;
1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A*
1viy_A 1t3h_A 1n3b_A
Length = 218
Score = 31.0 bits (71), Expect = 0.28
Identities = 8/27 (29%), Positives = 15/27 (55%)
Query: 177 DLVIYLTVSEAIRLQRLSRRKNFTLEE 203
+ V+ + VS +L+R +R + T E
Sbjct: 127 NRVLVVDVSPETQLKRTMQRDDVTREH 153
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 30.9 bits (69), Expect = 0.31
Identities = 14/73 (19%), Positives = 31/73 (42%), Gaps = 10/73 (13%)
Query: 185 SEAIRLQRLSRRKNFT-LEENELKKNAKFREL----LTTIYRNMNNP-ELVFVDN--SEK 236
E+IR R +RK L+ ++RE L + + E ++N ++K
Sbjct: 84 PESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIADK 143
Query: 237 SVHESSNDIVELI 249
+ ++ + ++I
Sbjct: 144 AFYQQPDA--DII 154
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural
genomics, riken structural genomics/proteomics
initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus}
SCOP: c.37.1.1
Length = 203
Score = 30.6 bits (70), Expect = 0.32
Identities = 5/27 (18%), Positives = 11/27 (40%)
Query: 177 DLVIYLTVSEAIRLQRLSRRKNFTLEE 203
+ + R++R+ R + EE
Sbjct: 126 HGTLLVAAPLEERVRRVMARSGLSREE 152
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2
function project, S2F, structural genomics, transferase;
HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Length = 206
Score = 30.6 bits (70), Expect = 0.33
Identities = 8/27 (29%), Positives = 15/27 (55%)
Query: 177 DLVIYLTVSEAIRLQRLSRRKNFTLEE 203
D ++ + VS +L R ++R N E+
Sbjct: 125 DRILVVDVSPQTQLARSAQRDNNNFEQ 151
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849,
bifunctional coenzyme A synthase (COA synthase), S
genomics; HET: ACO UNL; 1.70A {Mus musculus}
Length = 281
Score = 30.7 bits (70), Expect = 0.38
Identities = 4/27 (14%), Positives = 10/27 (37%)
Query: 177 DLVIYLTVSEAIRLQRLSRRKNFTLEE 203
V + + E ++R+ R +
Sbjct: 201 HEVWTVVIPETEAVRRIVERDGLSEAA 227
>1of1_A Thymidine kinase; transferase, antiviral drug, enzyme- prodrug
gene, DNA synthesis, ATP-binding; HET: SCT; 1.95A
{Herpes simplex virus} SCOP: c.37.1.1
Length = 376
Score = 30.6 bits (68), Expect = 0.52
Identities = 6/64 (9%), Positives = 19/64 (29%), Gaps = 2/64 (3%)
Query: 133 VVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQR 192
++ DR + + + + + ++ + E + R
Sbjct: 159 LIFDRHPIA-ALLCYPAARYLMGSMTPQA-VLAFVALIPPTLPGTNIVLGALPEDRHIDR 216
Query: 193 LSRR 196
L++R
Sbjct: 217 LAKR 220
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural
genomics of infec diseases, csgid, metal binding,
transferase; 1.70A {Bacteroides thetaiotaomicron}
Length = 199
Score = 29.5 bits (67), Expect = 0.68
Identities = 13/83 (15%), Positives = 23/83 (27%), Gaps = 14/83 (16%)
Query: 178 LVIYLTVSEAIRLQRLSRRKN-----FTLEENELKKNAKFRELLTT---IYRNMNNPELV 229
++L V + +RL K E++EL + L Y
Sbjct: 120 KTVFLNVHPDVLFRRLRIAKQQRPILQGKEDDELMD--FIIQALEKRAPFYTQAQ----Y 173
Query: 230 FVDNSEKSVHESSNDIVELIHNL 252
+ E V+ + L
Sbjct: 174 IFNADELEDRWQIESSVQRLQEL 196
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI,
protein structure initiative; 1.90A {Geobacillus
stearothermophilus} SCOP: c.37.1.6
Length = 201
Score = 29.6 bits (67), Expect = 0.69
Identities = 22/152 (14%), Positives = 52/152 (34%), Gaps = 22/152 (14%)
Query: 65 GLDGCGKSHTSQTVAKKLKASLKST-PPSSIMSL--------REKFDAHDSLLRRAYYSL 115
GL GK+ T+A +L +L+ + + + ++ Y
Sbjct: 29 GLSRSGKT----TLANQLSQTLREQGISVCVFHMDDHIVERAKRYHTGNEEWFEYYYLQW 84
Query: 116 GNYIAAQDIKQDLQK-QPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPK--- 171
+ + L+ + + + H T + + +SD+ + + ++ K
Sbjct: 85 DVEWLTHQLFRQLKASHQLTLPFYDHETDTHSKRTVYLSDSDMIMIE---GVFLQRKEWR 141
Query: 172 DLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEE 203
D V+YL IR R + + +++
Sbjct: 142 PFF--DFVVYLDCPREIRFARENDQVKQNIQK 171
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics,
PSI-2, protein STRU initiative, northeast structural
genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Length = 204
Score = 29.4 bits (67), Expect = 0.77
Identities = 5/27 (18%), Positives = 12/27 (44%), Gaps = 1/27 (3%)
Query: 177 DLVIYLTVSEAIRLQRLSRRKNFTLEE 203
D +I + + +R +R + E+
Sbjct: 125 DKLIVVYAPYEVCKERAIKR-GMSEED 150
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop
kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex
aeolicus}
Length = 168
Score = 29.0 bits (66), Expect = 1.1
Identities = 13/78 (16%), Positives = 26/78 (33%), Gaps = 13/78 (16%)
Query: 178 LVIYLTVSEAIRLQRLSRRKNFTLEENELKKN-AKFRELLTT---IYRNMNNPELVFVDN 233
+++ + + L+R K L LK+ + + L IY +
Sbjct: 95 TTVFIDIPFEVFLERCKDSKERPL----LKRPLDEIKNLFEERRKIYSKAD-----IKVK 145
Query: 234 SEKSVHESSNDIVELIHN 251
EK E +I+ +
Sbjct: 146 GEKPPEEVVKEILLSLEG 163
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region,
conformational changes, transferase; 2.10A {Homo
sapiens} SCOP: c.37.1.1
Length = 196
Score = 29.0 bits (66), Expect = 1.2
Identities = 4/27 (14%), Positives = 9/27 (33%)
Query: 171 KDLMKPDLVIYLTVSEAIRLQRLSRRK 197
V++ + I ++R R
Sbjct: 109 DGKADVSFVLFFDCNNEICIERCLERG 135
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein
structure initiati YORK structural genomics research
consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Length = 202
Score = 28.9 bits (64), Expect = 1.3
Identities = 8/24 (33%), Positives = 12/24 (50%)
Query: 59 PLIVFEGLDGCGKSHTSQTVAKKL 82
IV G+ G GKS + +A+
Sbjct: 19 GSIVVMGVSGSGKSSVGEAIAEAC 42
>1e2k_A Thymidine kinase; transferase, antiviral drug, enzyme-prodrug gene
therapy, sugar ring pucker; HET: TMC; 1.7A {Herpes
simplex virus} SCOP: c.37.1.1 PDB: 1e2i_A* 1e2h_A*
1e2m_A* 1e2n_A* 1e2p_A* 1ki2_A* 1ki3_A* 1ki4_A* 1ki6_B*
1ki7_A* 1ki8_A* 3rdp_A* 2ki5_A* 1kim_A* 1qhi_A* 1p7c_A*
1vtk_A* 2vtk_A* 3vtk_A* 3f0t_A* ...
Length = 331
Score = 29.0 bits (64), Expect = 1.5
Identities = 6/64 (9%), Positives = 19/64 (29%), Gaps = 2/64 (3%)
Query: 133 VVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQR 192
++ DR + + + + + ++ + E + R
Sbjct: 114 LIFDRHPIA-ALLCYPAARYLMGSMTPQA-VLAFVALIPPTLPGTNIVLGALPEDRHIDR 171
Query: 193 LSRR 196
L++R
Sbjct: 172 LAKR 175
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A
{Enterobacteria phage T4} SCOP: c.37.1.1
Length = 181
Score = 28.6 bits (64), Expect = 1.7
Identities = 29/184 (15%), Positives = 50/184 (27%), Gaps = 33/184 (17%)
Query: 60 LIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKFDAHDSLLRRAY------- 112
+I+ G G GKS T A++ A + R+ AH+ Y
Sbjct: 4 IILTIGCPGSGKS----TWAREFIAKNPGFYNINRDDYRQSIMAHEERDEYKYTKKKEGI 59
Query: 113 -YSLGNYIAAQDIKQDLQKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPK 171
+ A + + V++ + K K+
Sbjct: 60 VTGMQFDTAKSILYGGDSVKGVIISDTNLNPERRLAWETFAKEYGWKV------------ 107
Query: 172 DLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAK-FRELLT--TIYRNMNNPEL 228
V ++R S+R + + L+ K RE L P+
Sbjct: 108 ------EHKVFDVPWTELVKRNSKRGTKAVPIDVLRSMYKSMREYLGLPVYNGTPGKPKA 161
Query: 229 VFVD 232
V D
Sbjct: 162 VIFD 165
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop,
transferase; HET: ADP; 2.33A {Enterobacteria phage T4}
SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A*
2ia5_A
Length = 301
Score = 28.5 bits (63), Expect = 2.3
Identities = 15/85 (17%), Positives = 27/85 (31%), Gaps = 12/85 (14%)
Query: 60 LIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKFDAHDSLLRRAY------- 112
+I+ G G GKS T A++ A + R+ AH+ Y
Sbjct: 4 IILTIGCPGSGKS----TWAREFIAKNPGFYNINRDDYRQSIMAHEERDEYKYTKKKEGI 59
Query: 113 -YSLGNYIAAQDIKQDLQKQPVVMD 136
+ A + + V++
Sbjct: 60 VTGMQFDTAKSILYGGDSVKGVIIS 84
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding,
human, structura genomics, structural genomics
consortium, SGC, transferase; HET: GP5; 2.05A {Homo
sapiens} PDB: 2ar7_A* 3ndp_A
Length = 246
Score = 28.0 bits (63), Expect = 2.5
Identities = 10/26 (38%), Positives = 13/26 (50%)
Query: 171 KDLMKPDLVIYLTVSEAIRLQRLSRR 196
+ + DLVI L + RLSRR
Sbjct: 123 DKICEVDLVISLNIPFETLKDRLSRR 148
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway,
P-loop protein, transferase; 1.8A {Erwinia chrysanthemi}
SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Length = 173
Score = 27.9 bits (63), Expect = 2.6
Identities = 9/79 (11%), Positives = 27/79 (34%), Gaps = 13/79 (16%)
Query: 178 LVIYLTVSEAIRLQRLSRRKNFT----LEENELKKNAKFRELLTT---IYRNMNNPELVF 230
V+YL RL L + + +L +Y+++ + +
Sbjct: 96 TVVYLFAPAEELALRLQASLQAHQRPTLTGRPIA--EEMEAVLREREALYQDVAH----Y 149
Query: 231 VDNSEKSVHESSNDIVELI 249
V ++ + ++++ +
Sbjct: 150 VVDATQPPAAIVCELMQTM 168
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD,
CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A*
1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Length = 806
Score = 28.2 bits (63), Expect = 2.8
Identities = 12/45 (26%), Positives = 18/45 (40%), Gaps = 9/45 (20%)
Query: 68 GCGKSHTSQTVAKKLKASLKSTPPSSIMS---------LREKFDA 103
G GK+ ++ VA + A IMS LR+ F+
Sbjct: 248 GTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEE 292
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme
kinase, structural genomics, joint center for structural
GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Length = 192
Score = 27.9 bits (63), Expect = 3.0
Identities = 6/22 (27%), Positives = 8/22 (36%)
Query: 177 DLVIYLTVSEAIRLQRLSRRKN 198
D VI + S L+R
Sbjct: 131 DHVITVVASRETILKRNREADR 152
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat
ATP binding, chloroplast, transferase; 2.35A
{Arabidopsis thaliana}
Length = 250
Score = 27.8 bits (62), Expect = 3.3
Identities = 8/90 (8%), Positives = 21/90 (23%), Gaps = 15/90 (16%)
Query: 171 KDLMKPDLVIYLTVSEAIRLQRLSRR--------KNFTLEENELKKNAKFRELLTT---I 219
M + I+L V R++ + + + +
Sbjct: 137 WKYMHKGISIWLDVPLEALAHRIAAVGTGSRPLLHDDESGDTYTAALNRLSTIWDARGEA 196
Query: 220 YRNMNNPELVFVDNSEKSVHESSNDIVELI 249
Y + V ++ + +L
Sbjct: 197 YTKAS----ARVSLENITLKLGYRSVSDLT 222
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex,
transferase; HET: DTP; 2.80A {Homo sapiens} SCOP:
c.37.1.1
Length = 241
Score = 27.8 bits (61), Expect = 3.6
Identities = 29/173 (16%), Positives = 48/173 (27%), Gaps = 44/173 (25%)
Query: 61 IVFEGLDGCGKSHTSQTVAKKLKASLK------------STPPSSIMSLREKFDAHDSLL 108
+ EG GKS T K L + ++ + +LL
Sbjct: 5 LSIEGNIAVGKS----TFVKLLTKTYPEWHVATEPVATWQNIQAAGNQKACTAQSLGNLL 60
Query: 109 RRAY-------YSLGNYIAAQDIKQ----------DLQKQPVVMDRFWHSTSAYGMANEL 151
Y Y+ + +K +K + +R +S N
Sbjct: 61 DMMYREPARWSYTFQTFSFLSRLKVQLEPFPEKLLQARKPVQIFERSVYSDRYIFAKN-- 118
Query: 152 VKNSDLKLPDEDDDIY--------SWPKDLMKPDLVIYLTVSEAIRLQRLSRR 196
+ L D + IY + IYL S + L+RL +R
Sbjct: 119 -LFENGSLSDIEWHIYQDWHSFLLWEFASRITLHGFIYLQASPQVCLKRLYQR 170
>1osn_A Thymidine kinase, VZV-TK; chickenpox, BVDU-MP, transferase; HET:
BVP ADP; 3.20A {Human herpesvirus 3} SCOP: c.37.1.1
Length = 341
Score = 27.8 bits (61), Expect = 3.7
Identities = 18/132 (13%), Positives = 39/132 (29%), Gaps = 2/132 (1%)
Query: 65 GLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKFDAHDSLLRRAYYSLGNYIAAQDI 124
G D + +QT S + + H + + + +
Sbjct: 58 GEDAICGIYGTQTRRLNGDVSPEDAQRLTAHFQSLFCSPHAIMHAKISALMDTSTSDLVQ 117
Query: 125 KQDLQKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTV 184
+ ++ DR + S D+ +++ P + ++ TV
Sbjct: 118 VNKEPYKIMLSDRHPIA-STICFPLSRYLVGDMSPAALPGLLFTLPAEP-PGTNLVVCTV 175
Query: 185 SEAIRLQRLSRR 196
S L R+S+R
Sbjct: 176 SLPSHLSRVSKR 187
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme
function initiative, EFI, STRU genomics, transferase;
1.60A {Janibacter SP}
Length = 200
Score = 27.4 bits (60), Expect = 4.2
Identities = 7/29 (24%), Positives = 12/29 (41%)
Query: 56 RKYPLIVFEGLDGCGKSHTSQTVAKKLKA 84
+V G+ G GK+ + VA +
Sbjct: 27 EPTRHVVVMGVSGSGKTTIAHGVADETGL 55
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG,
PRK04182 class ME structural genomics, protein structure
initiative; 2.20A {Eubacterium ventriosum}
Length = 201
Score = 27.3 bits (60), Expect = 4.8
Identities = 17/202 (8%), Positives = 54/202 (26%), Gaps = 15/202 (7%)
Query: 57 KYPLIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKFDAHDSLLRRAYYSLG 116
K +I G G ++ +A+ L S + + + +L R
Sbjct: 5 KQIIIAIGREFGSGGHLVAKKLAEHYNIPLYSK--ELLDEVAKDGRYSKEVLERFDEKPM 62
Query: 117 NYIAAQDIKQDLQKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKP 176
N+ + + + + + D
Sbjct: 63 NFAFIPVPAGG--TTISLEQDIAIRQFNFIRKKANEEKESFVIVGRCAEEI--LSD-NPN 117
Query: 177 DLVIYLTVSEAIRLQRLSRRKNFTLEE------NELKKNAKFRELLTTI-YRNMNNPELV 229
+ ++ + + +R+ R+ + K + + + ++
Sbjct: 118 MISAFILGDKDTKTKRVMEREGVDEKTALNMMKKMDKMRKVYHNFYCESKWGDSRTYDIC 177
Query: 230 FVDNSEKSVHESSNDIVELIHN 251
+ + V +++ I++ I +
Sbjct: 178 -IKIGKVDVDTATDMIIKYIDS 198
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP
phosphotransferase, myokinase, structural genomics,
structural genomics consortium, SGC; 1.48A {Homo
sapiens} PDB: 2ak3_A*
Length = 227
Score = 27.2 bits (61), Expect = 4.9
Identities = 9/25 (36%), Positives = 12/25 (48%)
Query: 172 DLMKPDLVIYLTVSEAIRLQRLSRR 196
+ D VI L V + QRL+ R
Sbjct: 104 RAYQIDTVINLNVPFEVIKQRLTAR 128
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL
helix motif, transcription regulator; 3.20A
{Streptococcus pneumoniae}
Length = 253
Score = 27.2 bits (59), Expect = 4.9
Identities = 22/225 (9%), Positives = 61/225 (27%), Gaps = 26/225 (11%)
Query: 33 EELLNIYSRINETNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPS 92
E + +R G ++ I+ G G GK+ + K+ + ++
Sbjct: 9 SEFKHALARNLR--SLTRGKKSSKQPIAILLGGQSGAGKTTIHRIKQKEFQGNIVIIDGD 66
Query: 93 SIMSLREKFDAHDSLLRRAYYSLGNYIAAQDIKQDL-----QKQPVVMDRFWHSTSAYGM 147
S S + + A + ++ + ++++ +
Sbjct: 67 SFRSQHPHYLELQQEYGKDSVEYTKDFAGKMVESLVTKLSSLGYNLLIEGTLRTVDVPKK 126
Query: 148 ANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELK 207
+L+KN ++ + + + R N +
Sbjct: 127 TAQLLKNKGYEV------------------QLALIATKPELSYLSTLIRYEELYIINPNQ 168
Query: 208 KNAKFRELLTTIYRNM-NNPELVFVDNSEKSVHESSNDIVELIHN 251
A +E I ++ +N + + + D + +
Sbjct: 169 ARATPKEHHDFIVNHLVDNTRKLEELAIFERIQIYQRDRSCVYDS 213
>3sqg_C Methyl-coenzyme M reductase, gamma subunit; anaerobic methane
oxidation, transferase; HET: MHS 0AF TP7 M43 1PE PGE
P6G; 2.10A {Uncultured archaeon}
Length = 279
Score = 27.2 bits (60), Expect = 5.6
Identities = 15/52 (28%), Positives = 19/52 (36%), Gaps = 13/52 (25%)
Query: 201 LEENELKKNAKFRELLTTIYRNMNNPELVFVDNSEKSVHESSNDIVELIHNL 252
L + EL K TT+YRN D+ E S D+ IH
Sbjct: 204 LSDAELLKK-------TTMYRNAQGGVWQEADDPE------SMDVTAQIHWK 242
>2yy5_A Tryptophanyl-tRNA synthetase; aminoaccyl tRNA synthetase,
structural genomics, NPPSFA; HET: WSA; 2.55A {Mycoplasma
pneumoniae}
Length = 348
Score = 27.2 bits (61), Expect = 6.2
Identities = 8/55 (14%), Positives = 14/55 (25%), Gaps = 1/55 (1%)
Query: 30 PEVEELLNIYSRINETNDQDSGVGDDRKYPLIVFEGLD-GCGKSHTSQTVAKKLK 83
P V +L I + + S F K+ ++ L
Sbjct: 246 PGVTNMLTILKALLKEPVNQSLTNQLGNDLEAYFSTKSYLDLKNALTEATVNLLV 300
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase,
protein-targeting, transport protein; HET: GDP; 1.97A
{Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Length = 328
Score = 26.8 bits (60), Expect = 6.8
Identities = 14/56 (25%), Positives = 24/56 (42%), Gaps = 1/56 (1%)
Query: 33 EELLNIYSRINETNDQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLKASLKS 88
E + I + + ++ Y +I+F G +G GK+ T +A LK S
Sbjct: 105 EAVSEILETSRRIDLIEEIRKAEKPY-VIMFVGFNGSGKTTTIAKLANWLKNHGFS 159
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET:
AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Length = 222
Score = 26.8 bits (60), Expect = 7.2
Identities = 7/23 (30%), Positives = 14/23 (60%)
Query: 174 MKPDLVIYLTVSEAIRLQRLSRR 196
++PD I L V + + ++R+ R
Sbjct: 107 IRPDTFILLDVPDELLVERVVGR 129
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.314 0.131 0.365
Gapped
Lambda K H
0.267 0.0788 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,775,954
Number of extensions: 215469
Number of successful extensions: 631
Number of sequences better than 10.0: 1
Number of HSP's gapped: 584
Number of HSP's successfully gapped: 113
Length of query: 259
Length of database: 6,701,793
Length adjustment: 92
Effective length of query: 167
Effective length of database: 4,133,061
Effective search space: 690221187
Effective search space used: 690221187
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 56 (25.2 bits)