RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy16563
(259 letters)
>d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 214
Score = 64.9 bits (157), Expect = 2e-13
Identities = 43/204 (21%), Positives = 76/204 (37%), Gaps = 18/204 (8%)
Query: 60 LIVFEGLDGCGKSHTSQTVAKKLKASLKST--PPSS--------IMSLREKFDAHDSLLR 109
LI+ EGLD GK+ + KKL+ + K P S + F D +
Sbjct: 5 LILIEGLDRTGKTTQCNILYKKLQPNCKLLKFPERSTRIGGLINEYLTDDSFQLSDQAIH 64
Query: 110 RAYYSLGNYIAAQDIKQDLQKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSW 169
+ + I + K L+ + +VMDR+ +S AY A + D
Sbjct: 65 LLFSANRWEIVDKIKKDLLEGKNIVMDRYVYSGVAYSAAK-------GTNGMDLDWCLQP 117
Query: 170 PKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENE-LKKNAKFRELLTTIYRNMNNPEL 228
L+KPDL ++L+ + S + E + +K + L + +
Sbjct: 118 DVGLLKPDLTLFLSTQDVDNNAEKSGFGDERYETVKFQEKVKQTFMKLLDKEIRKGDESI 177
Query: 229 VFVDNSEKSVHESSNDIVELIHNL 252
VD + K + E I +++ +
Sbjct: 178 TIVDVTNKGIQEVEALIWQIVEPV 201
>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus
voltae [TaxId: 2188]}
Length = 190
Score = 58.8 bits (141), Expect = 3e-11
Identities = 24/202 (11%), Positives = 61/202 (30%), Gaps = 27/202 (13%)
Query: 60 LIVFEGLDGCGKSHTSQTVAKKLKASLKSTP---------PSSIMSLREKFDAHDSLLRR 110
++V G+ G G + +SQ L+ + + +
Sbjct: 3 VVVVTGVPGVGSTTSSQLAMDNLRKEGVNYKMVSFGSVMFEVAKEENLVSDRDQMRKMDP 62
Query: 111 AYYSLGNYIAAQDIKQDLQKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWP 170
+A + I + ++ PV +D ++ G L W
Sbjct: 63 ETQKRIQKMAGRKIAEMAKESPVAVDTHSTVSTPKGYLPGLPS---------------WV 107
Query: 171 KDLMKPDLVIYLTVSEAIRLQRLSRRKNFTL---EENELKKNAKFRELLTTIYRNMNNPE 227
+ + PDL+I + + L R + + ++++ Y +
Sbjct: 108 LNELNPDLIIVVETTGDEILMRRMSDETRVRDLDTASTIEQHQFMNRCAAMSYGVLTGAT 167
Query: 228 LVFVDNSEKSVHESSNDIVELI 249
+ V N + ++ ++ ++
Sbjct: 168 VKIVQNRNGLLDQAVEELTNVL 189
>d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 208
Score = 55.1 bits (131), Expect = 7e-10
Identities = 36/212 (16%), Positives = 68/212 (32%), Gaps = 32/212 (15%)
Query: 60 LIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLRE-------------------- 99
LI EG+DG GK T+ +KL + ++ S L
Sbjct: 2 LIAIEGVDGAGKR----TLVEKLSGAFRAAGRSVAT-LAFPRYGQSVAADIAAEALHGEH 56
Query: 100 -KFDAHDSLLRRAYYSLGNYIAAQDIKQDLQKQPVVMDRFWHSTSAYGMANELVKNSDLK 158
+ + + V++DR+ S +AY A L +N+ K
Sbjct: 57 GDLASSVYAMATLFALDRAGAVHTIQGLCRGYDVVILDRYVASNAAYSAAR-LHENAAGK 115
Query: 159 LPDEDDDIYSWPKDLMKPDLVIYLTVS--EAIRLQRLSRRKNFTLEENELKKNAKFRELL 216
I L KPD + L VS A R +++ + +++A+ ++
Sbjct: 116 AAAWVQRIEFARLGLPKPDWQVLLAVSAELAGERSRGRAQRDPGRARDNYERDAELQQRT 175
Query: 217 TTIYRNM---NNPELVFVDNSEKSVHESSNDI 245
+Y + V ++ + +
Sbjct: 176 GAVYAELAAQGWGGRWLVVGADVDPGRLAATL 207
>d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId:
562]}
Length = 210
Score = 53.8 bits (128), Expect = 2e-09
Identities = 32/216 (14%), Positives = 63/216 (29%), Gaps = 36/216 (16%)
Query: 60 LIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKFDAHDSLLRRAYYSLG--- 116
IV EGL+G GK+ T + +L+ ++ RE + R+
Sbjct: 4 YIVIEGLEGAGKT----TARNVVVETLEQLGIRDMVFTREPGGTQLAEKLRSLLLDIKSV 59
Query: 117 ------------------NYIAAQDIKQDLQKQPVVMDRFWHSTSAYGMANELVKNSDLK 158
+ IK L V+ ++ +
Sbjct: 60 GDEVITDKAEVLMFYAARVQLVETVIKPALANGTWVIGDRHDLSTQAYQGGGRGID---- 115
Query: 159 LPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFRELLTT 218
+ +PDL +YL V+ + L+R R E E + F
Sbjct: 116 -QHMLATLRDAVLGDFRPDLTLYLDVTPEVGLKRARARGELDRIEQE---SFDFFNRTRA 171
Query: 219 IYRNM--NNPELVFVDNSEKSVHESSNDIVELIHNL 252
Y + + + +D + + + + I + +
Sbjct: 172 RYLELAAQDKSIHTIDAT-QPLEAVMDAIRTTVTHW 206
>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus
acidocaldarius [TaxId: 2285]}
Length = 194
Score = 53.5 bits (127), Expect = 3e-09
Identities = 24/202 (11%), Positives = 61/202 (30%), Gaps = 23/202 (11%)
Query: 60 LIVFEGLDGCGKSHTSQTVAKKLKASLKSTP---------PSSIMSLREKFDAHDSLLRR 110
+ + G+ G GKS V + L + +++ K L
Sbjct: 3 IGIVTGIPGVGKSTVLAKVKEILDNQGINNKIINYGDFMLATALKLGYAKDRDEMRKLSV 62
Query: 111 AYYSLGNYIAAQDIKQDLQ---KQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIY 167
AA+ I ++ + + + +D + G +
Sbjct: 63 EKQKKLQIDAAKGIAEEARAGGEGYLFIDTHAVIRTPSGYLPG-----------LPSYVI 111
Query: 168 SWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFRELLTTIYRNMNNPE 227
+ + L + + + + +R +N +E+ + + F T +
Sbjct: 112 TEINPSVIFLLEADPKIILSRQKRDTTRNRNDYSDESVILETINFARYAATASAVLAGST 171
Query: 228 LVFVDNSEKSVHESSNDIVELI 249
+ + N E ++N+I+ +
Sbjct: 172 VKVIVNVEGDPSIAANEIIRSM 193
>d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens)
[TaxId: 9606]}
Length = 209
Score = 51.9 bits (123), Expect = 1e-08
Identities = 34/202 (16%), Positives = 71/202 (35%), Gaps = 12/202 (5%)
Query: 56 RKYPLIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKFDAHDSLLRRAYYSL 115
R+ LIV EG+D GKS T ++KL +L + + + + L +Y
Sbjct: 1 RRGALIVLEGVDRAGKS----TQSRKLVEALCAAGHRAELLRFPERSTEIGKLLSSYLQK 56
Query: 116 GNYIAAQDIKQDL---QKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKD 172
+ + + + + V + + S + + + +++ W K
Sbjct: 57 KSDVEDHSVHLLFSANRWEQVPLIKEKLSQGVTLVVDRYAFSGVAFTGAKENFSLDWCKQ 116
Query: 173 LMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFRELLTTIYRNM--NNPELVF 230
L + ++L ++R F E E N F+E + + +
Sbjct: 117 PDVGLPKPDLVLFLQLQLADAAKRGAFGHERYE---NGAFQERALRCFHQLMKDTTLNWK 173
Query: 231 VDNSEKSVHESSNDIVELIHNL 252
+ ++ KS+ DI L +
Sbjct: 174 MVDASKSIEAVHEDIRVLSEDA 195
>d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type
1, different strains [TaxId: 10298]}
Length = 329
Score = 51.2 bits (122), Expect = 3e-08
Identities = 18/172 (10%), Positives = 41/172 (23%), Gaps = 37/172 (21%)
Query: 60 LIVFEGLDGCGKSHTSQTVAKKLKA--------------SLKSTPPS----SIMSLREKF 101
+ +G G GK+ T+Q + L ++ + ++
Sbjct: 6 RVYIDGPHGMGKTTTTQLLVALGSRDDIVYVPEPMTYWRVLGASETIANIYTTQHRLDQG 65
Query: 102 DAHDSLLRRAYYSLGNYIAAQDIKQDLQKQP-----------------VVMDRFWHSTSA 144
+ S + D P ++ DR +
Sbjct: 66 EISAGDAAVVMTSAQITMGMPYAVTDAVLAPHIGGEAGSSHAPPPALTLIFDRHPIAALL 125
Query: 145 YGMANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRR 196
A P + + ++ + E + RL++R
Sbjct: 126 CYPAARY--LMGSMTPQAVLAFVALIPPTLPGTNIVLGALPEDRHIDRLAKR 175
>d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus
[TaxId: 10335]}
Length = 331
Score = 51.2 bits (122), Expect = 3e-08
Identities = 22/179 (12%), Positives = 45/179 (25%), Gaps = 49/179 (27%)
Query: 61 IVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSI-----MSLREKFDAHDSL-------- 107
I +G G GK+ T A++ TP + +S D++
Sbjct: 8 IYLDGAYGIGKT----TAAEEFLHHFAITPNRILLIGEPLSYWRNLAGEDAICGIYGTQT 63
Query: 108 -----------LRRAYYSLGNYIAAQDIKQDLQKQP-------------------VVMDR 137
+R + + + ++ DR
Sbjct: 64 RRLNGDVSPEDAQRLTAHFQSLFCSPHAIMHAKISALMDTSTSDLVQVNKEPYKIMLSDR 123
Query: 138 FWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRR 196
+++ + P + ++ TVS L R+S+R
Sbjct: 124 HPIASTICFPLSRY--LVGDMSPAALPGLLFTLPAEPPGTNLVVCTVSLPSHLSRVSKR 180
>d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4
[TaxId: 10331]}
Length = 333
Score = 50.8 bits (121), Expect = 5e-08
Identities = 20/171 (11%), Positives = 46/171 (26%), Gaps = 37/171 (21%)
Query: 61 IVFEGLDGCGKSHTSQTVAKKLKA---------------SLKSTPPS----SIMSLREKF 101
I +G+ G GKS T + +A +L T + +++
Sbjct: 9 IYLDGVYGIGKSTTGRVMASAASGGSPTLYFPEPMAYWRTLFETDVISGIYDTQNRKQQG 68
Query: 102 DAHDSLLRRAYYSLGNYIA---------------AQDIKQDLQKQP-VVMDRFWHSTSAY 145
+ + +++ Q +V DR + S
Sbjct: 69 NLAVDDAALITAHYQSRFTTPYLILHDHTCTLFGGNSLQRGTQPDLTLVFDRHPVA-STV 127
Query: 146 GMANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRR 196
D+ + + + ++ T++ ++RL R
Sbjct: 128 CFPAARYLLGDMS-MCALMAMVATLPREPQGGNIVVTTLNVEEHIRRLRTR 177
>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 181
Score = 47.2 bits (111), Expect = 3e-07
Identities = 37/189 (19%), Positives = 62/189 (32%), Gaps = 12/189 (6%)
Query: 61 IVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKFDAHDSLLRRAYYSLGNYIA 120
++ G G GK T A KL L S+ R + L A Y+
Sbjct: 3 VLLLGPPGAGKG----TQAVKLAEKLGIPQISTGELFRRNIEEGTKLGVEAK----RYLD 54
Query: 121 AQDIKQDLQKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVI 180
A D+ +V DR + +A G + S + + + D V+
Sbjct: 55 AGDLVPSDLTNELVDDRLNNPDAANGFILDGYPRSVEQAKALHEM---LERRGTDIDAVL 111
Query: 181 YLTVSEAIRLQRLSRRKNFTLEENELKKNAKFRELLTTIYRNMNNPELVFVDNSEKSVHE 240
VSE + L+RL R ++ + K T +L VD + ++ E
Sbjct: 112 EFRVSEEVLLERLKGRGRADDTDDVILNRMKVYRDETAPLLEYYRDQLKTVD-AVGTMDE 170
Query: 241 SSNDIVELI 249
+ +
Sbjct: 171 VFARALRAL 179
>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus
halodurans [TaxId: 86665]}
Length = 176
Score = 46.2 bits (108), Expect = 6e-07
Identities = 30/194 (15%), Positives = 53/194 (27%), Gaps = 29/194 (14%)
Query: 60 LIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKF--DAHDSLLRRAYYSLGN 117
L + G G GKS T K+L A L ++ + +L
Sbjct: 4 LYIITGPAGVGKS----TTCKRLAAQLDNSAYIEGDIINHMVVGGYRPPWESDELLALTW 59
Query: 118 YIAAQDIKQDLQKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPD 177
L Q V+ + + V+ K
Sbjct: 60 KNITDLTVNFLLAQNDVVLDYIAFPDEAEALAQTVQA----------------KVDDVEI 103
Query: 178 LVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFRELLTTIYRNMNNPELVFVDNSEKS 237
I L + L+R + RK +E ++ + E + + E F + S
Sbjct: 104 RFIILWTNREELLRRDALRK---KDEQMGERCLELVEEFESKGID----ERYFYNTSHLQ 156
Query: 238 VHESSNDIVELIHN 251
++ + L N
Sbjct: 157 PTNLNDIVKNLKTN 170
>d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens)
[TaxId: 9606]}
Length = 241
Score = 46.2 bits (108), Expect = 9e-07
Identities = 27/237 (11%), Positives = 57/237 (24%), Gaps = 41/237 (17%)
Query: 57 KYPLIVFEGLDGCGKSHTSQTVAKKLKASLKSTPP-----------SSIMSLREKFDAHD 105
+ I EG GKS + + + P L
Sbjct: 1 RIKKISIEGNIAAGKSTFVNILKQLCEDWEVVPEPVARWCNVQSTQDEFEELTMSQKNGG 60
Query: 106 SLLRRAYYSLGNYIAAQD----------------------IKQDLQKQPVVMDRFWHSTS 143
++L+ Y + K L + V + S
Sbjct: 61 NVLQMMYEKPERWSFTFQTYACLSRIRAQLASLNGKLKDAEKPVLFFERSVYSDRYIFAS 120
Query: 144 AYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEE 203
+ + + D D + + ++ D +IYL + L R+ R +
Sbjct: 121 NLYESECMNETEWTIYQDWHDWMNNQFGQSLELDGIIYLQATPETCLHRIYLRGRNEEQG 180
Query: 204 NELKKNAKFRELLTTIYRNMN--------NPELVFVDNSEKSVHESSNDIVELIHNL 252
L+ K + + + + + + +VE +
Sbjct: 181 IPLEYLEKLHYKHESWLLHRTLKTNFDYLQEVPILTLDVNEDFKDKYESLVEKVKEF 237
>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId:
562]}
Length = 171
Score = 44.3 bits (103), Expect = 2e-06
Identities = 26/195 (13%), Positives = 46/195 (23%), Gaps = 30/195 (15%)
Query: 56 RKYPLIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKFDAHDSLLRRAYYSL 115
+ + V G+ G GKS VA ++ L L + +
Sbjct: 4 HDHHIYVLMGVSGSGKS----AVASEVAHQLH-AAFLDGDFLHPRRNIEKMASGEPLNDD 58
Query: 116 GNYIAAQDIKQDLQKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMK 175
Q + SA ++
Sbjct: 59 DRKPWLQALNDAAFAMQRTNKVSLIVCSALKKHY-----------------RDLLREGNP 101
Query: 176 PDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFRELLTTIYRNMNNPEL-VFVDNS 234
IYL + RL RK + L + + E V V +
Sbjct: 102 NLSFIYLKGDFDVIESRLKARKGHFFKTQMLVTQFE-------TLQEPGADETDVLVVDI 154
Query: 235 EKSVHESSNDIVELI 249
++ + +E+I
Sbjct: 155 DQPLEGVVASTIEVI 169
>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia
coli [TaxId: 562]}
Length = 179
Score = 44.2 bits (103), Expect = 3e-06
Identities = 28/192 (14%), Positives = 55/192 (28%), Gaps = 19/192 (9%)
Query: 61 IVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKFDAHDSLLRRAYYSLGNYIA 120
I+ G GK T A+ + +S + A + +
Sbjct: 3 IILLGAPVAGKG----TQAQFIMEKYGIP----QISTGDMLRAAVKSGSELGKQAKDIMD 54
Query: 121 AQDIKQDLQKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVI 180
A + D +V +R G + P + + + D V+
Sbjct: 55 AGKLVTDELVIALVKERIAQEDCRNGFLLD-------GFPRTIPQADAMKEAGINVDYVL 107
Query: 181 YLTVSEAIRLQRLSRRKNFTLEENELKKNAKFRELLTTIYRN---MNNPELVFVDNSEKS 237
V + + + R+ + L + + L Y N + VD K
Sbjct: 108 EFDVPDELIVDRIVKDDQEETVRKRLVEYHQMTAPLIGYYSKEAEAGNTKYAKVD-GTKP 166
Query: 238 VHESSNDIVELI 249
V E D+ +++
Sbjct: 167 VAEVRADLEKIL 178
>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase
{Streptomyces venezuelae [TaxId: 54571]}
Length = 178
Score = 43.9 bits (102), Expect = 4e-06
Identities = 23/190 (12%), Positives = 49/190 (25%), Gaps = 18/190 (9%)
Query: 60 LIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKFDAHDSLLRRAYYSLGNYI 119
+I+ G GKS + + L + S++ G I
Sbjct: 5 MIILNGGSSAGKSGIVRCLQSVLPEPWLAFGVDSLIEAMPLKMQSAEGGIEFDADGGVSI 64
Query: 120 AAQDIKQDLQKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPDLV 179
+ + V+ A ++ + L + S+ D L
Sbjct: 65 GPEFRALEGAWAEGVVAMARA------GARIIIDDVFLGGAAAQERWRSFVGD--LDVLW 116
Query: 180 IYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFRELLTTIYRNMNNPELVFVDNSEKSVH 239
+ + A+ R + R + + ++ VD + K
Sbjct: 117 VGVRCDGAVAEGRETARGDRVAG---------MAAKQAYVVHEGVEYDVE-VDTTHKESI 166
Query: 240 ESSNDIVELI 249
E + I +
Sbjct: 167 ECAWAIAAHV 176
>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly
(Drosophila melanogaster) [TaxId: 7227]}
Length = 197
Score = 43.5 bits (101), Expect = 6e-06
Identities = 29/187 (15%), Positives = 57/187 (30%), Gaps = 21/187 (11%)
Query: 60 LIVFEGLDGCGKSHTSQTVAKKLKASLKSTP----------PSSIMSLREKFDAHDSLLR 109
++ EG G GK+ T + + ++L E
Sbjct: 11 TVLIEGNIGSGKT----TYLNHFEKYKNDICLLTEPVEKWRNVNGVNLLELMYKDPKKWA 66
Query: 110 RAYYSLGNYIAAQDIKQDLQKQPVVMDRFWHSTSAYGMAN---ELVKNSDLKLPDEDDDI 166
+ S Q K+ +M+R S + N + E+
Sbjct: 67 MPFQSYVTLTMLQSHTAPTNKKLKIMERSIFSARYCFVENMRRNGSLEQGMYNTLEEWYK 126
Query: 167 YSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNF---TLEENELKK-NAKFRELLTTIYRN 222
+ ++ DL+IYL S + +R+ +R + L++ + + L R
Sbjct: 127 FIEESIHVQADLIIYLRTSPEVAYERIRQRARSEESCVPLKYLQELHELHEDWLIHQRRP 186
Query: 223 MNNPELV 229
+ LV
Sbjct: 187 QSCKVLV 193
>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum
[TaxId: 44689]}
Length = 194
Score = 43.0 bits (100), Expect = 9e-06
Identities = 30/201 (14%), Positives = 64/201 (31%), Gaps = 18/201 (8%)
Query: 57 KYPLIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKFDAHDSLLRRAYYSLG 116
K ++ G G GK T + S+ LR++ + +
Sbjct: 5 KPNVVFVLGGPGSGKG----TQCANIVRDFGWVHLSAGDLLRQEQQSGSKDGEMIATMIK 60
Query: 117 NYIAAQDIKQDLQKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKP 176
N I V + + + + + + ++ KD +
Sbjct: 61 NGEIVPSI---------VTVKLLKNAIDANQGKNFLVDGFPRNEENNNSWEENMKDFVDT 111
Query: 177 DLVIYLTVSEAIRLQRLSRRK-----NFTLEENELKKNAKFRELLTTIYRNMNNPELVFV 231
V++ E + QRL +R + E+ K+ F + + N + V +
Sbjct: 112 KFVLFFDCPEEVMTQRLLKRGESSGRSDDNIESIKKRFNTFNVQTKLVIDHYNKFDKVKI 171
Query: 232 DNSEKSVHESSNDIVELIHNL 252
+ + V+E ND+ L ++
Sbjct: 172 IPANRDVNEVYNDVENLFKSM 192
>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major
[TaxId: 5664]}
Length = 174
Score = 42.3 bits (98), Expect = 1e-05
Identities = 22/200 (11%), Positives = 56/200 (28%), Gaps = 29/200 (14%)
Query: 57 KYPLIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKFDAHDSLLRRAYYSLG 116
K I+ G G GK+ ++A+ + A L + L ++ + +
Sbjct: 4 KGINILITGTPGTGKT----SMAEMIAAELDGFQHLEVGKLVKENHFYTEYDTELDTHII 59
Query: 117 NYIAAQDIKQDLQKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKP 176
+ ++ V D S
Sbjct: 60 EEKDEDRLLDFMEPIMVSRGNHVV-----------------------DYHSSELFPERWF 96
Query: 177 DLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFRELLTTIYRNMNNPELVFVDNSEK 236
+V+ L S + +RL++R+ + E + + + +
Sbjct: 97 HMVVVLHTSTEVLFERLTKRQYSEAKRAENMEAEIQCI--CEEEARDAYEDDIVLVREND 154
Query: 237 SVHESSNDIVELIHNLPMFK 256
++ + + + E+ + + K
Sbjct: 155 TLEQMAATVEEIRERVEVLK 174
>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 196
Score = 41.9 bits (97), Expect = 2e-05
Identities = 37/200 (18%), Positives = 68/200 (34%), Gaps = 17/200 (8%)
Query: 57 KYPLIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKFDAHDSLLRRAYYSLG 116
+ +I G G GK T +KL S+ LR + S G
Sbjct: 7 QVSVIFVLGGPGAGKG----TQCEKLVKDYSFVHLSAGDLLRAEQGRAGS-------QYG 55
Query: 117 NYIAAQDIKQDLQKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKP 176
I + + Q + + ++ S AN+ D D S+ +D+++
Sbjct: 56 ELIKNCIKEGQIVPQEITLALLRNAISDNVKANKHKFLIDGFPRKM-DQAISFERDIVES 114
Query: 177 DLVIYLTVSEAIRLQRLSRRKNF-----TLEENELKKNAKFRELLTTIYRNMNNPELVFV 231
+++ E I L+RL R E+ K+ F+E + V
Sbjct: 115 KFILFFDCPEDIMLERLLERGKTSGRSDDNIESIKKRFNTFKETSMPVIEYFETKSKVVR 174
Query: 232 DNSEKSVHESSNDIVELIHN 251
++SV + D+ + I +
Sbjct: 175 VRCDRSVEDVYKDVQDAIRD 194
>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain
{Fungus (Penicillium chrysogenum) [TaxId: 5076]}
Length = 183
Score = 41.2 bits (95), Expect = 3e-05
Identities = 24/191 (12%), Positives = 50/191 (26%), Gaps = 23/191 (12%)
Query: 61 IVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKFDAHDSLLRRAYYSLGNYIA 120
I G GK +A+ L+ +L R +R S +
Sbjct: 9 IFLTGYMNSGKD----AIARALQVTLNQ------QGGRSVSLLLGDTVRHELSSELGFTR 58
Query: 121 AQDIKQDLQKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVI 180
+ V + + ++ + +D +
Sbjct: 59 EDRHTNIQRIAFVATELTRAGAAVIAAPI-----------APYEESRKFARDAVSQAGSF 107
Query: 181 YLTVSEAIRLQRLSRRKNFTLEENELKKNAKFRELLTTIYRNMNNPELVFVDNSEKSVHE 240
+L K + F + Y +LV VD S++SV
Sbjct: 108 FLVHVATPLEHCEQSDKRGIYAAARRGEIKGFTG-VDDPYETPEKADLV-VDFSKQSVRS 165
Query: 241 SSNDIVELIHN 251
++I+ ++ +
Sbjct: 166 IVHEIILVLES 176
>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain
{Bacteriophage T4 [TaxId: 10665]}
Length = 152
Score = 40.9 bits (94), Expect = 4e-05
Identities = 24/158 (15%), Positives = 48/158 (30%), Gaps = 15/158 (9%)
Query: 60 LIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKFDAHDSLLRRAYYSLGNYI 119
+I+ G G GKS T A++ A + R+ ++ Y
Sbjct: 4 IILTIGCPGSGKS----TWAREFIAKNPGFYNINRDDYRQS------IMAHEERDEYKYT 53
Query: 120 AAQDIKQDLQKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPDLV 179
++ + + S G+ + P+ ++ K+
Sbjct: 54 KKKEGIVTGMQFDTAKSILYGGDSVKGVIISDTNLN----PERRLAWETFAKEYGWKVEH 109
Query: 180 IYLTVSEAIRLQRLSRRKNFTLEENELKKNAK-FRELL 216
V ++R S+R + + L+ K RE L
Sbjct: 110 KVFDVPWTELVKRNSKRGTKAVPIDVLRSMYKSMREYL 147
>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus
stearothermophilus [TaxId: 1422]}
Length = 182
Score = 39.5 bits (91), Expect = 1e-04
Identities = 34/199 (17%), Positives = 63/199 (31%), Gaps = 28/199 (14%)
Query: 61 IVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKFDAHDSLLRRAYYSLGNYIA 120
+V GL G GK T A+K+ A+ S+ R L +A Y+
Sbjct: 3 LVLMGLPGAGKG----TQAEKIVAAYGIPHISTGDMFRAAMKEGTPLGLQAK----QYMD 54
Query: 121 AQDIKQDLQKQPVVMDRFWHSTSAYG-------MANELVKNSDLKLPDEDDDIYSWPKDL 173
D+ D +V +R G + + L D +
Sbjct: 55 RGDLVPDEVTIGIVRERLSKDDCQNGFLLDGFPRTVAQAEALETMLADIGRKLDYVIHID 114
Query: 174 MKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFRELLTTIYRNMNNPELVFVDN 233
++ D+++ ++ +R + + L + + L I N
Sbjct: 115 VRQDVLMERLTADDNEATVANRLEVNMKQMKPLVDFYEQKGYLRNI-------------N 161
Query: 234 SEKSVHESSNDIVELIHNL 252
E+ + + DI EL+ L
Sbjct: 162 GEQDMEKVFADIRELLGGL 180
>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015
{Agrobacterium tumefaciens [TaxId: 358]}
Length = 176
Score = 39.5 bits (91), Expect = 1e-04
Identities = 21/192 (10%), Positives = 51/192 (26%), Gaps = 27/192 (14%)
Query: 60 LIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKFDAHDSLLRRAYYSLGNYI 119
+++ G G GKS ++ +A + + L + +
Sbjct: 6 ILLLSGHPGSGKSTIAEALANLPGVPKVHFHSDDLWGYIKHGRIDPWLPQSHQQNRMIMQ 65
Query: 120 AAQDIKQDLQKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPDLV 179
A D+ K+ + + L +P
Sbjct: 66 IAADVAGRYAKEGYFVILDGVVRPDWLP---------------------AFTALARPLHY 104
Query: 180 IYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFRELLTTIYRNMNNPELVFVDNSEKSVH 239
I L + A ++R R + + L + + ++ E + S K
Sbjct: 105 IVLRTTAAEAIERCLDRG------GDSLSDPLVVADLHSQFADLGAFEHHVLPVSGKDTD 158
Query: 240 ESSNDIVELIHN 251
++ + + +
Sbjct: 159 QALQSAINALQS 170
>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 286
Score = 39.8 bits (92), Expect = 2e-04
Identities = 37/201 (18%), Positives = 61/201 (30%), Gaps = 25/201 (12%)
Query: 56 RKYPLIV-FEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMS-------------LREKF 101
K PL + F G G GKS TS + L S L E+F
Sbjct: 24 NKCPLFIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDDFYLTHEDQLKLNEQF 83
Query: 102 DAHDSLLRRAYYSLGNYIAAQDIKQDLQKQPVVMDRFWHSTSAYGMANELVKNSDLKLPD 161
+ L R + Q++ + D+ L K +
Sbjct: 84 KNNKLLQGRGLPGTHDMKLLQEVLNTIFNNNEHPDQ---------DTVVLPKYDKSQFKG 134
Query: 162 EDDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFRELLTTIYR 221
E D + K + D+ I N L + + NAK ++R
Sbjct: 135 EGDRCPTGQKIKLPVDIFILEGWFLGFNPILQGIENNDLLTGDMVDVNAKLFFYSDLLWR 194
Query: 222 N--MNNPELVFVDNSEKSVHE 240
N + + +VF ++ +V+
Sbjct: 195 NPEIKSLGIVFTTDNINNVYG 215
>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS
kinase) {Human (Homo sapiens) [TaxId: 9606]}
Length = 195
Score = 39.3 bits (90), Expect = 2e-04
Identities = 28/189 (14%), Positives = 58/189 (30%), Gaps = 23/189 (12%)
Query: 61 IVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKFDAHDSLLRRAYYSLGNYIA 120
+ GL G GK+ TV+ L+ L +L
Sbjct: 22 VWLTGLSGAGKT----TVSMALEEYLV-----------CHGIPCYTLDGDNIR----QGL 62
Query: 121 AQDIKQDLQKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVI 180
+++ + + + R + A + S + +D + + + + +
Sbjct: 63 NKNLGFSPEDREENVRRIAEVAKLFADAGLVCITSFISPYTQD---RNNARQIHEGASLP 119
Query: 181 YLTVSEAIRLQRLSRRKNFTLEENELKKNAKFRELLTTIYRNMNNPELVFVDNSEKSVHE 240
+ V L +R L + K + + Y PELV + V++
Sbjct: 120 FFEVFVDAPLHVCEQRDVKGLYKKARAGEIKGFTGIDSEYEKPEAPELV-LKTDSCDVND 178
Query: 241 SSNDIVELI 249
+VEL+
Sbjct: 179 CVQQVVELL 187
>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId:
9606]}
Length = 194
Score = 39.2 bits (90), Expect = 2e-04
Identities = 29/196 (14%), Positives = 70/196 (35%), Gaps = 12/196 (6%)
Query: 59 PLIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKFDAHDSLLR---RAYYSL 115
++ G G GK T ++ T S+ LR++ DS Y
Sbjct: 2 LVVFVLGGPGAGKG----TQCARIVEKYGYTHLSAGELLRDERKNPDSQYGELIEKYIKE 57
Query: 116 GNYIAAQDIKQDLQKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMK 175
G + + L+++ + + + +L+ ++ D + ++
Sbjct: 58 GKIVPVEITISLLKREMDQTMAANAQKNKFLIDGFPRNQDNLQGWNKTMDGKADVSFVLF 117
Query: 176 PDLVIYLTVSEAIRLQRLSRRKNFTLE--ENELKKNAKFRELLTTIYRNMNNPELVFVDN 233
D + + + + S R + E E ++ + + + +Y M + +D
Sbjct: 118 FDCNNEICIERCLERGKSSGRSDDNRESLEKRIQTYLQSTKPIIDLYEEMGK--VKKID- 174
Query: 234 SEKSVHESSNDIVELI 249
+ KSV E +++V++
Sbjct: 175 ASKSVDEVFDEVVQIF 190
>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId:
9823]}
Length = 194
Score = 38.4 bits (88), Expect = 3e-04
Identities = 35/202 (17%), Positives = 68/202 (33%), Gaps = 19/202 (9%)
Query: 56 RKYPLIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKFDAHDSLLRRAYYSL 115
+K +I G G GK T +K+ T S+ LR + + +
Sbjct: 6 KKSKIIFVVGGPGSGKG----TQCEKIVQKYGYTHLSTGDLLRAEVSSG--------SAR 53
Query: 116 GNYIAAQDIKQDLQKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMK 175
G ++ K L V+D + A ++ P E + + + +
Sbjct: 54 GKMLSEIMEKGQLVPLETVLDMLRDAMVAKVDTSKGF--LIDGYPREVKQGEEFERKIGQ 111
Query: 176 PDLVIYLTVSEAIRLQRLSRRKNF-----TLEENELKKNAKFRELLTTIYRNMNNPELVF 230
P L++Y+ +RL +R EE K+ + + + +V
Sbjct: 112 PTLLLYVDAGPETMTKRLLKRGETSGRVDDNEETIKKRLETYYKATEPVIAFYEKRGIVR 171
Query: 231 VDNSEKSVHESSNDIVELIHNL 252
N+E SV + + + + L
Sbjct: 172 KVNAEGSVDDVFSQVCTHLDTL 193
>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus
globisporus [TaxId: 1459]}
Length = 182
Score = 38.3 bits (88), Expect = 4e-04
Identities = 24/190 (12%), Positives = 57/190 (30%), Gaps = 16/190 (8%)
Query: 61 IVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKFDAHDSLLRRAYYSLGNYIA 120
IV GL G GK T A ++ + S+ R +++
Sbjct: 3 IVLMGLPGAGKG----TQADRIVEKYGTPHISTGDMFRAAIQEGTE----LGVKAKSFMD 54
Query: 121 AQDIKQDLQKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVI 180
+ D +V +R S G + P + + L I
Sbjct: 55 QGALVPDEVTIGIVRERLSKSDCDNGFLLDGF-------PRTVPQAEALDQLLADMGRKI 107
Query: 181 YLTVS-EAIRLQRLSRRKNFTLEENELKKNAKFRELLTTIYRNMNNPELVFVDNSEKSVH 239
++ + + + ++R + + + ++ E++ N +K +
Sbjct: 108 EHVLNIQVEKEELIARLTADDNPDTVTNRLEVNMNQTAPLLAFYDSKEVLVNINGQKDIK 167
Query: 240 ESSNDIVELI 249
+ D+ ++
Sbjct: 168 DVFKDLDVIL 177
>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR,
ribosylnicotinamide kinase domain {Haemophilus
influenzae [TaxId: 727]}
Length = 192
Score = 37.7 bits (86), Expect = 6e-04
Identities = 21/192 (10%), Positives = 49/192 (25%), Gaps = 20/192 (10%)
Query: 61 IVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKFDAHDSLLRRAYYSLGNYIA 120
+ G + GKS +A + + + D +
Sbjct: 10 VAILGGESSGKSVLVNKLAAVFNTTSAWEYGREFVFEKLGGDEQAMQYSDYPQMALGHQR 69
Query: 121 AQDIKQDLQKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVI 180
D + +D + +T A+ + + D+ I
Sbjct: 70 YIDYAVRHSHKIAFIDTDFITTQAFCIQ----------YEGKAHPFLDSMIKEYPFDVTI 119
Query: 181 YLTVSEAIRLQRLSRRKNFTLEENELKKNAKFRELLTTIYRNMNNPELVFVDNSEKSVHE 240
L + L + + F++LL + P +++ S +
Sbjct: 120 LLKNNTEWVDDGLRSLGSQKQRQQ-------FQQLLKKLLDKYKVP---YIEIESPSYLD 169
Query: 241 SSNDIVELIHNL 252
N + +I +
Sbjct: 170 RYNQVKAVIEKV 181
>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli
[TaxId: 562]}
Length = 169
Score = 37.0 bits (84), Expect = 7e-04
Identities = 26/189 (13%), Positives = 54/189 (28%), Gaps = 25/189 (13%)
Query: 61 IVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKFDAHDSLLRRAYYSLGNYIA 120
I G G GKS + +A++L + L +
Sbjct: 5 IFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQEIEKRTGADVGWVFDLEGEEGF---RDRE 61
Query: 121 AQDIKQDLQKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVI 180
+ I + +KQ +V+ S + N L + + +
Sbjct: 62 EKVINELTEKQGIVLATGGGSVKSRETRNRLSARGVVVYLETTIEKQLA----------- 110
Query: 181 YLTVSEAIRLQRLSRRKNFTLEENELKKNAKFRELLTTIYRNMNNPELVFVDNSEKSVHE 240
R QR +R +E + +Y + + V + ++S
Sbjct: 111 --------RTQRDKKRPLLHVETPPREVLEALANERNPLYEEIAD---VTIRTDDQSAKV 159
Query: 241 SSNDIVELI 249
+N I+ ++
Sbjct: 160 VANQIIHML 168
>d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo
sapiens) [TaxId: 9606]}
Length = 241
Score = 36.9 bits (84), Expect = 0.001
Identities = 29/224 (12%), Positives = 59/224 (26%), Gaps = 31/224 (13%)
Query: 60 LIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSI------------------MSLREKF 101
+ EG GKS + + K +T P + +L +
Sbjct: 4 RLSIEGNIAVGKSTFVKLLTKTYPEWHVATEPVATWQNIQAAGNQKACTAQSLGNLLDMM 63
Query: 102 DAHDSLLRRAYYSLGNYIAAQDIKQDLQK-------QPVVMDRFWHSTSAY--GMANELV 152
+ + + + + + + +R +S E
Sbjct: 64 YREPARWSYTFQTFSFLSRLKVQLEPFPEKLLQARKPVQIFERSVYSDRYIFAKNLFENG 123
Query: 153 KNSDLKLPDEDDDIYSWPKDLMKP---DLVIYLTVSEAIRLQRLSRRKNFTLEENELKKN 209
SD++ D + IYL S + L+RL +R + EL
Sbjct: 124 SLSDIEWHIYQDWHSFLLWEFASRITLHGFIYLQASPQVCLKRLYQRAREEEKGIELAYL 183
Query: 210 AKFREL-LTTIYRNMNNPELVFVDNSEKSVHESSNDIVELIHNL 252
+ + + N V + ++D E +
Sbjct: 184 EQLHGQHEAWLIHKTTKLHFEALMNIPVLVLDVNDDFSEEVTKQ 227
>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS
kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]}
Length = 208
Score = 36.3 bits (83), Expect = 0.002
Identities = 30/192 (15%), Positives = 62/192 (32%), Gaps = 20/192 (10%)
Query: 60 LIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKFDAHDSLLRRAYYSLGNYI 119
I GL GKS T+A +L+ L L L +
Sbjct: 26 TIWLTGLSASGKS----TLAVELEHQLVRDRRVHAYRLDGDNIRFG---------LNKDL 72
Query: 120 AAQDIKQDLQKQPVVMDRFWHSTSAYGMANELV--KNSDLKLPDEDDDIYSWPKDLMKPD 177
+ ++ + + + S + D + ++ + ++ P
Sbjct: 73 GFSEADRNENIRRIAEVAKLFADSNSIAITSFISPYRKDRDTARQLHEVATPGEETGLPF 132
Query: 178 LVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFRELLTTIYRNMNNPELVFVDNSEKS 237
+ +Y+ V + QR + E +K+ ++ Y NPE+ V N E
Sbjct: 133 VEVYVDVPVEVAEQRDPKGLYKKAREGVIKEFTG----ISAPYEAPANPEVH-VKNYELP 187
Query: 238 VHESSNDIVELI 249
V ++ I++ +
Sbjct: 188 VQDAVKQIIDYL 199
>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni
[TaxId: 197]}
Length = 161
Score = 34.9 bits (79), Expect = 0.004
Identities = 30/192 (15%), Positives = 54/192 (28%), Gaps = 37/192 (19%)
Query: 61 IVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKFDAHDSLLRRAYYSLGNYIA 120
IVF G G GKS T+A+ L L + I
Sbjct: 3 IVFIGFMGSGKS----TLARALAKDLD----------------------LVFLDSDFLIE 36
Query: 121 AQDIKQDLQKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVI 180
+ ++ + + F+ + +L K I
Sbjct: 37 QKFNQKVSEIFEQKRENFFREQEQKMADFFSSCEKACIATGGG---FVNVSNLEKAGFCI 93
Query: 181 YLTVSEAIRLQRLSRRKNFTLEENELKKNAKFRELLTT---IYRNMNNPELVFVDNSEKS 237
YL +RL K+ + K ++L Y N ++ K+
Sbjct: 94 YLKADFEYLKKRL--DKDEISKRPLFYDEIKAKKLYNERLSKYEQKAN---FILNIENKN 148
Query: 238 VHESSNDIVELI 249
+ E ++I ++I
Sbjct: 149 IDELLSEIKKVI 160
>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea
mays) [TaxId: 4577]}
Length = 189
Score = 34.5 bits (78), Expect = 0.006
Identities = 31/192 (16%), Positives = 65/192 (33%), Gaps = 19/192 (9%)
Query: 61 IVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKFDAHDSLLRRAYYSLGNYIA 120
++ G GK T + +K + S+ LR + A +RA ++
Sbjct: 6 VMISGAPASGKG----TQCELIKTKYQLAHISAGDLLRAEIAAGSENGKRAK----EFME 57
Query: 121 AQDIKQDLQKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVI 180
+ D +V +R N + + P + ++PD I
Sbjct: 58 KGQLVPDEIVVNMVKERLRQP---DAQENGWLLDGY---PRSYSQAMALETLEIRPDTFI 111
Query: 181 YLTVSEAIRLQRLSRRKNFTLEENELKKNAKFRELLTTIYRNMNNPELVFVDNSEKSVHE 240
L V + + ++R+ + L+ + E L + Y N ++ + +V
Sbjct: 112 LLDVPDELLVERVVFDDTEEKVKLRLETYYQNIESLLSTYEN-----IIVKVQGDATVDA 166
Query: 241 SSNDIVELIHNL 252
I EL+ ++
Sbjct: 167 VFAKIDELLGSI 178
>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 165
Score = 32.3 bits (72), Expect = 0.031
Identities = 31/194 (15%), Positives = 62/194 (31%), Gaps = 33/194 (17%)
Query: 59 PLIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKFDAHDSLLRRAYYSLGNY 118
P V GL G GKS T+ ++L +L D ++ +R S+ +
Sbjct: 2 PKAVLVGLPGSGKS----TIGRRLAKALG----------VGLLDTDVAIEQRTGRSIADI 47
Query: 119 IAAQDIKQDLQKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPDL 178
A ++ + + V+ + +
Sbjct: 48 FATDGEQEFRRIEEDVVRAALADHDGVLSLGGGAVT------------SPGVRAALAGHT 95
Query: 179 VIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFRELLTT---IYRNMNNPELVFVDNSE 235
V+YL +S A ++R L + K+R L+ +YR + + VD +
Sbjct: 96 VVYLEISAAEGVRRTGGNTVRPLLAGP-DRAEKYRALMAKRAPLYRRVAT---MRVDTNR 151
Query: 236 KSVHESSNDIVELI 249
++ I+ +
Sbjct: 152 RNPGAVVRHILSRL 165
>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus
stearothermophilus [TaxId: 1422]}
Length = 198
Score = 32.0 bits (71), Expect = 0.043
Identities = 21/154 (13%), Positives = 46/154 (29%), Gaps = 13/154 (8%)
Query: 59 PLIV-FEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKFDAHDSLLRRAYYSLGN 117
L++ +GL GK+ T+A +L +L+ S + + +
Sbjct: 22 RLVLGIDGLSRSGKT----TLANQLSQTLREQGISVCVFHMDDHIVERAKRYHTGNEEWF 77
Query: 118 YIAAQDIKQDL--------QKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSW 169
+ K + ++ + V SD + +
Sbjct: 78 EYYYLQWDVEWLTHQLFRQLKASHQLTLPFYDHETDTHSKRTVYLSDSDMIMIEGVFLQR 137
Query: 170 PKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEE 203
+ D V+YL IR R + + +++
Sbjct: 138 KEWRPFFDFVVYLDCPREIRFARENDQVKQNIQK 171
>d1bifa1 c.37.1.7 (A:37-249)
6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase,
kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 213
Score = 31.9 bits (71), Expect = 0.049
Identities = 10/31 (32%), Positives = 15/31 (48%)
Query: 60 LIVFEGLDGCGKSHTSQTVAKKLKASLKSTP 90
LIV GL GK++ S+ + + L T
Sbjct: 4 LIVMVGLPARGKTYISKKLTRYLNFIGVPTR 34
>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens),
isoenzyme 6 [TaxId: 9606]}
Length = 173
Score = 30.7 bits (68), Expect = 0.099
Identities = 26/196 (13%), Positives = 52/196 (26%), Gaps = 37/196 (18%)
Query: 59 PLIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKFDAHDSLLRRAYYSLGNY 118
P I+ G G GK+ T+ K+L + Y
Sbjct: 5 PNILLTGTPGVGKT----TLGKELASKSGL----------------------------KY 32
Query: 119 IAAQDIKQDLQKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPDL 178
I D+ ++ Q + + + + N + D +
Sbjct: 33 INVGDLAREEQLYDGYDEEYDCPILDEDRVVDELDNQMREGGVIVDYHGCDFFPERWFHI 92
Query: 179 VIYLTVSEAIRLQRLSRRKNFT---LEENELKKNAKFRELLTTIYRNMNNPELVFVDNSE 235
V L + +RL R + + + E T Y+ N
Sbjct: 93 VFVLRTDTNVLYERLETRGYNEKKLTDNIQCEIFQVLYEEATASYK--EEIVHQLPSNKP 150
Query: 236 KSVHESSNDIVELIHN 251
+ + + + I++ I
Sbjct: 151 EELENNVDQILKWIEQ 166
>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 180
Score = 30.7 bits (68), Expect = 0.11
Identities = 22/189 (11%), Positives = 52/189 (27%), Gaps = 16/189 (8%)
Query: 61 IVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKFDAHDSLLRRAYYSLGNYIA 120
+V G G GK T A L+ + ++ + + + + +
Sbjct: 5 MVLIGPPGAGKG----TQAPNLQERFHAA----HLATGDMLRSQIAKGTQLGLEAKKIMD 56
Query: 121 AQDIKQDLQKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVI 180
+ D ++ D + N + + + + + + K+ P
Sbjct: 57 QGGLVSDDIMVNMIKDELT---NNPACKNGFILDGFPRTIPQAEKLDQMLKEQGTPLEKA 113
Query: 181 YLTVSEAIRLQRLSRRKNFTLEENELKKNAKFRELLTTIYRNMNNPELVFVDNSEKSVHE 240
++R N + L E + Y+ VD + +
Sbjct: 114 IELKV--DDELLVARITNADALKKRLAAYHAQTEPIVDFYKKTGI--WAGVD-ASQPPAT 168
Query: 241 SSNDIVELI 249
DI+ +
Sbjct: 169 VWADILNKL 177
>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}
Length = 225
Score = 28.1 bits (61), Expect = 0.85
Identities = 25/217 (11%), Positives = 65/217 (29%), Gaps = 24/217 (11%)
Query: 59 PLIVFEGLDGCGKSHTSQTVAKKLKASLKST----------------PPSSIMSLREKFD 102
P+I +G G GK + +A+ L+ L + +S +L
Sbjct: 4 PVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYRVLALAALHHHVDVASEDALVPLAS 63
Query: 103 AHDSLLRRAYYSLGNYIAAQDIKQDLQKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDE 162
D +L + +D+ +++ Q V + L + +
Sbjct: 64 HLDVRFVSTNGNLEVILEGEDVSGEIRTQEVANAASQVAAFPRVREALLRRQRAFRELPG 123
Query: 163 DDDIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFRELLTTIYRN 222
++ PD + + + + + R ++ + E+ R+
Sbjct: 124 LIADGRDMGTVVFPDAPVKIFLDASSEERAHRRMLQLQVKGFSVNFERLLAEIKERDDRD 183
Query: 223 MNNP--------ELVFVDNSEKSVHESSNDIVELIHN 251
N + + +D++ S+ + ++
Sbjct: 184 RNRAVAPLVPAADALVLDSTTLSIEQVIEKALQYARQ 220
>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta,
toxin zeta subunit {Streptococcus pyogenes [TaxId:
1314]}
Length = 273
Score = 28.0 bits (61), Expect = 1.00
Identities = 17/190 (8%), Positives = 52/190 (27%), Gaps = 3/190 (1%)
Query: 60 LIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKFDAHDSLLRRAYYSLGNYI 119
+ G G GK+ + ++ + ++ + FD L +
Sbjct: 34 AFLLGGQPGSGKTSLRSAIFEETQGNVIVIDNDTFKQQHPNFDELVKLYEKDVVKHVTPY 93
Query: 120 AAQDIKQDLQKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPDLV 179
+ + + + + + + G ++ + L + + + + K +
Sbjct: 94 SNRMTEAIISR--LSDQGYNLVIEGTGRTTDVPIQTATMLQAKGYETKMYVMAVPKINSY 151
Query: 180 IYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFRELLTTIYRNMNNPELVFVDNSEKSVH 239
+ T ++ L T+++ + + N E
Sbjct: 152 LGTIERYETMYADDPMTARATPKQAHDIVVKNLPTNLETLHK-TGLFSDIRLYNREGVKL 210
Query: 240 ESSNDIVELI 249
SS + +
Sbjct: 211 YSSLETPSIS 220
>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3'
phosphatase, C-terminal domain {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 172
Score = 27.5 bits (60), Expect = 1.1
Identities = 8/36 (22%), Positives = 13/36 (36%), Gaps = 4/36 (11%)
Query: 60 LIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIM 95
++V G G GKS T ++ S +
Sbjct: 16 VVVAVGFPGAGKS----TFIQEHLVSAGYVHVNRDT 47
>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia
chrysanthemi [TaxId: 556]}
Length = 170
Score = 27.2 bits (59), Expect = 1.6
Identities = 7/23 (30%), Positives = 11/23 (47%)
Query: 61 IVFEGLDGCGKSHTSQTVAKKLK 83
I G GCG + + +A+ L
Sbjct: 5 IFMVGARGCGMTTVGRELARALG 27
>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 186
Score = 27.2 bits (59), Expect = 1.6
Identities = 35/192 (18%), Positives = 60/192 (31%), Gaps = 12/192 (6%)
Query: 60 LIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKFDAHDSLLRRAYYSLGNYI 119
IV G G GKS T+ KKL A + S+ S A + + + +
Sbjct: 3 PIVISGPSGTGKS----TLLKKLFAEYPDSFGFSVSSTTRTPRAGEVNGKDYNFVSVDEF 58
Query: 120 AAQDIKQDLQKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPDLV 179
+ + + ++ ST A + + D + +
Sbjct: 59 KSMIKNNEFIEWAQFSGNYYGSTVASVKQVSKSGKTCILDIDMQGVKSVKAIPELNARFL 118
Query: 180 IYLTVSEAIRLQRLSRRKNFTLEENELKKNAKFRELLTTIYRNMNNPELVFV-DNSEKSV 238
S +RL R T E + +A EL Y + V V D+ +K+
Sbjct: 119 FIAPPSVEDLKKRLEGRGTETEESINKRLSAAQAELA---YAETGAHDKVIVNDDLDKAY 175
Query: 239 HESSNDIVELIH 250
E + + I
Sbjct: 176 KE----LKDFIF 183
>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides
[TaxId: 1063]}
Length = 288
Score = 26.8 bits (59), Expect = 2.3
Identities = 20/170 (11%), Positives = 41/170 (24%), Gaps = 33/170 (19%)
Query: 56 RKYPLIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIM--------SLREKFDAHDSL 107
+K+P+I G G G S TV + ++ R A
Sbjct: 2 KKHPIISVTGSSGAGTS----TVKHTFDQIFRREGVKAVSIEGDAFHRFNRADMKAELDR 57
Query: 108 LRRAYYSLGNYIA---------AQDIKQDLQKQPVVM---DRFWHSTSAYGMANELVKNS 155
A + ++ + + ++ + + G+A +
Sbjct: 58 RYAAGDATFSHFSYEANELKELERVFREYGETGQGRTRTYVHDDAEAARTGVAPGNFTDW 117
Query: 156 DLKLPDEDDDIYSWPKDLMKP---------DLVIYLTVSEAIRLQRLSRR 196
D Y + DL I + + + R
Sbjct: 118 RDFDSDSHLLFYEGLHGAVVNSEVNIAGLADLKIGVVPVINLEWIQKIHR 167
>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH
{Escherichia coli [TaxId: 562]}
Length = 256
Score = 26.7 bits (59), Expect = 2.9
Identities = 7/36 (19%), Positives = 16/36 (44%)
Query: 61 IVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMS 96
++ G G GK+ ++ +A + K + S +
Sbjct: 48 VLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVE 83
>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos
taurus), mitochondrial izozyme-3 [TaxId: 9913]}
Length = 189
Score = 26.3 bits (57), Expect = 3.1
Identities = 29/191 (15%), Positives = 43/191 (22%), Gaps = 23/191 (12%)
Query: 61 IVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKFDAHDSLLRRAYYSLGNYIA 120
G G GK S + K + S+ LLR
Sbjct: 9 AAIMGAPGSGKGTVSSRITKHFELKHLSS---------------GDLLRDNMLRGTEIGV 53
Query: 121 AQDIKQDLQKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVI 180
D K + D + D VI
Sbjct: 54 LAKTFIDQGKLIPDDVMTRLVLHELKNLTQYNWLLDGFPRTLPQAEALDR--AYQIDTVI 111
Query: 181 YLTVSEAIRLQRLSRRKNFTLEENELKKNAKFRELLTTIYRNMNNPELVFVDNSEKSVHE 240
L V + QRL+ R + LK E + YR L +E ++
Sbjct: 112 NLNVPFEVIKQRLTDRPETVV--KRLKAYEAQTEPVLEYYRKKGV--LETFSGTE--TNK 165
Query: 241 SSNDIVELIHN 251
+ +
Sbjct: 166 IWPHVYAFLQT 176
>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH
{Thermus thermophilus [TaxId: 274]}
Length = 247
Score = 26.3 bits (58), Expect = 3.7
Identities = 8/36 (22%), Positives = 17/36 (47%)
Query: 61 IVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMS 96
++ G G GK+H ++ VA + + + S +
Sbjct: 45 VLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVE 80
>d1g43a_ b.2.2.2 (A:) Cellusomal scaffolding protein A, scaffoldin
{Clostridium cellulolyticum [TaxId: 1521]}
Length = 160
Score = 25.6 bits (56), Expect = 4.0
Identities = 6/35 (17%), Positives = 13/35 (37%)
Query: 171 KDLMKPDLVIYLTVSEAIRLQRLSRRKNFTLEENE 205
+ + + T I L L R +T + ++
Sbjct: 19 SNSIYARFKVTNTSGSPINLADLKLRYYYTQDADK 53
>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 182
Score = 25.3 bits (54), Expect = 6.7
Identities = 16/146 (10%), Positives = 37/146 (25%), Gaps = 8/146 (5%)
Query: 60 LIVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKFDAHDSLLRRAYYSLGNYI 119
++V G GKS + + +++ S ++ + D D
Sbjct: 4 VVVLSGPSAVGKSTVVRCLRERIPNLHFSVSATTRAPRPGEVDGVDYHFIDPTR------ 57
Query: 120 AAQDIKQDLQKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPDLV 179
D + + + +A + + +P + + + + K
Sbjct: 58 --FQQLIDQGELLEWAEIHGGLHRSGTLAQPVRAAAATGVPVLIEVDLAGARAIKKTMPE 115
Query: 180 IYLTVSEAIRLQRLSRRKNFTLEENE 205
Q L R E
Sbjct: 116 AVTVFLAPPSWQDLQARLIGRGTETA 141
>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos
taurus), mitochondrial izozyme-2 [TaxId: 9913]}
Length = 190
Score = 25.3 bits (54), Expect = 7.5
Identities = 20/192 (10%), Positives = 53/192 (27%), Gaps = 15/192 (7%)
Query: 61 IVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKFDAHDSLLRRAYYSLGNYIA 120
V G G GK T A KL + + + A S L + + +
Sbjct: 6 AVLLGPPGAGKG----TQAPKLAKNFCV-CHLATGDMLRAMVASGSELGKKLKATMDA-- 58
Query: 121 AQDIKQDLQKQPVVMDRFWHSTSAYGMANELVKNSDLKLPDEDDDIYSWPKDLMKPDLVI 180
L +V++ + N + + + + + + + + +
Sbjct: 59 -----GKLVSDEMVLELIEKNLETPPCKNGFLLDGFPRTVRQAEMLDDLMEKRKEKLDSV 113
Query: 181 YLTVSEAIRLQRLSRRKNFTLEENE---LKKNAKFRELLTTIYRNMNNPELVFVDNSEKS 237
L R + ++N+ + + T + + + ++ ++
Sbjct: 114 IEFSIPDSLLIRRITGRLIHSDDNKKALKIRLEAYHTQTTPLVEYYSKRGIHSAIDASQT 173
Query: 238 VHESSNDIVELI 249
I+
Sbjct: 174 PDVVFASILAAF 185
>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein
Aq_1292 {Aquifex aeolicus [TaxId: 63363]}
Length = 178
Score = 25.0 bits (53), Expect = 7.8
Identities = 19/180 (10%), Positives = 43/180 (23%), Gaps = 23/180 (12%)
Query: 61 IVFEGLDGCGKSHTSQTVAKKLKASLKSTPPSSIMSLREKFDAHDSLLRRAYY--SLGNY 118
I+ G G GK+ T+ KK+ L + R
Sbjct: 3 IIITGEPGVGKT----TLVKKIVERLGKRAIGFWTEEVRDPETKKRTGFRIITTEGKKKI 58
Query: 119 IAAQDIKQDLQKQPVVMDRFWHSTSA-----YGMANELVKNSDLKLPDEDD--------- 164
+++ ++ + A + + DE
Sbjct: 59 FSSKFFTSKKLVGSYGVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKF 118
Query: 165 --DIYSWPKDLMKPDLVIYLTVSEAIRLQRLSRRKNFTL-EENELKKNAKFRELLTTIYR 221
+ D + ++ + R L E ++ ++L+ + R
Sbjct: 119 RDLVRQIMHDPNVNVVATIPIRDVHPLVKEIRRLPGAVLIELTPENRDVILEDILSLLER 178
>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide
biosynthesis protein MobB {Escherichia coli [TaxId:
562]}
Length = 170
Score = 24.9 bits (53), Expect = 8.8
Identities = 8/26 (30%), Positives = 12/26 (46%)
Query: 59 PLIVFEGLDGCGKSHTSQTVAKKLKA 84
PL+ F G GK+ + + L A
Sbjct: 3 PLLAFAAWSGTGKTTLLKKLIPALCA 28
>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence
recognition protein Ffh {Archaeon Acidianus ambivalens
[TaxId: 2283]}
Length = 211
Score = 25.1 bits (54), Expect = 9.2
Identities = 11/42 (26%), Positives = 20/42 (47%)
Query: 47 DQDSGVGDDRKYPLIVFEGLDGCGKSHTSQTVAKKLKASLKS 88
D++ V D+ +I+ G+ G GK+ T+ +A K
Sbjct: 1 DKEPKVIPDKIPYVIMLVGVQGTGKATTAGKLAYFYKKKGFK 42
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.314 0.131 0.365
Gapped
Lambda K H
0.267 0.0449 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 916,761
Number of extensions: 41468
Number of successful extensions: 217
Number of sequences better than 10.0: 1
Number of HSP's gapped: 209
Number of HSP's successfully gapped: 68
Length of query: 259
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 176
Effective length of database: 1,268,006
Effective search space: 223169056
Effective search space used: 223169056
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 52 (24.5 bits)