Query psy16564
Match_columns 157
No_of_seqs 119 out of 1099
Neff 5.6
Searched_HMMs 29240
Date Sat Aug 17 00:25:10 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16564.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/16564hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xzm_U Ribosomal protein L7AE 100.0 2.4E-32 8.1E-37 205.8 9.7 111 28-138 1-111 (126)
2 3u5c_M 40S ribosomal protein S 100.0 2.1E-31 7E-36 204.9 7.8 111 31-141 20-132 (143)
3 2ale_A SNU13, NHP2/L7AE family 99.9 1.2E-27 4E-32 181.9 11.7 107 20-139 3-109 (134)
4 3o85_A Ribosomal protein L7AE; 99.9 2.3E-27 7.7E-32 177.5 11.5 106 20-138 2-107 (122)
5 3iz5_f 60S ribosomal protein L 99.9 9.8E-28 3.4E-32 177.4 9.3 102 34-148 10-112 (112)
6 2aif_A Ribosomal protein L7A; 99.9 1.3E-26 4.6E-31 175.9 12.8 114 17-143 9-122 (135)
7 2jnb_A NHP2-like protein 1; sp 99.9 1.2E-27 4.2E-32 183.9 7.1 114 17-143 18-131 (144)
8 4a18_G RPL30; ribosome, eukary 99.9 2.2E-27 7.6E-32 172.5 7.7 97 35-144 7-104 (104)
9 3on1_A BH2414 protein; structu 99.9 1.1E-26 3.8E-31 167.8 10.0 98 33-144 1-98 (101)
10 3u5e_c L32, RP73, YL38, 60S ri 99.9 5.4E-27 1.8E-31 170.9 7.5 97 35-144 7-104 (105)
11 2lbw_A H/ACA ribonucleoprotein 99.9 2.2E-26 7.6E-31 171.5 10.4 105 35-155 4-108 (121)
12 3j21_Z 50S ribosomal protein L 99.9 1.9E-26 6.4E-31 166.0 8.8 91 41-143 5-96 (99)
13 3v7q_A Probable ribosomal prot 99.9 3.3E-26 1.1E-30 165.6 9.7 93 38-143 6-98 (101)
14 1vq8_F 50S ribosomal protein L 99.9 1.3E-25 4.5E-30 166.8 11.3 109 23-143 2-110 (120)
15 2fc3_A 50S ribosomal protein L 99.9 2E-25 6.9E-30 166.7 11.3 103 31-144 8-110 (124)
16 1rlg_A 50S ribosomal protein L 99.9 1.8E-25 6E-30 165.8 10.5 102 31-143 7-108 (119)
17 1w41_A 50S ribosomal protein L 99.9 7.7E-25 2.6E-29 157.9 10.0 91 40-142 5-96 (101)
18 3cpq_A 50S ribosomal protein L 99.9 1.3E-24 4.4E-29 159.3 9.3 93 38-142 8-101 (110)
19 2kg4_A Growth arrest and DNA-d 99.9 3.1E-24 1E-28 168.3 10.0 106 30-138 13-133 (165)
20 1xbi_A 50S ribosomal protein L 99.9 4.4E-24 1.5E-28 158.9 8.5 99 30-142 11-109 (120)
21 3vi6_A 60S ribosomal protein L 99.9 2.3E-23 8E-28 156.4 6.8 98 35-145 12-110 (125)
22 3v7e_A Ribosome-associated pro 99.9 1.5E-22 5.1E-27 141.6 9.8 79 43-133 3-81 (82)
23 3cg6_A Growth arrest and DNA-d 99.8 8.3E-21 2.8E-25 145.9 11.0 103 31-138 4-115 (146)
24 2zkr_f 60S ribosomal protein L 99.8 1.3E-20 4.6E-25 157.0 6.2 97 48-156 132-228 (266)
25 3jyw_G 60S ribosomal protein L 99.8 2E-20 6.9E-25 138.6 4.7 80 48-139 22-101 (113)
26 4a17_F RPL7A, 60S ribosomal pr 99.8 7.5E-20 2.5E-24 151.5 8.1 94 51-156 124-217 (255)
27 3izc_H 60S ribosomal protein R 99.8 2.9E-20 1E-24 154.1 5.2 93 52-156 132-224 (256)
28 3ffm_A Growth arrest and DNA-d 99.8 7.7E-19 2.6E-23 137.3 10.5 104 30-138 24-136 (167)
29 3iz5_H 60S ribosomal protein L 99.8 4.4E-19 1.5E-23 146.7 6.5 94 51-156 127-220 (258)
30 3ir9_A Peptide chain release f 95.5 0.088 3E-06 40.4 8.9 64 47-110 42-149 (166)
31 3oby_A Protein pelota homolog; 94.9 0.083 2.8E-06 45.1 7.9 72 39-111 253-332 (352)
32 1x52_A Pelota homolog, CGI-17; 93.3 0.16 5.4E-06 37.2 5.6 73 37-110 23-103 (124)
33 3j15_A Protein pelota; ribosom 93.0 0.29 9.8E-06 41.6 7.5 73 38-111 266-346 (357)
34 3agk_A Peptide chain release f 93.0 0.36 1.2E-05 40.8 8.1 67 38-107 285-352 (373)
35 3e20_C Eukaryotic peptide chai 91.7 0.93 3.2E-05 39.7 9.3 73 38-110 291-409 (441)
36 2qi2_A Pelota, cell division p 91.3 0.39 1.3E-05 40.7 6.4 71 38-110 253-324 (347)
37 1gz0_A Hypothetical tRNA/RRNA 89.7 1.1 3.7E-05 36.1 7.4 61 51-113 13-75 (253)
38 3nk6_A 23S rRNA methyltransfer 89.5 1.3 4.3E-05 36.3 7.7 57 52-112 36-93 (277)
39 3agj_B Protein pelota homolog; 89.0 0.92 3.1E-05 38.4 6.7 73 38-110 258-337 (358)
40 3obw_A Protein pelota homolog; 88.0 1.1 3.8E-05 38.2 6.7 71 38-108 271-347 (364)
41 2vgn_A DOM34; translation term 87.0 2.8 9.6E-05 35.8 8.6 73 38-110 283-362 (386)
42 1b93_A Protein (methylglyoxal 85.6 1.8 6.2E-05 32.8 6.0 45 55-99 70-118 (152)
43 3mca_B Protein DOM34, elongati 85.0 2.7 9.2E-05 36.1 7.5 73 38-110 277-356 (390)
44 1dt9_A ERF1, protein (eukaryot 84.4 2.8 9.7E-05 36.1 7.4 63 47-109 296-401 (437)
45 2xw6_A MGS, methylglyoxal synt 84.3 1.2 4.2E-05 33.1 4.4 48 54-101 61-112 (134)
46 1ipa_A RRMH, RNA 2'-O-ribose m 83.3 3.7 0.00013 33.4 7.3 61 51-113 29-91 (274)
47 1vmd_A MGS, methylglyoxal synt 82.6 2.1 7.3E-05 33.3 5.3 77 55-145 86-167 (178)
48 3nkl_A UDP-D-quinovosamine 4-d 80.2 2.7 9.2E-05 29.4 4.8 55 52-106 50-104 (141)
49 2ohw_A YUEI protein; structura 74.3 10 0.00036 27.9 6.7 45 57-102 53-97 (133)
50 2yvq_A Carbamoyl-phosphate syn 72.8 3.7 0.00013 30.1 3.9 43 57-99 86-130 (143)
51 2l82_A Designed protein OR32; 67.0 17 0.00058 26.8 6.3 53 57-110 16-68 (162)
52 2ioj_A Hypothetical protein AF 63.8 23 0.0008 25.1 6.6 77 28-111 34-116 (139)
53 3tsm_A IGPS, indole-3-glycerol 55.3 54 0.0018 26.6 8.1 69 54-136 130-199 (272)
54 1jdq_A TM006 protein, hypothet 49.0 33 0.0011 23.5 5.1 40 58-101 42-84 (98)
55 3f6p_A Transcriptional regulat 48.8 39 0.0013 21.9 5.3 64 35-101 14-80 (120)
56 2lqo_A Putative glutaredoxin R 48.8 45 0.0015 22.3 5.6 19 83-101 17-35 (92)
57 2ggt_A SCO1 protein homolog, m 46.9 66 0.0023 21.9 7.3 47 66-113 60-110 (164)
58 3mfq_A TROA, high-affinity zin 46.5 23 0.0008 28.4 4.5 24 77-101 196-219 (282)
59 3bzy_B ESCU; auto cleavage pro 46.2 14 0.00049 25.0 2.7 35 72-111 20-54 (83)
60 3cf4_G Acetyl-COA decarboxylas 45.1 51 0.0017 24.2 5.9 41 61-101 29-69 (170)
61 1ytl_A Acetyl-COA decarboxylas 43.9 23 0.00077 26.9 3.8 48 51-101 20-68 (174)
62 4a29_A Engineered retro-aldol 41.6 81 0.0028 25.7 7.0 73 51-137 111-184 (258)
63 3grc_A Sensor protein, kinase; 41.4 64 0.0022 21.2 5.6 72 35-109 18-95 (140)
64 3nav_A Tryptophan synthase alp 40.2 1.2E+02 0.0041 24.4 7.9 75 33-111 79-171 (271)
65 1x7o_A Avirb, rRNA methyltrans 39.5 63 0.0021 26.1 6.1 58 51-112 41-99 (287)
66 3vus_A Poly-beta-1,6-N-acetyl- 39.2 94 0.0032 24.5 7.0 65 38-102 32-99 (268)
67 3gt7_A Sensor protein; structu 38.7 53 0.0018 22.4 4.9 64 35-101 19-88 (154)
68 3i42_A Response regulator rece 38.3 49 0.0017 21.4 4.5 65 35-102 15-85 (127)
69 1d2f_A MALY protein; aminotran 37.6 72 0.0025 25.2 6.1 46 56-101 151-202 (390)
70 2j48_A Two-component sensor ki 37.5 47 0.0016 20.7 4.2 64 35-101 13-82 (119)
71 3ib7_A ICC protein; metallopho 37.4 49 0.0017 25.6 5.0 38 66-103 65-109 (330)
72 3qja_A IGPS, indole-3-glycerol 37.4 96 0.0033 24.9 6.9 58 52-110 121-179 (272)
73 3lvj_C Sulfurtransferase TUSA; 37.2 57 0.002 21.2 4.6 39 59-101 27-68 (82)
74 1ivn_A Thioesterase I; hydrola 37.2 94 0.0032 21.9 6.2 45 57-101 89-140 (190)
75 1c7n_A Cystalysin; transferase 36.9 71 0.0024 25.3 6.0 46 56-101 153-204 (399)
76 2vt1_B Surface presentation of 36.7 18 0.00061 25.1 2.0 35 72-111 20-54 (93)
77 3av3_A Phosphoribosylglycinami 36.7 67 0.0023 24.7 5.6 41 57-101 18-60 (212)
78 2gkg_A Response regulator homo 36.7 59 0.002 20.6 4.6 63 35-100 17-86 (127)
79 3eod_A Protein HNR; response r 36.7 74 0.0025 20.6 5.2 64 35-101 19-86 (130)
80 3p9d_H T-complex protein 1 sub 36.6 48 0.0017 29.5 5.4 51 57-112 285-338 (568)
81 3h5i_A Response regulator/sens 36.6 87 0.003 20.7 5.7 66 35-103 17-87 (140)
82 3kht_A Response regulator; PSI 36.4 67 0.0023 21.3 5.1 65 35-102 17-89 (144)
83 1tp9_A Peroxiredoxin, PRX D (t 35.6 63 0.0022 22.7 5.0 51 58-113 61-115 (162)
84 3erw_A Sporulation thiol-disul 35.5 68 0.0023 21.1 4.9 52 61-113 61-113 (145)
85 2rjn_A Response regulator rece 34.7 72 0.0025 21.5 5.1 67 35-104 19-89 (154)
86 1knx_A Probable HPR(Ser) kinas 34.6 29 0.00098 28.8 3.3 40 59-101 75-114 (312)
87 3ecd_A Serine hydroxymethyltra 34.6 35 0.0012 27.3 3.7 45 57-101 162-207 (425)
88 3aq1_B Thermosome subunit; gro 34.3 62 0.0021 28.2 5.6 52 57-113 228-282 (500)
89 3gbx_A Serine hydroxymethyltra 34.2 42 0.0014 26.7 4.2 45 57-101 159-204 (420)
90 2a9o_A Response regulator; ess 33.9 73 0.0025 20.1 4.7 47 55-101 33-79 (120)
91 3iyg_A T-complex protein 1 sub 33.8 75 0.0026 27.9 6.1 50 58-112 267-319 (529)
92 3iyg_B T-complex protein 1 sub 33.8 77 0.0026 27.7 6.1 49 59-112 265-316 (513)
93 3uhf_A Glutamate racemase; str 33.8 34 0.0012 27.7 3.6 39 59-100 78-116 (274)
94 3qel_B Glutamate [NMDA] recept 33.8 75 0.0026 25.7 5.7 45 57-101 53-97 (364)
95 3p9d_A T-complex protein 1 sub 33.6 43 0.0015 29.8 4.5 51 58-113 283-336 (559)
96 3ist_A Glutamate racemase; str 33.5 42 0.0015 26.9 4.1 40 58-100 58-97 (269)
97 3zy2_A Putative GDP-fucose pro 33.4 31 0.0011 29.6 3.4 41 59-101 271-311 (362)
98 1zgz_A Torcad operon transcrip 33.2 63 0.0022 20.6 4.3 64 35-101 14-80 (122)
99 3g0t_A Putative aminotransfera 33.1 84 0.0029 25.2 5.9 45 57-101 172-222 (437)
100 1i4n_A Indole-3-glycerol phosp 32.9 1.6E+02 0.0056 23.4 7.5 72 52-137 110-182 (251)
101 3cg0_A Response regulator rece 32.6 96 0.0033 20.2 5.3 75 34-111 20-102 (140)
102 2qr3_A Two-component system re 32.6 71 0.0024 20.8 4.6 50 53-102 33-88 (140)
103 4fo4_A Inosine 5'-monophosphat 32.6 2.2E+02 0.0075 23.8 8.9 76 33-109 79-166 (366)
104 3p9d_D T-complex protein 1 sub 32.1 82 0.0028 27.7 6.0 50 59-113 274-331 (528)
105 2lnd_A De novo designed protei 31.8 1.3E+02 0.0044 20.8 6.1 55 55-110 39-95 (112)
106 3dnf_A ISPH, LYTB, 4-hydroxy-3 31.6 68 0.0023 26.6 5.1 50 57-108 200-249 (297)
107 3c01_E Surface presentation of 31.6 20 0.00068 25.1 1.6 34 73-111 21-54 (98)
108 2l2q_A PTS system, cellobiose- 31.4 65 0.0022 21.9 4.3 47 53-103 39-85 (109)
109 1jkx_A GART;, phosphoribosylgl 31.4 76 0.0026 24.5 5.1 42 56-101 14-57 (212)
110 1a6d_B Thermosome (beta subuni 31.4 68 0.0023 28.2 5.4 50 58-112 276-328 (543)
111 3psh_A Protein HI_1472; substr 31.4 80 0.0027 24.8 5.4 37 60-101 77-113 (326)
112 3cnb_A DNA-binding response re 31.2 72 0.0025 20.8 4.5 65 35-101 20-91 (143)
113 3s81_A Putative aspartate race 30.9 35 0.0012 27.4 3.2 43 54-100 86-128 (268)
114 1qkk_A DCTD, C4-dicarboxylate 30.9 85 0.0029 21.1 4.9 68 34-104 14-85 (155)
115 3cg4_A Response regulator rece 30.8 83 0.0029 20.6 4.8 66 35-103 19-90 (142)
116 3iyg_E T-complex protein 1 sub 30.7 99 0.0034 27.0 6.3 49 59-112 266-317 (515)
117 2rdm_A Response regulator rece 30.7 1.1E+02 0.0037 19.6 5.8 64 35-101 17-86 (132)
118 3hp4_A GDSL-esterase; psychrot 30.5 95 0.0032 21.6 5.2 44 58-101 94-144 (185)
119 1a6d_A Thermosome (alpha subun 30.3 62 0.0021 28.6 5.0 50 58-112 275-327 (545)
120 1wn2_A Peptidyl-tRNA hydrolase 30.2 1.5E+02 0.005 21.0 6.8 68 57-142 45-112 (121)
121 2zay_A Response regulator rece 30.1 79 0.0027 20.9 4.6 64 35-101 20-89 (147)
122 3out_A Glutamate racemase; str 30.1 45 0.0015 26.7 3.7 40 58-100 60-100 (268)
123 3hdg_A Uncharacterized protein 30.1 54 0.0019 21.5 3.6 65 35-102 19-87 (137)
124 3ixr_A Bacterioferritin comigr 29.9 57 0.002 23.4 4.0 52 57-113 75-127 (179)
125 3h5n_A MCCB protein; ubiquitin 29.8 69 0.0024 26.5 4.9 35 66-101 207-241 (353)
126 3t7y_A YOP proteins translocat 29.5 22 0.00077 24.8 1.6 27 81-110 42-68 (97)
127 2b9s_B DNA topoisomerase I-lik 29.3 12 0.00041 24.4 0.1 23 86-108 28-50 (62)
128 2rli_A SCO2 protein homolog, m 29.2 1.3E+02 0.0045 20.5 5.8 47 66-113 63-113 (171)
129 3hdv_A Response regulator; PSI 29.1 1E+02 0.0034 20.1 4.9 64 35-101 19-88 (136)
130 1rlk_A Hypothetical protein TA 28.9 1.5E+02 0.0051 20.7 6.2 68 57-142 41-108 (117)
131 1zuw_A Glutamate racemase 1; ( 28.8 38 0.0013 26.9 3.1 41 57-100 55-96 (272)
132 3nhm_A Response regulator; pro 28.5 95 0.0032 20.0 4.6 50 53-102 33-85 (133)
133 3drn_A Peroxiredoxin, bacterio 28.4 83 0.0028 21.8 4.6 50 59-113 55-105 (161)
134 2gzm_A Glutamate racemase; enz 28.2 45 0.0015 26.3 3.4 40 58-100 56-95 (267)
135 3tha_A Tryptophan synthase alp 27.9 1.8E+02 0.0063 23.2 7.0 88 23-113 50-164 (252)
136 1je3_A EC005, hypothetical 8.6 27.5 39 0.0013 23.2 2.5 40 58-101 43-85 (97)
137 2k6v_A Putative cytochrome C o 27.5 1.3E+02 0.0044 20.6 5.4 45 67-112 72-120 (172)
138 3jte_A Response regulator rece 27.4 1.2E+02 0.004 19.9 5.0 65 35-102 15-85 (143)
139 1xty_A PTH, peptidyl-tRNA hydr 27.3 1.6E+02 0.0056 20.6 6.6 66 59-142 46-111 (120)
140 1q3q_A Thermosome alpha subuni 27.1 70 0.0024 28.2 4.7 51 58-113 278-331 (548)
141 3lua_A Response regulator rece 27.0 79 0.0027 20.8 4.1 65 35-101 16-88 (140)
142 2qsj_A DNA-binding response re 27.0 1E+02 0.0036 20.5 4.8 67 35-103 15-87 (154)
143 1xhf_A DYE resistance, aerobic 26.8 96 0.0033 19.7 4.4 47 55-101 35-81 (123)
144 3bzs_A ESCU; auto cleavage pro 26.7 35 0.0012 25.2 2.3 34 73-111 75-108 (137)
145 1pq4_A Periplasmic binding pro 26.6 1E+02 0.0036 24.6 5.4 26 75-101 219-244 (291)
146 2jli_A YSCU, YOP proteins tran 26.3 36 0.0012 24.7 2.3 34 73-111 65-98 (123)
147 3t6k_A Response regulator rece 26.3 1.4E+02 0.0047 19.7 5.2 66 35-103 16-87 (136)
148 2vvt_A Glutamate racemase; iso 26.2 51 0.0017 26.5 3.4 41 58-101 77-117 (290)
149 3md9_A Hemin-binding periplasm 26.2 1.7E+02 0.0059 21.9 6.4 50 60-113 52-111 (255)
150 3gkn_A Bacterioferritin comigr 26.1 63 0.0021 22.3 3.5 51 58-113 60-111 (163)
151 3szu_A ISPH, 4-hydroxy-3-methy 26.1 71 0.0024 26.9 4.3 49 58-108 217-265 (328)
152 3mwd_B ATP-citrate synthase; A 26.0 82 0.0028 26.3 4.7 40 57-97 94-134 (334)
153 3h7r_A Aldo-keto reductase; st 26.0 87 0.003 25.4 4.8 68 33-101 150-223 (331)
154 4e7p_A Response regulator; DNA 25.9 88 0.003 21.0 4.2 50 53-102 52-102 (150)
155 2jlj_A YSCU, YOP proteins tran 25.8 37 0.0013 25.3 2.3 27 82-111 81-107 (144)
156 1uf3_A Hypothetical protein TT 25.8 91 0.0031 22.4 4.5 39 62-101 27-70 (228)
157 1pii_A N-(5'phosphoribosyl)ant 25.8 1.7E+02 0.0056 25.5 6.8 71 53-137 117-188 (452)
158 4ds3_A Phosphoribosylglycinami 25.7 1.2E+02 0.0041 23.4 5.4 39 59-101 24-64 (209)
159 1tx2_A DHPS, dihydropteroate s 25.6 2.7E+02 0.0093 22.6 8.8 85 12-102 78-167 (297)
160 3nra_A Aspartate aminotransfer 25.6 1.1E+02 0.0039 24.0 5.4 44 57-101 170-219 (407)
161 3n53_A Response regulator rece 25.6 45 0.0015 22.1 2.6 70 35-105 15-87 (140)
162 2h9a_B CO dehydrogenase/acetyl 25.5 2.1E+02 0.007 23.5 7.1 82 12-102 89-181 (310)
163 1svv_A Threonine aldolase; str 25.5 1.1E+02 0.0038 23.4 5.2 46 57-102 129-185 (359)
164 2ywr_A Phosphoribosylglycinami 25.4 1.1E+02 0.0038 23.5 5.1 41 57-101 16-58 (216)
165 2oho_A Glutamate racemase; iso 25.3 54 0.0019 25.9 3.4 39 59-100 66-104 (273)
166 2oqx_A Tryptophanase; lyase, p 25.2 93 0.0032 25.3 4.9 35 66-100 182-223 (467)
167 3auf_A Glycinamide ribonucleot 25.1 1E+02 0.0035 24.1 4.9 40 58-101 38-79 (229)
168 3h7u_A Aldo-keto reductase; st 25.1 93 0.0032 25.3 4.8 68 33-101 154-227 (335)
169 1pav_A Hypothetical protein TA 24.9 34 0.0012 22.0 1.7 38 58-99 22-62 (78)
170 3ilh_A Two component response 24.9 1E+02 0.0035 20.1 4.3 50 53-102 41-100 (146)
171 3iyg_D T-complex protein 1 sub 24.8 1.4E+02 0.0046 26.1 6.1 50 58-112 264-321 (518)
172 3dzz_A Putative pyridoxal 5'-p 24.7 1.5E+02 0.0051 23.1 5.9 46 56-101 149-200 (391)
173 3b1s_B Flagellar biosynthetic 30.3 16 0.00054 25.0 0.0 35 72-111 20-54 (87)
174 2dwu_A Glutamate racemase; iso 24.3 96 0.0033 24.5 4.7 41 57-100 59-99 (276)
175 2pln_A HP1043, response regula 24.3 1.1E+02 0.0037 20.0 4.4 61 34-101 29-93 (137)
176 3rjt_A Lipolytic protein G-D-S 24.2 50 0.0017 23.4 2.7 47 55-101 118-175 (216)
177 3p9x_A Phosphoribosylglycinami 24.2 1.3E+02 0.0043 23.4 5.2 39 59-101 19-59 (211)
178 3dfz_A SIRC, precorrin-2 dehyd 24.1 34 0.0012 26.9 1.9 35 67-104 91-125 (223)
179 2vi8_A Serine hydroxymethyltra 24.0 68 0.0023 25.3 3.7 46 57-102 153-199 (405)
180 3gi1_A LBP, laminin-binding pr 23.9 1.2E+02 0.0041 24.2 5.2 51 50-101 179-235 (286)
181 4hb7_A Dihydropteroate synthas 23.9 2.4E+02 0.0081 22.9 7.0 83 12-100 45-131 (270)
182 2jfq_A Glutamate racemase; cel 23.9 47 0.0016 26.6 2.8 42 57-101 74-115 (286)
183 4f82_A Thioredoxin reductase; 23.9 91 0.0031 23.4 4.2 53 56-113 71-127 (176)
184 3u5r_E Uncharacterized protein 23.8 2.2E+02 0.0075 20.9 6.5 57 57-113 82-142 (218)
185 2jfz_A Glutamate racemase; cel 23.6 37 0.0013 26.6 2.0 38 60-100 55-92 (255)
186 2wfc_A Peroxiredoxin 5, PRDX5; 23.5 91 0.0031 22.3 4.1 48 61-113 60-111 (167)
187 1wvf_A 4-cresol dehydrogenase 23.5 1.3E+02 0.0044 26.0 5.7 78 20-101 2-87 (520)
188 2oqr_A Sensory transduction pr 23.4 1.3E+02 0.0046 21.6 5.1 66 35-103 16-84 (230)
189 1ax4_A Tryptophanase; tryptoph 23.4 1.3E+02 0.0043 24.5 5.4 36 66-101 182-224 (467)
190 1zud_1 Adenylyltransferase THI 23.3 96 0.0033 24.1 4.5 33 67-101 118-150 (251)
191 3kc2_A Uncharacterized protein 23.2 83 0.0028 26.0 4.2 46 51-97 29-74 (352)
192 3jy6_A Transcriptional regulat 23.2 2E+02 0.0069 21.3 6.2 60 37-102 24-93 (276)
193 3vqt_A RF-3, peptide chain rel 23.2 1.6E+02 0.0054 25.8 6.2 46 57-103 115-161 (548)
194 1y8q_A Ubiquitin-like 1 activa 23.1 65 0.0022 26.6 3.5 34 67-102 125-158 (346)
195 2zv3_A PTH, peptidyl-tRNA hydr 22.9 1.6E+02 0.0056 20.5 5.2 68 57-142 39-106 (115)
196 1q7s_A BIT1, protein CGI-147; 22.9 1.8E+02 0.0062 20.3 5.5 67 58-142 42-108 (117)
197 3kcq_A Phosphoribosylglycinami 22.7 1.2E+02 0.0041 23.6 4.8 49 59-111 25-79 (215)
198 2qvg_A Two component response 22.7 1.4E+02 0.0046 19.5 4.6 73 35-110 19-108 (143)
199 3qq5_A Small GTP-binding prote 22.6 1.1E+02 0.0038 26.0 5.0 49 57-107 105-153 (423)
200 3gbv_A Putative LACI-family tr 22.3 1.6E+02 0.0055 21.9 5.5 42 59-102 61-102 (304)
201 3t8y_A CHEB, chemotaxis respon 22.3 89 0.003 21.5 3.7 50 53-102 57-106 (164)
202 3ceu_A Thiamine phosphate pyro 22.2 70 0.0024 24.1 3.3 52 60-113 20-72 (210)
203 1gml_A T-complex protein 1 sub 22.2 1.9E+02 0.0064 21.5 5.7 52 57-113 68-122 (178)
204 2wji_A Ferrous iron transport 22.2 83 0.0029 21.7 3.6 42 67-109 81-123 (165)
205 3ruv_A Chaperonin, CPN; double 22.2 96 0.0033 27.3 4.6 51 58-113 271-324 (543)
206 1ass_A Thermosome; chaperonin, 22.2 1.6E+02 0.0056 21.4 5.3 52 57-113 62-116 (159)
207 3ko1_A Chaperonin; 9-fold symm 22.1 1E+02 0.0036 27.2 4.8 49 57-110 284-332 (553)
208 3piu_A 1-aminocyclopropane-1-c 22.0 1.5E+02 0.0052 23.9 5.6 35 67-101 191-231 (435)
209 3k4h_A Putative transcriptiona 22.0 2E+02 0.0068 21.4 5.9 59 38-101 31-99 (292)
210 3qvl_A Putative hydantoin race 21.9 78 0.0027 24.8 3.7 34 62-100 64-97 (245)
211 3iyg_Q T-complex protein 1 sub 21.9 1.6E+02 0.0055 25.6 6.0 46 62-112 266-314 (512)
212 3tb6_A Arabinose metabolism tr 21.8 1.7E+02 0.0059 21.7 5.5 45 58-102 62-107 (298)
213 2dyk_A GTP-binding protein; GT 21.7 92 0.0031 20.8 3.6 27 82-108 96-122 (161)
214 3lhk_A Putative DNA binding pr 21.5 73 0.0025 23.0 3.2 48 54-102 53-102 (154)
215 3gl9_A Response regulator; bet 21.5 1.5E+02 0.0053 19.0 4.7 64 35-101 14-83 (122)
216 3l6u_A ABC-type sugar transpor 21.4 2E+02 0.0067 21.4 5.8 41 58-101 55-96 (293)
217 3lte_A Response regulator; str 21.3 1.4E+02 0.0047 19.1 4.4 64 35-101 18-87 (132)
218 1o69_A Aminotransferase; struc 21.3 90 0.0031 25.0 4.0 45 57-101 110-156 (394)
219 1xvw_A Hypothetical protein RV 21.2 46 0.0016 22.9 2.0 43 66-113 69-114 (160)
220 1k66_A Phytochrome response re 21.2 1.4E+02 0.0047 19.5 4.4 64 35-101 18-99 (149)
221 1srv_A Protein (groel (HSP60 c 21.1 1.5E+02 0.0051 22.1 4.8 47 64-112 51-107 (145)
222 8abp_A L-arabinose-binding pro 21.1 1.8E+02 0.0063 21.8 5.6 39 60-101 50-89 (306)
223 1gd9_A Aspartate aminotransfer 20.9 1.6E+02 0.0056 23.0 5.4 44 57-101 151-200 (389)
224 3dxv_A Alpha-amino-epsilon-cap 20.8 2.1E+02 0.0071 23.0 6.2 45 57-101 188-242 (439)
225 1mb3_A Cell division response 20.8 1.6E+02 0.0055 18.5 4.6 66 35-103 13-84 (124)
226 2qzj_A Two-component response 20.8 84 0.0029 20.8 3.2 56 55-110 36-94 (136)
227 1k68_A Phytochrome response re 20.8 1.3E+02 0.0043 19.3 4.1 48 54-101 35-92 (140)
228 3hv2_A Response regulator/HD d 20.8 1E+02 0.0035 20.7 3.7 50 53-102 44-94 (153)
229 1mvo_A PHOP response regulator 20.8 1.6E+02 0.0055 18.9 4.6 64 35-101 15-82 (136)
230 1kyq_A Met8P, siroheme biosynt 20.5 91 0.0031 25.1 3.8 36 67-104 106-144 (274)
231 2yvt_A Hypothetical protein AQ 20.4 1.4E+02 0.0046 22.2 4.6 22 58-79 23-44 (260)
232 3kax_A Aminotransferase, class 20.3 1.6E+02 0.0054 22.9 5.2 45 56-101 146-196 (383)
233 3av0_A DNA double-strand break 20.3 1.3E+02 0.0046 24.6 4.9 47 58-105 51-106 (386)
234 3f7j_A YVGN protein; aldo-keto 20.3 1.3E+02 0.0044 23.7 4.6 66 35-101 119-190 (276)
235 1tjy_A Sugar transport protein 20.2 1.6E+02 0.0056 22.6 5.2 39 60-101 53-92 (316)
236 3dbi_A Sugar-binding transcrip 20.1 2.2E+02 0.0075 22.0 6.0 62 36-101 79-150 (338)
237 2f9s_A Thiol-disulfide oxidore 20.1 2E+02 0.0069 19.1 5.3 49 61-113 53-102 (151)
238 3hzh_A Chemotaxis response reg 20.0 1.6E+02 0.0054 19.9 4.6 65 35-102 48-119 (157)
No 1
>2xzm_U Ribosomal protein L7AE containing protein; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_U
Probab=99.97 E-value=2.4e-32 Score=205.85 Aligned_cols=111 Identities=31% Similarity=0.595 Sum_probs=106.8
Q ss_pred CCCCcccHHHHHHHHHHHHHhcCCceeeHHHHHHHHhcCCeeEEEEcCCCCchhhHHHHHHHHHhCCCCEEEeCCHHHHH
Q psy16564 28 NDEGVSDINKALQQVLKTARAHDGLAKGLHEAAKALDRREAQLCVLADNCDEPAYKKLVQALCSEHQIPLIKVDNNKKLG 107 (157)
Q Consensus 28 ~~~~~m~~~k~L~~lL~~A~~agklv~G~~~v~KaL~kgkakLVIlA~D~s~~~~~~~l~~lc~~~~Ipvi~v~sk~eLG 107 (157)
|++++|+++.+|+.+|++|+++|+++.|.++++++|++|+++|||||+|++|++++.+|+++|++++|||++++++.+||
T Consensus 1 ~~~~~~~i~~~l~~~L~~A~~~gkl~~G~~~v~Kai~~gka~LViiA~D~~p~~~~~~i~~lc~~~~Ip~~~v~sk~~LG 80 (126)
T 2xzm_U 1 MADQNQQLNEVLAKVIKSSNCQDAISKGLHEVLRTIEAKQALFVCVAEDCDQGNYVKLVKALCAKNEIKYVSVPKRASLG 80 (126)
T ss_dssp --CCTHHHHHHHHHHHTTTTSSSCEEESHHHHHHHHHHTCCSEEEEESSCCSTTHHHHHHHHHHHTTCCEEEESCSHHHH
T ss_pred CCcccccHHHHHHHHHHHHHHcCCEeecHHHHHHHHHcCCceEEEEeCCCChHHHHHHHHHHHHHhCCCEEEECCHHHHH
Confidence 58999999999999999999999999999999999999999999999999877899999999999999999999999999
Q ss_pred HHhCCCccccCCCccceeeeEEEEEecCchh
Q psy16564 108 EWAGLSKLDNMGKARKVVGCSCVVIKVRNWF 138 (157)
Q Consensus 108 ~a~G~~~~~~~gk~rki~~~s~vaI~D~g~~ 138 (157)
+|||+++++++|+||++++|||++|+|+|..
T Consensus 81 ~a~G~~k~d~~g~~rk~v~~s~vaI~d~g~~ 111 (126)
T 2xzm_U 81 EYLGHFTANAKGEIKKVKGCSSLAIRKYAPE 111 (126)
T ss_dssp HHHTCCCBCTTCCBSCCCCCCEEEESSCCTT
T ss_pred HHHCCCccccccCcCceeeEEEEEEEecCcc
Confidence 9999999999999999999999999999987
No 2
>3u5c_M 40S ribosomal protein S12, 40S ribosomal protein S11-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_M
Probab=99.97 E-value=2.1e-31 Score=204.93 Aligned_cols=111 Identities=50% Similarity=0.696 Sum_probs=107.2
Q ss_pred CcccHHHHHHHHHHHHHhcCCceeeHHHHHHHHhcCCeeEEEEcCCCCchhhHHHHHHHHH--hCCCCEEEeCCHHHHHH
Q psy16564 31 GVSDINKALQQVLKTARAHDGLAKGLHEAAKALDRREAQLCVLADNCDEPAYKKLVQALCS--EHQIPLIKVDNNKKLGE 108 (157)
Q Consensus 31 ~~m~~~k~L~~lL~~A~~agklv~G~~~v~KaL~kgkakLVIlA~D~s~~~~~~~l~~lc~--~~~Ipvi~v~sk~eLG~ 108 (157)
.+|+++++|+.+|++|+++|+++.|.++++|+|++|+++|||||+||+|+++.++|+.+|+ +++||+++++|+.+||+
T Consensus 20 ~~md~~~aL~~vLk~A~~~g~l~~G~~et~Kal~kg~a~LvvLA~D~~~~~i~k~i~~lC~~~e~~IP~i~V~s~keLG~ 99 (143)
T 3u5c_M 20 AEVTIEDALKVVLRTALVHDGLARGLRESTKALTRGEALLVVLVSSVTEANIIKLVEGLANDPENKVPLIKVADAKQLGE 99 (143)
T ss_dssp CCSCSSHHHHHHHHHHHHTTCEEESHHHHHHHHSSTTCSCEECCSCCSTTHHHHHHHHHHHCSSSCCCCCCCSCHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHHcCCEeEcHHHHHHHHhcCceeEEEEeCCCCHHHHHHHHHHHHhhhhhCCCEEEECCHHHHhH
Confidence 7899999999999999999999999999999999999999999999997799999999999 99999999999999999
Q ss_pred HhCCCccccCCCccceeeeEEEEEecCchhHHh
Q psy16564 109 WAGLSKLDNMGKARKVVGCSCVVIKVRNWFLII 141 (157)
Q Consensus 109 a~G~~~~~~~gk~rki~~~s~vaI~D~g~~~~~ 141 (157)
|||+++++++|+||++++|||++|+|+|+..-.
T Consensus 100 a~Gl~k~d~~Gk~rkVv~~s~v~I~d~G~~~~~ 132 (143)
T 3u5c_M 100 WAGLGKIDREGNARKVVGASVVVVKNWGAETDE 132 (143)
T ss_dssp HSSCCCCSSSSCCSCCCCCSCEEESCCCCCSHH
T ss_pred HhCcCccccCCCccccceeEEEEEcccchhhHH
Confidence 999999999999999999999999999996533
No 3
>2ale_A SNU13, NHP2/L7AE family protein YEL026W; splicing, RNA, yeast, His-TAG, RNA binding protein; 1.80A {Saccharomyces cerevisiae} SCOP: d.79.3.1 PDB: 1zwz_A 2ozb_A 3siu_A 3siv_A 1e7k_A
Probab=99.95 E-value=1.2e-27 Score=181.89 Aligned_cols=107 Identities=21% Similarity=0.328 Sum_probs=98.9
Q ss_pred ccCCCCCCCCCCcccHHHHHHHHHHHHHhcCCceeeHHHHHHHHhcCCeeEEEEcCCCCchhhHHHHHHHHHhCCCCEEE
Q psy16564 20 ATDNVPSANDEGVSDINKALQQVLKTARAHDGLAKGLHEAAKALDRREAQLCVLADNCDEPAYKKLVQALCSEHQIPLIK 99 (157)
Q Consensus 20 ~~~~~~~p~~~~~m~~~k~L~~lL~~A~~agklv~G~~~v~KaL~kgkakLVIlA~D~s~~~~~~~l~~lc~~~~Ipvi~ 99 (157)
+++|+++|+++.. +.+.+.++|++|+++|+++.|.++|+++|++|+++|||||.|++|.+++.+|+.+|++++||+++
T Consensus 3 ~~~~~a~p~a~~~--~~~ki~~~L~lA~k~gkl~~G~~~v~kai~~gkakLViiA~D~~p~~~~~~l~~lc~~~~VP~~~ 80 (134)
T 2ale_A 3 APNPKAFPLADAA--LTQQILDVVQQAANLRQLKKGANEATKTLNRGISEFIIMAADCEPIEILLHLPLLCEDKNVPYVF 80 (134)
T ss_dssp CCCTTCCSBCCHH--HHHHHHHHHHHHHHTTCEEESHHHHHHHHHHTCEEEEEEETTCSSGGGGTHHHHHHHHHTCCEEE
T ss_pred CCCccccCCCCHH--HHHHHHHHHHHHHHcCCcccCchHHHHHHHhCCCeEEEEeCCCCHHHHHHHHHHHHHhcCCCEEE
Confidence 5899999999876 77777799999999999999999999999999999999999999966999999999999999999
Q ss_pred eCCHHHHHHHhCCCccccCCCccceeeeEEEEEecCchhH
Q psy16564 100 VDNNKKLGEWAGLSKLDNMGKARKVVGCSCVVIKVRNWFL 139 (157)
Q Consensus 100 v~sk~eLG~a~G~~~~~~~gk~rki~~~s~vaI~D~g~~~ 139 (157)
++++.+||+|||+. ++|+|++|+|+|.++
T Consensus 81 v~sk~eLG~a~G~~-----------~~~s~vaI~d~~~s~ 109 (134)
T 2ale_A 81 VPSRVALGRACGVS-----------RPVIAASITTNDASA 109 (134)
T ss_dssp ESCHHHHHHHTTCS-----------SCCSEEEEECCTTCT
T ss_pred ECCHHHHHHHhCCC-----------CCeEEEEEEcCChHH
Confidence 99999999999975 457899999997655
No 4
>3o85_A Ribosomal protein L7AE; alpha beta sandwich fold, K-turn RNA binding protein, KINK T ribosomal protein; 1.81A {Giardia lamblia}
Probab=99.95 E-value=2.3e-27 Score=177.48 Aligned_cols=106 Identities=18% Similarity=0.288 Sum_probs=97.7
Q ss_pred ccCCCCCCCCCCcccHHHHHHHHHHHHHhcCCceeeHHHHHHHHhcCCeeEEEEcCCCCchhhHHHHHHHHHhCCCCEEE
Q psy16564 20 ATDNVPSANDEGVSDINKALQQVLKTARAHDGLAKGLHEAAKALDRREAQLCVLADNCDEPAYKKLVQALCSEHQIPLIK 99 (157)
Q Consensus 20 ~~~~~~~p~~~~~m~~~k~L~~lL~~A~~agklv~G~~~v~KaL~kgkakLVIlA~D~s~~~~~~~l~~lc~~~~Ipvi~ 99 (157)
+++|+++|+++.. +.+.+.++|++|+++|+++.|.++|+++|++|+++|||+|+|++|..+..+|+.+|++++||+++
T Consensus 2 ~~~~~a~p~a~~~--l~~kil~~L~lA~kagklv~G~~~v~kai~~gka~lViiA~D~~p~~~~~~l~~lc~~~~VP~~~ 79 (122)
T 3o85_A 2 QIDPRAIPFANEE--LSLELLNLVKHGASLQAIKRGANEALKQVNRGKAELVIIAADADPIEIVLHLPLACEDKGVPYVF 79 (122)
T ss_dssp -CCTTSCSBCCHH--HHHHHHHHHHHHHHTTCEEESHHHHHHHHHTTCCSEEEEETTCSSGGGGTTHHHHHHTTTCCEEE
T ss_pred CCCCccCCCCCHH--HHHHHHHHHHHHHHhCCEeEcHHHHHHHHHcCCceEEEEeCCCChHHHHHHHHHHHHHhCCCEEE
Confidence 5799999999988 66677799999999999999999999999999999999999999955789999999999999999
Q ss_pred eCCHHHHHHHhCCCccccCCCccceeeeEEEEEecCchh
Q psy16564 100 VDNNKKLGEWAGLSKLDNMGKARKVVGCSCVVIKVRNWF 138 (157)
Q Consensus 100 v~sk~eLG~a~G~~~~~~~gk~rki~~~s~vaI~D~g~~ 138 (157)
++|+.+||+|||+. +++++++|+|+|..
T Consensus 80 v~sk~eLG~a~Gk~-----------~~vs~vaI~d~~~~ 107 (122)
T 3o85_A 80 IGSKNALGRACNVS-----------VPTIVASIGKHDAL 107 (122)
T ss_dssp ESCHHHHHHHTTCS-----------SCCSEEEECCCTTT
T ss_pred ECCHHHHHHHhCCC-----------CCEEEEEEEcccch
Confidence 99999999999986 56799999999863
No 5
>3iz5_f 60S ribosomal protein L30 (L30E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_f
Probab=99.95 E-value=9.8e-28 Score=177.35 Aligned_cols=102 Identities=22% Similarity=0.222 Sum_probs=95.4
Q ss_pred cHHHHHHHHHHHHHhcCCceeeHHHHHHHHhcCCeeEEEEcCCCCchhhHHHHHHHHHhCCCCEEEe-CCHHHHHHHhCC
Q psy16564 34 DINKALQQVLKTARAHDGLAKGLHEAAKALDRREAQLCVLADNCDEPAYKKLVQALCSEHQIPLIKV-DNNKKLGEWAGL 112 (157)
Q Consensus 34 ~~~k~L~~lL~~A~~agklv~G~~~v~KaL~kgkakLVIlA~D~s~~~~~~~l~~lc~~~~Ipvi~v-~sk~eLG~a~G~ 112 (157)
+.++.+ ++|++|+++|+++.|.++|+++|++|+++|||||+||+| +++++|+.+|++++||++++ +|+.+||+|||+
T Consensus 10 ~~~~i~-~~L~la~kagk~~~G~~~t~kai~~gkakLVilA~D~~~-~~~~~i~~~c~~~~ipv~~~~~s~~eLG~A~Gk 87 (112)
T 3iz5_f 10 SGENIN-NKLQLVMKSGKYTLGYKTVLKTLRSSLGKLIILANNCPP-LRKSEIETYAMLAKISVHHFHGNNVDLGTACGK 87 (112)
T ss_dssp GGGHHH-HHHHHHHTTCEEEESHHHHHHHHHTTCCSEEEECSCCCH-HHHHHHHHHHHHTTCCEECCCCTTCTHHHHHCT
T ss_pred cHHHHH-HHHHHHHHhCCeeECHHHHHHHHHcCCceEEEEeCCCCH-HHHHHHHHHHHHcCCcEEEeCCCHHHHHHHhCC
Confidence 456666 999999999999999999999999999999999999999 89999999999999999999 899999999998
Q ss_pred CccccCCCccceeeeEEEEEecCchhHHhhhccccc
Q psy16564 113 SKLDNMGKARKVVGCSCVVIKVRNWFLIICSRKSTQ 148 (157)
Q Consensus 113 ~~~~~~gk~rki~~~s~vaI~D~g~~~~~~~~~~~~ 148 (157)
. ++|++++|+|+||++++.+..+.|
T Consensus 88 ~-----------~~v~~vaI~D~G~a~~l~~~~~~~ 112 (112)
T 3iz5_f 88 Y-----------YRVCCLSILDPGDSDIISTTTTTQ 112 (112)
T ss_dssp T-----------CSSCEEEEECCSCCSHHHHTTSCC
T ss_pred c-----------cceEEEEEeccchHHHHHhccccC
Confidence 6 568999999999999999887654
No 6
>2aif_A Ribosomal protein L7A; high-mobility like protein, transcription factor, structural genomics, structural genomics consortium, SGC; 1.90A {Cryptosporidium parvum} SCOP: d.79.3.1
Probab=99.94 E-value=1.3e-26 Score=175.85 Aligned_cols=114 Identities=20% Similarity=0.259 Sum_probs=95.3
Q ss_pred eccccCCCCCCCCCCcccHHHHHHHHHHHHHhcCCceeeHHHHHHHHhcCCeeEEEEcCCCCchhhHHHHHHHHHhCCCC
Q psy16564 17 QGTATDNVPSANDEGVSDINKALQQVLKTARAHDGLAKGLHEAAKALDRREAQLCVLADNCDEPAYKKLVQALCSEHQIP 96 (157)
Q Consensus 17 ~~~~~~~~~~p~~~~~m~~~k~L~~lL~~A~~agklv~G~~~v~KaL~kgkakLVIlA~D~s~~~~~~~l~~lc~~~~Ip 96 (157)
.+++++|+++|+++.. +.+.+.++|++|+++|+++.|.++|+++|++|+++|||+|+|++|..+.++|+.+|++++||
T Consensus 9 ~~~~~~~~a~p~~~~~--l~~ki~~~L~lA~kagklv~G~~~v~kal~~gkaklViiA~D~~~~~~~~~l~~lc~~~~IP 86 (135)
T 2aif_A 9 EDTGFNPKAFPLASPD--LNNKIINLVQQACNYKQLRKGANEATKALNRGIAEIVLLAADAEPLEILLHLPLVCEDKNTP 86 (135)
T ss_dssp ---------CCBCCSH--HHHHHHHHHHHHHHTTCEEESHHHHHHHHHTTCEEEEEEETTCSCHHHHHHHHHHHHHTTCC
T ss_pred cccCCCccccccccHH--HHHHHHHHHHHHHHcCCcccCHHHHHHHHHcCCCeEEEEecCCChHHHHhHHHHHHHhcCCc
Confidence 3455789999998866 77777799999999999999999999999999999999999999955669999999999999
Q ss_pred EEEeCCHHHHHHHhCCCccccCCCccceeeeEEEEEecCchhHHhhh
Q psy16564 97 LIKVDNNKKLGEWAGLSKLDNMGKARKVVGCSCVVIKVRNWFLIICS 143 (157)
Q Consensus 97 vi~v~sk~eLG~a~G~~~~~~~gk~rki~~~s~vaI~D~g~~~~~~~ 143 (157)
+++++++.+||+|||+. +++++++|+|+|.+++...
T Consensus 87 ~~~v~sk~eLG~a~G~~-----------~~v~~vaI~d~~~s~i~~~ 122 (135)
T 2aif_A 87 YVFVRSKVALGRACGVS-----------RPVIAAAITSKDGSSLSSQ 122 (135)
T ss_dssp EEEESCHHHHHHHTTCS-----------SCCSEEEEECCTTCTTHHH
T ss_pred EEEECCHHHHHHHhCCC-----------CcEEEEEEEcCCcHHHHHH
Confidence 99999999999999976 3567899999998876554
No 7
>2jnb_A NHP2-like protein 1; splicing, KINK-turn RNA-binding protein, NHPX, RNA binding protein; NMR {Homo sapiens} SCOP: d.79.3.1
Probab=99.94 E-value=1.2e-27 Score=183.95 Aligned_cols=114 Identities=18% Similarity=0.276 Sum_probs=103.0
Q ss_pred eccccCCCCCCCCCCcccHHHHHHHHHHHHHhcCCceeeHHHHHHHHhcCCeeEEEEcCCCCchhhHHHHHHHHHhCCCC
Q psy16564 17 QGTATDNVPSANDEGVSDINKALQQVLKTARAHDGLAKGLHEAAKALDRREAQLCVLADNCDEPAYKKLVQALCSEHQIP 96 (157)
Q Consensus 17 ~~~~~~~~~~p~~~~~m~~~k~L~~lL~~A~~agklv~G~~~v~KaL~kgkakLVIlA~D~s~~~~~~~l~~lc~~~~Ip 96 (157)
.+.+++|+++|+++.. +++.+.++|++|+++|+++.|.++|+++|++|+++|||||+|++|.+++.+|+.+|++++||
T Consensus 18 ~~~~~~~~a~Pla~~~--l~~ki~~~L~lA~kagkl~~G~kev~KaI~~gkakLVIIA~D~~p~e~~~~l~~lC~~~~VP 95 (144)
T 2jnb_A 18 TEADVNPKAYPLADAH--LTKKLLDLVQQSCNYKQLRKGANEATKTLNRGISEFIVMAADAEPLEIILHLPLLCEDKNVP 95 (144)
T ss_dssp CCSCCCCCSSSBCCHH--HHHHHHHHHHHHHHTTCCCBCHHHHHHHHHHTCEEEEEEETTCSCHHHHTTSCSSCGGGCCC
T ss_pred ccccCCcccCCCCCHH--HHHHHHHHHHHHHHcCCccccHHHHHHHHHhCCCeEEEEeCCCCHHHHHHHHHHHHHHhCCC
Confidence 4567999999999866 77777799999999999999999999999999999999999999955999999999999999
Q ss_pred EEEeCCHHHHHHHhCCCccccCCCccceeeeEEEEEecCchhHHhhh
Q psy16564 97 LIKVDNNKKLGEWAGLSKLDNMGKARKVVGCSCVVIKVRNWFLIICS 143 (157)
Q Consensus 97 vi~v~sk~eLG~a~G~~~~~~~gk~rki~~~s~vaI~D~g~~~~~~~ 143 (157)
+++++++.+||+|||+. +++++++|+|+|.+++...
T Consensus 96 ~~~v~sk~eLG~a~Gk~-----------~~vs~vaI~~~~~s~i~~~ 131 (144)
T 2jnb_A 96 YVFVRSKQALGRACGVS-----------RPVIACSVTIKEGSQLKQQ 131 (144)
T ss_dssp CEEESCSHHHHHHHTCS-----------SCCSEEEEECCTTCTTHHH
T ss_pred EEEECCHHHHHHHhCCC-----------CceEEEEEEeCCcHHHHHH
Confidence 99999999999999986 4568899999987765543
No 8
>4a18_G RPL30; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_G 4a1b_G 4a1d_G 4adx_6
Probab=99.94 E-value=2.2e-27 Score=172.53 Aligned_cols=97 Identities=22% Similarity=0.221 Sum_probs=89.0
Q ss_pred HHHHHHHHHHHHHhcCCceeeHHHHHHHHhcCCeeEEEEcCCCCchhhHHHHHHHHHhCCCCEE-EeCCHHHHHHHhCCC
Q psy16564 35 INKALQQVLKTARAHDGLAKGLHEAAKALDRREAQLCVLADNCDEPAYKKLVQALCSEHQIPLI-KVDNNKKLGEWAGLS 113 (157)
Q Consensus 35 ~~k~L~~lL~~A~~agklv~G~~~v~KaL~kgkakLVIlA~D~s~~~~~~~l~~lc~~~~Ipvi-~v~sk~eLG~a~G~~ 113 (157)
.++.+ ++|++|+++|+++.|.++|+++|++|+++|||+|+|++| ++..+++.+|++++||++ +++|+.+||+|||+.
T Consensus 7 ~~~i~-~~L~la~kagklv~G~~~v~kai~~gkaklViiA~D~~~-~~~~~i~~~c~~~~ip~~~~~~s~~eLG~a~Gk~ 84 (104)
T 4a18_G 7 QDNIQ-SKLALVMRSGKATLGYKSTIKAIRNGTAKLVFISNNCPT-VRKSEIEYYASLAQISIHHFVGSNVELGTACGKY 84 (104)
T ss_dssp -CHHH-HHHHHHHHHSEEEESHHHHHHHHHHTCCCEEEECTTSCH-HHHHHHHHHHHHHTCEEEECSSCHHHHHHHTTCS
T ss_pred HHHHH-HHHHHHHHhCCEeECHHHHHHHHHcCCceEEEEeCCCCH-HHHHHHHHHHHHcCCcEEEecCCHHHHHHHhCCc
Confidence 34555 999999999999999999999999999999999999999 799999999999999999 589999999999986
Q ss_pred ccccCCCccceeeeEEEEEecCchhHHhhhc
Q psy16564 114 KLDNMGKARKVVGCSCVVIKVRNWFLIICSR 144 (157)
Q Consensus 114 ~~~~~gk~rki~~~s~vaI~D~g~~~~~~~~ 144 (157)
++|+|++|+|+||++++.|+
T Consensus 85 -----------~~~~~vaI~D~G~a~~l~~~ 104 (104)
T 4a18_G 85 -----------HRCSTMAILDAGDSDILKTE 104 (104)
T ss_dssp -----------SCCSEEEEEECSSCGGGCC-
T ss_pred -----------cCEEEEEEeccchHHHhhcC
Confidence 56889999999999998764
No 9
>3on1_A BH2414 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, unknown function; HET: MSE; 1.65A {Bacillus halodurans}
Probab=99.94 E-value=1.1e-26 Score=167.75 Aligned_cols=98 Identities=22% Similarity=0.245 Sum_probs=88.4
Q ss_pred ccHHHHHHHHHHHHHhcCCceeeHHHHHHHHhcCCeeEEEEcCCCCchhhHHHHHHHHHhCCCCEEEeCCHHHHHHHhCC
Q psy16564 33 SDINKALQQVLKTARAHDGLAKGLHEAAKALDRREAQLCVLADNCDEPAYKKLVQALCSEHQIPLIKVDNNKKLGEWAGL 112 (157)
Q Consensus 33 m~~~k~L~~lL~~A~~agklv~G~~~v~KaL~kgkakLVIlA~D~s~~~~~~~l~~lc~~~~Ipvi~v~sk~eLG~a~G~ 112 (157)
|+-++.+ ++|++|+++|+++.|.++|+++|++|+++|||+|+|++| ++.++|+.+|++++||+++++|+.+||+|||+
T Consensus 1 m~~~ki~-~~L~la~kagk~v~G~~~v~kai~~gka~lViiA~D~~~-~~~~~i~~~c~~~~ip~~~~~s~~eLG~a~Gk 78 (101)
T 3on1_A 1 MSEAKWL-SLLGLAARARQLLTGEEQVVKAVQNGQVTLVILSSDAGI-HTKKKLLDKCGSYQIPVKVVGNRQMLGRAIGK 78 (101)
T ss_dssp --CCHHH-HHHHHHHHTTCEEESHHHHHHHHHTTCCSEEEEETTSCH-HHHHHHHHHHHHHTCCEEEESCHHHHHHHTTS
T ss_pred CCHHHHH-HHHHHHHHHCCEeECHHHHHHHHHcCCCcEEEEeCCCCH-HHHHHHHHHHHHcCCCEEEeCCHHHHHHHhCC
Confidence 4445666 999999999999999999999999999999999999999 79999999999999999999999999999997
Q ss_pred CccccCCCccceeeeEEEEEecCchhHHhhhc
Q psy16564 113 SKLDNMGKARKVVGCSCVVIKVRNWFLIICSR 144 (157)
Q Consensus 113 ~~~~~~gk~rki~~~s~vaI~D~g~~~~~~~~ 144 (157)
. .+++++|+|+||++.+.+.
T Consensus 79 ~------------~~~~vai~d~g~a~~i~~~ 98 (101)
T 3on1_A 79 H------------ERVVIGVKDAGFSRKLAAL 98 (101)
T ss_dssp S------------CCSEEEECCHHHHHHHHHH
T ss_pred c------------CeEEEEEECccHHHHHHHH
Confidence 5 2357999999999988753
No 10
>3u5e_c L32, RP73, YL38, 60S ribosomal protein L30; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3izc_f 3izs_f 3o58_Z 3o5h_Z 1t0k_B 3u5i_c 4b6a_c 1ck2_A 1cn7_A 1nmu_B* 3jyw_2
Probab=99.94 E-value=5.4e-27 Score=170.89 Aligned_cols=97 Identities=16% Similarity=0.097 Sum_probs=88.8
Q ss_pred HHHHHHHHHHHHHhcCCceeeHHHHHHHHhcCCeeEEEEcCCCCchhhHHHHHHHHHhCCCCEE-EeCCHHHHHHHhCCC
Q psy16564 35 INKALQQVLKTARAHDGLAKGLHEAAKALDRREAQLCVLADNCDEPAYKKLVQALCSEHQIPLI-KVDNNKKLGEWAGLS 113 (157)
Q Consensus 35 ~~k~L~~lL~~A~~agklv~G~~~v~KaL~kgkakLVIlA~D~s~~~~~~~l~~lc~~~~Ipvi-~v~sk~eLG~a~G~~ 113 (157)
.++.+ ++|++|+++|+++.|.++|+++|++|+++|||+|+|++| +++++|+.+|++++||++ +++|+.+||+|||+.
T Consensus 7 ~~~i~-~~L~la~kagk~v~G~~~v~kai~~gkaklVilA~D~~~-~~~~~i~~~c~~~~ip~~~~~~s~~eLG~A~Gk~ 84 (105)
T 3u5e_c 7 QESIN-QKLALVIKSGKYTLGYKSTVKSLRQGKSKLIIIAANTPV-LRKSELEYYAMLSKTKVYYFQGGNNELGTAVGKL 84 (105)
T ss_dssp --CHH-HHHHHHHTTSEEEESHHHHHHHHHTTCCSEEEECTTSCH-HHHHHHHHHHHHHTCEEEECSSCHHHHHHHTTCS
T ss_pred HHHHH-HHHHHHHHhCCeeECHHHHHHHHHcCCceEEEEeCCCCH-HHHHHHHHHHHHcCCCEEEeCCCHHHHHHHhCCc
Confidence 34455 999999999999999999999999999999999999998 899999999999999999 578999999999986
Q ss_pred ccccCCCccceeeeEEEEEecCchhHHhhhc
Q psy16564 114 KLDNMGKARKVVGCSCVVIKVRNWFLIICSR 144 (157)
Q Consensus 114 ~~~~~gk~rki~~~s~vaI~D~g~~~~~~~~ 144 (157)
+++++++|+|+||++++.+.
T Consensus 85 -----------~~~~~vaI~D~G~a~~l~~~ 104 (105)
T 3u5e_c 85 -----------FRVGVVSILEAGDSDILTTL 104 (105)
T ss_dssp -----------SCCSEEEEEECCSCCTTTTT
T ss_pred -----------ccEEEEEEeccchHHHHHhc
Confidence 46789999999999998764
No 11
>2lbw_A H/ACA ribonucleoprotein complex subunit 2; L7AE, snoRNP, scaRNP, RNA binding protein; NMR {Saccharomyces cerevisiae} PDB: 2lbx_A
Probab=99.93 E-value=2.2e-26 Score=171.55 Aligned_cols=105 Identities=23% Similarity=0.301 Sum_probs=94.8
Q ss_pred HHHHHHHHHHHHHhcCCceeeHHHHHHHHhcCCeeEEEEcCCCCchhhHHHHHHHHHhCCCCEEEeCCHHHHHHHhCCCc
Q psy16564 35 INKALQQVLKTARAHDGLAKGLHEAAKALDRREAQLCVLADNCDEPAYKKLVQALCSEHQIPLIKVDNNKKLGEWAGLSK 114 (157)
Q Consensus 35 ~~k~L~~lL~~A~~agklv~G~~~v~KaL~kgkakLVIlA~D~s~~~~~~~l~~lc~~~~Ipvi~v~sk~eLG~a~G~~~ 114 (157)
+.+.+.++|++|+++|+++.|.++|+++|++|+++|||||+|++|..+..+|+.+|++++||+++++++.+||+|||+.
T Consensus 4 l~~ki~~~L~~a~k~gkl~~G~~~v~kai~~gkakLViiA~D~~~~~~~~~l~~lc~~~~VP~~~v~sk~eLG~a~g~k- 82 (121)
T 2lbw_A 4 LNKKVLKTVKKASKAKNVKRGVKEVVKALRKGEKGLVVIAGDIWPADVISHIPVLCEDHSVPYIFIPSKQDLGAAGATK- 82 (121)
T ss_dssp HHHHHHHHHHHHHTTTCEEESHHHHHHHHHHSCCCEEEECTTCSCTTHHHHHHHHHHHTCCCEEECCCHHHHHHHHTCS-
T ss_pred HHHHHHHHHHHHHHcCCccccHHHHHHHHHcCCceEEEEeCCCCHHHHHHHHHHHHHhcCCcEEEECCHHHHHHHhCCC-
Confidence 5566679999999999999999999999999999999999999996689999999999999999999999999999965
Q ss_pred cccCCCccceeeeEEEEEecCchhHHhhhccccceeeeccc
Q psy16564 115 LDNMGKARKVVGCSCVVIKVRNWFLIICSRKSTQVLSVNYN 155 (157)
Q Consensus 115 ~~~~gk~rki~~~s~vaI~D~g~~~~~~~~~~~~~~~~~~~ 155 (157)
.+++|++|+|+||+..+ .+.+..||+
T Consensus 83 ----------~~~s~v~I~d~g~a~~~-----~~~~~~~y~ 108 (121)
T 2lbw_A 83 ----------RPTSVVFIVPGSNKKKD-----GKNKEEEYK 108 (121)
T ss_dssp ----------SCCSEEEECCSCTTGGG-----CSSTHHHHH
T ss_pred ----------CCEEEEEEEcCcchHHH-----HHHHHHHHH
Confidence 35789999999999977 345566776
No 12
>3j21_Z 50S ribosomal protein L30E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=99.93 E-value=1.9e-26 Score=166.04 Aligned_cols=91 Identities=18% Similarity=0.182 Sum_probs=84.8
Q ss_pred HHHHHHHhcCCceeeHHHHHHHHhcCCeeEEEEcCCCCchhhHHHHHHHHHhCCCCEEEe-CCHHHHHHHhCCCccccCC
Q psy16564 41 QVLKTARAHDGLAKGLHEAAKALDRREAQLCVLADNCDEPAYKKLVQALCSEHQIPLIKV-DNNKKLGEWAGLSKLDNMG 119 (157)
Q Consensus 41 ~lL~~A~~agklv~G~~~v~KaL~kgkakLVIlA~D~s~~~~~~~l~~lc~~~~Ipvi~v-~sk~eLG~a~G~~~~~~~g 119 (157)
+.|++|+++|+++.|.++|+++|++|+++|||+|+|+++ +++++|+.+|++++||++.+ +|+.+||+|||+.
T Consensus 5 ~~L~la~kagk~v~G~~~v~kai~~gka~lViiA~D~~~-~~~~~i~~~c~~~~ip~~~~~~s~~eLG~a~Gk~------ 77 (99)
T 3j21_Z 5 FELRKAMETGKVVLGSNETIRLAKTGGAKLIIVAKNAPK-EIKDDIYYYAKLSDIPVYEFEGTSVELGTLLGKP------ 77 (99)
T ss_dssp HHHHHHHHSSCEEESHHHHHHHHHHTCCSEEEEECCCCH-HHHHHHHHHHHHTTCCEEEECCCSCGGGGTTCST------
T ss_pred HHHHHHHHhCCEeECHHHHHHHHHcCCccEEEEeCCCCH-HHHHHHHHHHHHcCCCEEEeCCCHHHHHHHHCCC------
Confidence 566999999999999999999999999999999999988 89999999999999998877 8999999999986
Q ss_pred CccceeeeEEEEEecCchhHHhhh
Q psy16564 120 KARKVVGCSCVVIKVRNWFLIICS 143 (157)
Q Consensus 120 k~rki~~~s~vaI~D~g~~~~~~~ 143 (157)
++|++++|+|+||++++..
T Consensus 78 -----~~~~~vaI~d~g~a~~l~~ 96 (99)
T 3j21_Z 78 -----FVVASLAIVDPGESKILAI 96 (99)
T ss_dssp -----TCSEEEEESSCSSCSHHHH
T ss_pred -----CCEEEEEEEccchHHHHHh
Confidence 5689999999999998864
No 13
>3v7q_A Probable ribosomal protein YLXQ; L7AE superfamily, K-turn binding, K-turn RNA, hypothetical R protein, RNA binding protein; HET: CIT; 1.55A {Bacillus subtilis}
Probab=99.93 E-value=3.3e-26 Score=165.58 Aligned_cols=93 Identities=20% Similarity=0.255 Sum_probs=86.1
Q ss_pred HHHHHHHHHHhcCCceeeHHHHHHHHhcCCeeEEEEcCCCCchhhHHHHHHHHHhCCCCEEEeCCHHHHHHHhCCCcccc
Q psy16564 38 ALQQVLKTARAHDGLAKGLHEAAKALDRREAQLCVLADNCDEPAYKKLVQALCSEHQIPLIKVDNNKKLGEWAGLSKLDN 117 (157)
Q Consensus 38 ~L~~lL~~A~~agklv~G~~~v~KaL~kgkakLVIlA~D~s~~~~~~~l~~lc~~~~Ipvi~v~sk~eLG~a~G~~~~~~ 117 (157)
.+.++|++|+++|+++.|.++|+++|++|+++|||+|+|++| +.+++|+.+|++++||+++++|+.|||+|||+.
T Consensus 6 ki~~~L~la~kagk~v~G~~~v~kai~~gka~lViiA~D~~~-~~~~~i~~~c~~~~vp~~~~~s~~eLG~A~Gk~---- 80 (101)
T 3v7q_A 6 EWFPLLGLANRARKVVSGEDLVIKEIRNARAKLVLLTEDASS-NTAKKVTDKCNYYKVPYKKVESRAVLGRSIGKE---- 80 (101)
T ss_dssp THHHHHHHHHHTTCEEESHHHHHHHHHTTCCSEEEEETTSCH-HHHHHHHHHHHHTTCCEEEESCHHHHHHHTTSS----
T ss_pred hhHHHhhhhhhhhhcccchhhhHHHHhcCceeEEEEeccccc-cchhhhcccccccCCCeeeechHHHHHhhhCcc----
Confidence 344999999999999999999999999999999999999999 799999999999999999999999999999985
Q ss_pred CCCccceeeeEEEEEecCchhHHhhh
Q psy16564 118 MGKARKVVGCSCVVIKVRNWFLIICS 143 (157)
Q Consensus 118 ~gk~rki~~~s~vaI~D~g~~~~~~~ 143 (157)
+ +++++|+|+||++.+.+
T Consensus 81 ---~-----~~~~ai~D~g~a~~i~~ 98 (101)
T 3v7q_A 81 ---A-----RVVVAVTDQGFANKLIS 98 (101)
T ss_dssp ---C-----CSEEEECCHHHHHHHHH
T ss_pred ---c-----eEEEEEeccHHHHHHHH
Confidence 1 35699999999998765
No 14
>1vq8_F 50S ribosomal protein L7AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.79.3.1 PDB: 1vq4_F* 1vq5_F* 1vq6_F* 1vq7_F* 1s72_F* 1vq9_F* 1vqk_F* 1vql_F* 1vqm_F* 1vqn_F* 1vqo_F* 1vqp_F* 1yhq_F* 1yi2_F* 1yij_F* 1yit_F* 1yj9_F* 1yjn_F* 1yjw_F* 2otj_F* ...
Probab=99.93 E-value=1.3e-25 Score=166.76 Aligned_cols=109 Identities=23% Similarity=0.324 Sum_probs=96.6
Q ss_pred CCCCCCCCCcccHHHHHHHHHHHHHhcCCceeeHHHHHHHHhcCCeeEEEEcCCCCchhhHHHHHHHHHhCCCCEEEeCC
Q psy16564 23 NVPSANDEGVSDINKALQQVLKTARAHDGLAKGLHEAAKALDRREAQLCVLADNCDEPAYKKLVQALCSEHQIPLIKVDN 102 (157)
Q Consensus 23 ~~~~p~~~~~m~~~k~L~~lL~~A~~agklv~G~~~v~KaL~kgkakLVIlA~D~s~~~~~~~l~~lc~~~~Ipvi~v~s 102 (157)
|+|-+. +.++++++.+.++|++|+++|+++.|.++|+++|++|+++|||+|+|++|..+..+|+.+|++++||+++++|
T Consensus 2 ~~~v~~-~~p~~l~~~i~~~L~~A~kag~l~~G~~~v~kal~~gka~lViiA~D~~~~~~~~~l~~lc~~~~Vp~~~~~s 80 (120)
T 1vq8_F 2 PVYVDF-DVPADLEDDALEALEVARDTGAVKKGTNETTKSIERGSAELVFVAEDVQPEEIVMHIPELADEKGVPFIFVEQ 80 (120)
T ss_dssp CCSCCS-CCCHHHHHHHHHHHHHHHHSSCEEESHHHHHHHHHHTCCSEEEEESCCSSGGGTTTHHHHHHTTCCCEEEESC
T ss_pred CccccC-CCCHHHHHHHHHHHHHHHHcCCEeECHHHHHHHHHcCCceEEEEeCCCChHHHHHHHHHHHHhcCCCEEEECC
Confidence 334443 3346788888899999999999999999999999999999999999999966799999999999999999999
Q ss_pred HHHHHHHhCCCccccCCCccceeeeEEEEEecCchhHHhhh
Q psy16564 103 NKKLGEWAGLSKLDNMGKARKVVGCSCVVIKVRNWFLIICS 143 (157)
Q Consensus 103 k~eLG~a~G~~~~~~~gk~rki~~~s~vaI~D~g~~~~~~~ 143 (157)
+.+||+|||+. ++|++++|+|+|+++.+..
T Consensus 81 k~eLG~a~G~~-----------~~~~~vaI~d~g~a~~~~~ 110 (120)
T 1vq8_F 81 QDDLGHAAGLE-----------VGSAAAAVTDAGEADADVE 110 (120)
T ss_dssp HHHHHHHTTCS-----------SCCSEEEESSCSSCHHHHH
T ss_pred HHHHHHHhCCC-----------CCeEEEEEecCchHHHHHH
Confidence 99999999976 5789999999999986554
No 15
>2fc3_A 50S ribosomal protein L7AE; alpha-beta-alpha sandwich, ribosome, RNA binding protein; 1.56A {Aeropyrum pernix} SCOP: d.79.3.1 PDB: 3pla_C* 3id5_C* 3hax_D* 2hvy_D* 3hay_D* 3nvi_B 3nmu_C 3nvk_E* 3lwr_C 3lwo_C* 3lwq_C* 3lwp_C 3lwv_C 3hjw_C* 2czw_A 1pxw_A
Probab=99.93 E-value=2e-25 Score=166.73 Aligned_cols=103 Identities=30% Similarity=0.442 Sum_probs=94.4
Q ss_pred CcccHHHHHHHHHHHHHhcCCceeeHHHHHHHHhcCCeeEEEEcCCCCchhhHHHHHHHHHhCCCCEEEeCCHHHHHHHh
Q psy16564 31 GVSDINKALQQVLKTARAHDGLAKGLHEAAKALDRREAQLCVLADNCDEPAYKKLVQALCSEHQIPLIKVDNNKKLGEWA 110 (157)
Q Consensus 31 ~~m~~~k~L~~lL~~A~~agklv~G~~~v~KaL~kgkakLVIlA~D~s~~~~~~~l~~lc~~~~Ipvi~v~sk~eLG~a~ 110 (157)
-++++++.+.++|++|+++|+++.|.++|+++|++|+++|||+|+|++|..+..+|+.+|++++||+++++|+.+||+||
T Consensus 8 ~p~~l~~~i~~~L~lA~kagkl~~G~~~v~kal~~gka~lViiA~D~~~~~~~~~l~~lc~~~~Vp~~~v~sk~eLG~a~ 87 (124)
T 2fc3_A 8 VPEDLAEKAYEAVKRARETGRIKKGTNETTKAVERGLAKLVVIAEDVDPPEIVMHLPLLCDEKKIPYVYVPSKKRLGEAA 87 (124)
T ss_dssp CCHHHHHHHHHHHHHHHHHSEEEESHHHHHHHHHTTCCSEEEEETTCSSGGGTTTHHHHHHHTTCCEEEESCHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHHhCCccCCHHHHHHHHHcCCceEEEEcCCCChHHHHHHHHHHHHHcCCCEEEECCHHHHHHHh
Confidence 34678888889999999999999999999999999999999999999996679999999999999999999999999999
Q ss_pred CCCccccCCCccceeeeEEEEEecCchhHHhhhc
Q psy16564 111 GLSKLDNMGKARKVVGCSCVVIKVRNWFLIICSR 144 (157)
Q Consensus 111 G~~~~~~~gk~rki~~~s~vaI~D~g~~~~~~~~ 144 (157)
|+. ++|++++|+|+|+++.+...
T Consensus 88 G~~-----------~~~~~vaI~d~g~a~~~~~~ 110 (124)
T 2fc3_A 88 GIE-----------VAAASVAIIEPGDAETLVRE 110 (124)
T ss_dssp TCS-----------SCCSEEEEEECGGGHHHHHH
T ss_pred CCC-----------CCEEEEEEECcchHHHHHHH
Confidence 976 57899999999999866543
No 16
>1rlg_A 50S ribosomal protein L7AE; protein-RNA, structural protein/RNA complex; HET: 5BU; 2.70A {Archaeoglobus fulgidus} SCOP: d.79.3.1
Probab=99.93 E-value=1.8e-25 Score=165.84 Aligned_cols=102 Identities=25% Similarity=0.410 Sum_probs=94.1
Q ss_pred CcccHHHHHHHHHHHHHhcCCceeeHHHHHHHHhcCCeeEEEEcCCCCchhhHHHHHHHHHhCCCCEEEeCCHHHHHHHh
Q psy16564 31 GVSDINKALQQVLKTARAHDGLAKGLHEAAKALDRREAQLCVLADNCDEPAYKKLVQALCSEHQIPLIKVDNNKKLGEWA 110 (157)
Q Consensus 31 ~~m~~~k~L~~lL~~A~~agklv~G~~~v~KaL~kgkakLVIlA~D~s~~~~~~~l~~lc~~~~Ipvi~v~sk~eLG~a~ 110 (157)
-|+++++.+.++|++|+++|+++.|.++|+++|++|+++|||+|+|++|..+..+|+.+|++++||+++++|+.+||+||
T Consensus 7 ~p~~l~~~i~~~L~lA~kag~l~~G~~~v~kal~~gka~lViiA~D~~~~~~~~~l~~lc~~~~Vp~~~~~sk~eLG~a~ 86 (119)
T 1rlg_A 7 VPEDMQNEALSLLEKVRESGKVKKGTNETTKAVERGLAKLVYIAEDVDPPEIVAHLPLLCEEKNVPYIYVKSKNDLGRAV 86 (119)
T ss_dssp CCSHHHHHHHHHHHHHHHHSEEEESHHHHHHHHTTTCCSEEEEESCCSCSTTTTHHHHHHHHHTCCEEEESCHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHHhCCeeECHHHHHHHHHcCCCcEEEEeCCCChHHHHHHHHHHHHHcCCCEEEeCCHHHHHHHh
Confidence 45678888889999999999999999999999999999999999999995579999999999999999999999999999
Q ss_pred CCCccccCCCccceeeeEEEEEecCchhHHhhh
Q psy16564 111 GLSKLDNMGKARKVVGCSCVVIKVRNWFLIICS 143 (157)
Q Consensus 111 G~~~~~~~gk~rki~~~s~vaI~D~g~~~~~~~ 143 (157)
|+. ++|++++|+|+|+++.+.+
T Consensus 87 G~~-----------~~~~~vaI~d~g~a~~~~~ 108 (119)
T 1rlg_A 87 GIE-----------VPCASAAIINEGELRKELG 108 (119)
T ss_dssp TCS-----------SCCSEEEEEECGGGHHHHH
T ss_pred CCC-----------CCeEEEEEecCchHHHHHH
Confidence 976 5789999999999986554
No 17
>1w41_A 50S ribosomal protein L30E; electrostatic interactions, thermostability, protein engineering; 1.7A {Thermococcus celer} SCOP: d.79.3.1 PDB: 3n4y_A 3lfo_A 1w40_A 1go0_A 1go1_A 1h7m_A 1w42_A 1w3e_X 3ra6_A 3ra5_A 3n4z_A 2bo1_A
Probab=99.92 E-value=7.7e-25 Score=157.93 Aligned_cols=91 Identities=16% Similarity=0.188 Sum_probs=84.1
Q ss_pred HHHHHHHHhcCCceeeHHHHHHHHhcCCeeEEEEcCCCCchhhHHHHHHHHHhCCCCEEEe-CCHHHHHHHhCCCccccC
Q psy16564 40 QQVLKTARAHDGLAKGLHEAAKALDRREAQLCVLADNCDEPAYKKLVQALCSEHQIPLIKV-DNNKKLGEWAGLSKLDNM 118 (157)
Q Consensus 40 ~~lL~~A~~agklv~G~~~v~KaL~kgkakLVIlA~D~s~~~~~~~l~~lc~~~~Ipvi~v-~sk~eLG~a~G~~~~~~~ 118 (157)
.++|++|+++|+++.|.++|+++|++|+++|||+|+|+++ +++++|+.+|++++||++.+ +|+.+||+|||+.
T Consensus 5 ~~~L~la~kagkl~~G~~~v~kai~~gka~lViiA~D~~~-~~~~~l~~~c~~~~vp~~~~~~s~~eLG~a~G~~----- 78 (101)
T 1w41_A 5 AFELRKAQDTGKIVMGARKSIQYAKMGGAKLIIVARNARP-DIKEDIEYYARLSGIPVYEFEGTSVELGTLLGRP----- 78 (101)
T ss_dssp HHHHHHHHHHSEEEESHHHHHHHHHHTCCSEEEEETTSCH-HHHHHHHHHHHHHTCCEEEESSCHHHHHHHTTCS-----
T ss_pred HHHHHHHHHcCCEeECHHHHHHHHHcCCCcEEEEeCCCCH-HHHHHHHHHHHhcCCCEEEecCCHHHHHHHhCCC-----
Confidence 3788999999999999999999999999999999999887 89999999999999999987 8999999999976
Q ss_pred CCccceeeeEEEEEecCchhHHhh
Q psy16564 119 GKARKVVGCSCVVIKVRNWFLIIC 142 (157)
Q Consensus 119 gk~rki~~~s~vaI~D~g~~~~~~ 142 (157)
+++++++|+|+|+++|+.
T Consensus 79 ------~~~~~vai~d~g~a~i~~ 96 (101)
T 1w41_A 79 ------HTVSALAVVDPGASRILA 96 (101)
T ss_dssp ------SCCCEEEEEECTTCCGGG
T ss_pred ------CcEEEEEEecCCHHHHHH
Confidence 467899999999999443
No 18
>3cpq_A 50S ribosomal protein L30E; RNA-protein, elongation factor, ribonucleoprotein, structural genomics, NPPSFA; 1.90A {Methanocaldococcus jannaschii}
Probab=99.91 E-value=1.3e-24 Score=159.35 Aligned_cols=93 Identities=18% Similarity=0.222 Sum_probs=85.3
Q ss_pred HHHHHHHHHHhcCCceeeHHHHHHHHhcCCeeEEEEcCCCCchhhHHHHHHHHHhCCCCEEEe-CCHHHHHHHhCCCccc
Q psy16564 38 ALQQVLKTARAHDGLAKGLHEAAKALDRREAQLCVLADNCDEPAYKKLVQALCSEHQIPLIKV-DNNKKLGEWAGLSKLD 116 (157)
Q Consensus 38 ~L~~lL~~A~~agklv~G~~~v~KaL~kgkakLVIlA~D~s~~~~~~~l~~lc~~~~Ipvi~v-~sk~eLG~a~G~~~~~ 116 (157)
.+.++|++|+++|+++.|.++|+++|++|+++|||+|+|+++ ++..+|+.+|++++||++.+ +|+.+||+|||+.
T Consensus 8 ~i~~~L~la~kagkl~~G~~~v~kai~~gka~lViiA~D~~~-~~~~~l~~~c~~~~Vp~~~~~~sk~eLG~a~G~~--- 83 (110)
T 3cpq_A 8 DVNKAIRTAVDTGKVILGSKRTIKFVKHGEGKLVVLAGNIPK-DLEEDVKYYAKLSNIPVYQHKITSLELGAVCGKP--- 83 (110)
T ss_dssp HHHHHHHHHHHHSEEEESHHHHHHHHHTTCCSEEEECTTCBH-HHHHHHHHHHHHTTCCEEECCSCHHHHHHHTTCS---
T ss_pred HHHHHHHHHHHcCCeeeCHHHHHHHHHcCCceEEEEeCCCCH-HHHHHHHHHHHHcCCCEEEEcCCHHHHHHHhCCc---
Confidence 344899999999999999999999999999999999999966 99999999999999999998 8999999999976
Q ss_pred cCCCccceeeeEEEEEecCchhHHhh
Q psy16564 117 NMGKARKVVGCSCVVIKVRNWFLIIC 142 (157)
Q Consensus 117 ~~gk~rki~~~s~vaI~D~g~~~~~~ 142 (157)
+.+++++|+|+|+++|+.
T Consensus 84 --------~~~s~vaI~d~g~a~i~~ 101 (110)
T 3cpq_A 84 --------FPVAALLVLDEGLSNIME 101 (110)
T ss_dssp --------SCCSEEEEEECTTCCHHH
T ss_pred --------cceEEEEEecCCHHHHHH
Confidence 457899999999999443
No 19
>2kg4_A Growth arrest and DNA-damage-inducible protein GA alpha; GADD45, flexible regions, monomer cycle; NMR {Homo sapiens}
Probab=99.91 E-value=3.1e-24 Score=168.27 Aligned_cols=106 Identities=28% Similarity=0.428 Sum_probs=98.8
Q ss_pred CCcc-cHHHHHHHHHHHHHhcCCceeeHHHHHHHH--hcCCeeEEEEcCCCCchhh------HHHHHHHHHhCCCCEEEe
Q psy16564 30 EGVS-DINKALQQVLKTARAHDGLAKGLHEAAKAL--DRREAQLCVLADNCDEPAY------KKLVQALCSEHQIPLIKV 100 (157)
Q Consensus 30 ~~~m-~~~k~L~~lL~~A~~agklv~G~~~v~KaL--~kgkakLVIlA~D~s~~~~------~~~l~~lc~~~~Ipvi~v 100 (157)
..+| +++++|+++|+.|+.+++++.|.++++|+| ++|++.|||||.|++++.+ ..+++.||++++||+++|
T Consensus 13 ~~~m~~l~~al~evLk~A~~~~~l~~G~kEt~KaL~~~k~~a~lcvLA~D~d~~~~i~~hi~~~li~alC~E~~Ip~i~V 92 (165)
T 2kg4_A 13 TERMDKVGDALEEVLSKALSQRTITVGVYEAAKLLNVDPDNVVLCLLAADEDDDRDVALQIHFTLIQAFCCENDINILRV 92 (165)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHTCEEECGGGHHHHHHHCTTTEEEEEEECCTGGGGCHHHHHHHHHHHHHHHHTTCCEEEE
T ss_pred hhhHHHHHHHHHHHHHHHHHcCCeeecHHHHHHHHhcCCCcEEEEEEeCCCCccchhhhhccHHHHHHHHHHcCCCEEEE
Confidence 5578 899999999999999999999999999999 9999999999999985577 777889999999999999
Q ss_pred CCHHHHHHHhCC------CccccCCCccceeeeEEEEEecCchh
Q psy16564 101 DNNKKLGEWAGL------SKLDNMGKARKVVGCSCVVIKVRNWF 138 (157)
Q Consensus 101 ~sk~eLG~a~G~------~~~~~~gk~rki~~~s~vaI~D~g~~ 138 (157)
+|+.+||+|||. ++.+++|+||+ |||++|+|+|..
T Consensus 93 ~s~k~LG~a~Gi~~~~~~~~~d~~g~~r~---~scv~V~~~g~~ 133 (165)
T 2kg4_A 93 SNPGRLAELLLLETDAGPAASEGAEQPPD---LHCVLVTNPHSS 133 (165)
T ss_dssp SCHHHHHHHHHHTTTCSSCCCCSSCCCSC---SCEEEEECCSSC
T ss_pred CCHHHHHHHHCCcccccccccccCCCccc---ceEEEEeccccc
Confidence 999999999997 78999999974 999999999976
No 20
>1xbi_A 50S ribosomal protein L7AE; alpha-beta-alpha sandwich fold, RNA binding protein/structural protein complex; HET: EPE; 1.45A {Methanocaldococcus jannaschii} SCOP: d.79.3.1 PDB: 1ra4_A* 1sds_A 3paf_A
Probab=99.90 E-value=4.4e-24 Score=158.87 Aligned_cols=99 Identities=28% Similarity=0.372 Sum_probs=90.4
Q ss_pred CCcccHHHHHHHHHHHHHhcCCceeeHHHHHHHHhcCCeeEEEEcCCCCchhhHHHHHHHHHhCCCCEEEeCCHHHHHHH
Q psy16564 30 EGVSDINKALQQVLKTARAHDGLAKGLHEAAKALDRREAQLCVLADNCDEPAYKKLVQALCSEHQIPLIKVDNNKKLGEW 109 (157)
Q Consensus 30 ~~~m~~~k~L~~lL~~A~~agklv~G~~~v~KaL~kgkakLVIlA~D~s~~~~~~~l~~lc~~~~Ipvi~v~sk~eLG~a 109 (157)
+.++++++.+.++|++| |+++.|.++|+++|++|+++|||+|+|++|..+..+|+.+|++++||+++++|+.+||+|
T Consensus 11 ~~p~~l~~k~~~ll~~A---gkl~~G~~~v~kai~~gka~lViiA~D~~p~~~~~~l~~lc~~~~VP~~~v~sk~eLG~a 87 (120)
T 1xbi_A 11 KVPEEIQKELLDAVAKA---QKIKKGANEVTKAVERGIAKLVIIAEDVKPEEVVAHLPYLCEEKGIPYAYVASKQDLGKA 87 (120)
T ss_dssp CCCHHHHHHHHHHHHTC---SEEEESHHHHHHHHHHTCCSEEEEESCCSSGGGTTTHHHHHHHHTCCEEEESCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHc---CCccccHHHHHHHHHcCCceEEEEcCCCChHHHHHHHHHHHHhcCCCEEEeCCHHHHHHH
Confidence 34567888888999998 999999999999999999999999999999667999999999999999999999999999
Q ss_pred hCCCccccCCCccceeeeEEEEEecCchhHHhh
Q psy16564 110 AGLSKLDNMGKARKVVGCSCVVIKVRNWFLIIC 142 (157)
Q Consensus 110 ~G~~~~~~~gk~rki~~~s~vaI~D~g~~~~~~ 142 (157)
||+. ++|++++|+|+|+++.+.
T Consensus 88 ~G~~-----------~~~s~vaI~d~g~a~~l~ 109 (120)
T 1xbi_A 88 AGLE-----------VAASSVAIINEGDAEELK 109 (120)
T ss_dssp TTCS-----------SCCSEEEEEECSCHHHHH
T ss_pred hCCC-----------CCEEEEEEeccchHHHHH
Confidence 9975 578999999999998643
No 21
>3vi6_A 60S ribosomal protein L30; three-layer alpha/beta/ALPA; 1.59A {Homo sapiens} PDB: 2zkr_6 1ysh_C
Probab=99.88 E-value=2.3e-23 Score=156.41 Aligned_cols=98 Identities=19% Similarity=0.168 Sum_probs=85.8
Q ss_pred HHHHHHHHHHHHHhcCCceeeHHHHHHHHhcCCeeEEEEcCCCCchhhHHHHHHHHHhCCCCEEE-eCCHHHHHHHhCCC
Q psy16564 35 INKALQQVLKTARAHDGLAKGLHEAAKALDRREAQLCVLADNCDEPAYKKLVQALCSEHQIPLIK-VDNNKKLGEWAGLS 113 (157)
Q Consensus 35 ~~k~L~~lL~~A~~agklv~G~~~v~KaL~kgkakLVIlA~D~s~~~~~~~l~~lc~~~~Ipvi~-v~sk~eLG~a~G~~ 113 (157)
.++.+ ++|++|+++|+++.|.++|+++|++|+++|||+|+|++| +++.+++.+|...++|+.+ ++|+.|||+|||+.
T Consensus 12 ~~~i~-~~L~lA~kaGklv~G~~~v~kaIr~gkakLVIiA~Das~-~~~~ki~~~~~~~~~~V~~~~~sk~eLG~A~Gk~ 89 (125)
T 3vi6_A 12 LESIN-SRLQLVMKSGKYVLGYKQTLKMIRQGKAKLVILANNCPA-LRKSEIEYYAMLAKTGVHHYSGNNIELGTACGKY 89 (125)
T ss_dssp SSCSH-HHHHHHHHHSEEEESHHHHHHHHHTTCCSEEEECTTSCH-HHHHHHHHHHHHTTCEEEECSSCHHHHHHHTTCS
T ss_pred HHHHH-HHHHHHHHhCCeeeCHHHHHHHHHcCCceEEEEeCCCCH-HHHHHHHHHHHHhCCCcEEEcCCHHHHHHHhCCc
Confidence 44556 999999999999999999999999999999999999999 8999999999998888764 67999999999986
Q ss_pred ccccCCCccceeeeEEEEEecCchhHHhhhcc
Q psy16564 114 KLDNMGKARKVVGCSCVVIKVRNWFLIICSRK 145 (157)
Q Consensus 114 ~~~~~gk~rki~~~s~vaI~D~g~~~~~~~~~ 145 (157)
+++++++|+|+||++++.+..
T Consensus 90 -----------~~v~~vaI~D~G~a~~l~~~~ 110 (125)
T 3vi6_A 90 -----------YRVCTLAIIDPGDSDIIRSMP 110 (125)
T ss_dssp -----------SCCCEEEEEECTTCCCC----
T ss_pred -----------ccEEEEEEeCchhHHHHHHHH
Confidence 457889999999999887654
No 22
>3v7e_A Ribosome-associated protein L7AE-like; RNA-protein complex, K-turn, L7AE-like, A member L7AE/L30E superfamily; HET: SAM; 2.80A {Bacillus subtilis}
Probab=99.88 E-value=1.5e-22 Score=141.55 Aligned_cols=79 Identities=27% Similarity=0.399 Sum_probs=73.0
Q ss_pred HHHHHhcCCceeeHHHHHHHHhcCCeeEEEEcCCCCchhhHHHHHHHHHhCCCCEEEeCCHHHHHHHhCCCccccCCCcc
Q psy16564 43 LKTARAHDGLAKGLHEAAKALDRREAQLCVLADNCDEPAYKKLVQALCSEHQIPLIKVDNNKKLGEWAGLSKLDNMGKAR 122 (157)
Q Consensus 43 L~~A~~agklv~G~~~v~KaL~kgkakLVIlA~D~s~~~~~~~l~~lc~~~~Ipvi~v~sk~eLG~a~G~~~~~~~gk~r 122 (157)
+...+++|+++.|.++++++|++|+++|||||+|++| ++..+|+.+|++++||+++++++.+||+|||+.
T Consensus 3 ~~~~~kagk~~~G~~~v~kai~~gkaklViiA~D~~~-~~~~~i~~lc~~~~Ip~~~v~sk~eLG~a~Gk~--------- 72 (82)
T 3v7e_A 3 YDKVSQAKSIIIGTKQTVKALKRGSVKEVVVAKDADP-ILTSSVVSLAEDQGISVSMVESMKKLGKACGIE--------- 72 (82)
T ss_dssp HHHHHHCSEEEESHHHHHHHHTTTCEEEEEEETTSCH-HHHHHHHHHHHHHTCCEEEESCHHHHHHHHTCS---------
T ss_pred HHHHHHcCCeeEcHHHHHHHHHcCCeeEEEEeCCCCH-HHHHHHHHHHHHcCCCEEEECCHHHHHHHhCCC---------
Confidence 3456789999999999999999999999999999999 899999999999999999999999999999986
Q ss_pred ceeeeEEEEEe
Q psy16564 123 KVVGCSCVVIK 133 (157)
Q Consensus 123 ki~~~s~vaI~ 133 (157)
+++++++|+
T Consensus 73 --~~~~~~ai~ 81 (82)
T 3v7e_A 73 --VGAAAVAII 81 (82)
T ss_dssp --SCCSEEEEE
T ss_pred --CCEEEEEEe
Confidence 457788875
No 23
>3cg6_A Growth arrest and DNA-damage-inducible 45 gamma; alpha/beta, cell cycle; 1.70A {Mus musculus} PDB: 2wal_A
Probab=99.84 E-value=8.3e-21 Score=145.95 Aligned_cols=103 Identities=27% Similarity=0.444 Sum_probs=86.6
Q ss_pred Ccc-cHHHHHHHHHHHHHhcCCceeeHHHHHHHHhcC--CeeEEEEcCCCCc------hhhHHHHHHHHHhCCCCEEEeC
Q psy16564 31 GVS-DINKALQQVLKTARAHDGLAKGLHEAAKALDRR--EAQLCVLADNCDE------PAYKKLVQALCSEHQIPLIKVD 101 (157)
Q Consensus 31 ~~m-~~~k~L~~lL~~A~~agklv~G~~~v~KaL~kg--kakLVIlA~D~s~------~~~~~~l~~lc~~~~Ipvi~v~ 101 (157)
..| +++.||+.+|+.|...+.|+.|.+++.|+|.++ ++.|||||.||++ +.+.+++++||.+++||++.|+
T Consensus 4 ~~m~~v~~ALqeVLk~Al~~dgL~~Gl~EaaKaLdk~p~~a~lCvLA~dcd~e~D~a~~~y~kLveAlC~E~~I~lIkVd 83 (146)
T 3cg6_A 4 ARMQGAGKALHELLLSAQRQGCLTAGVYESAKVLNVDPDNVTFCVLAADEEDEGDIALQIHFTLIQAFCCENDIDIVRVG 83 (146)
T ss_dssp CCCSCHHHHHHHHHHHHHHHTCEEESHHHHHHHHHHCGGGEEEEEEECCTGGGGCHHHHHHHHHHHHHHHHTTCEEEEEC
T ss_pred chhcCHHHHHHHHHHHHHHhCCccccHHHHHHHHhcCCCeEEEEEecCCCccccchhHHHHHHHHHHHHhhcCCCeEEeC
Confidence 457 899999999999999999999999999999996 9999999999983 3899999999999999999999
Q ss_pred CHHHHHHHhCCCccccCCCccceeeeEEEEEecCchh
Q psy16564 102 NNKKLGEWAGLSKLDNMGKARKVVGCSCVVIKVRNWF 138 (157)
Q Consensus 102 sk~eLG~a~G~~~~~~~gk~rki~~~s~vaI~D~g~~ 138 (157)
+..+||+++| +.+++|+|| +|||++|+|+|.-
T Consensus 84 d~kkLgew~G--k~d~~g~pr---~~sCvvV~d~g~e 115 (146)
T 3cg6_A 84 DVQRLAAIVG--SDEEGGAPG---DLHCILISNPNED 115 (146)
T ss_dssp CHHHHHHHC---------------CCSEEEEECCC--
T ss_pred chhHHHHHhC--CcCCCCCCC---CCEEEEEecCCcc
Confidence 9999999999 679999997 7999999999965
No 24
>2zkr_f 60S ribosomal protein L7A; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=99.81 E-value=1.3e-20 Score=157.00 Aligned_cols=97 Identities=22% Similarity=0.321 Sum_probs=83.8
Q ss_pred hcCCceeeHHHHHHHHhcCCeeEEEEcCCCCchhhHHHHHHHHHhCCCCEEEeCCHHHHHHHhCCCccccCCCccceeee
Q psy16564 48 AHDGLAKGLHEAAKALDRREAQLCVLADNCDEPAYKKLVQALCSEHQIPLIKVDNNKKLGEWAGLSKLDNMGKARKVVGC 127 (157)
Q Consensus 48 ~agklv~G~~~v~KaL~kgkakLVIlA~D~s~~~~~~~l~~lc~~~~Ipvi~v~sk~eLG~a~G~~~~~~~gk~rki~~~ 127 (157)
+.+.++.|.++|+++|++|+++|||||+||+|..+..+|+.+|++++|||++++|+.+||+|||+. +|
T Consensus 132 ~~~~L~~G~keV~KaIekgkAkLVIIA~DasP~ei~~~Lp~LC~~~~VPyi~v~sk~eLG~A~Gkk------------~~ 199 (266)
T 2zkr_f 132 RPPVLRAGVNTVTTLVENKKAQLVVIAHDVDPIELVVFLPALCRKMGVPYCIIKGKARLGHLVHRK------------TC 199 (266)
T ss_dssp SCCCCCBSHHHHHHHHHTTCCSEEEEESCCSSSTTTTHHHHHHHHHTCCEEEESCHHHHHHHHTSS------------CC
T ss_pred CCCeeeeChHHHHHHHHhCCceEEEEecCCCHHHHHHHHHHHHHhcCCCEEEECCHHHHHHHhCCC------------Cc
Confidence 357899999999999999999999999999998899999999999999999999999999999974 47
Q ss_pred EEEEEecCchhHHhhhccccceeeecccC
Q psy16564 128 SCVVIKVRNWFLIICSRKSTQVLSVNYNK 156 (157)
Q Consensus 128 s~vaI~D~g~~~~~~~~~~~~~~~~~~~~ 156 (157)
+|++|+|+|.++.-......+++..|||.
T Consensus 200 s~VAItD~G~eD~~al~klve~ik~~y~d 228 (266)
T 2zkr_f 200 TTVAFTQVNSEDKGALAKLVEAIRTNYND 228 (266)
T ss_dssp SEEEETTCSSTTTTHHHHHHHHHC-----
T ss_pred eEEEEeecCcchHHHHHHHHHHHHHhhhh
Confidence 89999999988766666677788888874
No 25
>3jyw_G 60S ribosomal protein L8(A); eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus} PDB: 1s1i_G
Probab=99.80 E-value=2e-20 Score=138.58 Aligned_cols=80 Identities=16% Similarity=0.277 Sum_probs=73.5
Q ss_pred hcCCceeeHHHHHHHHhcCCeeEEEEcCCCCchhhHHHHHHHHHhCCCCEEEeCCHHHHHHHhCCCccccCCCccceeee
Q psy16564 48 AHDGLAKGLHEAAKALDRREAQLCVLADNCDEPAYKKLVQALCSEHQIPLIKVDNNKKLGEWAGLSKLDNMGKARKVVGC 127 (157)
Q Consensus 48 ~agklv~G~~~v~KaL~kgkakLVIlA~D~s~~~~~~~l~~lc~~~~Ipvi~v~sk~eLG~a~G~~~~~~~gk~rki~~~ 127 (157)
+-..+..|.++|+++|++|+++|||||.|++|..+..+|+.+|++++|||++++++.+||++||+. .|
T Consensus 22 ~~~~l~~G~~~v~kaI~~gka~LVvIA~D~~p~~i~~~l~~lC~~~~VP~~~v~sk~~LG~a~G~k------------~~ 89 (113)
T 3jyw_G 22 KPYAVKYGLNHVVALIENKKAKLVLIANDVDPIELVVFLPALCKKMGVPYAIVKGKARLGTLVNQK------------TS 89 (113)
T ss_dssp SSSCEEESHHHHHHTTTTTCCSEEEECSCCSSHHHHTTHHHHHHHTTCCCEECSCSTTTHHHHCSS------------SC
T ss_pred CCchhhchHHHHHHHHHcCCceEEEEeCCCCHHHHHHHHHHHHHHcCCCEEEECCHHHHHHHHCCC------------Cc
Confidence 445689999999999999999999999999997788999999999999999999999999999975 27
Q ss_pred EEEEEecCchhH
Q psy16564 128 SCVVIKVRNWFL 139 (157)
Q Consensus 128 s~vaI~D~g~~~ 139 (157)
++++|+|+|+.+
T Consensus 90 a~vai~d~~~ed 101 (113)
T 3jyw_G 90 AVAALTEVRAED 101 (113)
T ss_dssp CSEEEECSCSST
T ss_pred EEEEEEeCCHHh
Confidence 889999999765
No 26
>4a17_F RPL7A, 60S ribosomal protein L9; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_F 4a1c_F 4a1e_F
Probab=99.80 E-value=7.5e-20 Score=151.48 Aligned_cols=94 Identities=19% Similarity=0.313 Sum_probs=86.1
Q ss_pred CceeeHHHHHHHHhcCCeeEEEEcCCCCchhhHHHHHHHHHhCCCCEEEeCCHHHHHHHhCCCccccCCCccceeeeEEE
Q psy16564 51 GLAKGLHEAAKALDRREAQLCVLADNCDEPAYKKLVQALCSEHQIPLIKVDNNKKLGEWAGLSKLDNMGKARKVVGCSCV 130 (157)
Q Consensus 51 klv~G~~~v~KaL~kgkakLVIlA~D~s~~~~~~~l~~lc~~~~Ipvi~v~sk~eLG~a~G~~~~~~~gk~rki~~~s~v 130 (157)
.+..|.++|+++|++|+++|||||.|++|.+++.+|+++|++++|||+++.++.+||++||+. .|+|+
T Consensus 124 ~lk~GvneVtKaIekgKAqLVVIA~DvdPielv~~LPaLCee~~VPY~~V~sK~~LG~avGrK------------t~s~V 191 (255)
T 4a17_F 124 VLKYGLNHITTLIENKQAKLVVIAHDVDPIELVIFLPQLCRKNDVPFAFVKGKAALGKLVNKK------------TATAV 191 (255)
T ss_dssp CEEECHHHHHHHHHTSCCSEEEEESCCSSTHHHHHHHHHHHHTTCCEEEESCHHHHHHHHTSS------------CCSEE
T ss_pred eeecchHHHHHHHHcCCceEEEEeCCCChHHHHHHHHHHHHHcCCCEEEECCHHHHHHHhCCC------------cceEE
Confidence 367899999999999999999999999999999999999999999999999999999999964 38999
Q ss_pred EEecCchhHHhhhccccceeeecccC
Q psy16564 131 VIKVRNWFLIICSRKSTQVLSVNYNK 156 (157)
Q Consensus 131 aI~D~g~~~~~~~~~~~~~~~~~~~~ 156 (157)
+|+|+|..+--.-....+++.+|||.
T Consensus 192 aitdv~~EDk~al~kLve~iktnynd 217 (255)
T 4a17_F 192 ALTEVRNEDKAKLQQFSELFKTNYNA 217 (255)
T ss_dssp EECCCCHHHHHHHHHHHHHHHHHTTT
T ss_pred EeeccCHHHHHHHHHHHHHHHhhccc
Confidence 99999998766667778889999984
No 27
>3izc_H 60S ribosomal protein RPL8 (L7AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_H 3o58_H 3o5h_H 3u5e_G 3u5i_G 4b6a_G
Probab=99.80 E-value=2.9e-20 Score=154.13 Aligned_cols=93 Identities=16% Similarity=0.281 Sum_probs=84.6
Q ss_pred ceeeHHHHHHHHhcCCeeEEEEcCCCCchhhHHHHHHHHHhCCCCEEEeCCHHHHHHHhCCCccccCCCccceeeeEEEE
Q psy16564 52 LAKGLHEAAKALDRREAQLCVLADNCDEPAYKKLVQALCSEHQIPLIKVDNNKKLGEWAGLSKLDNMGKARKVVGCSCVV 131 (157)
Q Consensus 52 lv~G~~~v~KaL~kgkakLVIlA~D~s~~~~~~~l~~lc~~~~Ipvi~v~sk~eLG~a~G~~~~~~~gk~rki~~~s~va 131 (157)
+..|.++|+++|++|+++|||||+||+|..+..+|+.+|++++||+++++++.+||++||+. .|+|++
T Consensus 132 lk~G~keV~KaIekgKAkLVVIA~DadP~eivk~LpaLC~k~gVPy~~V~sK~eLG~A~Gkk------------~~s~VA 199 (256)
T 3izc_H 132 VKYGLNHVVALIENKKAKLVLIANDVDPIELVVFLPALCKKMGVPYAIVKGKARLGTLVNQK------------TSAVAA 199 (256)
T ss_dssp EEESHHHHHHHHHHTCCSEEEEESCCSSGGGTTHHHHHHHHHTCCEEEESCHHHHHHHTTCS------------SCCSEE
T ss_pred hhccHHHHHHHHHhCcceEEEEeCCCChHHHHHHHHHHHHhcCCCEEEECCHHHHHHHhCCC------------CcEEEE
Confidence 57899999999999999999999999998899999999999999999999999999999974 378999
Q ss_pred EecCchhHHhhhccccceeeecccC
Q psy16564 132 IKVRNWFLIICSRKSTQVLSVNYNK 156 (157)
Q Consensus 132 I~D~g~~~~~~~~~~~~~~~~~~~~ 156 (157)
|+|+|+.+--.-....+++..|||.
T Consensus 200 ItD~g~eDk~al~kLve~iktnynd 224 (256)
T 3izc_H 200 LTEVRAEDEAALAKLVSTIDANFAD 224 (256)
T ss_dssp EESSCCSCCHHHHHHHHHHHHHCCC
T ss_pred eecCChhhHHHHHHHHHHHHhhhhh
Confidence 9999988766666777888999984
No 28
>3ffm_A Growth arrest and DNA-damage-inducible protein GADD45 gamma; beta-turn-helix, cell cycle; 2.30A {Homo sapiens}
Probab=99.78 E-value=7.7e-19 Score=137.29 Aligned_cols=104 Identities=28% Similarity=0.431 Sum_probs=91.8
Q ss_pred CCccc-HHHHHHHHHHHHHhcCCceeeHHHHHHHHhc--CCeeEEEEcCCCC-ch-----hhHHHHHHHHHhCCCCEEEe
Q psy16564 30 EGVSD-INKALQQVLKTARAHDGLAKGLHEAAKALDR--REAQLCVLADNCD-EP-----AYKKLVQALCSEHQIPLIKV 100 (157)
Q Consensus 30 ~~~m~-~~k~L~~lL~~A~~agklv~G~~~v~KaL~k--gkakLVIlA~D~s-~~-----~~~~~l~~lc~~~~Ipvi~v 100 (157)
..+|+ ++.||+.+|+.|...+.|+.|..++.|+|.+ .++.|||||.|++ +. .+.++|++||.+++||++.|
T Consensus 24 ~~~m~~v~~ALqeVLk~Al~~dgL~~Gl~EaaKaLd~~p~~a~LCvLA~dc~~e~D~alqmy~kLVeAlC~E~~I~LIkV 103 (167)
T 3ffm_A 24 TARMQGAGKALHELLLSAQRQGCLTAGVYESAKVLNVDPDNVTFCVLAAGEEDEGDIALQIHFTLIQAFCCENDIDIVRV 103 (167)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTTCEEESHHHHHHHHHHCGGGEEEEEEECCGGGTTCHHHHHHHHHHHHHHHHTTCEEEEE
T ss_pred hhhhhhHHHHHHHHHHHHHHhCCccccHHHHHHHhccCCCeEEEEEEeCCCCcccchhHHHHHHHHHHHHhhcCCCeEEe
Confidence 45786 8999999999999999999999999999998 4899999999985 11 27899999999999999999
Q ss_pred CCHHHHHHHhCCCccccCCCccceeeeEEEEEecCchh
Q psy16564 101 DNNKKLGEWAGLSKLDNMGKARKVVGCSCVVIKVRNWF 138 (157)
Q Consensus 101 ~sk~eLG~a~G~~~~~~~gk~rki~~~s~vaI~D~g~~ 138 (157)
++..+||+++|. .+..||| ++|||++|+|+|..
T Consensus 104 ~d~kkLgew~G~--~~~~~k~---~~csCVlVtd~ge~ 136 (167)
T 3ffm_A 104 GDVQRLAAIVGA--GEEAGAP---GDLHCILISNPNED 136 (167)
T ss_dssp SCHHHHHHHHTT--SCCSSSC---SCCSEEEEECSSSS
T ss_pred CCcchHHHHhCc--CCCCCCC---CccEEEEECCCCcc
Confidence 999999999993 3555666 56999999999974
No 29
>3iz5_H 60S ribosomal protein L7A (L7AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_H
Probab=99.76 E-value=4.4e-19 Score=146.70 Aligned_cols=94 Identities=20% Similarity=0.283 Sum_probs=84.9
Q ss_pred CceeeHHHHHHHHhcCCeeEEEEcCCCCchhhHHHHHHHHHhCCCCEEEeCCHHHHHHHhCCCccccCCCccceeeeEEE
Q psy16564 51 GLAKGLHEAAKALDRREAQLCVLADNCDEPAYKKLVQALCSEHQIPLIKVDNNKKLGEWAGLSKLDNMGKARKVVGCSCV 130 (157)
Q Consensus 51 klv~G~~~v~KaL~kgkakLVIlA~D~s~~~~~~~l~~lc~~~~Ipvi~v~sk~eLG~a~G~~~~~~~gk~rki~~~s~v 130 (157)
.+..|.++|+++|++++++|||||.|++|.+++.+|++||++.||||+++.++.+||+++|+. .|+|+
T Consensus 127 ~lk~GvneVTklVE~kKAqLVVIA~DVdPiElV~fLPaLC~k~gVPY~iVk~KarLG~~vgrK------------tct~V 194 (258)
T 3iz5_H 127 VVKYGLNHVTYLIEQSKAQLVVIAHDVDPIELVVWLPALCRKMEVPYCIVKGKARLGSIVHKK------------TASVL 194 (258)
T ss_dssp CEEESHHHHHHHHHTTCEEEEEEESCCSSTHHHHHHHHHHTTTTCCEEEESCHHHHHHHTTCS------------SCCSE
T ss_pred eeecccHHHHHHHHcCcceEEEEeCCCChHHHHhHHHHHHHhcCCCeEEECCHHHHHHHhCCc------------cceEE
Confidence 367899999999999999999999999999999999999999999999999999999999964 38999
Q ss_pred EEecCchhHHhhhccccceeeecccC
Q psy16564 131 VIKVRNWFLIICSRKSTQVLSVNYNK 156 (157)
Q Consensus 131 aI~D~g~~~~~~~~~~~~~~~~~~~~ 156 (157)
+++|.|+.+--.-....+.+.+|||.
T Consensus 195 a~t~v~~eDk~aLakLveairtnynd 220 (258)
T 3iz5_H 195 CLTTVKNEDKLEFSKILEAIKANFND 220 (258)
T ss_dssp EEEESCCSCCHHHHHHHHHHTTTSCC
T ss_pred EEEecCHHHHHHHHHHHHHHHhHhhh
Confidence 99999987655556667788899984
No 30
>3ir9_A Peptide chain release factor subunit 1; structural genomics, APC36528.1, C-terminal domain, PSI-2, protein structure initiative; 2.21A {Methanosarcina mazei}
Probab=95.47 E-value=0.088 Score=40.40 Aligned_cols=64 Identities=11% Similarity=0.136 Sum_probs=53.6
Q ss_pred HhcCCceeeHHHHHHHHhcCCeeEEEEcCCCCch--------------------------------------------hh
Q psy16564 47 RAHDGLAKGLHEAAKALDRREAQLCVLADNCDEP--------------------------------------------AY 82 (157)
Q Consensus 47 ~~agklv~G~~~v~KaL~kgkakLVIlA~D~s~~--------------------------------------------~~ 82 (157)
...|+.+.|.++|.+|++.|.+..++|..|-... .+
T Consensus 42 ~d~g~~~yG~~ev~~Ale~GAVetLlv~e~l~~~r~~~~c~~~~~~~~~~~~~~~~~~~~~~~~c~~~g~~~~~~e~~~~ 121 (166)
T 3ir9_A 42 ADSGKVAYGESQVRANLEINSVDVLLLSEDLRAERVTTKCSVCGYENKWTRRWKPGEPAPAAGNCPKCGSSLEVTDVTDI 121 (166)
T ss_dssp TCTTCEEESHHHHHHHHTTTCEEEEEEETTCCCEEEEEEESSSSCEEEEEECCCC--CCCCCCBCTTTCCBEEEEEEEEH
T ss_pred hCCCcEEEcHHHHHHHHHhCCceEEEEecCccceEEEEECCCCCceeEEEeecChhhcccccccccccCccchhhhHHHH
Confidence 3469999999999999999999999999885321 35
Q ss_pred HHHHHHHHHhCCCCEEEeCCHHHHHHHh
Q psy16564 83 KKLVQALCSEHQIPLIKVDNNKKLGEWA 110 (157)
Q Consensus 83 ~~~l~~lc~~~~Ipvi~v~sk~eLG~a~ 110 (157)
...|...++++|..+.++.+.-+-|.-+
T Consensus 122 ve~L~e~~~~~G~~v~ivs~~~eeG~ql 149 (166)
T 3ir9_A 122 VDEFSELADKSNAKVVFVSTDFDEGSQL 149 (166)
T ss_dssp HHHHHHHHHHTTCEEEEECSCSHHHHHH
T ss_pred HHHHHHHHHhcCCEEEEECCCChhHHHH
Confidence 6688889999999999999888877644
No 31
>3oby_A Protein pelota homolog; SM fold, hydrolase; 2.90A {Archaeoglobus fulgidus}
Probab=94.90 E-value=0.083 Score=45.10 Aligned_cols=72 Identities=18% Similarity=0.185 Sum_probs=54.1
Q ss_pred HHHHHHHHHhcCCceeeHHHHHHHHhcCCeeEEEEcCCCCchh----hHHHHHHHHHhCCCCEEEeCCH----HHHHHHh
Q psy16564 39 LQQVLKTARAHDGLAKGLHEAAKALDRREAQLCVLADNCDEPA----YKKLVQALCSEHQIPLIKVDNN----KKLGEWA 110 (157)
Q Consensus 39 L~~lL~~A~~agklv~G~~~v~KaL~kgkakLVIlA~D~s~~~----~~~~l~~lc~~~~Ipvi~v~sk----~eLG~a~ 110 (157)
+.+++....+.|+.++|.++|.+|++.|.+.-++|..|-.-.. ....|...++++|-.+.++.+. .+| +.+
T Consensus 253 le~f~~~l~~d~~a~YG~~eV~~Ale~GAVetLLIsd~l~r~~r~~~~~~~l~e~~~~~G~~v~i~S~~~e~G~qL-~~l 331 (352)
T 3oby_A 253 IDRLLEGIAKGERVAYGLDEVREAHNYRAIEVLLVADEFLLEEREKWDVDGLLREVEESGGKVVIMSTEFEPGKRL-MSL 331 (352)
T ss_dssp HHHHHHHHHHTCSEEESHHHHHHHHTTTCEEEEEEEHHHHHHHTTTSCHHHHHHHHHHTTCEEEEECTTSHHHHHH-HHT
T ss_pred HHHHHHHHhcCCcEEECHHHHHHHHHcCCceEEEEeccchhcccchHHHHHHHHHHHHcCCEEEEEcCCCcchhHH-hcC
Confidence 4444444444499999999999999999999999997742211 3456778889999999999987 455 455
Q ss_pred C
Q psy16564 111 G 111 (157)
Q Consensus 111 G 111 (157)
|
T Consensus 332 G 332 (352)
T 3oby_A 332 G 332 (352)
T ss_dssp T
T ss_pred C
Confidence 5
No 32
>1x52_A Pelota homolog, CGI-17; ERF1_3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.79.3.2
Probab=93.34 E-value=0.16 Score=37.19 Aligned_cols=73 Identities=19% Similarity=0.178 Sum_probs=54.4
Q ss_pred HHHHHHHH-HHHhcCCceeeHHHHHHHHhcCCeeEEEEcCCC---C-c---hhhHHHHHHHHHhCCCCEEEeCCHHHHHH
Q psy16564 37 KALQQVLK-TARAHDGLAKGLHEAAKALDRREAQLCVLADNC---D-E---PAYKKLVQALCSEHQIPLIKVDNNKKLGE 108 (157)
Q Consensus 37 k~L~~lL~-~A~~agklv~G~~~v~KaL~kgkakLVIlA~D~---s-~---~~~~~~l~~lc~~~~Ipvi~v~sk~eLG~ 108 (157)
+.+.++.. .++..|+.+.|..+|.+|++.|.+..++|..|. + + ..+.. |...++++|..+.++.+.-+-|.
T Consensus 23 ~ll~~f~~~i~~d~g~~~yG~~eV~~Ale~GAVetLLI~d~l~r~~d~~~~~~~~e-l~e~~~~~G~~V~ivs~~~~~G~ 101 (124)
T 1x52_A 23 KALDDFYKMLQHEPDRAFYGLKQVEKANEAMAIDTLLISDELFRHQDVATRSRYVR-LVDSVKENAGTVRIFSSLHVSGE 101 (124)
T ss_dssp HHHHHHHHHHHSCGGGEEESHHHHHHHHHTTCEEEEEEEHHHHTCSSHHHHHHHHH-HHHHHHHTTCEEEEECSSSHHHH
T ss_pred HHHHHHHHHHhcCCCcEEECHHHHHHHHHcCCccEEEechhhhcCCChHHHHHHHH-HHHHHHHcCCEEEEECCCCccHH
Confidence 34445554 344458999999999999999999999999862 1 1 12444 67778889999999998766665
Q ss_pred Hh
Q psy16564 109 WA 110 (157)
Q Consensus 109 a~ 110 (157)
-+
T Consensus 102 qL 103 (124)
T 1x52_A 102 QL 103 (124)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 33
>3j15_A Protein pelota; ribosome recycling, ribosome, archaea, translation-transport complex; HET: ADP; 6.60A {Pyrococcus furiosus}
Probab=93.00 E-value=0.29 Score=41.62 Aligned_cols=73 Identities=18% Similarity=0.206 Sum_probs=54.8
Q ss_pred HHHHHHHHH-HhcCCceeeHHHHHHHHhcCCeeEEEEcCCCCc---hhhHHHHHHHHHhCCCCEEEeCCH----HHHHHH
Q psy16564 38 ALQQVLKTA-RAHDGLAKGLHEAAKALDRREAQLCVLADNCDE---PAYKKLVQALCSEHQIPLIKVDNN----KKLGEW 109 (157)
Q Consensus 38 ~L~~lL~~A-~~agklv~G~~~v~KaL~kgkakLVIlA~D~s~---~~~~~~l~~lc~~~~Ipvi~v~sk----~eLG~a 109 (157)
.+.+++... +..|+.+.|.++|.+|++.|.+.-++|..|... ......|...++++|-.+..+++. .+| +.
T Consensus 266 lle~f~~~l~~d~g~a~yG~~eV~~Ale~GAVetLLV~d~l~r~~~~~~~~~l~e~~~~~G~~v~ivs~~~e~G~qL-~~ 344 (357)
T 3j15_A 266 LVEKVLENIARNNGLVAYGLKEVEEAVNYGAVETLLVLDELLKGELREKVEELMDAVRYSRGEVVVVSSEHEGGEKL-KA 344 (357)
T ss_dssp HHHHHHHHHHHSTTTEEESTHHHHHHHHHTCEEEEEEEHHHHTSSCCHHHHHHHHHHHHTTCEEEEECSSSTTHHHH-HH
T ss_pred HHHHHHHHHhcCCCcEEeCHHHHHHHHHhCCCcEEEEecccccccchHHHHHHHHHHHHcCCEEEEECCCCCcchhh-hc
Confidence 444444443 345999999999999999999999999876321 245667788899999999999965 456 45
Q ss_pred hC
Q psy16564 110 AG 111 (157)
Q Consensus 110 ~G 111 (157)
+|
T Consensus 345 lg 346 (357)
T 3j15_A 345 LG 346 (357)
T ss_dssp HC
T ss_pred CC
Confidence 55
No 34
>3agk_A Peptide chain release factor subunit 1; translation; 2.10A {Aeropyrum pernix}
Probab=92.95 E-value=0.36 Score=40.84 Aligned_cols=67 Identities=9% Similarity=0.066 Sum_probs=53.7
Q ss_pred HHHHHHHHH-HhcCCceeeHHHHHHHHhcCCeeEEEEcCCCCchhhHHHHHHHHHhCCCCEEEeCCHHHHH
Q psy16564 38 ALQQVLKTA-RAHDGLAKGLHEAAKALDRREAQLCVLADNCDEPAYKKLVQALCSEHQIPLIKVDNNKKLG 107 (157)
Q Consensus 38 ~L~~lL~~A-~~agklv~G~~~v~KaL~kgkakLVIlA~D~s~~~~~~~l~~lc~~~~Ipvi~v~sk~eLG 107 (157)
.+.++.... +..|+.+.|..+|.+|++.|.+..++|..| . +....|...+..+|-.++++.+.-+-|
T Consensus 285 ~l~~f~~~l~~~~g~a~yG~~eV~~Al~~GaVetLlv~d~--r-d~~~~L~e~a~~~G~~V~ivs~~~~~g 352 (373)
T 3agk_A 285 AMEEFKLHLAKGTGMIVYGEKDVEAALEMGAVKTLLIHES--R-EDLEEWVEKAKSSGAQVIVVPESLAEA 352 (373)
T ss_dssp HHHHHHHHHHTTCCCEEESHHHHHHHHHTTCEEEEEEETT--C-TTHHHHHHHHTTTTCEEEEECTTSTTH
T ss_pred HHHHHHHHHhcCCCcEeeCHHHHHHHHHhCCccEEEEeCC--h-hHHHHHHHHHHHcCCEEEEECCCCccH
Confidence 443444333 446999999999999999999999999998 3 466778888999999999999875555
No 35
>3e20_C Eukaryotic peptide chain release factor subunit 1; SUP35, SUP45, translation termination, peptide release, GTP- nucleotide-binding; 3.50A {Schizosaccharomyces pombe}
Probab=91.69 E-value=0.93 Score=39.65 Aligned_cols=73 Identities=11% Similarity=0.078 Sum_probs=55.9
Q ss_pred HHHHHHHHHH-hcCCceeeHHHHHHHHhcCCeeEEEEcCCCCc-------------------------------------
Q psy16564 38 ALQQVLKTAR-AHDGLAKGLHEAAKALDRREAQLCVLADNCDE------------------------------------- 79 (157)
Q Consensus 38 ~L~~lL~~A~-~agklv~G~~~v~KaL~kgkakLVIlA~D~s~------------------------------------- 79 (157)
.+.+++.... ..|+.+.|.++|.+|++.|.+.-++|..+..-
T Consensus 291 lle~f~~~l~~d~g~a~YG~~eV~~Ale~GAVetLLIsD~l~~~r~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~g 370 (441)
T 3e20_C 291 LIQRFFDEISLDSGKYCFGVVDTMNALQEGAVETLLCFADLDMIRYEFKNSEGNPVITYMTKEQEEKDSTNSFLLDKDTG 370 (441)
T ss_dssp HHHHHHHHHHTTCSCCCCSHHHHHHHHHSSCCSEEEEETTCCCEEC----------CCEECSCTTTCCC-----------
T ss_pred HHHHHHHHHhcCCCcEEECHHHHHHHHHhCCccEEEEecccccceeEEECCCCceEEEecCccccccccccccccCcccC
Confidence 4444444433 45899999999999999999999999876630
Q ss_pred --------hhhHHHHHHHHHhCCCCEEEeCCHHHHHHHh
Q psy16564 80 --------PAYKKLVQALCSEHQIPLIKVDNNKKLGEWA 110 (157)
Q Consensus 80 --------~~~~~~l~~lc~~~~Ipvi~v~sk~eLG~a~ 110 (157)
..+...|...++++|..+.++.+.-+-|.-+
T Consensus 371 ~~~~~~e~~~~ve~l~e~a~~~G~~v~~vs~~~~eG~ql 409 (441)
T 3e20_C 371 AEMELVSSMLLSEWLAEHYKDYGANLEFVSDRSQEGMQF 409 (441)
T ss_dssp ------CCEEHHHHHHHHGGGGSCCEEEECTTSHHHHHH
T ss_pred ccceecchhhHHHHHHHHHHHcCCEEEEECCCCHHHHHH
Confidence 0244567788899999999999888877654
No 36
>2qi2_A Pelota, cell division protein pelota related protein; DOM34, cell cycle; 2.90A {Thermoplasma acidophilum} SCOP: b.38.4.1 c.55.4.2 d.79.3.2
Probab=91.34 E-value=0.39 Score=40.70 Aligned_cols=71 Identities=11% Similarity=0.089 Sum_probs=54.0
Q ss_pred HHHHHHHHHHhcCCceeeHHHHHHHHhcCCeeEEEEcCCCC-chhhHHHHHHHHHhCCCCEEEeCCHHHHHHHh
Q psy16564 38 ALQQVLKTARAHDGLAKGLHEAAKALDRREAQLCVLADNCD-EPAYKKLVQALCSEHQIPLIKVDNNKKLGEWA 110 (157)
Q Consensus 38 ~L~~lL~~A~~agklv~G~~~v~KaL~kgkakLVIlA~D~s-~~~~~~~l~~lc~~~~Ipvi~v~sk~eLG~a~ 110 (157)
++.+++....+ ++.+.|.++|.+|++.|.+..++|..|-. ..+ ...|...++++|-.+.++++.-+-|.-+
T Consensus 253 ~l~~f~~~l~~-d~~~YG~~eV~~Ale~GAVetLlV~d~l~rr~~-~~~L~e~~~~~G~~V~ivs~~~e~G~qL 324 (347)
T 2qi2_A 253 IVDEFLVAVKK-DMGVYGRDQTESALQMGALSDLIITDEMFRTED-GRRSLSIAQTVGTRIHIVSVSNDPGQIV 324 (347)
T ss_dssp HHHHHHHHHHT-TCEEESHHHHHHHHHTTCEEEEEEEHHHHTSHH-HHHHHHHHHHHTCEEEEECTTSHHHHHH
T ss_pred HHHHHHHHHhc-CCEEEcHHHHHHHHHcCCCeEEEEecccccchh-HHHHHHHHHHcCCEEEEECCCCcchHHH
Confidence 34344433333 39999999999999999999999999863 223 5567888999999999999876555544
No 37
>1gz0_A Hypothetical tRNA/RRNA methyltransferase YJFH; 2'O-methyltransferase, knot, montreal- kingston bacterial structural genomics initiative, BSGI; 2.5A {Escherichia coli} SCOP: c.116.1.1 d.79.3.3
Probab=89.74 E-value=1.1 Score=36.11 Aligned_cols=61 Identities=11% Similarity=0.116 Sum_probs=47.3
Q ss_pred CceeeHHHHHHHHhcC--CeeEEEEcCCCCchhhHHHHHHHHHhCCCCEEEeCCHHHHHHHhCCC
Q psy16564 51 GLAKGLHEAAKALDRR--EAQLCVLADNCDEPAYKKLVQALCSEHQIPLIKVDNNKKLGEWAGLS 113 (157)
Q Consensus 51 klv~G~~~v~KaL~kg--kakLVIlA~D~s~~~~~~~l~~lc~~~~Ipvi~v~sk~eLG~a~G~~ 113 (157)
.++.|.+.+..+|+.+ .+.-+++..+..... ...+..+|+..++|+..++ .+.|.++.+..
T Consensus 13 ~~veG~~~V~eal~~~~~~i~~l~~~~~~~~~~-~~~l~~~~~~~~i~v~~v~-~~~l~~ls~~~ 75 (253)
T 1gz0_A 13 EMIYGIHAVQALLERAPERFQEVFILKGREDKR-LLPLIHALESQGVVIQLAN-RQYLDEKSDGA 75 (253)
T ss_dssp EEEESHHHHHHHHHSCGGGEEEEEEESSCCCTT-THHHHHHHHHHTCEEEEEC-SHHHHHTTTSC
T ss_pred EEEEEHHHHHHHHhcCCCCeEEEEEECCccchh-HHHHHHHHHHCCCcEEEeC-HHHHHHHhCCC
Confidence 4789999999999987 588888888765522 3456667888899997776 57888888753
No 38
>3nk6_A 23S rRNA methyltransferase; nosiheptide, nosiheptide-resistance methyltransferase, 23S R methyltransferase; 2.00A {Streptomyces actuosus} PDB: 3nk7_A* 3gyq_A*
Probab=89.45 E-value=1.3 Score=36.30 Aligned_cols=57 Identities=9% Similarity=0.100 Sum_probs=45.4
Q ss_pred ceeeHHHHHHHHhcC-CeeEEEEcCCCCchhhHHHHHHHHHhCCCCEEEeCCHHHHHHHhCC
Q psy16564 52 LAKGLHEAAKALDRR-EAQLCVLADNCDEPAYKKLVQALCSEHQIPLIKVDNNKKLGEWAGL 112 (157)
Q Consensus 52 lv~G~~~v~KaL~kg-kakLVIlA~D~s~~~~~~~l~~lc~~~~Ipvi~v~sk~eLG~a~G~ 112 (157)
++.|.+.+..+|+.+ .+.-|++..+... . ..+...|...++|++.+ +...|.++.+.
T Consensus 36 lveG~~~V~eaL~~~~~i~~l~~~~~~~~-~--~~l~~~~~~~~~~v~~v-~~~~l~~ls~~ 93 (277)
T 3nk6_A 36 LIEDTEPLMECIRAGVQFIEVYGSSGTPL-D--PALLDLCRQREIPVRLI-DVSIVNQLFKA 93 (277)
T ss_dssp EEESHHHHHHHHHTTCCEEEEEEETTSCC-C--HHHHHHHHHTTCCEEEE-CHHHHTTCC--
T ss_pred EEEeHHHHHHHHhCCCCeEEEEEeCCccC-c--HHHHHHHHhcCCcEEEE-CHHHHHHhhCC
Confidence 789999999999987 5788889888766 3 45667788899999887 57788888774
No 39
>3agj_B Protein pelota homolog; GTP binding, translation-hydrolase complex; HET: GTP; 2.30A {Aeropyrum pernix}
Probab=88.95 E-value=0.92 Score=38.40 Aligned_cols=73 Identities=16% Similarity=0.163 Sum_probs=53.7
Q ss_pred HHHHHHHHH-HhcCCceeeHHHHHHHHhcCCeeEEEEcCCC----Cc--hhhHHHHHHHHHhCCCCEEEeCCHHHHHHHh
Q psy16564 38 ALQQVLKTA-RAHDGLAKGLHEAAKALDRREAQLCVLADNC----DE--PAYKKLVQALCSEHQIPLIKVDNNKKLGEWA 110 (157)
Q Consensus 38 ~L~~lL~~A-~~agklv~G~~~v~KaL~kgkakLVIlA~D~----s~--~~~~~~l~~lc~~~~Ipvi~v~sk~eLG~a~ 110 (157)
.+.++.... +..|+.+.|..+|.+|++.|.+.-++|..|. ++ ......|...++++|-.++.+++..+-|.-+
T Consensus 258 ll~~f~~~l~~d~g~a~yG~~eV~~Al~~GAVetLLV~d~l~r~~d~~~r~~~~~L~~~a~~~Gg~V~ivs~~~~~G~qL 337 (358)
T 3agj_B 258 VLEEFLRRIAKSRDTVAYTPGEVLAVARMGAVDTVLLVDTLLHSPDDAVREAVDEALRLVESMGGRVIIIPGDSPAGERL 337 (358)
T ss_dssp HHHHHHHHHHHCGGGEEESHHHHHHHHHHTCEEEEEEEHHHHTCSSHHHHHHHHHHHHHHHHTTCEEEEECSSSHHHHHH
T ss_pred HHHHHHHHHhcCCCcEEECHHHHHHHHHhCCceEEEEecccccCCChhhHHHHHHHHHHHHHcCCEEEEECCCCcchhhh
Confidence 344444333 4458999999999999999999999998862 11 1224566777888999999999887777544
No 40
>3obw_A Protein pelota homolog; SM fold, hydrolase; 2.60A {Sulfolobus solfataricus}
Probab=88.02 E-value=1.1 Score=38.19 Aligned_cols=71 Identities=7% Similarity=0.066 Sum_probs=52.7
Q ss_pred HHHHHHHHHHh-cCCceeeHHHHHHHHhcCCeeEEEEcCCCCc-----hhhHHHHHHHHHhCCCCEEEeCCHHHHHH
Q psy16564 38 ALQQVLKTARA-HDGLAKGLHEAAKALDRREAQLCVLADNCDE-----PAYKKLVQALCSEHQIPLIKVDNNKKLGE 108 (157)
Q Consensus 38 ~L~~lL~~A~~-agklv~G~~~v~KaL~kgkakLVIlA~D~s~-----~~~~~~l~~lc~~~~Ipvi~v~sk~eLG~ 108 (157)
.+.+++....+ .|+.+.|.++|.+|++.|.+.-++|..|..- ......|...++++|-.+.++.+.-+-|.
T Consensus 271 lle~f~~~l~~d~g~a~yG~~eV~~Ale~GAVetLLV~d~l~r~~d~~r~~~~~l~e~v~~~Gg~V~ivs~~~e~G~ 347 (364)
T 3obw_A 271 KMEKAMELLAKQPELVTYGLEQVKNAIEMGAVETVLVIEDLLSSDEQERLTIERMLEDIENKRGEVILVPKESPIYF 347 (364)
T ss_dssp HHHHHHHHHTTSCSSEEESHHHHHHHHHHTCEEEEEEEGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEECTTSTTHH
T ss_pred HHHHHHHHHhcCCCcEEECHHHHHHHHHhCCCcEEEEeccCcccccchHHHHHHHHHHHHhcCCEEEEECCCCCCch
Confidence 33444444433 5899999999999999999999999987432 12455677788899999999997654443
No 41
>2vgn_A DOM34; translation termination factor, protein biosynthesis, translation regulation, cell division, mRNA degradation; 2.5A {Saccharomyces cerevisiae} SCOP: b.38.4.1 c.55.4.2 d.79.3.2 PDB: 2vgm_A 3izq_0 3j16_A*
Probab=87.03 E-value=2.8 Score=35.81 Aligned_cols=73 Identities=16% Similarity=0.095 Sum_probs=53.5
Q ss_pred HHHHHHHH-HHhcCCceeeHHHHHHHHhcCCeeEEEEcCCCC---chhh---HHHHHHHHHhCCCCEEEeCCHHHHHHHh
Q psy16564 38 ALQQVLKT-ARAHDGLAKGLHEAAKALDRREAQLCVLADNCD---EPAY---KKLVQALCSEHQIPLIKVDNNKKLGEWA 110 (157)
Q Consensus 38 ~L~~lL~~-A~~agklv~G~~~v~KaL~kgkakLVIlA~D~s---~~~~---~~~l~~lc~~~~Ipvi~v~sk~eLG~a~ 110 (157)
++.++... ++..|+.+.|..+|.+|++.|.+..++|..|.- .... ...|...++++|-.+.++.+.-+-|.-+
T Consensus 283 ~l~~f~~~l~~d~~~a~yG~~eV~~Ale~GAVetLLV~d~l~r~~d~~~r~~v~~L~e~v~~~Gg~V~ivs~~~e~G~qL 362 (386)
T 2vgn_A 283 VMDEFLLHLNKDDDKAWYGEKEVVKAAEYGAISYLLLTDKVLHSDNIAQREEYLKLMDSVESNGGKALVLSTLHSLGEEL 362 (386)
T ss_dssp HHHHHHHHHTTTCSSEEESHHHHHHHHHTTCEEEEEEETTGGGSSCHHHHHHHHHHHHHHHHTTCEEEEECTTSHHHHHH
T ss_pred HHHHHHHHHhcCCCcEEeCHHHHHHHHHcCCcEEEEEechhhcCCCchhhhHHHHHHHHHHHcCCEEEEECCCCcchhhH
Confidence 44444433 344589999999999999999999999999831 1011 3456667888999999999876666444
No 42
>1b93_A Protein (methylglyoxal synthase); glycolytic bypass, lyase; 1.90A {Escherichia coli} SCOP: c.24.1.2 PDB: 1egh_A 1ik4_A* 1s8a_A 1s89_A
Probab=85.63 E-value=1.8 Score=32.79 Aligned_cols=45 Identities=11% Similarity=0.144 Sum_probs=37.4
Q ss_pred eHHHHHHHHhcCCeeEEEEcCC---CCc-hhhHHHHHHHHHhCCCCEEE
Q psy16564 55 GLHEAAKALDRREAQLCVLADN---CDE-PAYKKLVQALCSEHQIPLIK 99 (157)
Q Consensus 55 G~~~v~KaL~kgkakLVIlA~D---~s~-~~~~~~l~~lc~~~~Ipvi~ 99 (157)
|..++...|+.|++.|||--.| ..+ ..-...|...|-.++||+.+
T Consensus 70 G~p~I~d~I~~geIdlVInt~~pl~~~~h~~D~~~IrR~A~~~~IP~~T 118 (152)
T 1b93_A 70 GDQQVGALISEGKIDVLIFFWDPLNAVPHDPDVKALLRLATVWNIPVAT 118 (152)
T ss_dssp HHHHHHHHHHTTCCCEEEEECCTTSCCTTHHHHHHHHHHHHHTTCCEES
T ss_pred CCchHHHHHHCCCccEEEEcCCcccCCcccccHHHHHHHHHHcCCCEEe
Confidence 7889999999999999999888 333 23456789999999999975
No 43
>3mca_B Protein DOM34, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=85.02 E-value=2.7 Score=36.06 Aligned_cols=73 Identities=14% Similarity=0.091 Sum_probs=52.5
Q ss_pred HHHHHHHHHH-hcCCceeeHHHHHHHHhcCCeeEEEEcCCCC---chhhHH---HHHHHHHhCCCCEEEeCCHHHHHHHh
Q psy16564 38 ALQQVLKTAR-AHDGLAKGLHEAAKALDRREAQLCVLADNCD---EPAYKK---LVQALCSEHQIPLIKVDNNKKLGEWA 110 (157)
Q Consensus 38 ~L~~lL~~A~-~agklv~G~~~v~KaL~kgkakLVIlA~D~s---~~~~~~---~l~~lc~~~~Ipvi~v~sk~eLG~a~ 110 (157)
.+.+++.... ..|+.+.|.++|.+|++.|.+.-++|..+.- .....+ .|...++++|-.++.+.+.-+-|.-+
T Consensus 277 lle~f~~~l~~d~g~a~YG~~eV~~Ale~GAVetLLI~d~l~r~~d~~~r~~~~~L~e~~~~~Gg~V~ivs~~~~~G~qL 356 (390)
T 3mca_B 277 VLNKFYDVMNEDDRKAWYGPNHVLKAFELGAIGELLISDSLFRSSDIATRKKWVSLVEGVKEINCPVYIFSSLHESGKQL 356 (390)
T ss_dssp HHHHHHHHHHHCTTSEEESHHHHHHHHHTTCBSSCEEEETTCCCSCHHHHHHHHHHHHHHHHTTCCEEEECTTSHHHHHH
T ss_pred HHHHHHHHHhcCCCcEEECHHHHHHHHHcCCCeEEEEecccccCCChhHHHHHHHHHHHHHhcCCEEEEECCCCCchhhh
Confidence 4445554443 4599999999999999999999999987632 111111 45666889999999999875555544
No 44
>1dt9_A ERF1, protein (eukaryotic peptide chain release factor subunit 1); tRNA mimicry, protein sythesis, STOP codon recognition, peptidyl-tRNA hydrolysis; 2.70A {Homo sapiens} SCOP: c.55.4.2 d.79.3.2 d.91.1.1 PDB: 3e1y_A* 2ktu_A 2ktv_A 2lgt_A 2hst_A
Probab=84.42 E-value=2.8 Score=36.13 Aligned_cols=63 Identities=14% Similarity=0.188 Sum_probs=48.9
Q ss_pred HhcCCceeeHHHHHHHHhcCCeeEEEEcCCCC--------c-----------------------------------hhhH
Q psy16564 47 RAHDGLAKGLHEAAKALDRREAQLCVLADNCD--------E-----------------------------------PAYK 83 (157)
Q Consensus 47 ~~agklv~G~~~v~KaL~kgkakLVIlA~D~s--------~-----------------------------------~~~~ 83 (157)
+..|+.+.|..+|.+|++.|.+..++|..|.. + .++.
T Consensus 296 ~d~g~a~yG~~eV~~Al~~GaVetLLv~d~l~~~r~~~r~~~~g~~~~~~~~~~~~~~r~~~~~~~~g~~~~~~~~~d~v 375 (437)
T 1dt9_A 296 QDTGKYCFGVEDTLKALEMGAVEILIVYENLDIMRYVLHCQGTEEEKILYLTPEQEKDKSHFTDKETGQEHELIESMPLL 375 (437)
T ss_dssp SSSCCEEESHHHHHHHHHSSCCSEEEEESCCCCBCCCC---------CCCBCTTCSSCCCCCC-----------CCCBHH
T ss_pred cCCCcEEecHHHHHHHHHhCCccEEEEecCcccceEEEEcCCCCceeeeeeccccccccccccCcccCccccccccccHH
Confidence 33589999999999999999999999888754 1 0123
Q ss_pred HHHHHHHHhCCCCEEEeCCHHHHHHH
Q psy16564 84 KLVQALCSEHQIPLIKVDNNKKLGEW 109 (157)
Q Consensus 84 ~~l~~lc~~~~Ipvi~v~sk~eLG~a 109 (157)
..|...++++|-.+.++.+.-+-|.-
T Consensus 376 e~L~e~~~~~G~~V~ivs~~~e~G~q 401 (437)
T 1dt9_A 376 EWFANNYKKFGATLEIVTDKSQEGSQ 401 (437)
T ss_dssp HHHHHTCTTTTSCEEEECSSSHHHHH
T ss_pred HHHHHHHHHcCCEEEEECCCChhHHH
Confidence 34666778899999999988777754
No 45
>2xw6_A MGS, methylglyoxal synthase; lyase; 1.08A {Thermus SP} PDB: 2x8w_A 1wo8_A
Probab=84.27 E-value=1.2 Score=33.06 Aligned_cols=48 Identities=10% Similarity=0.193 Sum_probs=38.0
Q ss_pred eeHHHHHHHHhcCCeeEEEEcCC--CC-c-hhhHHHHHHHHHhCCCCEEEeC
Q psy16564 54 KGLHEAAKALDRREAQLCVLADN--CD-E-PAYKKLVQALCSEHQIPLIKVD 101 (157)
Q Consensus 54 ~G~~~v~KaL~kgkakLVIlA~D--~s-~-~~~~~~l~~lc~~~~Ipvi~v~ 101 (157)
-|..++...|+.|++.|||--.| .. + ..-...|...|-.++||+.+--
T Consensus 61 eG~p~I~d~I~~geIdlVInt~~pl~~~~h~~D~~~IrR~A~~~~IP~~T~l 112 (134)
T 2xw6_A 61 GGDQQMGARVAEGRILAVIFFRDPLTAQPHEPDVQALLRVCDVHGVPLATNP 112 (134)
T ss_dssp THHHHHHHHHHTTCEEEEEEECCTTTCCTTSCCSHHHHHHHHHHTCCEECSH
T ss_pred CCcchHHHHHHCCCccEEEEccCcccCCCccchHHHHHHHHHHcCCCeEcCH
Confidence 57889999999999999999888 22 2 1234568999999999998633
No 46
>1ipa_A RRMH, RNA 2'-O-ribose methyltransferase; DEEP trefoil knot, rossmann fold, EL30-like fold, riken structural genomics/proteomics initiative; 2.40A {Thermus thermophilus} SCOP: c.116.1.1 d.79.3.3
Probab=83.27 E-value=3.7 Score=33.40 Aligned_cols=61 Identities=18% Similarity=0.158 Sum_probs=42.4
Q ss_pred CceeeHHHHHHHHhcC-CeeEEEEcCCCCchhhHHHHHHHHHhCC-CCEEEeCCHHHHHHHhCCC
Q psy16564 51 GLAKGLHEAAKALDRR-EAQLCVLADNCDEPAYKKLVQALCSEHQ-IPLIKVDNNKKLGEWAGLS 113 (157)
Q Consensus 51 klv~G~~~v~KaL~kg-kakLVIlA~D~s~~~~~~~l~~lc~~~~-Ipvi~v~sk~eLG~a~G~~ 113 (157)
-++.|.+.+..+|+.+ .+.-++++.+..+ .....+...+...+ +|++.++ .+.|.++.+..
T Consensus 29 f~veG~~~v~eal~~~~~i~~l~~~~~~~~-~~~~~l~~~~~~~~~~~v~~v~-~~~l~~ls~~~ 91 (274)
T 1ipa_A 29 FLIEGAREIERALQAGIELEQALVWEGGLN-PEEQQVYAALGRVGRLALLEVS-EAVLKKLSVRD 91 (274)
T ss_dssp EEEESHHHHHHHHHTTCCEEEEEEETTCCC-HHHHHHHHCC-----CEEEEEC-HHHHHHHCCSS
T ss_pred EEEEeHHHHHHHHhCCCCeEEEEEEcCccc-chHHHHHHHHHhcCCccEEEeC-HHHHHHHhCCC
Confidence 4678999999999987 5888888888765 22334555666678 8886655 78899988853
No 47
>1vmd_A MGS, methylglyoxal synthase; TM1185, structural genomics, JCSG, P structure initiative, PSI, joint center for structural GENO lyase; 2.06A {Thermotoga maritima} SCOP: c.24.1.2
Probab=82.64 E-value=2.1 Score=33.33 Aligned_cols=77 Identities=8% Similarity=-0.019 Sum_probs=51.8
Q ss_pred eHHHHHHHHhcCCeeEEEEcCC---CCc-hhhHHHHHHHHHhCCCCEEEeC-CHHHHHHHhCCCccccCCCccceeeeEE
Q psy16564 55 GLHEAAKALDRREAQLCVLADN---CDE-PAYKKLVQALCSEHQIPLIKVD-NNKKLGEWAGLSKLDNMGKARKVVGCSC 129 (157)
Q Consensus 55 G~~~v~KaL~kgkakLVIlA~D---~s~-~~~~~~l~~lc~~~~Ipvi~v~-sk~eLG~a~G~~~~~~~gk~rki~~~s~ 129 (157)
|..++...|+.|++.|||--.| ..+ ..-...|...|-.++||+.+-- +-+.+=+++=.. ..
T Consensus 86 G~pqI~d~I~~geIdlVInt~dPl~~~~h~~D~~~IRR~A~~~~IP~~TnlatA~A~v~ail~~------~~-------- 151 (178)
T 1vmd_A 86 GDQQIGAMIAEGKIDVLIFFWDPLEPQAHDVDVKALIRIATVYNIPVAITRSTADFLISSPLMN------DV-------- 151 (178)
T ss_dssp HHHHHHHHHHTTSCCEEEEECCSSSCCTTSCCHHHHHHHHHHTTCCEESSHHHHHHHHHSGGGG------SC--------
T ss_pred CCchHHHHHHCCCccEEEEccCccCCCcccccHHHHHHHHHHcCCCEEeCHHHHHHHHHHHhcc------cc--------
Confidence 7889999999999999999888 222 1344578999999999998633 333333332221 01
Q ss_pred EEEecCchhHHhhhcc
Q psy16564 130 VVIKVRNWFLIICSRK 145 (157)
Q Consensus 130 vaI~D~g~~~~~~~~~ 145 (157)
+-..++.|.+.+..+.
T Consensus 152 ~~~~~~d~~~~~~~~~ 167 (178)
T 1vmd_A 152 YEKIQIDYEEELERRI 167 (178)
T ss_dssp EEEEEECHHHHHHHHH
T ss_pred cccCCCCHHHHHHHHH
Confidence 3356677777766654
No 48
>3nkl_A UDP-D-quinovosamine 4-dehydrogenase; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; HET: MSE GOL; 1.90A {Vibrio fischeri}
Probab=80.17 E-value=2.7 Score=29.43 Aligned_cols=55 Identities=11% Similarity=0.111 Sum_probs=41.7
Q ss_pred ceeeHHHHHHHHhcCCeeEEEEcCCCCchhhHHHHHHHHHhCCCCEEEeCCHHHH
Q psy16564 52 LAKGLHEAAKALDRREAQLCVLADNCDEPAYKKLVQALCSEHQIPLIKVDNNKKL 106 (157)
Q Consensus 52 lv~G~~~v~KaL~kgkakLVIlA~D~s~~~~~~~l~~lc~~~~Ipvi~v~sk~eL 106 (157)
-+.|..+..+.+++..+..||+|-..........+...|...++.+..+++-.++
T Consensus 50 pV~g~~~l~~~~~~~~id~viia~~~~~~~~~~~i~~~l~~~gv~v~~vP~~~~~ 104 (141)
T 3nkl_A 50 TIYRPKYLERLIKKHCISTVLLAVPSASQVQKKVIIESLAKLHVEVLTIPNLDDL 104 (141)
T ss_dssp EEECGGGHHHHHHHHTCCEEEECCTTSCHHHHHHHHHHHHTTTCEEEECCCHHHH
T ss_pred EEECHHHHHHHHHHCCCCEEEEeCCCCCHHHHHHHHHHHHHcCCeEEECCCHHHH
Confidence 3456566667777778889999976444356677888999999999999987664
No 49
>2ohw_A YUEI protein; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics, nysgxrc; 1.40A {Bacillus subtilis} SCOP: d.79.8.1
Probab=74.28 E-value=10 Score=27.87 Aligned_cols=45 Identities=13% Similarity=0.132 Sum_probs=40.7
Q ss_pred HHHHHHHhcCCeeEEEEcCCCCchhhHHHHHHHHHhCCCCEEEeCC
Q psy16564 57 HEAAKALDRREAQLCVLADNCDEPAYKKLVQALCSEHQIPLIKVDN 102 (157)
Q Consensus 57 ~~v~KaL~kgkakLVIlA~D~s~~~~~~~l~~lc~~~~Ipvi~v~s 102 (157)
.+..++|++.....++|-.+.+. .....+..+|.++|+|.-.+.+
T Consensus 53 ~~~~~~l~~~~~~~l~ing~l~~-~~~~~YiklA~~~~i~fTiV~~ 97 (133)
T 2ohw_A 53 KEAEHELKNSHNVTLLINGELQY-QSYSSYIQMASRYGVPFKIVSD 97 (133)
T ss_dssp HHHHHHHHTCSSEEEEEETTSCH-HHHHHHHHHHHHTTCCEEEECC
T ss_pred HHHHHHHhhCCCcEEEEcCCCCH-HHHHHHHHHHHHcCCCeEEecC
Confidence 45577999999999999999999 7888999999999999999987
No 50
>2yvq_A Carbamoyl-phosphate synthase; conserved hypothetical protein, structural genomics, NPPSFA; 1.98A {Homo sapiens}
Probab=72.81 E-value=3.7 Score=30.07 Aligned_cols=43 Identities=14% Similarity=0.172 Sum_probs=33.3
Q ss_pred HHHHHHHhcCCeeEEEEcCCCC--chhhHHHHHHHHHhCCCCEEE
Q psy16564 57 HEAAKALDRREAQLCVLADNCD--EPAYKKLVQALCSEHQIPLIK 99 (157)
Q Consensus 57 ~~v~KaL~kgkakLVIlA~D~s--~~~~~~~l~~lc~~~~Ipvi~ 99 (157)
.++...|++|++.|||--.|-. +..--..+...|-+++||+++
T Consensus 86 ~~i~d~i~~g~i~lVInt~~~~~~~~~d~~~iRR~Av~~~IP~~T 130 (143)
T 2yvq_A 86 SSIRKLIRDGSIDLVINLPNNNTKFVHDNYVIRRTAVDSGIPLLT 130 (143)
T ss_dssp BCHHHHHHTTSCCEEEECCCCCGGGHHHHHHHHHHHHHTTCCEEC
T ss_pred ccHHHHHHCCCceEEEECCCCCCcCCccHHHHHHHHHHhCCCeEc
Confidence 4678889999999999987762 212345688999999999975
No 51
>2l82_A Designed protein OR32; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=66.99 E-value=17 Score=26.78 Aligned_cols=53 Identities=13% Similarity=0.311 Sum_probs=42.5
Q ss_pred HHHHHHHhcCCeeEEEEcCCCCchhhHHHHHHHHHhCCCCEEEeCCHHHHHHHh
Q psy16564 57 HEAAKALDRREAQLCVLADNCDEPAYKKLVQALCSEHQIPLIKVDNNKKLGEWA 110 (157)
Q Consensus 57 ~~v~KaL~kgkakLVIlA~D~s~~~~~~~l~~lc~~~~Ipvi~v~sk~eLG~a~ 110 (157)
++..+.|++.-++.|++-+|-++..-...++.+ ++.|+.+-.++++++.-.-+
T Consensus 16 keivreikrqgvrvvllysdqdekrrrerleef-ekqgvdvrtvedkedfreni 68 (162)
T 2l82_A 16 KEIVREIKRQGVRVVLLYSDQDEKRRRERLEEF-EKQGVDVRTVEDKEDFRENI 68 (162)
T ss_dssp HHHHHHHHHTTCEEEEEECCSCHHHHHHHHHHH-HTTTCEEEECCSHHHHHHHH
T ss_pred HHHHHHHHhCCeEEEEEecCchHHHHHHHHHHH-HHcCCceeeeccHHHHHHHH
Confidence 455677888889999999999997666776665 55699999999999876554
No 52
>2ioj_A Hypothetical protein AF_1212; NYSGXRC, PFAM:DRTGG, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.15A {Archaeoglobus fulgidus} SCOP: c.98.2.2
Probab=63.83 E-value=23 Score=25.05 Aligned_cols=77 Identities=21% Similarity=0.222 Sum_probs=46.2
Q ss_pred CCCCcccHHHHHHHHHHHHHhcC--Ccee-eHHHH--HHHHhcCCeeEEEEcCCCCchhhHHHHHHHHHhCCCCEEEeC-
Q psy16564 28 NDEGVSDINKALQQVLKTARAHD--GLAK-GLHEA--AKALDRREAQLCVLADNCDEPAYKKLVQALCSEHQIPLIKVD- 101 (157)
Q Consensus 28 ~~~~~m~~~k~L~~lL~~A~~ag--klv~-G~~~v--~KaL~kgkakLVIlA~D~s~~~~~~~l~~lc~~~~Ipvi~v~- 101 (157)
+.-+-|.+...+ +.+ .... -++. |.++- +.++..-.+..+|++.+..|. ..+..+|++++||++..+
T Consensus 34 i~~~a~~~~~~~-~~~---~~~~~~l~I~~G~r~~~~l~a~~~~~~~~iIlt~g~~~~---~~i~~~A~~~~ipvl~t~~ 106 (139)
T 2ioj_A 34 VVIGAMSPQSAL-RYL---REARNAALVTGGDRSDLLLTALEMPNVRCLILTGNLEPV---QLVLTKAEERGVPVILTGH 106 (139)
T ss_dssp EEECSSCHHHHH-HHH---HTCSSEEEEEETTCHHHHHHHTTCTTEEEEEEETTCCCC---HHHHHHHHHHTCCEEECSS
T ss_pred EEEEeCCHHHHH-HHH---hcCCCEEEEEcCCHHHHHHHHHhCCCCcEEEEcCCCCCC---HHHHHHHHHCCCeEEEECC
Confidence 334456666555 333 2222 3555 66543 344441458889999987663 235588999999999988
Q ss_pred CHHHHHHHhC
Q psy16564 102 NNKKLGEWAG 111 (157)
Q Consensus 102 sk~eLG~a~G 111 (157)
+.-+....+.
T Consensus 107 ~T~~~~~~l~ 116 (139)
T 2ioj_A 107 DTLTAVSRLE 116 (139)
T ss_dssp CHHHHHHHHH
T ss_pred CHHHHHHHHH
Confidence 5555444443
No 53
>3tsm_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, ssgcid, seattle structural GE center for infectious disease, lyase; 2.15A {Brucella melitensis} SCOP: c.1.2.0
Probab=55.34 E-value=54 Score=26.57 Aligned_cols=69 Identities=13% Similarity=0.128 Sum_probs=51.8
Q ss_pred eeHHHHHHHHhcCCeeEEEEcCCCCchhhHHHHHHHHHhCCCC-EEEeCCHHHHHHHhCCCccccCCCccceeeeEEEEE
Q psy16564 54 KGLHEAAKALDRREAQLCVLADNCDEPAYKKLVQALCSEHQIP-LIKVDNNKKLGEWAGLSKLDNMGKARKVVGCSCVVI 132 (157)
Q Consensus 54 ~G~~~v~KaL~kgkakLVIlA~D~s~~~~~~~l~~lc~~~~Ip-vi~v~sk~eLG~a~G~~~~~~~gk~rki~~~s~vaI 132 (157)
.=..|+..+...|--..++++.+.++ .....+..+|++.|.. ++.+.+.+||-++.-. ++..++|
T Consensus 130 ~d~~qi~ea~~~GAD~VlLi~a~L~~-~~l~~l~~~a~~lGl~~lvevh~~eEl~~A~~~-------------ga~iIGi 195 (272)
T 3tsm_A 130 FDPYQVYEARSWGADCILIIMASVDD-DLAKELEDTAFALGMDALIEVHDEAEMERALKL-------------SSRLLGV 195 (272)
T ss_dssp CSTHHHHHHHHTTCSEEEEETTTSCH-HHHHHHHHHHHHTTCEEEEEECSHHHHHHHTTS-------------CCSEEEE
T ss_pred CCHHHHHHHHHcCCCEEEEcccccCH-HHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHhc-------------CCCEEEE
Confidence 33457888888898888888888887 5556677889999985 4558899999998863 2346788
Q ss_pred ecCc
Q psy16564 133 KVRN 136 (157)
Q Consensus 133 ~D~g 136 (157)
.+.+
T Consensus 196 nnr~ 199 (272)
T 3tsm_A 196 NNRN 199 (272)
T ss_dssp ECBC
T ss_pred CCCC
Confidence 7554
No 54
>1jdq_A TM006 protein, hypothetical protein TM0983; structural genomics; NMR {Thermotoga maritima} SCOP: d.68.3.3
Probab=49.00 E-value=33 Score=23.50 Aligned_cols=40 Identities=20% Similarity=0.220 Sum_probs=27.9
Q ss_pred HHHHHHhc---CCeeEEEEcCCCCchhhHHHHHHHHHhCCCCEEEeC
Q psy16564 58 EAAKALDR---REAQLCVLADNCDEPAYKKLVQALCSEHQIPLIKVD 101 (157)
Q Consensus 58 ~v~KaL~k---gkakLVIlA~D~s~~~~~~~l~~lc~~~~Ipvi~v~ 101 (157)
.+.++|++ |+ .|.|++.|... ...|+.+|++.|-.+....
T Consensus 42 ~tkkaL~~l~~Ge-~L~Vl~dd~~a---~~dI~~~~~~~G~~v~~~e 84 (98)
T 1jdq_A 42 ETKRALQNMKPGE-ILEVWIDYPMS---KERIPETVKKLGHEVLEIE 84 (98)
T ss_dssp HHHHHHHTCCTTC-EEEEEESSCTH---HHHHHHHHHHSSCCEEEEE
T ss_pred HHHHHHHhCCCCC-EEEEEECCccH---HHHHHHHHHHCCCEEEEEE
Confidence 34455554 43 47788888654 4578999999998887654
No 55
>3f6p_A Transcriptional regulatory protein YYCF; unphosphorelated, receiver domain, cytoplasm, DNA-binding, phosphoprotein, transcription regulation; 1.95A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 2zwm_A
Probab=48.81 E-value=39 Score=21.93 Aligned_cols=64 Identities=16% Similarity=0.173 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHHhcCCc---eeeHHHHHHHHhcCCeeEEEEcCCCCchhhHHHHHHHHHhCCCCEEEeC
Q psy16564 35 INKALQQVLKTARAHDGL---AKGLHEAAKALDRREAQLCVLADNCDEPAYKKLVQALCSEHQIPLIKVD 101 (157)
Q Consensus 35 ~~k~L~~lL~~A~~agkl---v~G~~~v~KaL~kgkakLVIlA~D~s~~~~~~~l~~lc~~~~Ipvi~v~ 101 (157)
....+..+|.. .|.- .....++++.++.....+||+--+-+..+-...+..+-+..++|++.+.
T Consensus 14 ~~~~l~~~L~~---~g~~v~~~~~~~~al~~~~~~~~dlii~D~~~p~~~g~~~~~~lr~~~~~~ii~~t 80 (120)
T 3f6p_A 14 IADILEFNLRK---EGYEVHCAHDGNEAVEMVEELQPDLILLDIMLPNKDGVEVCREVRKKYDMPIIMLT 80 (120)
T ss_dssp HHHHHHHHHHH---TTCEEEEESSHHHHHHHHHTTCCSEEEEETTSTTTHHHHHHHHHHTTCCSCEEEEE
T ss_pred HHHHHHHHHHh---CCEEEEEeCCHHHHHHHHhhCCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCEEEEE
Confidence 44555555543 3432 2345677888888889999997776654444555555556789998875
No 56
>2lqo_A Putative glutaredoxin RV3198.1/MT3292; TRX fold, oxidoreductase; NMR {Mycobacterium tuberculosis}
Probab=48.75 E-value=45 Score=22.28 Aligned_cols=19 Identities=16% Similarity=0.144 Sum_probs=9.9
Q ss_pred HHHHHHHHHhCCCCEEEeC
Q psy16564 83 KKLVQALCSEHQIPLIKVD 101 (157)
Q Consensus 83 ~~~l~~lc~~~~Ipvi~v~ 101 (157)
......+-++++||+..++
T Consensus 17 C~~aK~~L~~~gi~y~~id 35 (92)
T 2lqo_A 17 CLRLKTALTANRIAYDEVD 35 (92)
T ss_dssp HHHHHHHHHHTTCCCEEEE
T ss_pred HHHHHHHHHhcCCceEEEE
Confidence 3444455555566655543
No 57
>2ggt_A SCO1 protein homolog, mitochondrial; copper chaperone, Cu-binding protein, mitochondrial assembly factor, redox, nickel, disuplhide, mitochondrion; 2.40A {Homo sapiens} SCOP: c.47.1.10 PDB: 2gqk_A 2gql_A 2gqm_A 2gt5_A 2gt6_A 2gvp_A 2hrf_A 2hrn_A 1wp0_A
Probab=46.90 E-value=66 Score=21.93 Aligned_cols=47 Identities=6% Similarity=0.054 Sum_probs=33.4
Q ss_pred CCeeEEEEcCCCCchhhHHHHHHHHHhCCCCEEEeC-C---HHHHHHHhCCC
Q psy16564 66 REAQLCVLADNCDEPAYKKLVQALCSEHQIPLIKVD-N---NKKLGEWAGLS 113 (157)
Q Consensus 66 gkakLVIlA~D~s~~~~~~~l~~lc~~~~Ipvi~v~-s---k~eLG~a~G~~ 113 (157)
..+.+|.|..|-.. +....+..+++++++++..+. + ..++.+..|..
T Consensus 60 ~~~~vv~vs~d~~~-d~~~~~~~~~~~~~~~~~~l~~~~d~~~~~~~~~~v~ 110 (164)
T 2ggt_A 60 PDLTPLFISIDPER-DTKEAIANYVKEFSPKLVGLTGTREEVDQVARAYRVY 110 (164)
T ss_dssp CCEEEEEEESCTTT-CCHHHHHHHHHTTCSSCEEEECCHHHHHHHHHTTTCC
T ss_pred CcEEEEEEEeCCCC-CCHHHHHHHHHHcCCCeEEEeCCHHHHHHHHHhcCeE
Confidence 36888999888654 345567888999998877763 2 33577777764
No 58
>3mfq_A TROA, high-affinity zinc uptake system protein ZNUA; metal binding protein; 2.60A {Streptococcus suis} SCOP: c.92.2.0
Probab=46.48 E-value=23 Score=28.41 Aligned_cols=24 Identities=17% Similarity=0.098 Sum_probs=17.7
Q ss_pred CCchhhHHHHHHHHHhCCCCEEEeC
Q psy16564 77 CDEPAYKKLVQALCSEHQIPLIKVD 101 (157)
Q Consensus 77 ~s~~~~~~~l~~lc~~~~Ipvi~v~ 101 (157)
.++ .....+..++++++|++++++
T Consensus 196 ps~-~~l~~l~~~ik~~~v~~if~e 219 (282)
T 3mfq_A 196 VAN-SDMIETVNLIIDHNIKAIFTE 219 (282)
T ss_dssp CCH-HHHHHHHHHHHHHTCCEEECB
T ss_pred CCH-HHHHHHHHHHHHcCCCEEEEe
Confidence 445 455667788888889888876
No 59
>3bzy_B ESCU; auto cleavage protein, flagella, intein, T3SS, membrane, membrane protein, protein transport; 1.20A {Escherichia coli} SCOP: d.367.1.1 PDB: 3c00_B 3bzl_C 3bzo_B 3bzv_B 3c03_C 3bzz_B 3bzx_B
Probab=46.22 E-value=14 Score=24.96 Aligned_cols=35 Identities=20% Similarity=0.166 Sum_probs=25.0
Q ss_pred EEcCCCCchhhHHHHHHHHHhCCCCEEEeCCHHHHHHHhC
Q psy16564 72 VLADNCDEPAYKKLVQALCSEHQIPLIKVDNNKKLGEWAG 111 (157)
Q Consensus 72 IlA~D~s~~~~~~~l~~lc~~~~Ipvi~v~sk~eLG~a~G 111 (157)
++|.=.+. +...+.+.++++|||++.- ..|.+++-
T Consensus 20 VvAKG~~~--~A~~I~~~A~e~~VPi~e~---~~LAr~L~ 54 (83)
T 3bzy_B 20 VIETGKDA--KALQIIKLAELYDIPVIED---IPLARSLD 54 (83)
T ss_dssp EEEEEETH--HHHHHHHHHHHTTCCEEEC---HHHHHHHH
T ss_pred EEEEeCcH--HHHHHHHHHHHcCCCEEeC---HHHHHHHH
Confidence 35555554 7788999999999999753 44555554
No 60
>3cf4_G Acetyl-COA decarboxylase/synthase epsilon subunit; methanomicrobia, iron-nikel-sulfur, 4Fe-NI-4S, oxidoreductas; 2.00A {Methanosarcina barkeri}
Probab=45.07 E-value=51 Score=24.15 Aligned_cols=41 Identities=15% Similarity=0.264 Sum_probs=26.9
Q ss_pred HHHhcCCeeEEEEcCCCCchhhHHHHHHHHHhCCCCEEEeC
Q psy16564 61 KALDRREAQLCVLADNCDEPAYKKLVQALCSEHQIPLIKVD 101 (157)
Q Consensus 61 KaL~kgkakLVIlA~D~s~~~~~~~l~~lc~~~~Ipvi~v~ 101 (157)
+.|.+-+--++++-.-+........+.+|+++.++||+...
T Consensus 29 ~~L~~AkrPvil~G~g~~~~~a~~~l~~lae~~~iPV~~t~ 69 (170)
T 3cf4_G 29 KIISKAKRPLLMVGTLALDPELLDRVVKISKAANIPIAATG 69 (170)
T ss_dssp HHHHHCSSEEEEECSTTCCHHHHHHHHHHHHHHTCCEEECT
T ss_pred HHHHcCCCCEEEECCCccchhHHHHHHHHHHHhCCCEEECc
Confidence 33433444455554445433566789999999999998754
No 61
>1ytl_A Acetyl-COA decarboxylase/synthase complex epsilon 2; structural genomics; 1.80A {Archaeoglobus fulgidus} SCOP: c.31.1.6
Probab=43.86 E-value=23 Score=26.87 Aligned_cols=48 Identities=10% Similarity=0.158 Sum_probs=36.7
Q ss_pred CceeeHHHH-HHHHhcCCeeEEEEcCCCCchhhHHHHHHHHHhCCCCEEEeC
Q psy16564 51 GLAKGLHEA-AKALDRREAQLCVLADNCDEPAYKKLVQALCSEHQIPLIKVD 101 (157)
Q Consensus 51 klv~G~~~v-~KaL~kgkakLVIlA~D~s~~~~~~~l~~lc~~~~Ipvi~v~ 101 (157)
+++. .+++ .+.|++-+--++++-. +....-...+.+|+++ +|||+...
T Consensus 20 ~~~~-i~~a~a~lI~~AkRPvIl~Gg-v~~~~A~~eL~~~ae~-~iPVvtT~ 68 (174)
T 1ytl_A 20 TLLE-KGKPVANMIKKAKRPLLIVGP-DMTDEMFERVKKFVEK-DITVVATG 68 (174)
T ss_dssp EECC-CHHHHHHHHHHCSSEEEEECS-CCCHHHHHHHHHHHTS-SSEEEEET
T ss_pred eecc-HHHHHHHHHHcCCCCEEEECC-CCCccHHHHHHHHHHc-CCCEEEcc
Confidence 3444 6676 7888888888888888 7644556778999999 99999763
No 62
>4a29_A Engineered retro-aldol enzyme RA95.0; de novo protein, engineered enzyme, retro-aldolase, directed evolution; HET: 3NK MLT; 1.10A {Synthetic construct} PDB: 4a2s_A* 4a2r_A* 3tc7_A 3tc6_A 3nl8_A* 3nxf_A* 3o6y_X 3ud6_A* 1igs_A 1juk_A 1jul_A* 3hoj_A 1a53_A* 1lbf_A* 1lbl_A* 3nyz_A 3nz1_A* 3uy7_A 3uxd_A* 3uxa_A* ...
Probab=41.64 E-value=81 Score=25.67 Aligned_cols=73 Identities=11% Similarity=0.137 Sum_probs=54.2
Q ss_pred CceeeHHHHHHHHhcCCeeEEEEcCCCCchhhHHHHHHHHHhCCC-CEEEeCCHHHHHHHhCCCccccCCCccceeeeEE
Q psy16564 51 GLAKGLHEAAKALDRREAQLCVLADNCDEPAYKKLVQALCSEHQI-PLIKVDNNKKLGEWAGLSKLDNMGKARKVVGCSC 129 (157)
Q Consensus 51 klv~G~~~v~KaL~kgkakLVIlA~D~s~~~~~~~l~~lc~~~~I-pvi~v~sk~eLG~a~G~~~~~~~gk~rki~~~s~ 129 (157)
.++.-..|+..+-.-|---.++|+.--++ .....+..+|.+.|. +++.+.+.+||-+++... +..
T Consensus 111 DFiid~yQI~eAr~~GADaILLI~a~L~~-~~l~~l~~~A~~lGl~~LvEVh~~~El~rAl~~~-------------a~i 176 (258)
T 4a29_A 111 DFIVKESQIDDAYNLGADTVLLIVKILTE-RELESLLEYARSYGMEPLILINDENDLDIALRIG-------------ARF 176 (258)
T ss_dssp SCCCSHHHHHHHHHHTCSEEEEEGGGSCH-HHHHHHHHHHHHTTCCCEEEESSHHHHHHHHHTT-------------CSE
T ss_pred cccccHHHHHHHHHcCCCeeehHHhhcCH-HHHHHHHHHHHHHhHHHHHhcchHHHHHHHhcCC-------------CcE
Confidence 46677778888877787666677877777 455567889999998 556688999999998642 345
Q ss_pred EEEecCch
Q psy16564 130 VVIKVRNW 137 (157)
Q Consensus 130 vaI~D~g~ 137 (157)
++|-+.++
T Consensus 177 IGINNRnL 184 (258)
T 4a29_A 177 IGIMSRDF 184 (258)
T ss_dssp EEECSBCT
T ss_pred EEEeCCCc
Confidence 78866544
No 63
>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP}
Probab=41.35 E-value=64 Score=21.22 Aligned_cols=72 Identities=19% Similarity=0.251 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHHhcCC---ceeeHHHHHHHHhcCCeeEEEEcCCCCchhhHHHHHHHHH---hCCCCEEEeCCHHHHHH
Q psy16564 35 INKALQQVLKTARAHDG---LAKGLHEAAKALDRREAQLCVLADNCDEPAYKKLVQALCS---EHQIPLIKVDNNKKLGE 108 (157)
Q Consensus 35 ~~k~L~~lL~~A~~agk---lv~G~~~v~KaL~kgkakLVIlA~D~s~~~~~~~l~~lc~---~~~Ipvi~v~sk~eLG~ 108 (157)
....+..+|.. .|. ......++++.++.....+||+--+.+..+-...+..+.+ ..++|++.+.+..+-..
T Consensus 18 ~~~~l~~~l~~---~g~~v~~~~~~~~a~~~l~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~~~ii~~s~~~~~~~ 94 (140)
T 3grc_A 18 IARLLNLMLEK---GGFDSDMVHSAAQALEQVARRPYAAMTVDLNLPDQDGVSLIRALRRDSRTRDLAIVVVSANAREGE 94 (140)
T ss_dssp HHHHHHHHHHH---TTCEEEEECSHHHHHHHHHHSCCSEEEECSCCSSSCHHHHHHHHHTSGGGTTCEEEEECTTHHHHH
T ss_pred HHHHHHHHHHH---CCCeEEEECCHHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHhCcccCCCCEEEEecCCChHH
Confidence 44555555554 243 3445678888898899999999776655444444554443 46899999986655444
Q ss_pred H
Q psy16564 109 W 109 (157)
Q Consensus 109 a 109 (157)
.
T Consensus 95 ~ 95 (140)
T 3grc_A 95 L 95 (140)
T ss_dssp H
T ss_pred H
Confidence 3
No 64
>3nav_A Tryptophan synthase alpha chain; alpha subunit, structural genomics, CSG center for structural genomics of infectious diseases; 2.10A {Vibrio cholerae o1 biovar el tor} SCOP: c.1.2.4
Probab=40.22 E-value=1.2e+02 Score=24.38 Aligned_cols=75 Identities=11% Similarity=0.127 Sum_probs=44.2
Q ss_pred ccHHHHHHHHHHHHHhcC-C---ce---------eeHHHHHHHHh-cCCeeEEEEcCCCCchhhHHHHHHHHHhCCCCEE
Q psy16564 33 SDINKALQQVLKTARAHD-G---LA---------KGLHEAAKALD-RREAQLCVLADNCDEPAYKKLVQALCSEHQIPLI 98 (157)
Q Consensus 33 m~~~k~L~~lL~~A~~ag-k---lv---------~G~~~v~KaL~-kgkakLVIlA~D~s~~~~~~~l~~lc~~~~Ipvi 98 (157)
+++.+.+ ++++..|+.+ . +. .|...-.+.+. .| +.-||+ .|.+++ -...+...|+++++..+
T Consensus 79 ~~~~~~~-~~v~~~r~~~~~~Pivlm~Y~n~v~~~g~~~f~~~~~~aG-vdGvIi-pDlp~e-e~~~~~~~~~~~gl~~I 154 (271)
T 3nav_A 79 TTPDICF-ELIAQIRARNPETPIGLLMYANLVYARGIDDFYQRCQKAG-VDSVLI-ADVPTN-ESQPFVAAAEKFGIQPI 154 (271)
T ss_dssp CCHHHHH-HHHHHHHHHCTTSCEEEEECHHHHHHTCHHHHHHHHHHHT-CCEEEE-TTSCGG-GCHHHHHHHHHTTCEEE
T ss_pred CCHHHHH-HHHHHHHhcCCCCCEEEEecCcHHHHHhHHHHHHHHHHCC-CCEEEE-CCCCHH-HHHHHHHHHHHcCCeEE
Confidence 3445556 7777777652 2 12 35554444444 45 444444 588884 45678889999999765
Q ss_pred E-eC---CHHHHHHHhC
Q psy16564 99 K-VD---NNKKLGEWAG 111 (157)
Q Consensus 99 ~-v~---sk~eLG~a~G 111 (157)
+ +. +.++|-++..
T Consensus 155 ~lvap~t~~eri~~i~~ 171 (271)
T 3nav_A 155 FIAPPTASDETLRAVAQ 171 (271)
T ss_dssp EEECTTCCHHHHHHHHH
T ss_pred EEECCCCCHHHHHHHHH
Confidence 4 32 3456666554
No 65
>1x7o_A Avirb, rRNA methyltransferase; SPOU, C-terminal knot, seMet; 2.37A {Streptomyces viridochromogenes} PDB: 1x7p_A*
Probab=39.47 E-value=63 Score=26.14 Aligned_cols=58 Identities=14% Similarity=0.076 Sum_probs=40.2
Q ss_pred CceeeHHHHHHHHhcCC-eeEEEEcCCCCchhhHHHHHHHHHhCCCCEEEeCCHHHHHHHhCC
Q psy16564 51 GLAKGLHEAAKALDRRE-AQLCVLADNCDEPAYKKLVQALCSEHQIPLIKVDNNKKLGEWAGL 112 (157)
Q Consensus 51 klv~G~~~v~KaL~kgk-akLVIlA~D~s~~~~~~~l~~lc~~~~Ipvi~v~sk~eLG~a~G~ 112 (157)
-++.|.+.+..+|+.+. +..|+++.+... . ..+..+....++|++.+ +.+.|.++.+.
T Consensus 41 f~veG~~~V~eal~~~~~i~~l~~~~~~~~-~--~~~~~l~~~~~~~v~~v-~~~~l~~ls~~ 99 (287)
T 1x7o_A 41 FLVMGVRPISLAVEHGWPVRTLLYDGQREL-S--KWARELLRTVRTEQIAM-APDLLMELGEK 99 (287)
T ss_dssp EEEESHHHHHHHHHTTCCEEEEEEESSCCC-C--HHHHHHHHHSCSEEEEE-CHHHHTTSSCS
T ss_pred EEEEeHHHHHHHHhCCCCeEEEEEecCccc-c--hhHHHHHHHcCCcEEEe-CHHHHHHHhCC
Confidence 36889999999999875 788888887653 1 12333344445887665 47788887764
No 66
>3vus_A Poly-beta-1,6-N-acetyl-D-glucosamine N-deacetylas; deacetyl hydrolase; 1.65A {Escherichia coli}
Probab=39.15 E-value=94 Score=24.50 Aligned_cols=65 Identities=14% Similarity=0.084 Sum_probs=46.6
Q ss_pred HHHHHHHHHHhcCCceeeHHHHHHHHhcCC---eeEEEEcCCCCchhhHHHHHHHHHhCCCCEEEeCC
Q psy16564 38 ALQQVLKTARAHDGLAKGLHEAAKALDRRE---AQLCVLADNCDEPAYKKLVQALCSEHQIPLIKVDN 102 (157)
Q Consensus 38 ~L~~lL~~A~~agklv~G~~~v~KaL~kgk---akLVIlA~D~s~~~~~~~l~~lc~~~~Ipvi~v~s 102 (157)
.++..|..-++.|.-+....+....+..++ -+.|+|.=|-.+......+..+-+++++|..++-.
T Consensus 32 ~f~~ql~~L~~~gy~~vs~~~~~~~~~~~~~~~~~~v~lTfDDg~~~~~~~~~~~l~~~~~~atfFv~ 99 (268)
T 3vus_A 32 ALREQFAWLRENGYQPVSIAQIREAHRGGKPLPEKAVVLTFDDGYQSFYTRVFPILQAFQWPAVWAPV 99 (268)
T ss_dssp HHHHHHHHHHHTTCEECCHHHHHHHHTTSSCCCTTEEEEEEEETBHHHHHHHHHHHHHHTCCEEEEEC
T ss_pred HHHHHHHHHHHCCCEEecHHHHHHHHhcCCCCCCCEEEEEEeCCchhHHHHHHHHHHHcCCCEEEEEe
Confidence 444666666677999999999999998875 46666666544435444556677889999887553
No 67
>3gt7_A Sensor protein; structural genomics, signal receiver domain, kinase, PSI-2, protein structure initiative; 2.30A {Syntrophus aciditrophicus SB}
Probab=38.72 E-value=53 Score=22.38 Aligned_cols=64 Identities=19% Similarity=0.158 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHHhcCC---ceeeHHHHHHHHhcCCeeEEEEcCCCCchhhHHHHHHHHHh---CCCCEEEeC
Q psy16564 35 INKALQQVLKTARAHDG---LAKGLHEAAKALDRREAQLCVLADNCDEPAYKKLVQALCSE---HQIPLIKVD 101 (157)
Q Consensus 35 ~~k~L~~lL~~A~~agk---lv~G~~~v~KaL~kgkakLVIlA~D~s~~~~~~~l~~lc~~---~~Ipvi~v~ 101 (157)
....+..+|.. .|. ......++++.++.....+||+--+.+..+-...+..+-.. .++|++.+.
T Consensus 19 ~~~~l~~~L~~---~g~~v~~~~~~~~al~~l~~~~~dlii~D~~l~~~~g~~~~~~lr~~~~~~~~pii~~s 88 (154)
T 3gt7_A 19 QAEHLKHILEE---TGYQTEHVRNGREAVRFLSLTRPDLIISDVLMPEMDGYALCRWLKGQPDLRTIPVILLT 88 (154)
T ss_dssp HHHHHHHHHHT---TTCEEEEESSHHHHHHHHTTCCCSEEEEESCCSSSCHHHHHHHHHHSTTTTTSCEEEEE
T ss_pred HHHHHHHHHHH---CCCEEEEeCCHHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHhCCCcCCCCEEEEE
Confidence 44555555543 243 23356788888888889999998766553444445544443 579999875
No 68
>3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} SCOP: c.23.1.0
Probab=38.32 E-value=49 Score=21.41 Aligned_cols=65 Identities=15% Similarity=0.165 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHHhcCC---ceeeHHHHHHHHhcCCeeEEEEcCCCCchhhHHHHHHHHH---hCCCCEEEeCC
Q psy16564 35 INKALQQVLKTARAHDG---LAKGLHEAAKALDRREAQLCVLADNCDEPAYKKLVQALCS---EHQIPLIKVDN 102 (157)
Q Consensus 35 ~~k~L~~lL~~A~~agk---lv~G~~~v~KaL~kgkakLVIlA~D~s~~~~~~~l~~lc~---~~~Ipvi~v~s 102 (157)
....+..+|... |. .+....++++.+.+....+||+--+.+..+-...+..+.+ ..++|++.+.+
T Consensus 15 ~~~~l~~~L~~~---g~~v~~~~~~~~a~~~l~~~~~dlii~D~~l~~~~g~~~~~~l~~~~~~~~~~ii~~s~ 85 (127)
T 3i42_A 15 AAETFKELLEML---GFQADYVMSGTDALHAMSTRGYDAVFIDLNLPDTSGLALVKQLRALPMEKTSKFVAVSG 85 (127)
T ss_dssp HHHHHHHHHHHT---TEEEEEESSHHHHHHHHHHSCCSEEEEESBCSSSBHHHHHHHHHHSCCSSCCEEEEEEC
T ss_pred HHHHHHHHHHHc---CCCEEEECCHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHhhhccCCCCEEEEEC
Confidence 445555555542 32 3445678888888888999999877655444455555555 36789888763
No 69
>1d2f_A MALY protein; aminotransferase fold, large PLP-binding domain, small C-TER domain, open alpha-beta structure., transferase; HET: PLP; 2.50A {Escherichia coli} SCOP: c.67.1.3
Probab=37.62 E-value=72 Score=25.24 Aligned_cols=46 Identities=15% Similarity=0.308 Sum_probs=30.3
Q ss_pred HHHHHHHHhcCCeeEEEEcC------CCCchhhHHHHHHHHHhCCCCEEEeC
Q psy16564 56 LHEAAKALDRREAQLCVLAD------NCDEPAYKKLVQALCSEHQIPLIKVD 101 (157)
Q Consensus 56 ~~~v~KaL~kgkakLVIlA~------D~s~~~~~~~l~~lc~~~~Ipvi~v~ 101 (157)
..+..++|...+.++|++.. .+-+......|.++|++++++++.=+
T Consensus 151 ~~~l~~~l~~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De 202 (390)
T 1d2f_A 151 MGKLEAVLAKPECKIMLLCSPQNPTGKVWTCDELEIMADLCERHGVRVISDE 202 (390)
T ss_dssp HHHHHHHHTSTTEEEEEEESSCTTTCCCCCTTHHHHHHHHHHHTTCEEEEEC
T ss_pred HHHHHHHhccCCCeEEEEeCCCCCCCcCcCHHHHHHHHHHHHHcCCEEEEEc
Confidence 44556666655788888753 12122346678899999999888644
No 70
>2j48_A Two-component sensor kinase; pseudo-receiver, circadian clock, transferase, response regulator, histidine protein kinase; NMR {Synechococcus elongatus}
Probab=37.55 E-value=47 Score=20.65 Aligned_cols=64 Identities=16% Similarity=0.054 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHhcCCc---eeeHHHHHHHHhcCCeeEEEEcCCCCchhhHHHHHHHHHh---CCCCEEEeC
Q psy16564 35 INKALQQVLKTARAHDGL---AKGLHEAAKALDRREAQLCVLADNCDEPAYKKLVQALCSE---HQIPLIKVD 101 (157)
Q Consensus 35 ~~k~L~~lL~~A~~agkl---v~G~~~v~KaL~kgkakLVIlA~D~s~~~~~~~l~~lc~~---~~Ipvi~v~ 101 (157)
....+..+|.. .|.- .....+.++.+......++|+--+.+...-...+..+... .++|++.+.
T Consensus 13 ~~~~l~~~l~~---~g~~v~~~~~~~~~~~~l~~~~~dlii~d~~~~~~~~~~~~~~l~~~~~~~~~~ii~~~ 82 (119)
T 2j48_A 13 AATVVCEMLTA---AGFKVIWLVDGSTALDQLDLLQPIVILMAWPPPDQSCLLLLQHLREHQADPHPPLVLFL 82 (119)
T ss_dssp HHHHHHHHHHH---TTCEEEEESCHHHHHHHHHHHCCSEEEEECSTTCCTHHHHHHHHHHTCCCSSCCCEEEE
T ss_pred HHHHHHHHHHh---CCcEEEEecCHHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHhccccCCCCEEEEe
Confidence 34445455543 3432 3345677788888788899887765543444555555555 578988865
No 71
>3ib7_A ICC protein; metallophosphoesterase, alpha-beta fold, swapped-dimer, HYDR; HET: BTB; 1.60A {Mycobacterium tuberculosis} PDB: 3ib8_A* 2hy1_A 2hyp_A 2hyo_A
Probab=37.43 E-value=49 Score=25.63 Aligned_cols=38 Identities=18% Similarity=0.251 Sum_probs=24.8
Q ss_pred CCeeEEEEcCCCCch----h---hHHHHHHHHHhCCCCEEEeCCH
Q psy16564 66 REAQLCVLADNCDEP----A---YKKLVQALCSEHQIPLIKVDNN 103 (157)
Q Consensus 66 gkakLVIlA~D~s~~----~---~~~~l~~lc~~~~Ipvi~v~sk 103 (157)
.++.+||++.|.-.. . ....+..+.+..++|++.+...
T Consensus 65 ~~~d~vi~~GDl~~~~~~~~~~~~~~~l~~l~~~~~~pv~~v~GN 109 (330)
T 3ib7_A 65 LRPDAIVFTGDLADKGEPAAYRKLRGLVEPFAAQLGAELVWVMGN 109 (330)
T ss_dssp CCCSEEEECSCCBTTCCHHHHHHHHHHHHHHHHHHTCEEEECCCT
T ss_pred CCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHhhcCCCEEEeCCC
Confidence 679999999996431 1 2233444445569999998733
No 72
>3qja_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, T structural genomics consortium, TBSGC, lyase; 1.29A {Mycobacterium tuberculosis} PDB: 3t40_A* 3t44_A* 3t55_A* 3t78_A* 4fb7_A*
Probab=37.42 E-value=96 Score=24.86 Aligned_cols=58 Identities=5% Similarity=0.004 Sum_probs=42.4
Q ss_pred ceeeHHHHHHHHhcCCeeEEEEcCCCCchhhHHHHHHHHHhCCCCEE-EeCCHHHHHHHh
Q psy16564 52 LAKGLHEAAKALDRREAQLCVLADNCDEPAYKKLVQALCSEHQIPLI-KVDNNKKLGEWA 110 (157)
Q Consensus 52 lv~G~~~v~KaL~kgkakLVIlA~D~s~~~~~~~l~~lc~~~~Ipvi-~v~sk~eLG~a~ 110 (157)
+..-..|+..+..-|--.++++..|.++ .....+...|+++|+.++ .+.+.+++-++.
T Consensus 121 fiid~~qv~~A~~~GAD~VlLi~a~l~~-~~l~~l~~~a~~lGl~~lvev~t~ee~~~A~ 179 (272)
T 3qja_A 121 FVVQPYQIHEARAHGADMLLLIVAALEQ-SVLVSMLDRTESLGMTALVEVHTEQEADRAL 179 (272)
T ss_dssp CCCSHHHHHHHHHTTCSEEEEEGGGSCH-HHHHHHHHHHHHTTCEEEEEESSHHHHHHHH
T ss_pred cccCHHHHHHHHHcCCCEEEEecccCCH-HHHHHHHHHHHHCCCcEEEEcCCHHHHHHHH
Confidence 4444557888888886666666888887 445567788999999754 467999988776
No 73
>3lvj_C Sulfurtransferase TUSA; protein-protein complex, structural genomics, montreal-kings bacterial structural genomics initiative, BSGI; HET: PLP; 2.44A {Escherichia coli} SCOP: d.68.3.3 PDB: 3lvk_B* 1dcj_A
Probab=37.22 E-value=57 Score=21.23 Aligned_cols=39 Identities=18% Similarity=0.338 Sum_probs=26.7
Q ss_pred HHHHHh---cCCeeEEEEcCCCCchhhHHHHHHHHHhCCCCEEEeC
Q psy16564 59 AAKALD---RREAQLCVLADNCDEPAYKKLVQALCSEHQIPLIKVD 101 (157)
Q Consensus 59 v~KaL~---kgkakLVIlA~D~s~~~~~~~l~~lc~~~~Ipvi~v~ 101 (157)
+.++|+ .|+ .|.|++.|-.. ...|+.+|++.|-.+....
T Consensus 27 ~kkal~~l~~G~-~l~V~~dd~~a---~~di~~~~~~~G~~~~~~~ 68 (82)
T 3lvj_C 27 VRKTVRNMQPGE-TLLIIADDPAT---TRDIPGFCTFMEHELVAKE 68 (82)
T ss_dssp HHHHHHTSCTTC-EEEEEECCTTH---HHHHHHHHHHTTCEEEEEE
T ss_pred HHHHHHhCCCCC-EEEEEECCccH---HHHHHHHHHHCCCEEEEEE
Confidence 344554 454 47777777544 5678999999998887653
No 74
>1ivn_A Thioesterase I; hydrolase, protease; 1.90A {Escherichia coli} SCOP: c.23.10.5 PDB: 1u8u_A* 1j00_A* 1jrl_A 1v2g_A*
Probab=37.16 E-value=94 Score=21.87 Aligned_cols=45 Identities=13% Similarity=0.237 Sum_probs=28.3
Q ss_pred HHHHHHHhcCCeeEEEEcCCCCc-------hhhHHHHHHHHHhCCCCEEEeC
Q psy16564 57 HEAAKALDRREAQLCVLADNCDE-------PAYKKLVQALCSEHQIPLIKVD 101 (157)
Q Consensus 57 ~~v~KaL~kgkakLVIlA~D~s~-------~~~~~~l~~lc~~~~Ipvi~v~ 101 (157)
.+.++.++...++++++..-.++ ..+...+.++|++++++++-+.
T Consensus 89 ~~li~~~~~~~~~vil~~~~~p~~~~~~~~~~~n~~~~~~a~~~~v~~iD~~ 140 (190)
T 1ivn_A 89 RQILQDVKAANAEPLLMQIRLPANYGRRYNEAFSAIYPKLAKEFDVPLLPFF 140 (190)
T ss_dssp HHHHHHHHHTTCEEEEECCCCCGGGCHHHHHHHHHHHHHHHHHTTCCEECCT
T ss_pred HHHHHHHHHcCCCEEEEeccCCcchhHHHHHHHHHHHHHHHHHcCCeEEccH
Confidence 34445555444777766532222 1355678889999999998765
No 75
>1c7n_A Cystalysin; transferase, aminotransferase, pyridoxal phosphate; HET: PLP; 1.90A {Treponema denticola} SCOP: c.67.1.3 PDB: 1c7o_A*
Probab=36.89 E-value=71 Score=25.31 Aligned_cols=46 Identities=4% Similarity=0.063 Sum_probs=31.0
Q ss_pred HHHHHHHHhcCCeeEEEEcCC------CCchhhHHHHHHHHHhCCCCEEEeC
Q psy16564 56 LHEAAKALDRREAQLCVLADN------CDEPAYKKLVQALCSEHQIPLIKVD 101 (157)
Q Consensus 56 ~~~v~KaL~kgkakLVIlA~D------~s~~~~~~~l~~lc~~~~Ipvi~v~ 101 (157)
.....++|.+.+.++|++..= +-+....+.|.++|++++++++.=+
T Consensus 153 ~~~l~~~l~~~~~~~v~~~~~~nptG~~~~~~~l~~i~~~~~~~~~~li~De 204 (399)
T 1c7n_A 153 FQKLEKLSKDKNNKALLFCSPHNPVGRVWKKDELQKIKDIVLKSDLMLWSDE 204 (399)
T ss_dssp HHHHHHHHTCTTEEEEEEESSBTTTTBCCCHHHHHHHHHHHHHSSCEEEEEC
T ss_pred HHHHHHHhccCCCcEEEEcCCCCCCCcCcCHHHHHHHHHHHHHcCCEEEEEc
Confidence 455566666567888887531 2222446778899999999888643
No 76
>2vt1_B Surface presentation of antigens protein SPAS; specificity switch, virulence, transmembrane, inner membrane, FLHB, YSCU, T3SS, plasmid; 2.00A {Shigella flexneri} SCOP: d.367.1.1
Probab=36.70 E-value=18 Score=25.12 Aligned_cols=35 Identities=17% Similarity=0.113 Sum_probs=24.7
Q ss_pred EEcCCCCchhhHHHHHHHHHhCCCCEEEeCCHHHHHHHhC
Q psy16564 72 VLADNCDEPAYKKLVQALCSEHQIPLIKVDNNKKLGEWAG 111 (157)
Q Consensus 72 IlA~D~s~~~~~~~l~~lc~~~~Ipvi~v~sk~eLG~a~G 111 (157)
|+|.=.+ .+...|...|+++|||++.- ..|.+++-
T Consensus 20 VvAKG~~--~~A~~I~e~A~e~gVPi~e~---~~LAr~Ly 54 (93)
T 2vt1_B 20 ISLIETN--QCALAVRKYANEVGIPTVRD---VKLARKLY 54 (93)
T ss_dssp EEEEEEH--HHHHHHHHHHHHTTCCEEEC---HHHHHHHH
T ss_pred EEEEeCc--HHHHHHHHHHHHcCCCEEEC---HHHHHHHH
Confidence 3555444 37788999999999999853 45555554
No 77
>3av3_A Phosphoribosylglycinamide formyltransferase; structural genomics, riken structural genomics/proteomics in RSGI, rossmann fold; HET: MSE; 1.70A {Geobacillus kaustophilus}
Probab=36.69 E-value=67 Score=24.72 Aligned_cols=41 Identities=17% Similarity=0.208 Sum_probs=26.5
Q ss_pred HHHHHHHhcC--CeeEEEEcCCCCchhhHHHHHHHHHhCCCCEEEeC
Q psy16564 57 HEAAKALDRR--EAQLCVLADNCDEPAYKKLVQALCSEHQIPLIKVD 101 (157)
Q Consensus 57 ~~v~KaL~kg--kakLVIlA~D~s~~~~~~~l~~lc~~~~Ipvi~v~ 101 (157)
..+++++..+ ....+.+-.|-+. . .+..+|+++|||++.+.
T Consensus 18 ~~~l~~l~~~~l~~~I~~Vit~~~~-~---~v~~~A~~~gIp~~~~~ 60 (212)
T 3av3_A 18 QAIVDAAKRGDLPARVALLVCDRPG-A---KVIERAARENVPAFVFS 60 (212)
T ss_dssp HHHHHHHHTTCCCEEEEEEEESSTT-C---HHHHHHHHTTCCEEECC
T ss_pred HHHHHHHHhCCCCCeEEEEEeCCCC-c---HHHHHHHHcCCCEEEeC
Confidence 4556666666 3555555555322 1 45678999999999865
No 78
>2gkg_A Response regulator homolog; social motility, receiver domain, signalling, high resolutio signaling protein; 1.00A {Myxococcus xanthus} PDB: 2i6f_A 2nt4_A 2nt3_A
Probab=36.67 E-value=59 Score=20.63 Aligned_cols=63 Identities=14% Similarity=0.209 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHhcCC---ceeeHHHHHHHHhcCCeeEEEEcCCCC-chhhHHHHHHHHHh---CCCCEEEe
Q psy16564 35 INKALQQVLKTARAHDG---LAKGLHEAAKALDRREAQLCVLADNCD-EPAYKKLVQALCSE---HQIPLIKV 100 (157)
Q Consensus 35 ~~k~L~~lL~~A~~agk---lv~G~~~v~KaL~kgkakLVIlA~D~s-~~~~~~~l~~lc~~---~~Ipvi~v 100 (157)
....+..+|... |. ......+.++.++.....+||+--+.+ ..+-...+..+.+. .++|++.+
T Consensus 17 ~~~~l~~~L~~~---g~~v~~~~~~~~a~~~~~~~~~dlvi~d~~~~~~~~g~~~~~~l~~~~~~~~~~ii~~ 86 (127)
T 2gkg_A 17 LSATLRSALEGR---GFTVDETTDGKGSVEQIRRDRPDLVVLAVDLSAGQNGYLICGKLKKDDDLKNVPIVII 86 (127)
T ss_dssp HHHHHHHHHHHH---TCEEEEECCHHHHHHHHHHHCCSEEEEESBCGGGCBHHHHHHHHHHSTTTTTSCEEEE
T ss_pred HHHHHHHHHHhc---CceEEEecCHHHHHHHHHhcCCCEEEEeCCCCCCCCHHHHHHHHhcCccccCCCEEEE
Confidence 444555555542 32 334567788888888889999876665 32334445555443 68999988
No 79
>3eod_A Protein HNR; response regulator, phosphoprotein, two-component regulatory system, signaling protein; 1.75A {Escherichia coli K12}
Probab=36.65 E-value=74 Score=20.55 Aligned_cols=64 Identities=14% Similarity=0.126 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHhcCCc---eeeHHHHHHHHhcCCeeEEEEcCCCCchhhHHHHHHHHHh-CCCCEEEeC
Q psy16564 35 INKALQQVLKTARAHDGL---AKGLHEAAKALDRREAQLCVLADNCDEPAYKKLVQALCSE-HQIPLIKVD 101 (157)
Q Consensus 35 ~~k~L~~lL~~A~~agkl---v~G~~~v~KaL~kgkakLVIlA~D~s~~~~~~~l~~lc~~-~~Ipvi~v~ 101 (157)
....+..+|... |.- .....++++.++.....+||+--+.+..+-...+..+.+. .++|++.+.
T Consensus 19 ~~~~l~~~L~~~---g~~v~~~~~~~~a~~~l~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~ii~~t 86 (130)
T 3eod_A 19 FRSLLDSWFSSL---GATTVLAADGVDALELLGGFTPDLMICDIAMPRMNGLKLLEHIRNRGDQTPVLVIS 86 (130)
T ss_dssp HHHHHHHHHHHT---TCEEEEESCHHHHHHHHTTCCCSEEEECCC-----CHHHHHHHHHTTCCCCEEEEE
T ss_pred HHHHHHHHHHhC---CceEEEeCCHHHHHHHHhcCCCCEEEEecCCCCCCHHHHHHHHHhcCCCCCEEEEE
Confidence 445555555543 432 3456778888888889999997665443333444444333 478998876
No 80
>3p9d_H T-complex protein 1 subunit theta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_h* 4d8q_H* 4d8r_h*
Probab=36.64 E-value=48 Score=29.47 Aligned_cols=51 Identities=18% Similarity=0.165 Sum_probs=36.1
Q ss_pred HHHHHHHhcCCeeEEEEcCCCCchhhHHHHHHHHHhCCCCEEEeCCHH---HHHHHhCC
Q psy16564 57 HEAAKALDRREAQLCVLADNCDEPAYKKLVQALCSEHQIPLIKVDNNK---KLGEWAGL 112 (157)
Q Consensus 57 ~~v~KaL~kgkakLVIlA~D~s~~~~~~~l~~lc~~~~Ipvi~v~sk~---eLG~a~G~ 112 (157)
+..++.|.+-.+.+||++.++++ ...+++.+++|-++.-.++. +|.+++|-
T Consensus 285 ~~~v~~I~~~g~~vvi~~~~I~~-----~al~~L~~~gI~av~~v~~~~leria~~tGa 338 (568)
T 3p9d_H 285 DAMMKEIADMGVECIVAGAGVGE-----LALHYLNRYGILVLKVPSKFELRRLCRVCGA 338 (568)
T ss_dssp HHHHHHHHHTTCCEEEECSCCCH-----HHHHHHHHHTCEEECCCCHHHHHHHHHHHSC
T ss_pred HHHHHHHHhcCCeEEEECCCcCh-----HHHHHHHHCCeEEEecCCHHHHHHHHHHhCC
Confidence 34566677777999999999998 23345567799888866554 55566664
No 81
>3h5i_A Response regulator/sensory box protein/ggdef domain protein; structural genomics, transcription, PSI-2; 1.90A {Carboxydothermus hydrogenoformans z-2901}
Probab=36.58 E-value=87 Score=20.70 Aligned_cols=66 Identities=12% Similarity=0.101 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHHhcCC---ceeeHHHHHHHHhc-CCeeEEEEcCCCCc-hhhHHHHHHHHHhCCCCEEEeCCH
Q psy16564 35 INKALQQVLKTARAHDG---LAKGLHEAAKALDR-REAQLCVLADNCDE-PAYKKLVQALCSEHQIPLIKVDNN 103 (157)
Q Consensus 35 ~~k~L~~lL~~A~~agk---lv~G~~~v~KaL~k-gkakLVIlA~D~s~-~~~~~~l~~lc~~~~Ipvi~v~sk 103 (157)
....|..+|.. .|. ......+++..+.+ ....+||+--+.++ .+-...+..+-+..++|++.+.+.
T Consensus 17 ~~~~l~~~L~~---~g~~v~~~~~~~~a~~~l~~~~~~dlvi~D~~l~~~~~g~~~~~~l~~~~~~~ii~ls~~ 87 (140)
T 3h5i_A 17 QAKTIANILNK---YGYTVEIALTGEAAVEKVSGGWYPDLILMDIELGEGMDGVQTALAIQQISELPVVFLTAH 87 (140)
T ss_dssp HHHHHHHHHHH---TTCEEEEESSHHHHHHHHHTTCCCSEEEEESSCSSSCCHHHHHHHHHHHCCCCEEEEESS
T ss_pred HHHHHHHHHHH---cCCEEEEecChHHHHHHHhcCCCCCEEEEeccCCCCCCHHHHHHHHHhCCCCCEEEEECC
Confidence 44555566654 243 23356777888877 57889998776532 234444555545578999987743
No 82
>3kht_A Response regulator; PSI-II, 11023K, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.10A {Hahella chejuensis} SCOP: c.23.1.0
Probab=36.43 E-value=67 Score=21.28 Aligned_cols=65 Identities=12% Similarity=0.119 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHHhcCCc-----eeeHHHHHHHHhcCCeeEEEEcCCCCchhhHHHHHHHHH---hCCCCEEEeCC
Q psy16564 35 INKALQQVLKTARAHDGL-----AKGLHEAAKALDRREAQLCVLADNCDEPAYKKLVQALCS---EHQIPLIKVDN 102 (157)
Q Consensus 35 ~~k~L~~lL~~A~~agkl-----v~G~~~v~KaL~kgkakLVIlA~D~s~~~~~~~l~~lc~---~~~Ipvi~v~s 102 (157)
....+..+|.. .|.. .....++++.+......+||+--+.+..+-...+..+-+ ..++|++.+.+
T Consensus 17 ~~~~l~~~L~~---~~~~~~v~~~~~~~~a~~~l~~~~~dlii~D~~l~~~~g~~~~~~lr~~~~~~~~pii~~s~ 89 (144)
T 3kht_A 17 DIALIRRVLDR---KDIHCQLEFVDNGAKALYQVQQAKYDLIILDIGLPIANGFEVMSAVRKPGANQHTPIVILTD 89 (144)
T ss_dssp HHHHHHHHHHH---TTCCEEEEEESSHHHHHHHHTTCCCSEEEECTTCGGGCHHHHHHHHHSSSTTTTCCEEEEET
T ss_pred HHHHHHHHHHh---cCCCeeEEEECCHHHHHHHhhcCCCCEEEEeCCCCCCCHHHHHHHHHhcccccCCCEEEEeC
Confidence 44555555554 2432 335778888998888999999776655444445555543 35799998763
No 83
>1tp9_A Peroxiredoxin, PRX D (type II); oligomer, thioredoxin fold, oxidoreductase; 1.62A {Populus trichocarpa} SCOP: c.47.1.10
Probab=35.63 E-value=63 Score=22.72 Aligned_cols=51 Identities=14% Similarity=0.097 Sum_probs=35.2
Q ss_pred HHHHHHhcCCee-EEEEcCCCCchhhHHHHHHHHHhCCC--CEEEeC-CHHHHHHHhCCC
Q psy16564 58 EAAKALDRREAQ-LCVLADNCDEPAYKKLVQALCSEHQI--PLIKVD-NNKKLGEWAGLS 113 (157)
Q Consensus 58 ~v~KaL~kgkak-LVIlA~D~s~~~~~~~l~~lc~~~~I--pvi~v~-sk~eLG~a~G~~ 113 (157)
+..+.++...+. +|.|+.|..+ .+.++++++++ ++-.+. ...++.++.|..
T Consensus 61 ~~~~~~~~~~v~~vv~Is~d~~~-----~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~ 115 (162)
T 1tp9_A 61 EKAGELKSKGVTEILCISVNDPF-----VMKAWAKSYPENKHVKFLADGSATYTHALGLE 115 (162)
T ss_dssp HHHHHHHHTTCCCEEEEESSCHH-----HHHHHHHTCTTCSSEEEEECTTSHHHHHTTCE
T ss_pred HHHHHHHHCCCCEEEEEECCCHH-----HHHHHHHhcCCCCCeEEEECCCchHHHHcCcc
Confidence 334445555688 9999888422 35678889888 666554 567899999974
No 84
>3erw_A Sporulation thiol-disulfide oxidoreductase A; thioredoxin-like fold, RESA-like fold, dithiol, STOA, redox-active center; 2.50A {Bacillus subtilis} SCOP: c.47.1.0
Probab=35.52 E-value=68 Score=21.08 Aligned_cols=52 Identities=12% Similarity=0.074 Sum_probs=35.1
Q ss_pred HHHhcCCeeEEEEcCCCCchhhHHHHHHHHHhCCCCEEEeC-CHHHHHHHhCCC
Q psy16564 61 KALDRREAQLCVLADNCDEPAYKKLVQALCSEHQIPLIKVD-NNKKLGEWAGLS 113 (157)
Q Consensus 61 KaL~kgkakLVIlA~D~s~~~~~~~l~~lc~~~~Ipvi~v~-sk~eLG~a~G~~ 113 (157)
+......+.++.+..|..+ .....+..+.+++++++-.+. ...+|.+..|..
T Consensus 61 ~~~~~~~~~~v~v~~d~~~-~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~ 113 (145)
T 3erw_A 61 DAHPSDSVKLVTVNLVNSE-QNQQVVEDFIKANKLTFPIVLDSKGELMKEYHII 113 (145)
T ss_dssp HHCCCSSEEEEEEECGGGS-SCHHHHHHHHHHTTCCSCEEECSSSHHHHHTTCC
T ss_pred HHcCCCCEEEEEEEccCCc-CCHHHHHHHHHHcCCceeEEEcCchhHHHhcCcC
Confidence 3444356888888877643 344566777888888765544 566899999874
No 85
>2rjn_A Response regulator receiver:metal-dependent phosphohydrolase, HD subdomain; structural genomics, oceanospirillum SP. MED92; 2.10A {Neptuniibacter caesariensis}
Probab=34.67 E-value=72 Score=21.45 Aligned_cols=67 Identities=15% Similarity=0.153 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHHhcCC---ceeeHHHHHHHHhcCCeeEEEEcCCCCchhhHHHHHHHHHh-CCCCEEEeCCHH
Q psy16564 35 INKALQQVLKTARAHDG---LAKGLHEAAKALDRREAQLCVLADNCDEPAYKKLVQALCSE-HQIPLIKVDNNK 104 (157)
Q Consensus 35 ~~k~L~~lL~~A~~agk---lv~G~~~v~KaL~kgkakLVIlA~D~s~~~~~~~l~~lc~~-~~Ipvi~v~sk~ 104 (157)
....+..+|.. .|. ......++++.+......+||+--+.+..+-...+..+... .++|++.+.+..
T Consensus 19 ~~~~l~~~L~~---~g~~v~~~~~~~~a~~~l~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~ii~ls~~~ 89 (154)
T 2rjn_A 19 ILNSLKRLIKR---LGCNIITFTSPLDALEALKGTSVQLVISDMRMPEMGGEVFLEQVAKSYPDIERVVISGYA 89 (154)
T ss_dssp HHHHHHHHHHT---TTCEEEEESCHHHHHHHHTTSCCSEEEEESSCSSSCHHHHHHHHHHHCTTSEEEEEECGG
T ss_pred HHHHHHHHHHH---cCCeEEEeCCHHHHHHHHhcCCCCEEEEecCCCCCCHHHHHHHHHHhCCCCcEEEEecCC
Confidence 44455555543 343 23456788888888889999997766543444455555444 479998876443
No 86
>1knx_A Probable HPR(Ser) kinase/phosphatase; HPR kinase, HPR kinase/phosphatase, HPRK/P, P-loop, walker A BOX, catabolite repression; 2.50A {Mycoplasma pneumoniae} SCOP: c.98.2.1 c.91.1.2
Probab=34.58 E-value=29 Score=28.83 Aligned_cols=40 Identities=18% Similarity=0.358 Sum_probs=31.2
Q ss_pred HHHHHhcCCeeEEEEcCCCCchhhHHHHHHHHHhCCCCEEEeC
Q psy16564 59 AAKALDRREAQLCVLADNCDEPAYKKLVQALCSEHQIPLIKVD 101 (157)
Q Consensus 59 v~KaL~kgkakLVIlA~D~s~~~~~~~l~~lc~~~~Ipvi~v~ 101 (157)
.++.+-..+...+|++.+..++ ..+..+|++++||+....
T Consensus 75 ~~~~l~~~~iP~IIvtrg~~pp---~elie~A~e~~ipLl~T~ 114 (312)
T 1knx_A 75 ILHNLLKLNPPAIILTKSFTDP---TVLLQVNQTYQVPILKTD 114 (312)
T ss_dssp THHHHHTTCCSCEEEETTTCCC---HHHHHHGGGTCCCEEEES
T ss_pred HHHHHhCCCCCEEEEECCCCCC---HHHHHHHHHcCCEEEEeC
Confidence 4555656778899999997663 356789999999999876
No 87
>3ecd_A Serine hydroxymethyltransferase 2; ssgcid, decode, bupsa00008A, one-carbon metabolism, pyridoxa phosphate, structural genomics; 1.60A {Burkholderia pseudomallei}
Probab=34.57 E-value=35 Score=27.25 Aligned_cols=45 Identities=7% Similarity=-0.028 Sum_probs=28.1
Q ss_pred HHHHHHHhcCCeeEEEEcC-CCCchhhHHHHHHHHHhCCCCEEEeC
Q psy16564 57 HEAAKALDRREAQLCVLAD-NCDEPAYKKLVQALCSEHQIPLIKVD 101 (157)
Q Consensus 57 ~~v~KaL~kgkakLVIlA~-D~s~~~~~~~l~~lc~~~~Ipvi~v~ 101 (157)
....++|.+.+.++|++.. .-+.....+.|.++|+++|++++.=+
T Consensus 162 ~~l~~~i~~~~~~~v~~~~~~~~~~~~l~~i~~l~~~~~~~li~De 207 (425)
T 3ecd_A 162 DQVEALAQQHKPSLIIAGFSAYPRKLDFARFRAIADSVGAKLMVDM 207 (425)
T ss_dssp HHHHHHHHHHCCSEEEEECSCCCSCCCHHHHHHHHHHHTCEEEEEC
T ss_pred HHHHHHHhhcCCcEEEEccccCCCcCCHHHHHHHHHHcCCEEEEEC
Confidence 3444455434567777762 22222445678999999999887644
No 88
>3aq1_B Thermosome subunit; group II chaperonin, protein folding, chaperone; 2.75A {Methanococcoides burtonii}
Probab=34.33 E-value=62 Score=28.20 Aligned_cols=52 Identities=15% Similarity=0.201 Sum_probs=36.5
Q ss_pred HHHHHHHhcCCeeEEEEcCCCCchhhHHHHHHHHHhCCCCEEEeCCHH---HHHHHhCCC
Q psy16564 57 HEAAKALDRREAQLCVLADNCDEPAYKKLVQALCSEHQIPLIKVDNNK---KLGEWAGLS 113 (157)
Q Consensus 57 ~~v~KaL~kgkakLVIlA~D~s~~~~~~~l~~lc~~~~Ipvi~v~sk~---eLG~a~G~~ 113 (157)
...++.|.+-.+.+||++.|+++ ...+++.+++|-++.--.+. +|.+++|-.
T Consensus 228 ~~~le~I~~~g~~lvi~~~~I~~-----~al~~L~~~~I~av~~~~k~~le~ia~~tGa~ 282 (500)
T 3aq1_B 228 REMAEKVIASGANVVFCQKGIDD-----MAQYYIEKAGIYAVRRVKKSDLKRLSKVTGAT 282 (500)
T ss_dssp HHHHHHHHTTCCSEEEESSCBCH-----HHHHHHHHTTCEEECSCCHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHhCcCEEEECCCcCH-----HHHHHHHHCCEEEEEeCCHHHHHHHHHHhCCe
Confidence 45566777777999999999998 33445567888877654555 556667753
No 89
>3gbx_A Serine hydroxymethyltransferase; structural genomics, IDP01011, serine hydroxymethyltransfera salmonella typhimurium.; HET: MSE; 1.80A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1dfo_A* 3g8m_A* 1eqb_A*
Probab=34.22 E-value=42 Score=26.71 Aligned_cols=45 Identities=9% Similarity=-0.048 Sum_probs=28.7
Q ss_pred HHHHHHHhcCCeeEEEEcC-CCCchhhHHHHHHHHHhCCCCEEEeC
Q psy16564 57 HEAAKALDRREAQLCVLAD-NCDEPAYKKLVQALCSEHQIPLIKVD 101 (157)
Q Consensus 57 ~~v~KaL~kgkakLVIlA~-D~s~~~~~~~l~~lc~~~~Ipvi~v~ 101 (157)
.+..++|...+.++|++.. +.+-..-.+.|.++|++++++++.=+
T Consensus 159 ~~l~~~i~~~~~~~v~~~~~~~~~~~~l~~l~~l~~~~~~~li~De 204 (420)
T 3gbx_A 159 DEMAKLAKEHKPKMIIGGFSAYSGVVDWAKMREIADSIGAYLFVDM 204 (420)
T ss_dssp HHHHHHHHHHCCSEEEECCTTCCSCCCHHHHHHHHHHTTCEEEEEC
T ss_pred HHHHHHHHhcCCeEEEEecCccCCccCHHHHHHHHHHcCCEEEEEC
Confidence 4455556555578888843 22211235678899999999888644
No 90
>2a9o_A Response regulator; essential protein, YYCF/YYCG homolog, signaling protein; 1.65A {Streptococcus pneumoniae} SCOP: c.23.1.1 PDB: 1nxo_A 1nxs_A 1nxv_A 1nxw_A 1nxx_A 1nxp_A 2a9p_A 2a9q_A 1nxt_A* 2a9r_A*
Probab=33.87 E-value=73 Score=20.05 Aligned_cols=47 Identities=11% Similarity=0.197 Sum_probs=31.1
Q ss_pred eHHHHHHHHhcCCeeEEEEcCCCCchhhHHHHHHHHHhCCCCEEEeC
Q psy16564 55 GLHEAAKALDRREAQLCVLADNCDEPAYKKLVQALCSEHQIPLIKVD 101 (157)
Q Consensus 55 G~~~v~KaL~kgkakLVIlA~D~s~~~~~~~l~~lc~~~~Ipvi~v~ 101 (157)
...+.+..+......++|+--+-+..+-...+..+-+..++|++.+.
T Consensus 33 ~~~~a~~~~~~~~~dlvl~D~~l~~~~g~~~~~~l~~~~~~~ii~~s 79 (120)
T 2a9o_A 33 NGREALEQFEAEQPDIIILDLMLPEIDGLEVAKTIRKTSSVPILMLS 79 (120)
T ss_dssp SHHHHHHHHHHHCCSEEEECSSCSSSCHHHHHHHHHHHCCCCEEEEE
T ss_pred CHHHHHHHHHhCCCCEEEEeccCCCCCHHHHHHHHHhCCCCCEEEEe
Confidence 35677778887788899886655432333344444455789999875
No 91
>3iyg_A T-complex protein 1 subunit alpha; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus}
Probab=33.85 E-value=75 Score=27.89 Aligned_cols=50 Identities=12% Similarity=0.114 Sum_probs=34.1
Q ss_pred HHHHHHhcCCeeEEEEcCCCCchhhHHHHHHHHHhCCCCEEEeCC---HHHHHHHhCC
Q psy16564 58 EAAKALDRREAQLCVLADNCDEPAYKKLVQALCSEHQIPLIKVDN---NKKLGEWAGL 112 (157)
Q Consensus 58 ~v~KaL~kgkakLVIlA~D~s~~~~~~~l~~lc~~~~Ipvi~v~s---k~eLG~a~G~ 112 (157)
..++.|.+-.+.+||++.++++ ...+++.+++|.++.--. .++|.+++|-
T Consensus 267 ~~v~kI~~~g~nvvi~~~~I~d-----~al~~L~~~gI~av~~v~k~~leria~~tGa 319 (529)
T 3iyg_A 267 ERIQKILATGANVILTTGGIDD-----MCLKYFVEAGAMAVRRVLKRDLKRIAKASGA 319 (529)
T ss_pred HHHHHHHhcCCCEEEECCCCCH-----HHHHHHHHcCCceeccCCHHHHHHHHHHhCC
Confidence 3445555556889999999988 344566778898887544 4456666664
No 92
>3iyg_B T-complex protein 1 subunit beta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} PDB: 3ktt_B 4a0o_A 4a0v_A 4a0w_A 4a13_A
Probab=33.80 E-value=77 Score=27.72 Aligned_cols=49 Identities=8% Similarity=0.004 Sum_probs=34.1
Q ss_pred HHHHHhcCCeeEEEEcCCCCchhhHHHHHHHHHhCCCCEEEeCC---HHHHHHHhCC
Q psy16564 59 AAKALDRREAQLCVLADNCDEPAYKKLVQALCSEHQIPLIKVDN---NKKLGEWAGL 112 (157)
Q Consensus 59 v~KaL~kgkakLVIlA~D~s~~~~~~~l~~lc~~~~Ipvi~v~s---k~eLG~a~G~ 112 (157)
.++.|.+-.+.+||++.|+++. ..+++.+++|-++.-.. .++|.+++|-
T Consensus 265 ~le~I~~~g~~vvi~~~~I~~~-----al~~L~~~~I~av~~~~~~~le~ia~~tGa 316 (513)
T 3iyg_B 265 KVERILKHGINCFINRQLIYNY-----PEQLFGAAGVMAIEHADFVGVERLALVTGG 316 (513)
T ss_pred HHHHHHhcCCCEEEEcCCccHH-----HHHHHHHcCceEEecCCHHHHHHHHHHhCC
Confidence 4555666668999999999982 33455678998888554 4456666663
No 93
>3uhf_A Glutamate racemase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta sandwich fold, isomerase; HET: DGL; 1.83A {Campylobacter jejuni} PDB: 3uho_A* 3uhp_A
Probab=33.80 E-value=34 Score=27.71 Aligned_cols=39 Identities=23% Similarity=0.381 Sum_probs=29.2
Q ss_pred HHHHHhcCCeeEEEEcCCCCchhhHHHHHHHHHhCCCCEEEe
Q psy16564 59 AAKALDRREAQLCVLADNCDEPAYKKLVQALCSEHQIPLIKV 100 (157)
Q Consensus 59 v~KaL~kgkakLVIlA~D~s~~~~~~~l~~lc~~~~Ipvi~v 100 (157)
..+.|++..+++++||.|... .. .+..+-+..+||++-+
T Consensus 78 ~~~~L~~~g~d~IVIACNTa~-~~--al~~lr~~~~iPvigi 116 (274)
T 3uhf_A 78 ALDFFEQFQIDMLIIACNTAS-AY--ALDALRAKAHFPVYGV 116 (274)
T ss_dssp HHHHHTTSCCSEEEECCHHHH-HH--SHHHHHHHCSSCEECS
T ss_pred HHHHHHHCCCCEEEEeCCChh-HH--HHHHHHHhcCCCEEcC
Confidence 445778888999999999765 22 1456667789999974
No 94
>3qel_B Glutamate [NMDA] receptor subunit epsilon-2; ION channel, allosteric modulation, phenylethanolamine, N-glycosylation, extracellular; HET: NAG BMA MAN FUC QEL; 2.60A {Rattus norvegicus} PDB: 3qem_B* 3jpw_A* 3jpy_A*
Probab=33.79 E-value=75 Score=25.73 Aligned_cols=45 Identities=18% Similarity=0.375 Sum_probs=30.8
Q ss_pred HHHHHHHhcCCeeEEEEcCCCCchhhHHHHHHHHHhCCCCEEEeC
Q psy16564 57 HEAAKALDRREAQLCVLADNCDEPAYKKLVQALCSEHQIPLIKVD 101 (157)
Q Consensus 57 ~~v~KaL~kgkakLVIlA~D~s~~~~~~~l~~lc~~~~Ipvi~v~ 101 (157)
+.+.+.|..+++..||.....+.......+..+|..++||.+.+.
T Consensus 53 ~~~C~~l~~~~V~aiIgg~~s~~~a~a~~v~~i~~~~~iP~IS~~ 97 (364)
T 3qel_B 53 TRICDLMSDRKIQGVVFADDTDQEAIAQILDFISAQTLTPILGIH 97 (364)
T ss_dssp HHHHHHHHHSCEEEEEEEESSCCTHHHHHHHHHHHHHTCCEEEEE
T ss_pred HHHHHHHHhCCeEEEEecCCCCchHHHHHHHHHHhccCCCEEEee
Confidence 445556666777777665554442344557889999999999875
No 95
>3p9d_A T-complex protein 1 subunit alpha; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_a* 4d8q_A* 4d8r_a*
Probab=33.60 E-value=43 Score=29.76 Aligned_cols=51 Identities=16% Similarity=0.163 Sum_probs=34.6
Q ss_pred HHHHHHhcCCeeEEEEcCCCCchhhHHHHHHHHHhCCCCEEEeCCHH---HHHHHhCCC
Q psy16564 58 EAAKALDRREAQLCVLADNCDEPAYKKLVQALCSEHQIPLIKVDNNK---KLGEWAGLS 113 (157)
Q Consensus 58 ~v~KaL~kgkakLVIlA~D~s~~~~~~~l~~lc~~~~Ipvi~v~sk~---eLG~a~G~~ 113 (157)
..++.|.+-.+.+||++.|+++. ..+++..++|.++.--.+. +|.+++|-.
T Consensus 283 ~~le~I~~~g~~lvI~~~~I~~~-----al~~L~~~~I~av~~~~k~~le~ia~~TGa~ 336 (559)
T 3p9d_A 283 ERVKKIIDAGAQVVLTTKGIDDL-----CLKEFVEAKIMGVRRCKKEDLRRIARATGAT 336 (559)
T ss_dssp HHHHHHHTTCCSEEEESSCCCGG-----GTHHHHHTTCEEESSCCHHHHHHHHHHSSCC
T ss_pred HHHHHHHhhCCCEEEEcCCCCHH-----HHHHHHHcCCceEccCCHHHHHHHHHHhCCE
Confidence 34555556668999999999982 2345677899887644444 566667754
No 96
>3ist_A Glutamate racemase; structural genomics, cell WALL biogenesis/degradation, isomerase, peptidoglycan synthesis; HET: MSE; 1.65A {Listeria monocytogenes} PDB: 3hfr_A* 3isv_A*
Probab=33.55 E-value=42 Score=26.90 Aligned_cols=40 Identities=28% Similarity=0.321 Sum_probs=30.1
Q ss_pred HHHHHHhcCCeeEEEEcCCCCchhhHHHHHHHHHhCCCCEEEe
Q psy16564 58 EAAKALDRREAQLCVLADNCDEPAYKKLVQALCSEHQIPLIKV 100 (157)
Q Consensus 58 ~v~KaL~kgkakLVIlA~D~s~~~~~~~l~~lc~~~~Ipvi~v 100 (157)
+..+.|.+..+++++||.+... . ..+..+-+..+||++-+
T Consensus 58 ~~~~~L~~~g~~~IVIACNTa~-~--~al~~lr~~~~iPvigi 97 (269)
T 3ist_A 58 EMTNFLVDRGIKMLVIACNTAT-A--AALYDIREKLDIPVIGV 97 (269)
T ss_dssp HHHHHHHHTTCSEEEECCHHHH-H--HHHHHHHHHCSSCEEES
T ss_pred HHHHHHHHCCCCEEEEeCCCcc-H--HHHHHHHHhcCCCEEee
Confidence 3456777778999999998865 2 12566778889999984
No 97
>3zy2_A Putative GDP-fucose protein O-fucosyltransferase; glycosyltransferase, GT-B, catalytic mechanism,; HET: GDP; 1.54A {Caenorhabditis elegans} PDB: 3zy3_A* 3zy4_A* 3zy5_A* 3zy6_A*
Probab=33.45 E-value=31 Score=29.57 Aligned_cols=41 Identities=10% Similarity=0.074 Sum_probs=28.5
Q ss_pred HHHHHhcCCeeEEEEcCCCCchhhHHHHHHHHHhCCCCEEEeC
Q psy16564 59 AAKALDRREAQLCVLADNCDEPAYKKLVQALCSEHQIPLIKVD 101 (157)
Q Consensus 59 v~KaL~kgkakLVIlA~D~s~~~~~~~l~~lc~~~~Ipvi~v~ 101 (157)
+.+.+++-+++-|+||.|+++ . ...|..+=...+|+++...
T Consensus 271 Ik~~vk~~~lksVFIATDa~~-~-~~ELk~~L~~~~v~vv~~~ 311 (362)
T 3zy2_A 271 IVEKVGSIGAKSVFVASDKDH-M-IDEINEALKPYEIEAHRQE 311 (362)
T ss_dssp HHHHHHHHTCSEEEEEESSCC-C-HHHHHHHHGGGTCCEECCS
T ss_pred HHHHHHhcCCcEEEEecCCHH-H-HHHHHHHhhccCceEEEeC
Confidence 333444447999999999987 4 4556655555689988765
No 98
>1zgz_A Torcad operon transcriptional regulatory protein; two-component system, gene regulation, transcription factor, respiratory system; 1.80A {Escherichia coli} SCOP: c.23.1.1
Probab=33.18 E-value=63 Score=20.59 Aligned_cols=64 Identities=16% Similarity=0.119 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHhcCCc---eeeHHHHHHHHhcCCeeEEEEcCCCCchhhHHHHHHHHHhCCCCEEEeC
Q psy16564 35 INKALQQVLKTARAHDGL---AKGLHEAAKALDRREAQLCVLADNCDEPAYKKLVQALCSEHQIPLIKVD 101 (157)
Q Consensus 35 ~~k~L~~lL~~A~~agkl---v~G~~~v~KaL~kgkakLVIlA~D~s~~~~~~~l~~lc~~~~Ipvi~v~ 101 (157)
....+..+|.. .|.- .....+....+......+||+--+-+..+-...+..+.+...+|++.+.
T Consensus 14 ~~~~l~~~L~~---~~~~v~~~~~~~~~~~~~~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~ii~~s 80 (122)
T 1zgz_A 14 TQARLQSYFTQ---EGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENGLMLTRALRERSTVGIILVT 80 (122)
T ss_dssp HHHHHHHHHHH---TTCEEEEESSHHHHHHHHHHSCCSEEEEESCCSSSCHHHHHHHHHTTCCCEEEEEE
T ss_pred HHHHHHHHHHH---CCCeEEEecCHHHHHHHHhcCCCCEEEEeCCCCCCChHHHHHHHHhcCCCCEEEEE
Confidence 44455555543 2432 2345677778888888999887665543334444555445678988874
No 99
>3g0t_A Putative aminotransferase; NP_905498.1, putative aspartate aminotransferase, structural genomics, joint center for structural genomics; HET: MSE LLP PE4; 1.75A {Porphyromonas gingivalis}
Probab=33.13 E-value=84 Score=25.22 Aligned_cols=45 Identities=11% Similarity=0.198 Sum_probs=28.8
Q ss_pred HHHHHHHhcCCeeEEEEcCC------CCchhhHHHHHHHHHhCCCCEEEeC
Q psy16564 57 HEAAKALDRREAQLCVLADN------CDEPAYKKLVQALCSEHQIPLIKVD 101 (157)
Q Consensus 57 ~~v~KaL~kgkakLVIlA~D------~s~~~~~~~l~~lc~~~~Ipvi~v~ 101 (157)
....++|+..+.++|++..= +-+..-.+.|.++|+++++.++.=+
T Consensus 172 ~~l~~~l~~~~~~~v~l~~p~nptG~~~~~~~l~~i~~~a~~~~~~li~De 222 (437)
T 3g0t_A 172 EKLESYLQTGQFCSIIYSNPNNPTWQCMTDEELRIIGELATKHDVIVIEDL 222 (437)
T ss_dssp HHHHHHHTTTCCCEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEC
T ss_pred HHHHHHHhcCCceEEEEeCCCCCCCCcCCHHHHHHHHHHHHHCCcEEEEEc
Confidence 44555665667888877431 1122335667889999999888644
No 100
>1i4n_A Indole-3-glycerol phosphate synthase; thermostable TIM-barrel protein, salt bridges, electrostatic interactions, lyase; 2.50A {Thermotoga maritima} SCOP: c.1.2.4 PDB: 1j5t_A
Probab=32.92 E-value=1.6e+02 Score=23.37 Aligned_cols=72 Identities=13% Similarity=0.107 Sum_probs=47.9
Q ss_pred ceeeHHHHHHHHhcCCeeEEEEcCCCCchhhHHHHHHHHHhCCCC-EEEeCCHHHHHHHhCCCccccCCCccceeeeEEE
Q psy16564 52 LAKGLHEAAKALDRREAQLCVLADNCDEPAYKKLVQALCSEHQIP-LIKVDNNKKLGEWAGLSKLDNMGKARKVVGCSCV 130 (157)
Q Consensus 52 lv~G~~~v~KaL~kgkakLVIlA~D~s~~~~~~~l~~lc~~~~Ip-vi~v~sk~eLG~a~G~~~~~~~gk~rki~~~s~v 130 (157)
++-+. |+..+-..|---.++++.--++ .....+..+|++.|.. ++.+.+.+||-++.-.. ++..+
T Consensus 110 i~~~~-qi~ea~~~GAD~ilLi~a~l~~-~~l~~l~~~a~~lGl~~lvEv~~~eE~~~A~~l~------------g~~iI 175 (251)
T 1i4n_A 110 YIDTV-QVKLASSVGADAILIIARILTA-EQIKEIYEAAEELGMDSLVEVHSREDLEKVFSVI------------RPKII 175 (251)
T ss_dssp CCSTH-HHHHHHHTTCSEEEEEGGGSCH-HHHHHHHHHHHTTTCEEEEEECSHHHHHHHHTTC------------CCSEE
T ss_pred CCCHH-HHHHHHHcCCCEEEEecccCCH-HHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHhcC------------CCCEE
Confidence 33444 6666666676555666665565 4555677889988885 45588999999988640 23458
Q ss_pred EEecCch
Q psy16564 131 VIKVRNW 137 (157)
Q Consensus 131 aI~D~g~ 137 (157)
+|...+.
T Consensus 176 Ginnr~l 182 (251)
T 1i4n_A 176 GINTRDL 182 (251)
T ss_dssp EEECBCT
T ss_pred EEeCccc
Confidence 8887654
No 101
>3cg0_A Response regulator receiver modulated diguanylate with PAS/PAC sensor; signal receiver domain, diguanylate cyclase; 2.15A {Desulfovibrio desulfuricans subsp}
Probab=32.61 E-value=96 Score=20.15 Aligned_cols=75 Identities=9% Similarity=0.020 Sum_probs=45.5
Q ss_pred cHHHHHHHHHHHHHhcCCce----eeHHHHHHHHhcCCeeEEEEcCCCC-chhhHHHHHHHHHhCCCCEEEeC---CHHH
Q psy16564 34 DINKALQQVLKTARAHDGLA----KGLHEAAKALDRREAQLCVLADNCD-EPAYKKLVQALCSEHQIPLIKVD---NNKK 105 (157)
Q Consensus 34 ~~~k~L~~lL~~A~~agklv----~G~~~v~KaL~kgkakLVIlA~D~s-~~~~~~~l~~lc~~~~Ipvi~v~---sk~e 105 (157)
.....+..+|... |.-+ ....+.++.+......+||+--+.+ ..+-...+..+....++|++.+. +...
T Consensus 20 ~~~~~l~~~L~~~---g~~v~~~~~~~~~a~~~~~~~~~dlii~d~~~~~~~~g~~~~~~l~~~~~~~ii~ls~~~~~~~ 96 (140)
T 3cg0_A 20 LAAATLRIQLESL---GYDVLGVFDNGEEAVRCAPDLRPDIALVDIMLCGALDGVETAARLAAGCNLPIIFITSSQDVET 96 (140)
T ss_dssp HHHHHHHHHHHHH---TCEEEEEESSHHHHHHHHHHHCCSEEEEESSCCSSSCHHHHHHHHHHHSCCCEEEEECCCCHHH
T ss_pred HHHHHHHHHHHHC---CCeeEEEECCHHHHHHHHHhCCCCEEEEecCCCCCCCHHHHHHHHHhCCCCCEEEEecCCCHHH
Confidence 3455666666642 5433 3467888888888899999986654 22333444444444789999875 3334
Q ss_pred HHHHhC
Q psy16564 106 LGEWAG 111 (157)
Q Consensus 106 LG~a~G 111 (157)
.-+++.
T Consensus 97 ~~~~~~ 102 (140)
T 3cg0_A 97 FQRAKR 102 (140)
T ss_dssp HHHHHT
T ss_pred HHHHHh
Confidence 444443
No 102
>2qr3_A Two-component system response regulator; structural genomics, signal receiver, PSI-2, protein structu initiative; 1.80A {Bacteroides fragilis}
Probab=32.60 E-value=71 Score=20.82 Aligned_cols=50 Identities=8% Similarity=0.117 Sum_probs=33.4
Q ss_pred eeeHHHHHHHHhcCCeeEEEEcCCCC-----chhhHHHHHHHHHh-CCCCEEEeCC
Q psy16564 53 AKGLHEAAKALDRREAQLCVLADNCD-----EPAYKKLVQALCSE-HQIPLIKVDN 102 (157)
Q Consensus 53 v~G~~~v~KaL~kgkakLVIlA~D~s-----~~~~~~~l~~lc~~-~~Ipvi~v~s 102 (157)
.....+.++.+......+||+--+.+ ..+-...+..+-.. .++|++.+.+
T Consensus 33 ~~~~~~a~~~l~~~~~dlvi~d~~~~~~~~~~~~g~~~~~~l~~~~~~~~ii~ls~ 88 (140)
T 2qr3_A 33 LSSPVSLSTVLREENPEVVLLDMNFTSGINNGNEGLFWLHEIKRQYRDLPVVLFTA 88 (140)
T ss_dssp ECCHHHHHHHHHHSCEEEEEEETTTTC-----CCHHHHHHHHHHHCTTCCEEEEEE
T ss_pred eCCHHHHHHHHHcCCCCEEEEeCCcCCCCCCCccHHHHHHHHHhhCcCCCEEEEEC
Confidence 34567888888888899999976654 32333444444443 5799998763
No 103
>4fo4_A Inosine 5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.03A {Vibrio cholerae o1 biovar el tor} PDB: 4ff0_A* 4hlv_A* 4fez_A
Probab=32.60 E-value=2.2e+02 Score=23.81 Aligned_cols=76 Identities=13% Similarity=0.189 Sum_probs=43.3
Q ss_pred ccHHHHHHHHHHHHHhcCCceeeH--------HHHHHHHhcCCeeEEEE-cCCCCchhhHHHHHHHHHhC-CCCEEE--e
Q psy16564 33 SDINKALQQVLKTARAHDGLAKGL--------HEAAKALDRREAQLCVL-ADNCDEPAYKKLVQALCSEH-QIPLIK--V 100 (157)
Q Consensus 33 m~~~k~L~~lL~~A~~agklv~G~--------~~v~KaL~kgkakLVIl-A~D~s~~~~~~~l~~lc~~~-~Ipvi~--v 100 (157)
|+.++.. +.+...++.+.+..|. .+..+++..-.+.+|+| +....+......+..+++.+ ++|++. +
T Consensus 79 ~s~e~~~-~~i~~vk~~~~l~vga~vg~~~~~~~~~~~lieaGvd~I~idta~G~~~~~~~~I~~ik~~~p~v~Vi~G~v 157 (366)
T 4fo4_A 79 MSIEQQA-AQVHQVKISGGLRVGAAVGAAPGNEERVKALVEAGVDVLLIDSSHGHSEGVLQRIRETRAAYPHLEIIGGNV 157 (366)
T ss_dssp SCHHHHH-HHHHHHHTTTSCCCEEECCSCTTCHHHHHHHHHTTCSEEEEECSCTTSHHHHHHHHHHHHHCTTCEEEEEEE
T ss_pred CCHHHHH-HHHHHHHhcCceeEEEEeccChhHHHHHHHHHhCCCCEEEEeCCCCCCHHHHHHHHHHHHhcCCCceEeeee
Confidence 3444444 6666666666543332 34445554445777766 33333435666677777776 888864 6
Q ss_pred CCHHHHHHH
Q psy16564 101 DNNKKLGEW 109 (157)
Q Consensus 101 ~sk~eLG~a 109 (157)
.+.++.-++
T Consensus 158 ~t~e~A~~a 166 (366)
T 4fo4_A 158 ATAEGARAL 166 (366)
T ss_dssp CSHHHHHHH
T ss_pred CCHHHHHHH
Confidence 666655444
No 104
>3p9d_D T-complex protein 1 subunit delta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_d* 4d8q_D* 4d8r_d*
Probab=32.05 E-value=82 Score=27.68 Aligned_cols=50 Identities=14% Similarity=0.217 Sum_probs=35.1
Q ss_pred HHHHHhcCCeeEEEEcCCC-----CchhhHHHHHHHHHhCCCCEEEeCCH---HHHHHHhCCC
Q psy16564 59 AAKALDRREAQLCVLADNC-----DEPAYKKLVQALCSEHQIPLIKVDNN---KKLGEWAGLS 113 (157)
Q Consensus 59 v~KaL~kgkakLVIlA~D~-----s~~~~~~~l~~lc~~~~Ipvi~v~sk---~eLG~a~G~~ 113 (157)
.++.|.+-.+.+||++.|+ ++ ...+++.+++|.++.--.+ ++|.+++|-.
T Consensus 274 ~le~I~~~g~~vvi~~~~I~~~a~~~-----~al~~L~~~~I~av~~~~k~~le~ia~~tGa~ 331 (528)
T 3p9d_D 274 ICKKIKKAKCNVLLIQKSILRDAVND-----LALHFLSKLNIMVVKDIEREEIEFLSKGLGCK 331 (528)
T ss_dssp HHHHHHHTTCCEEEESSCSCTTSCSC-----HHHHHHTTTSCCEEECCCTHHHHHHHHHHTCC
T ss_pred HHHHHHhcCCCEEEEeCCcccccCCH-----HHHHHHHHcCcEEEEeCCHHHHHHHHHHHCCE
Confidence 3445555568899999999 77 3445567889999985544 4666777754
No 105
>2lnd_A De novo designed protein, PFK fold; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=31.76 E-value=1.3e+02 Score=20.83 Aligned_cols=55 Identities=9% Similarity=0.165 Sum_probs=39.9
Q ss_pred eHHHHHHHHhcCCeeEEEEcCCCCchhhHHHHHHHHHhCCCCEEEeC--CHHHHHHHh
Q psy16564 55 GLHEAAKALDRREAQLCVLADNCDEPAYKKLVQALCSEHQIPLIKVD--NNKKLGEWA 110 (157)
Q Consensus 55 G~~~v~KaL~kgkakLVIlA~D~s~~~~~~~l~~lc~~~~Ipvi~v~--sk~eLG~a~ 110 (157)
.++..++.++.+--.||+...-++. +-...++.-+++.+|.+-... +.++|-+-+
T Consensus 39 dirdiiksmkdngkplvvfvngasq-ndvnefqneakkegvsydvlkstdpeeltqrv 95 (112)
T 2lnd_A 39 DIRDIIKSMKDNGKPLVVFVNGASQ-NDVNEFQNEAKKEGVSYDVLKSTDPEELTQRV 95 (112)
T ss_dssp HHHHHHHHHTTCCSCEEEEECSCCH-HHHHHHHHHHHHHTCEEEEEECCCHHHHHHHH
T ss_pred hHHHHHHHHHhcCCeEEEEecCccc-ccHHHHHHHHHhcCcchhhhccCCHHHHHHHH
Confidence 3566777787666667777788888 566678888999999876655 677776544
No 106
>3dnf_A ISPH, LYTB, 4-hydroxy-3-methylbut-2-ENYL diphosphate reductas; trilobal strucure, open alpha/beta, iron, iron-sulfur, isopr biosynthesis; 1.65A {Aquifex aeolicus}
Probab=31.60 E-value=68 Score=26.61 Aligned_cols=50 Identities=12% Similarity=0.211 Sum_probs=35.4
Q ss_pred HHHHHHHhcCCeeEEEEcCCCCchhhHHHHHHHHHhCCCCEEEeCCHHHHHH
Q psy16564 57 HEAAKALDRREAQLCVLADNCDEPAYKKLVQALCSEHQIPLIKVDNNKKLGE 108 (157)
Q Consensus 57 ~~v~KaL~kgkakLVIlA~D~s~~~~~~~l~~lc~~~~Ipvi~v~sk~eLG~ 108 (157)
.+..+.|.+ ++-++|+-.+-.. .-..+|...|++.+.|.+.+++-.+|-.
T Consensus 200 Q~av~~la~-~~D~miVVGg~nS-SNT~rL~eia~~~~~~ty~Ie~~~el~~ 249 (297)
T 3dnf_A 200 QESVKKLAP-EVDVMIIIGGKNS-GNTRRLYYISKELNPNTYHIETAEELQP 249 (297)
T ss_dssp HHHHHHHGG-GSSEEEEESCTTC-HHHHHHHHHHHHHCSSEEEESSGGGCCG
T ss_pred HHHHHHHHh-hCCEEEEECCCCC-chhHHHHHHHHhcCCCEEEeCChHHCCH
Confidence 344555554 4666666666554 3455678999999999999999998853
No 107
>3c01_E Surface presentation of antigens protein SPAS; auto cleavage protein, flagella, ESCU, YSCU, intein, T3SS, M inner membrane, transmembrane; 2.60A {Salmonella typhimurium} SCOP: d.367.1.1
Probab=31.56 E-value=20 Score=25.09 Aligned_cols=34 Identities=18% Similarity=0.066 Sum_probs=24.0
Q ss_pred EcCCCCchhhHHHHHHHHHhCCCCEEEeCCHHHHHHHhC
Q psy16564 73 LADNCDEPAYKKLVQALCSEHQIPLIKVDNNKKLGEWAG 111 (157)
Q Consensus 73 lA~D~s~~~~~~~l~~lc~~~~Ipvi~v~sk~eLG~a~G 111 (157)
+|.=.+ .+...|..+++++|||++.- ..|.+++-
T Consensus 21 vAKG~~--~~A~~I~e~A~e~gVPi~e~---~~LAr~Ly 54 (98)
T 3c01_E 21 SVYETN--QRALAVRAYAEKVGVPVIVD---IKLARSLF 54 (98)
T ss_dssp EEEEEH--HHHHHHHHHHHHHTCCEEEC---HHHHHHHH
T ss_pred EEEeCc--HHHHHHHHHHHHcCCCeecC---HHHHHHHH
Confidence 555444 37788999999999999853 34555554
No 108
>2l2q_A PTS system, cellobiose-specific IIB component (CE; cellobiose-specific phosphotransferase IIB component, struct genomics; NMR {Borrelia burgdorferi}
Probab=31.41 E-value=65 Score=21.89 Aligned_cols=47 Identities=15% Similarity=0.195 Sum_probs=34.6
Q ss_pred eeeHHHHHHHHhcCCeeEEEEcCCCCchhhHHHHHHHHHhCCCCEEEeCCH
Q psy16564 53 AKGLHEAAKALDRREAQLCVLADNCDEPAYKKLVQALCSEHQIPLIKVDNN 103 (157)
Q Consensus 53 v~G~~~v~KaL~kgkakLVIlA~D~s~~~~~~~l~~lc~~~~Ipvi~v~sk 103 (157)
..+..+....+ ..+-+||++.+... . ...+...|..+++|++.+...
T Consensus 39 ~~~~~~~~~~~--~~~D~Ii~t~~l~~-~-~~~~~~~~~~~~~pv~~I~~~ 85 (109)
T 2l2q_A 39 AIAETRLSEVV--DRFDVVLLAPQSRF-N-KKRLEEITKPKGIPIEIINTI 85 (109)
T ss_dssp EECSTTHHHHT--TTCSEEEECSCCSS-H-HHHHHHHHHHHTCCEEECCHH
T ss_pred EecHHHHHhhc--CCCCEEEECCccHH-H-HHHHHHHhcccCCCEEEEChH
Confidence 33555555443 56899999999977 3 667888888899999987743
No 109
>1jkx_A GART;, phosphoribosylglycinamide formyltransferase; purine biosynthesis, anti-cancer agent; HET: 138; 1.60A {Escherichia coli} SCOP: c.65.1.1 PDB: 1cdd_A 1cde_A* 1c2t_A* 1grc_A 1gar_A* 2gar_A 3gar_A 1c3e_A*
Probab=31.41 E-value=76 Score=24.49 Aligned_cols=42 Identities=12% Similarity=0.056 Sum_probs=26.2
Q ss_pred HHHHHHHHhcCC--eeEEEEcCCCCchhhHHHHHHHHHhCCCCEEEeC
Q psy16564 56 LHEAAKALDRRE--AQLCVLADNCDEPAYKKLVQALCSEHQIPLIKVD 101 (157)
Q Consensus 56 ~~~v~KaL~kgk--akLVIlA~D~s~~~~~~~l~~lc~~~~Ipvi~v~ 101 (157)
....+++++++. ...+.+-.|-+. . ....+|+++|||++.+.
T Consensus 14 l~ali~~~~~~~~~~~i~~Vis~~~~-~---~~~~~A~~~gIp~~~~~ 57 (212)
T 1jkx_A 14 LQAIIDACKTNKIKGTVRAVFSNKAD-A---FGLERARQAGIATHTLI 57 (212)
T ss_dssp HHHHHHHHHTTSSSSEEEEEEESCTT-C---HHHHHHHHTTCEEEECC
T ss_pred HHHHHHHHHcCCCCceEEEEEeCCCc-h---HHHHHHHHcCCcEEEeC
Confidence 344566666664 445444444332 1 24678999999999875
No 110
>1a6d_B Thermosome (beta subunit); group II chaperonin, CCT, TRIC, PR folding, ATPase, chaperonin; 2.60A {Thermoplasma acidophilum} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1a6e_B* 1e0r_B
Probab=31.38 E-value=68 Score=28.24 Aligned_cols=50 Identities=18% Similarity=0.234 Sum_probs=34.3
Q ss_pred HHHHHHhcCCeeEEEEcCCCCchhhHHHHHHHHHhCCCCEEEeCCHH---HHHHHhCC
Q psy16564 58 EAAKALDRREAQLCVLADNCDEPAYKKLVQALCSEHQIPLIKVDNNK---KLGEWAGL 112 (157)
Q Consensus 58 ~v~KaL~kgkakLVIlA~D~s~~~~~~~l~~lc~~~~Ipvi~v~sk~---eLG~a~G~ 112 (157)
..++.|.+-.+.+||++.|+++ ...+++.+++|-++.--.+. +|.+++|-
T Consensus 276 ~~le~I~~~g~~lvi~~~~I~~-----~al~~L~~~~I~av~~v~k~~le~ia~~tGa 328 (543)
T 1a6d_B 276 EMVDKIKSVGANVVITQKGIDD-----MAQHYLSRAGIYAVRRVKKSDMDKLAKATGA 328 (543)
T ss_dssp HHHHHHHHTTCCEEEESSCBCH-----HHHHHHHHTTCEEECSCCHHHHHHHHHHHTC
T ss_pred HHHHHHHHcCCCEEEECCCcCH-----HHHHHHHHCCeeEeccCCHHHHHHHHHHhCC
Confidence 4455666666889999999998 23445567888777644554 55666664
No 111
>3psh_A Protein HI_1472; substrate binding protein, periplasmic binding protein, MOLY binding protein, metal transport; 1.50A {Haemophilus influenzae} PDB: 3psa_A
Probab=31.37 E-value=80 Score=24.83 Aligned_cols=37 Identities=14% Similarity=0.289 Sum_probs=22.4
Q ss_pred HHHHhcCCeeEEEEcCCCCchhhHHHHHHHHHhCCCCEEEeC
Q psy16564 60 AKALDRREAQLCVLADNCDEPAYKKLVQALCSEHQIPLIKVD 101 (157)
Q Consensus 60 ~KaL~kgkakLVIlA~D~s~~~~~~~l~~lc~~~~Ipvi~v~ 101 (157)
.+.|..=+.-|||.....++ .....| ++.|||++.+.
T Consensus 77 ~E~i~~l~PDlIi~~~~~~~-~~~~~L----~~~Gipvv~~~ 113 (326)
T 3psh_A 77 IESLLALKPDVVFVTNYAPS-EMIKQI----SDVNIPVVAIS 113 (326)
T ss_dssp HHHHHHTCCSEEEEETTCCH-HHHHHH----HTTTCCEEEEC
T ss_pred HHHHHccCCCEEEEeCCCCh-HHHHHH----HHcCCCEEEEe
Confidence 34444556678877654433 333332 57799999986
No 112
>3cnb_A DNA-binding response regulator, MERR family; signal receiver domain, DNA binding protein, protein structu initiative, PSI-2; 2.00A {Colwellia psychrerythraea}
Probab=31.24 E-value=72 Score=20.82 Aligned_cols=65 Identities=15% Similarity=0.073 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHHhcCCc----eeeHHHHHHHHhcCCeeEEEEcCCCCchhhHHHHHHHHH---hCCCCEEEeC
Q psy16564 35 INKALQQVLKTARAHDGL----AKGLHEAAKALDRREAQLCVLADNCDEPAYKKLVQALCS---EHQIPLIKVD 101 (157)
Q Consensus 35 ~~k~L~~lL~~A~~agkl----v~G~~~v~KaL~kgkakLVIlA~D~s~~~~~~~l~~lc~---~~~Ipvi~v~ 101 (157)
....+..+|... .|.- .....+.+..+......+||+--+.+..+-...+..+.+ ..++|++.+.
T Consensus 20 ~~~~l~~~L~~~--~~~~~v~~~~~~~~a~~~l~~~~~dlii~d~~l~~~~g~~~~~~l~~~~~~~~~~ii~~s 91 (143)
T 3cnb_A 20 FADMLTQFLENL--FPYAKIKIAYNPFDAGDLLHTVKPDVVMLDLMMVGMDGFSICHRIKSTPATANIIVIAMT 91 (143)
T ss_dssp HHHHHHHHHHHH--CTTCEEEEECSHHHHHHHHHHTCCSEEEEETTCTTSCHHHHHHHHHTSTTTTTSEEEEEE
T ss_pred HHHHHHHHHHhc--cCccEEEEECCHHHHHHHHHhcCCCEEEEecccCCCcHHHHHHHHHhCccccCCcEEEEe
Confidence 444555555542 2332 345678888888888999999876654334444555544 3678998875
No 113
>3s81_A Putative aspartate racemase; structural genomics, center for structural genomics of infec diseases, csgid, alpha beta fold, cytosol; 1.80A {Salmonella enterica subsp} PDB: 3s7z_A
Probab=30.91 E-value=35 Score=27.35 Aligned_cols=43 Identities=16% Similarity=0.162 Sum_probs=32.5
Q ss_pred eeHHHHHHHHhcCCeeEEEEcCCCCchhhHHHHHHHHHhCCCCEEEe
Q psy16564 54 KGLHEAAKALDRREAQLCVLADNCDEPAYKKLVQALCSEHQIPLIKV 100 (157)
Q Consensus 54 ~G~~~v~KaL~kgkakLVIlA~D~s~~~~~~~l~~lc~~~~Ipvi~v 100 (157)
-...+..+.|++..+.+++||.+... . .+..+-+..+||++-+
T Consensus 86 ~~l~~~~~~L~~~Gad~IVIaCNTah-~---~l~~lr~~~~iPvigi 128 (268)
T 3s81_A 86 RYLERYLHMLEDAGAECIVIPCNTAH-Y---WFDDLQNVAKARMISI 128 (268)
T ss_dssp HHHHHHHHHHHHTTCSEEECSCSGGG-G---GHHHHHHHCSSEEECH
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCCHH-H---HHHHHHHHCCCCEEcc
Confidence 33456667788888999999999865 2 3566667889999864
No 114
>1qkk_A DCTD, C4-dicarboxylate transport transcriptional regulatory protein; receiver domain, 2-component signal transduction; 1.7A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1l5z_A 1l5y_A
Probab=30.85 E-value=85 Score=21.09 Aligned_cols=68 Identities=21% Similarity=0.173 Sum_probs=41.3
Q ss_pred cHHHHHHHHHHHHHhcCCce---eeHHHHHHHHhcCCeeEEEEcCCCCchhhHHHHHHHHHh-CCCCEEEeCCHH
Q psy16564 34 DINKALQQVLKTARAHDGLA---KGLHEAAKALDRREAQLCVLADNCDEPAYKKLVQALCSE-HQIPLIKVDNNK 104 (157)
Q Consensus 34 ~~~k~L~~lL~~A~~agklv---~G~~~v~KaL~kgkakLVIlA~D~s~~~~~~~l~~lc~~-~~Ipvi~v~sk~ 104 (157)
.....+..+|.. .|.-+ ....+++..+......+||+--+.+...-...+..+... .++|++.+.+..
T Consensus 14 ~~~~~l~~~L~~---~g~~v~~~~~~~~a~~~l~~~~~dliild~~l~~~~g~~~~~~l~~~~~~~pii~ls~~~ 85 (155)
T 1qkk_A 14 DLRKAMQQTLEL---AGFTVSSFASATEALAGLSADFAGIVISDIRMPGMDGLALFRKILALDPDLPMILVTGHG 85 (155)
T ss_dssp HHHHHHHHHHHH---TTCEEEEESCHHHHHHTCCTTCCSEEEEESCCSSSCHHHHHHHHHHHCTTSCEEEEECGG
T ss_pred HHHHHHHHHHHH---cCcEEEEECCHHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHhhCCCCCEEEEECCC
Confidence 344555566653 34433 345667777777888999998766543334444544444 479999886433
No 115
>3cg4_A Response regulator receiver domain protein (CHEY-; structural genomics, unknown function; HET: MSE; 1.61A {Methanospirillum hungatei jf-1}
Probab=30.82 E-value=83 Score=20.59 Aligned_cols=66 Identities=14% Similarity=0.111 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHHhcCC---ceeeHHHHHHHHhcCCeeEEEEcCCCCchhhHHHHHHHHH---hCCCCEEEeCCH
Q psy16564 35 INKALQQVLKTARAHDG---LAKGLHEAAKALDRREAQLCVLADNCDEPAYKKLVQALCS---EHQIPLIKVDNN 103 (157)
Q Consensus 35 ~~k~L~~lL~~A~~agk---lv~G~~~v~KaL~kgkakLVIlA~D~s~~~~~~~l~~lc~---~~~Ipvi~v~sk 103 (157)
....|..+|... |. ......++++.++.....+||+--+.+..+-...+..+.+ ..++|++.+.+.
T Consensus 19 ~~~~l~~~L~~~---g~~v~~~~~~~~a~~~l~~~~~dlii~d~~l~~~~g~~~~~~l~~~~~~~~~pii~~s~~ 90 (142)
T 3cg4_A 19 VRIAVKTILSDA---GFHIISADSGGQCIDLLKKGFSGVVLLDIMMPGMDGWDTIRAILDNSLEQGIAIVMLTAK 90 (142)
T ss_dssp HHHHHHHHHHHT---TCEEEEESSHHHHHHHHHTCCCEEEEEESCCSSSCHHHHHHHHHHTTCCTTEEEEEEECT
T ss_pred HHHHHHHHHHHC---CeEEEEeCCHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHhhcccCCCCEEEEECC
Confidence 445555555542 43 2334578888888888999999876654334445555544 357899887643
No 116
>3iyg_E T-complex protein 1 subunit; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus}
Probab=30.74 E-value=99 Score=26.98 Aligned_cols=49 Identities=14% Similarity=0.163 Sum_probs=33.1
Q ss_pred HHHHHhcCCeeEEEEcCCCCchhhHHHHHHHHHhCCCCEEEeCCHH---HHHHHhCC
Q psy16564 59 AAKALDRREAQLCVLADNCDEPAYKKLVQALCSEHQIPLIKVDNNK---KLGEWAGL 112 (157)
Q Consensus 59 v~KaL~kgkakLVIlA~D~s~~~~~~~l~~lc~~~~Ipvi~v~sk~---eLG~a~G~ 112 (157)
.++.|.+-.+.+||++.|+++ ...++..+++|.++.--.+. +|.+++|-
T Consensus 266 ~lekI~~~g~~vvi~~~~I~~-----~al~~L~~~~I~~v~~v~k~~le~ia~~tGa 317 (515)
T 3iyg_E 266 MIRQIKETGANLAVCQWGFDD-----EANHLLLQNDLPAVRWVGGPEIELIAIATGG 317 (515)
T ss_pred HHHHHHhcCCCEEEEeCCCCH-----HHHHHHHHCCCEEEeccCHHHHHHHHHHhCC
Confidence 445555556889999999998 23445567889887755444 55566663
No 117
>2rdm_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.76A {Sinorhizobium medicae}
Probab=30.71 E-value=1.1e+02 Score=19.65 Aligned_cols=64 Identities=11% Similarity=0.071 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHhcCCce---eeHHHHHHHHhcC-CeeEEEEcCCCCc-hhhHHHHHHHHHh-CCCCEEEeC
Q psy16564 35 INKALQQVLKTARAHDGLA---KGLHEAAKALDRR-EAQLCVLADNCDE-PAYKKLVQALCSE-HQIPLIKVD 101 (157)
Q Consensus 35 ~~k~L~~lL~~A~~agklv---~G~~~v~KaL~kg-kakLVIlA~D~s~-~~~~~~l~~lc~~-~~Ipvi~v~ 101 (157)
....+..+|.. .|.-+ .-..+++..+... ...+||+--+.+. ..-...+..+.+. .++|++.+.
T Consensus 17 ~~~~l~~~L~~---~g~~v~~~~~~~~a~~~l~~~~~~dlvi~d~~l~~~~~g~~~~~~l~~~~~~~~ii~~s 86 (132)
T 2rdm_A 17 LLLDFESTLTD---AGFLVTAVSSGAKAIEMLKSGAAIDGVVTDIRFCQPPDGWQVARVAREIDPNMPIVYIS 86 (132)
T ss_dssp HHHHHHHHHHH---TTCEEEEESSHHHHHHHHHTTCCCCEEEEESCCSSSSCHHHHHHHHHHHCTTCCEEEEE
T ss_pred HHHHHHHHHHH---cCCEEEEECCHHHHHHHHHcCCCCCEEEEeeeCCCCCCHHHHHHHHHhcCCCCCEEEEe
Confidence 44455555553 34333 3356777788887 8899998766543 2334444544444 479999875
No 118
>3hp4_A GDSL-esterase; psychrotrophic, monoethylphosphonate, hydrolase; HET: MIR; 1.35A {Pseudoalteromonas SP} SCOP: c.23.10.0
Probab=30.45 E-value=95 Score=21.55 Aligned_cols=44 Identities=7% Similarity=0.055 Sum_probs=28.4
Q ss_pred HHHHHHhcCCeeEEEEcCCCCc-------hhhHHHHHHHHHhCCCCEEEeC
Q psy16564 58 EAAKALDRREAQLCVLADNCDE-------PAYKKLVQALCSEHQIPLIKVD 101 (157)
Q Consensus 58 ~v~KaL~kgkakLVIlA~D~s~-------~~~~~~l~~lc~~~~Ipvi~v~ 101 (157)
+.++.++...++.+++.--.++ ..+...+.++|+++++|++-+.
T Consensus 94 ~~i~~~~~~~~~vvl~~~~~p~~~~~~~~~~~~~~~~~~a~~~~~~~vd~~ 144 (185)
T 3hp4_A 94 ALVKKSQAANAMTALMEIYIPPNYGPRYSKMFTSSFTQISEDTNAHLMNFF 144 (185)
T ss_dssp HHHHHHHHTTCEEEEECCCCCSTTCHHHHHHHHHHHHHHHHHHCCEEECCT
T ss_pred HHHHHHHHcCCeEEEEeCCCCCcccHHHHHHHHHHHHHHHHHcCCEEEcch
Confidence 3445555556777777532222 1356778889999999988665
No 119
>1a6d_A Thermosome (alpha subunit); group II chaperonin, CCT, TRIC, PR folding, ATPase, chaperonin; 2.60A {Thermoplasma acidophilum} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1a6e_A*
Probab=30.33 E-value=62 Score=28.57 Aligned_cols=50 Identities=14% Similarity=0.246 Sum_probs=33.9
Q ss_pred HHHHHHhcCCeeEEEEcCCCCchhhHHHHHHHHHhCCCCEEEeCCHH---HHHHHhCC
Q psy16564 58 EAAKALDRREAQLCVLADNCDEPAYKKLVQALCSEHQIPLIKVDNNK---KLGEWAGL 112 (157)
Q Consensus 58 ~v~KaL~kgkakLVIlA~D~s~~~~~~~l~~lc~~~~Ipvi~v~sk~---eLG~a~G~ 112 (157)
..++.|.+-.+.+||++.|+++ ...+++.+++|-++.--.+. +|.+++|-
T Consensus 275 ~~le~I~~~g~~lvi~~~~I~~-----~al~~L~~~~I~av~~~~k~~le~ia~~tGa 327 (545)
T 1a6d_A 275 QMVEKIKKSGANVVLCQKGIDD-----VAQHYLAKEGIYAVRRVKKSDMEKLAKATGA 327 (545)
T ss_dssp HHHHHHHHTTCCEEEESSCBCH-----HHHHHHHHHTCEEECSCCHHHHHHHHHHHCC
T ss_pred HHHHHHHHhCCCEEEECCCccH-----HHHHHHHHCCeeEeccCCHHHHHHHHHHhCC
Confidence 4455666666899999999998 23345556788777644555 55666664
No 120
>1wn2_A Peptidyl-tRNA hydrolase; riken structural genomics/proteomics initiative, structural genomics; 1.20A {Pyrococcus horikoshii} PDB: 2d3k_A
Probab=30.17 E-value=1.5e+02 Score=21.00 Aligned_cols=68 Identities=10% Similarity=0.076 Sum_probs=42.4
Q ss_pred HHHHHHHhcCCeeEEEEcCCCCchhhHHHHHHHHHhCCCCEEEeCCHHHHHHHhCCCccccCCCccceeeeEEEEEecCc
Q psy16564 57 HEAAKALDRREAQLCVLADNCDEPAYKKLVQALCSEHQIPLIKVDNNKKLGEWAGLSKLDNMGKARKVVGCSCVVIKVRN 136 (157)
Q Consensus 57 ~~v~KaL~kgkakLVIlA~D~s~~~~~~~l~~lc~~~~Ipvi~v~sk~eLG~a~G~~~~~~~gk~rki~~~s~vaI~D~g 136 (157)
.........|..+.|+=+.|.++ +. .+...+++.|+|...+-+. |..... | -...|++| -|+
T Consensus 45 ~~~~~W~~~g~~Kvvlk~~~e~e--l~-~l~~~a~~~gl~~~~i~DA-------G~Tei~----~---gt~Tvlai-gP~ 106 (121)
T 1wn2_A 45 EWFEAWFREGQKKVVVKVESEEE--LF-KLKAEAEKLGLPNALIRDA-------GLTEIP----P---GTVTVLAV-GPA 106 (121)
T ss_dssp HHHHHHHHTTCCEEEEEESSHHH--HH-HHHHHHHHTTCCEEEEECT-------TCTTSC----T---TCEEEEEE-EEE
T ss_pred HHHHHHHHCCCcEEEEecCCHHH--HH-HHHHHHHHCCCCEEEEEcC-------CccccC----C---CCEEEEEe-ccC
Confidence 34445556788888888877544 33 4677788999998777543 432221 1 13467888 466
Q ss_pred hhHHhh
Q psy16564 137 WFLIIC 142 (157)
Q Consensus 137 ~~~~~~ 142 (157)
..+.+.
T Consensus 107 ~~~~vd 112 (121)
T 1wn2_A 107 PEEIVD 112 (121)
T ss_dssp EHHHHH
T ss_pred CHHHHH
Confidence 555443
No 121
>2zay_A Response regulator receiver protein; structural genomics, NYSGXRC, target 11006U, protein structure initiative; 2.00A {Desulfuromonas acetoxidans}
Probab=30.14 E-value=79 Score=20.93 Aligned_cols=64 Identities=17% Similarity=0.114 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHhcCC---ceeeHHHHHHHHhcCCeeEEEEcCCCCchhhHHHHHHHHH---hCCCCEEEeC
Q psy16564 35 INKALQQVLKTARAHDG---LAKGLHEAAKALDRREAQLCVLADNCDEPAYKKLVQALCS---EHQIPLIKVD 101 (157)
Q Consensus 35 ~~k~L~~lL~~A~~agk---lv~G~~~v~KaL~kgkakLVIlA~D~s~~~~~~~l~~lc~---~~~Ipvi~v~ 101 (157)
....+..+|... |. ......+.++.+......+||+--+.+..+-...+..+.+ ..++|++.+.
T Consensus 20 ~~~~l~~~L~~~---g~~v~~~~~~~~a~~~l~~~~~dlii~d~~l~~~~g~~~~~~l~~~~~~~~~pii~ls 89 (147)
T 2zay_A 20 ALAASISALSQE---GFDIIQCGNAIEAVPVAVKTHPHLIITEANMPKISGMDLFNSLKKNPQTASIPVIALS 89 (147)
T ss_dssp GGHHHHHHHHHH---TEEEEEESSHHHHHHHHHHHCCSEEEEESCCSSSCHHHHHHHHHTSTTTTTSCEEEEE
T ss_pred HHHHHHHHHHHc---CCeEEEeCCHHHHHHHHHcCCCCEEEEcCCCCCCCHHHHHHHHHcCcccCCCCEEEEe
Confidence 344555555542 32 3345677888888888999999876655344445555544 3679998875
No 122
>3out_A Glutamate racemase; structural genomics, center for structural genomics of infec diseases, csgid, MURI, cell envelope; HET: MSE DGL; 1.65A {Francisella tularensis subsp}
Probab=30.07 E-value=45 Score=26.72 Aligned_cols=40 Identities=28% Similarity=0.247 Sum_probs=29.1
Q ss_pred HHHHHHhcCCeeEEEEcCCCCchhhHHHHHHHHHhC-CCCEEEe
Q psy16564 58 EAAKALDRREAQLCVLADNCDEPAYKKLVQALCSEH-QIPLIKV 100 (157)
Q Consensus 58 ~v~KaL~kgkakLVIlA~D~s~~~~~~~l~~lc~~~-~Ipvi~v 100 (157)
+..+.|++..+++++||.+... . -.+..+-+.. +||++-+
T Consensus 60 ~~~~~L~~~g~~~iVIACNTa~-~--~al~~lr~~~~~iPvigi 100 (268)
T 3out_A 60 QTAKFLIDQEVKAIIIACNTIS-A--IAKDIVQEIAKAIPVIDV 100 (268)
T ss_dssp HHHHHHHHTTCSEEEECCHHHH-H--HHHHHHHHHHTTSCEEEH
T ss_pred HHHHHHHHCCCCEEEEeCCChH-H--HHHHHHHHhcCCCCEEec
Confidence 3456677778999999998755 2 2346666777 8999974
No 123
>3hdg_A Uncharacterized protein; two-component sensor activity, response regulator, PSI-II, 11227F, NYSGXRC, structural genomics; 2.27A {Wolinella succinogenes} SCOP: c.23.1.0
Probab=30.07 E-value=54 Score=21.50 Aligned_cols=65 Identities=8% Similarity=0.051 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHHhcCC---ceeeHHHHHHHHhcCCeeEEEEcCCCCchhhHHHHHHHHHh-CCCCEEEeCC
Q psy16564 35 INKALQQVLKTARAHDG---LAKGLHEAAKALDRREAQLCVLADNCDEPAYKKLVQALCSE-HQIPLIKVDN 102 (157)
Q Consensus 35 ~~k~L~~lL~~A~~agk---lv~G~~~v~KaL~kgkakLVIlA~D~s~~~~~~~l~~lc~~-~~Ipvi~v~s 102 (157)
....+..+|.. .|. ......+++..++.....+||+--+.+..+-...+..+.+. .++|++.+.+
T Consensus 19 ~~~~l~~~L~~---~~~~v~~~~~~~~a~~~l~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~ii~~s~ 87 (137)
T 3hdg_A 19 AREWLSTIISN---HFPEVWSAGDGEEGERLFGLHAPDVIITDIRMPKLGGLEMLDRIKAGGAKPYVIVISA 87 (137)
T ss_dssp HHHHHHHHHHT---TCSCEEEESSHHHHHHHHHHHCCSEEEECSSCSSSCHHHHHHHHHHTTCCCEEEECCC
T ss_pred HHHHHHHHHHh---cCcEEEEECCHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCcEEEEec
Confidence 44455555544 343 23456778888888889999998776554444455555444 4788888763
No 124
>3ixr_A Bacterioferritin comigratory protein; alpha beta protein, oxidoreductase; 1.60A {Xylella fastidiosa}
Probab=29.90 E-value=57 Score=23.43 Aligned_cols=52 Identities=8% Similarity=0.109 Sum_probs=34.9
Q ss_pred HHHHHHHhcCCeeEEEEcCCCCchhhHHHHHHHHHhCCCCEEEeC-CHHHHHHHhCCC
Q psy16564 57 HEAAKALDRREAQLCVLADNCDEPAYKKLVQALCSEHQIPLIKVD-NNKKLGEWAGLS 113 (157)
Q Consensus 57 ~~v~KaL~kgkakLVIlA~D~s~~~~~~~l~~lc~~~~Ipvi~v~-sk~eLG~a~G~~ 113 (157)
.+..+.++...+.+|.|+.|..+ .+..+++++++++-.+. ...++.++.|..
T Consensus 75 ~~l~~~~~~~~~~vv~Vs~D~~~-----~~~~~~~~~~~~f~~l~D~~~~~~~~~gv~ 127 (179)
T 3ixr_A 75 NLLLPQFEQINATVLGVSRDSVK-----SHDSFCAKQGFTFPLVSDSDAILCKAFDVI 127 (179)
T ss_dssp HHHHHHHHTTTEEEEEEESCCHH-----HHHHHHHHHTCCSCEEECTTCHHHHHTTCE
T ss_pred HHHHHHHHHCCCEEEEEcCCCHH-----HHHHHHHHcCCceEEEECCchHHHHHcCCc
Confidence 34445555566889999888533 34566777777655544 567899999974
No 125
>3h5n_A MCCB protein; ubiquitin-activating enzyme, microcin, protein structure, MCCC7, peptide antibiotics, N-P bond formation, transferase; HET: ATP; 1.90A {Escherichia coli} PDB: 3h5r_A 3h9g_A 3h9j_A* 3h9q_A 3h5a_A
Probab=29.83 E-value=69 Score=26.49 Aligned_cols=35 Identities=20% Similarity=0.316 Sum_probs=28.4
Q ss_pred CCeeEEEEcCCCCchhhHHHHHHHHHhCCCCEEEeC
Q psy16564 66 REAQLCVLADNCDEPAYKKLVQALCSEHQIPLIKVD 101 (157)
Q Consensus 66 gkakLVIlA~D~s~~~~~~~l~~lc~~~~Ipvi~v~ 101 (157)
....+||.|.|-.+ .....+..+|.++++|++...
T Consensus 207 ~~~DlVvd~~Dn~~-~~r~~ln~~c~~~~~p~i~~~ 241 (353)
T 3h5n_A 207 PEADIWVVSADHPF-NLINWVNKYCVRANQPYINAG 241 (353)
T ss_dssp CCCSEEEECCCCST-THHHHHHHHHHHTTCCEEEEE
T ss_pred ccCCEEEEecCChH-HHHHHHHHHHHHhCCCEEEEE
Confidence 35778999988765 477788899999999999764
No 126
>3t7y_A YOP proteins translocation protein U; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta; 2.10A {Chlamydia trachomatis} SCOP: d.367.1.0
Probab=29.53 E-value=22 Score=24.75 Aligned_cols=27 Identities=15% Similarity=0.154 Sum_probs=20.4
Q ss_pred hhHHHHHHHHHhCCCCEEEeCCHHHHHHHh
Q psy16564 81 AYKKLVQALCSEHQIPLIKVDNNKKLGEWA 110 (157)
Q Consensus 81 ~~~~~l~~lc~~~~Ipvi~v~sk~eLG~a~ 110 (157)
.+...+...++++|||++.- ..|.+++
T Consensus 42 ~~A~~I~~~A~e~gVPi~e~---~~LAr~L 68 (97)
T 3t7y_A 42 LRAKRIIAEAEKYGVPIMRN---VPLAHQL 68 (97)
T ss_dssp HHHHHHHHHHHHHTCCEEEC---HHHHHHH
T ss_pred HHHHHHHHHHHHcCCeEEEC---HHHHHHH
Confidence 37788999999999999853 3455554
No 127
>2b9s_B DNA topoisomerase I-like protein; vanadate complex, isomerase/DNA complex; HET: DNA; 2.27A {Leishmania donovani}
Probab=29.30 E-value=12 Score=24.38 Aligned_cols=23 Identities=9% Similarity=0.196 Sum_probs=18.9
Q ss_pred HHHHHHhCCCCEEEeCCHHHHHH
Q psy16564 86 VQALCSEHQIPLIKVDNNKKLGE 108 (157)
Q Consensus 86 l~~lc~~~~Ipvi~v~sk~eLG~ 108 (157)
-.++|++++||+..++++..+.+
T Consensus 28 tvaWcKr~~VPieKif~ktlr~K 50 (62)
T 2b9s_B 28 ICSWAKAQDVPINKIFSATIQKK 50 (62)
T ss_dssp HHHHHHHTTCCGGGTSCHHHHHH
T ss_pred hhhhhhhcCCCHHHHhhHHHHHh
Confidence 35799999999999998876654
No 128
>2rli_A SCO2 protein homolog, mitochondrial; copper protein, thioredoxin fold, metal transport, structural genomics, spine2-complexes; NMR {Homo sapiens}
Probab=29.21 E-value=1.3e+02 Score=20.51 Aligned_cols=47 Identities=4% Similarity=0.012 Sum_probs=32.9
Q ss_pred CCeeEEEEcCCCCchhhHHHHHHHHHhCCCCEEEeC-CH---HHHHHHhCCC
Q psy16564 66 REAQLCVLADNCDEPAYKKLVQALCSEHQIPLIKVD-NN---KKLGEWAGLS 113 (157)
Q Consensus 66 gkakLVIlA~D~s~~~~~~~l~~lc~~~~Ipvi~v~-sk---~eLG~a~G~~ 113 (157)
..+.+|.|.-|-.. +....+..+++++++++..+. +. .++.+..|..
T Consensus 63 ~~v~vv~is~d~~~-d~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~v~ 113 (171)
T 2rli_A 63 PPVQPVFITVDPER-DDVEAMARYVQDFHPRLLGLTGSTKQVAQASHSYRVY 113 (171)
T ss_dssp CCEEEEEEESCSTT-CCHHHHHHHHHTTCTTCCEEECCHHHHHHHHHHSCCC
T ss_pred CceEEEEEEECCCC-CCHHHHHHHHHHcCCCeEEEeCCHHHHHHHHHHhCeE
Confidence 46888999888543 344567888899888776654 33 3677788864
No 129
>3hdv_A Response regulator; PSI-II, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.09A {Pseudomonas putida} SCOP: c.23.1.0
Probab=29.09 E-value=1e+02 Score=20.07 Aligned_cols=64 Identities=20% Similarity=0.171 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHhcCCc---eeeHHHHHHHHhcCC-eeEEEEcCCCCchhhHHHHHHHHHh--CCCCEEEeC
Q psy16564 35 INKALQQVLKTARAHDGL---AKGLHEAAKALDRRE-AQLCVLADNCDEPAYKKLVQALCSE--HQIPLIKVD 101 (157)
Q Consensus 35 ~~k~L~~lL~~A~~agkl---v~G~~~v~KaL~kgk-akLVIlA~D~s~~~~~~~l~~lc~~--~~Ipvi~v~ 101 (157)
....+..+|.. .|.- .....+.+..+.... ..+||+--+.+..+-...+..+-+. .++|++.+.
T Consensus 19 ~~~~l~~~L~~---~g~~v~~~~~~~~a~~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~ii~~s 88 (136)
T 3hdv_A 19 NREALILYLKS---RGIDAVGADGAEEARLYLHYQKRIGLMITDLRMQPESGLDLIRTIRASERAALSIIVVS 88 (136)
T ss_dssp HHHHHHHHHHH---TTCCEEEESSHHHHHHHHHHCTTEEEEEECSCCSSSCHHHHHHHHHTSTTTTCEEEEEE
T ss_pred HHHHHHHHHHH---cCceEEEeCCHHHHHHHHHhCCCCcEEEEeccCCCCCHHHHHHHHHhcCCCCCCEEEEe
Confidence 44555566654 2433 334566777777766 8999987776553444444444433 568888876
No 130
>1rlk_A Hypothetical protein TA0108; structural genomics, conserved hypothetical protein, PSI, PR structure initiative; HET: SO4; 1.95A {Thermoplasma acidophilum} SCOP: c.131.1.1
Probab=28.87 E-value=1.5e+02 Score=20.74 Aligned_cols=68 Identities=12% Similarity=0.132 Sum_probs=41.8
Q ss_pred HHHHHHHhcCCeeEEEEcCCCCchhhHHHHHHHHHhCCCCEEEeCCHHHHHHHhCCCccccCCCccceeeeEEEEEecCc
Q psy16564 57 HEAAKALDRREAQLCVLADNCDEPAYKKLVQALCSEHQIPLIKVDNNKKLGEWAGLSKLDNMGKARKVVGCSCVVIKVRN 136 (157)
Q Consensus 57 ~~v~KaL~kgkakLVIlA~D~s~~~~~~~l~~lc~~~~Ipvi~v~sk~eLG~a~G~~~~~~~gk~rki~~~s~vaI~D~g 136 (157)
.........|..+.|+-+.|.++ +. .+...+++.|+|...+-+. |..... | -...|++| -|+
T Consensus 41 ~~~~~W~~~g~~kiVlk~~~e~~--l~-~l~~~a~~~gl~~~~v~DA-------G~Tei~----~---gt~Tvlai-gP~ 102 (117)
T 1rlk_A 41 DVFNEWYDEGQRKIVVKVNDLDE--IM-EIKRMADSMGIVNEIVQDR-------GYTQVE----P---GTITCIGL-GPD 102 (117)
T ss_dssp HHHHHHHHTTCCEEEEEESSHHH--HH-HHHHHHHHHTCCEEEEECC-------CSSSSS----C---CCEEEEEE-EEE
T ss_pred HHHHHHHHCCCeEEEEecCCHHH--HH-HHHHHHHHCCCCEEEEEeC-------CccCcC----C---CCEEEEEe-CcC
Confidence 34444555688888887877544 33 4667788889998777543 543221 1 13467888 566
Q ss_pred hhHHhh
Q psy16564 137 WFLIIC 142 (157)
Q Consensus 137 ~~~~~~ 142 (157)
..+.+.
T Consensus 103 ~~~~vd 108 (117)
T 1rlk_A 103 EEEKLD 108 (117)
T ss_dssp EHHHHH
T ss_pred CHHHHH
Confidence 555443
No 131
>1zuw_A Glutamate racemase 1; (R)-glutamate, peptidoglycan biosynthesi isomerase; HET: DGL; 1.75A {Bacillus subtilis}
Probab=28.84 E-value=38 Score=26.93 Aligned_cols=41 Identities=22% Similarity=0.259 Sum_probs=30.4
Q ss_pred HHHHHHHhc-CCeeEEEEcCCCCchhhHHHHHHHHHhCCCCEEEe
Q psy16564 57 HEAAKALDR-REAQLCVLADNCDEPAYKKLVQALCSEHQIPLIKV 100 (157)
Q Consensus 57 ~~v~KaL~k-gkakLVIlA~D~s~~~~~~~l~~lc~~~~Ipvi~v 100 (157)
.+..+.|.+ ..++++++|.+... .. .+..+-+..+||++-+
T Consensus 55 ~~~~~~L~~~~g~d~iViACNTas-~~--~l~~lr~~~~iPVigi 96 (272)
T 1zuw_A 55 WELTNYLLENHHIKMLVIACNTAT-AI--ALDDIQRSVGIPVVGV 96 (272)
T ss_dssp HHHHHHHHHHSCCSEEEECCHHHH-HH--HHHHHHHHCSSCEEES
T ss_pred HHHHHHHHhhcCCCEEEEeCchhh-HH--HHHHHHHHCCCCEEcc
Confidence 345666777 77999999999866 22 2566667789999984
No 132
>3nhm_A Response regulator; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.19A {Myxococcus xanthus}
Probab=28.46 E-value=95 Score=20.04 Aligned_cols=50 Identities=20% Similarity=0.115 Sum_probs=34.4
Q ss_pred eeeHHHHHHHHhcCCeeEEEEcCCCCchhhHHHHHHHHHh---CCCCEEEeCC
Q psy16564 53 AKGLHEAAKALDRREAQLCVLADNCDEPAYKKLVQALCSE---HQIPLIKVDN 102 (157)
Q Consensus 53 v~G~~~v~KaL~kgkakLVIlA~D~s~~~~~~~l~~lc~~---~~Ipvi~v~s 102 (157)
.....+.+..+.+....+||+--+.+..+-...+..+-+. .++|++.+.+
T Consensus 33 ~~~~~~a~~~l~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~~pii~~s~ 85 (133)
T 3nhm_A 33 AADGASGLQQALAHPPDVLISDVNMDGMDGYALCGHFRSEPTLKHIPVIFVSG 85 (133)
T ss_dssp ESSHHHHHHHHHHSCCSEEEECSSCSSSCHHHHHHHHHHSTTTTTCCEEEEES
T ss_pred ECCHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHhCCccCCCCEEEEeC
Confidence 3456778888888889999998766553444444444442 4799998764
No 133
>3drn_A Peroxiredoxin, bacterioferritin comigratory prote homolog; bacterioferritin comigratory protein, oxidore; HET: CIT; 2.15A {Sulfolobus solfataricus} SCOP: c.47.1.0
Probab=28.44 E-value=83 Score=21.81 Aligned_cols=50 Identities=16% Similarity=0.186 Sum_probs=35.3
Q ss_pred HHHHHhcCCeeEEEEcCCCCchhhHHHHHHHHHhCCCCEEEeC-CHHHHHHHhCCC
Q psy16564 59 AAKALDRREAQLCVLADNCDEPAYKKLVQALCSEHQIPLIKVD-NNKKLGEWAGLS 113 (157)
Q Consensus 59 v~KaL~kgkakLVIlA~D~s~~~~~~~l~~lc~~~~Ipvi~v~-sk~eLG~a~G~~ 113 (157)
..+.+....+.+|.|..|. + ..+..+++++++++-.+. ...++.+..|..
T Consensus 55 ~~~~~~~~~v~vv~vs~d~-~----~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~ 105 (161)
T 3drn_A 55 NWDLLKDYDVVVIGVSSDD-I----NSHKRFKEKYKLPFILVSDPDKKIRELYGAK 105 (161)
T ss_dssp THHHHHTTCEEEEEEESCC-H----HHHHHHHHHTTCCSEEEECTTSHHHHHTTCC
T ss_pred HHHHHHHcCCEEEEEeCCC-H----HHHHHHHHHhCCCceEEECCcHHHHHHcCCC
Confidence 3445554458888888874 3 245677888898876655 567899999874
No 134
>2gzm_A Glutamate racemase; enzyme, isomerase; HET: DGL; 1.99A {Bacillus anthracis}
Probab=28.16 E-value=45 Score=26.33 Aligned_cols=40 Identities=23% Similarity=0.319 Sum_probs=30.1
Q ss_pred HHHHHHhcCCeeEEEEcCCCCchhhHHHHHHHHHhCCCCEEEe
Q psy16564 58 EAAKALDRREAQLCVLADNCDEPAYKKLVQALCSEHQIPLIKV 100 (157)
Q Consensus 58 ~v~KaL~kgkakLVIlA~D~s~~~~~~~l~~lc~~~~Ipvi~v 100 (157)
+..+.|.+..++++++|.+... .. .+..+-+..+||++.+
T Consensus 56 ~~~~~L~~~g~d~iviaCNTas-~~--~l~~lr~~~~iPvigi 95 (267)
T 2gzm_A 56 EMTEHLLDLNIKMLVIACNTAT-AV--VLEEMQKQLPIPVVGV 95 (267)
T ss_dssp HHHHHHHTTTCSEEEECCHHHH-HH--HHHHHHHHCSSCEEES
T ss_pred HHHHHHHHCCCCEEEEeCchhh-HH--HHHHHHHhCCCCEEee
Confidence 4456677777999999999865 22 2566677889999984
No 135
>3tha_A Tryptophan synthase alpha chain; structural genomics, center for structural genomics of infec diseases, csgid, lyase; 2.37A {Campylobacter jejuni}
Probab=27.95 E-value=1.8e+02 Score=23.16 Aligned_cols=88 Identities=14% Similarity=0.205 Sum_probs=53.0
Q ss_pred CCCCCCCCCc-------------ccHHHHHHHHHHHHHhcCCc----------eeeHHHHHHHHhcCCeeEEEEcCCCCc
Q psy16564 23 NVPSANDEGV-------------SDINKALQQVLKTARAHDGL----------AKGLHEAAKALDRREAQLCVLADNCDE 79 (157)
Q Consensus 23 ~~~~p~~~~~-------------m~~~k~L~~lL~~A~~agkl----------v~G~~~v~KaL~kgkakLVIlA~D~s~ 79 (157)
|+--|+++++ +++.+.+ ++++..|..-.+ ..|.+.-.+..+.--+.=+|+ -|.++
T Consensus 50 PfSDP~aDGpvIq~a~~rAL~~g~~~~~~~-~~~~~~r~~~Pivlm~Y~N~i~~~G~e~F~~~~~~aGvdG~Ii-pDLP~ 127 (252)
T 3tha_A 50 AYSDPIADGEIIADAAKIALDQGVDIHSVF-ELLARIKTKKALVFMVYYNLIFSYGLEKFVKKAKSLGICALIV-PELSF 127 (252)
T ss_dssp CCSCCCSCCCHHHHHHHHHHHTTCCHHHHH-HHHHHCCCSSEEEEECCHHHHHHHCHHHHHHHHHHTTEEEEEC-TTCCG
T ss_pred CCCCCCCCcHHHHHHHHHHHHCCCCHHHHH-HHHHHHhcCCCEEEEeccCHHHHhhHHHHHHHHHHcCCCEEEe-CCCCH
Confidence 5556777777 4445555 455544322112 247666666666544555544 46776
Q ss_pred hhhHHHHHHHHHhCCCCEEEe-C---CHHHHHHHhCCC
Q psy16564 80 PAYKKLVQALCSEHQIPLIKV-D---NNKKLGEWAGLS 113 (157)
Q Consensus 80 ~~~~~~l~~lc~~~~Ipvi~v-~---sk~eLG~a~G~~ 113 (157)
++ ...+...|+++|+..+++ . +.+++-++....
T Consensus 128 eE-~~~~~~~~~~~Gl~~I~lvaP~t~~eRi~~ia~~a 164 (252)
T 3tha_A 128 EE-SDDLIKECERYNIALITLVSVTTPKERVKKLVKHA 164 (252)
T ss_dssp GG-CHHHHHHHHHTTCEECEEEETTSCHHHHHHHHTTC
T ss_pred HH-HHHHHHHHHHcCCeEEEEeCCCCcHHHHHHHHHhC
Confidence 44 667889999999977662 2 367777777653
No 136
>1je3_A EC005, hypothetical 8.6 kDa protein in AMYA-FLIE intergenic region; mixed alpha-beta structure, structural genomics; NMR {Escherichia coli} SCOP: d.68.3.3
Probab=27.54 E-value=39 Score=23.16 Aligned_cols=40 Identities=15% Similarity=0.199 Sum_probs=27.3
Q ss_pred HHHHHHhc---CCeeEEEEcCCCCchhhHHHHHHHHHhCCCCEEEeC
Q psy16564 58 EAAKALDR---REAQLCVLADNCDEPAYKKLVQALCSEHQIPLIKVD 101 (157)
Q Consensus 58 ~v~KaL~k---gkakLVIlA~D~s~~~~~~~l~~lc~~~~Ipvi~v~ 101 (157)
.+.++|++ |+ .|.|++.|... ...|+.+|++.|-.+....
T Consensus 43 ktkkaL~~l~~Ge-~L~Vl~dd~~a---~~dIp~~~~~~G~~v~~~e 85 (97)
T 1je3_A 43 ATLEAMPQLKKGE-ILEVVSDCPQS---INNIPLDARNHGYTVLDIQ 85 (97)
T ss_dssp HHHHHTTTCCSSC-EEEEEEBCSSS---SCHHHHHHHHHTCSEEEEE
T ss_pred HHHHHHHcCCCCC-EEEEEECCcch---HHHHHHHHHHCCCEEEEEE
Confidence 44555554 43 47788888554 3468899999988887643
No 137
>2k6v_A Putative cytochrome C oxidase assembly protein; thioredoxin fold, electron transfer protein, metal binding protein, electron transport; NMR {Thermus thermophilus}
Probab=27.48 E-value=1.3e+02 Score=20.56 Aligned_cols=45 Identities=4% Similarity=0.140 Sum_probs=33.2
Q ss_pred CeeEEEEcCCCCchhhHHHHHHHHHhCCCCEEEeC-CH---HHHHHHhCC
Q psy16564 67 EAQLCVLADNCDEPAYKKLVQALCSEHQIPLIKVD-NN---KKLGEWAGL 112 (157)
Q Consensus 67 kakLVIlA~D~s~~~~~~~l~~lc~~~~Ipvi~v~-sk---~eLG~a~G~ 112 (157)
.+.+|.|..|-.. +....+..++++++.++..+. +. .++.+.+|.
T Consensus 72 ~v~vv~is~d~~~-d~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~gv 120 (172)
T 2k6v_A 72 RVQVIFVSVDPER-DPPEVADRYAKAFHPSFLGLSGSPEAVREAAQTFGV 120 (172)
T ss_dssp TEEEEEEESCTTT-CCHHHHHHHHHHHCTTEEEECCCHHHHHHHHHHHTC
T ss_pred CEEEEEEEECCCC-CCHHHHHHHHHHhCCCcEEEeCCHHHHHHHHHhcCe
Confidence 6888888877543 345567888899999988877 44 367777775
No 138
>3jte_A Response regulator receiver protein; structural genomics, nysgrc, response regulator receiver DOM target 11226E, PSI-2; 1.90A {Clostridium thermocellum atcc 27405}
Probab=27.38 E-value=1.2e+02 Score=19.93 Aligned_cols=65 Identities=8% Similarity=0.110 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHhcCCc---eeeHHHHHHHHh--cCCeeEEEEcCCCCchhhHHHHHHHHHh-CCCCEEEeCC
Q psy16564 35 INKALQQVLKTARAHDGL---AKGLHEAAKALD--RREAQLCVLADNCDEPAYKKLVQALCSE-HQIPLIKVDN 102 (157)
Q Consensus 35 ~~k~L~~lL~~A~~agkl---v~G~~~v~KaL~--kgkakLVIlA~D~s~~~~~~~l~~lc~~-~~Ipvi~v~s 102 (157)
....+..+|.. .|.- .....+++..+. .....+||+--+.+..+-...+..+-+. .++|++.+.+
T Consensus 15 ~~~~l~~~l~~---~g~~v~~~~~~~~a~~~~~~~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~ii~ls~ 85 (143)
T 3jte_A 15 ILQNIKFLLEI---DGNEVLTASSSTEGLRIFTENCNSIDVVITDMKMPKLSGMDILREIKKITPHMAVIILTG 85 (143)
T ss_dssp HHHHHHHHHHH---TTCEEEEESSHHHHHHHHHHTTTTCCEEEEESCCSSSCHHHHHHHHHHHCTTCEEEEEEC
T ss_pred HHHHHHHHHHh---CCceEEEeCCHHHHHHHHHhCCCCCCEEEEeCCCCCCcHHHHHHHHHHhCCCCeEEEEEC
Confidence 44455555553 3432 335677777787 5678999998766553444444444443 4689888764
No 139
>1xty_A PTH, peptidyl-tRNA hydrolase; mixed beta sheet; 1.80A {Pyrococcus abyssi}
Probab=27.25 E-value=1.6e+02 Score=20.63 Aligned_cols=66 Identities=14% Similarity=0.178 Sum_probs=40.9
Q ss_pred HHHHHhcCCeeEEEEcCCCCchhhHHHHHHHHHhCCCCEEEeCCHHHHHHHhCCCccccCCCccceeeeEEEEEecCchh
Q psy16564 59 AAKALDRREAQLCVLADNCDEPAYKKLVQALCSEHQIPLIKVDNNKKLGEWAGLSKLDNMGKARKVVGCSCVVIKVRNWF 138 (157)
Q Consensus 59 v~KaL~kgkakLVIlA~D~s~~~~~~~l~~lc~~~~Ipvi~v~sk~eLG~a~G~~~~~~~gk~rki~~~s~vaI~D~g~~ 138 (157)
.......|..+.|+-+.|.++ +. .+...+++.|+|...+.+. |..+.. | -...|++| -|+..
T Consensus 46 ~~~W~~~g~~KiVlk~~~e~e--l~-~l~~~a~~~gl~~~~i~DA-------G~Tei~----~---gs~Tvlai-gP~~~ 107 (120)
T 1xty_A 46 LNEWLHQGQPKIIVKVNSLDE--II-SRAKKAETMNLPFSIIEDA-------GKTQLE----P---GTITCLGI-GPAPE 107 (120)
T ss_dssp HHHHHHTTCCEEEEEESSHHH--HH-HHHHHHHHTTCCEEEEECC-------SSSSSC----T---TCEEEEEE-EEEEH
T ss_pred HHHHHHCCCcEEEEecCCHHH--HH-HHHHHHHHCCCCEEEEEcC-------CccccC----C---CCeEEEEe-ccCCH
Confidence 344455788888888877544 33 4677888999998776543 432221 1 13467888 46655
Q ss_pred HHhh
Q psy16564 139 LIIC 142 (157)
Q Consensus 139 ~~~~ 142 (157)
+.+.
T Consensus 108 ~~vd 111 (120)
T 1xty_A 108 NLVD 111 (120)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5443
No 140
>1q3q_A Thermosome alpha subunit; chaperone, chaperonin; HET: ANP; 2.30A {Thermococcus SP} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1q2v_A* 1q3s_A* 1q3r_A
Probab=27.05 E-value=70 Score=28.24 Aligned_cols=51 Identities=16% Similarity=0.241 Sum_probs=34.4
Q ss_pred HHHHHHhcCCeeEEEEcCCCCchhhHHHHHHHHHhCCCCEEEeCCHH---HHHHHhCCC
Q psy16564 58 EAAKALDRREAQLCVLADNCDEPAYKKLVQALCSEHQIPLIKVDNNK---KLGEWAGLS 113 (157)
Q Consensus 58 ~v~KaL~kgkakLVIlA~D~s~~~~~~~l~~lc~~~~Ipvi~v~sk~---eLG~a~G~~ 113 (157)
..++.|.+-.+.+||++.|+++ ...+++.+++|-++.--.+. +|.+++|-.
T Consensus 278 ~~le~I~~~g~~lvi~~~~I~~-----~al~~L~~~~I~av~~~~k~~le~ia~~tGa~ 331 (548)
T 1q3q_A 278 DMVDHIAQTGANVVFVQKGIDD-----LAQHYLAKYGIMAVRRVKKSDMEKLAKATGAK 331 (548)
T ss_dssp HHHHHHHHHTCCEEEESSCBCH-----HHHHHHHHTTCEEECSCCHHHHHHHHHHHCCC
T ss_pred HHHHHHHHhCcCEEEEcCCcCH-----HHHHHHHHCCcEEEccCCHHHHHHHHHHhCCe
Confidence 4455565556889999999998 23445567888777644555 556666643
No 141
>3lua_A Response regulator receiver protein; two-component signal transduction system, histidine kinase, phosphorelay, receiver domain, nysgxrc; 2.40A {Clostridium thermocellum}
Probab=26.97 E-value=79 Score=20.80 Aligned_cols=65 Identities=9% Similarity=0.102 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHHhcCC---ceeeHHHHHHHHhc-CCeeEEEEcCCCC-chhhHHHHHHHHH---hCCCCEEEeC
Q psy16564 35 INKALQQVLKTARAHDG---LAKGLHEAAKALDR-REAQLCVLADNCD-EPAYKKLVQALCS---EHQIPLIKVD 101 (157)
Q Consensus 35 ~~k~L~~lL~~A~~agk---lv~G~~~v~KaL~k-gkakLVIlA~D~s-~~~~~~~l~~lc~---~~~Ipvi~v~ 101 (157)
....|..+|... .|. ......++++.+.. ....+||+--+.+ ..+-...+..+.+ ..++|++.+.
T Consensus 16 ~~~~l~~~L~~~--~~~~v~~~~~~~~a~~~l~~~~~~dlvi~D~~l~~~~~g~~~~~~l~~~~~~~~~~ii~ls 88 (140)
T 3lua_A 16 EREKTKIIFDNI--GEYDFIEVENLKKFYSIFKDLDSITLIIMDIAFPVEKEGLEVLSAIRNNSRTANTPVIIAT 88 (140)
T ss_dssp HHHHHHHHHHHH--CCCEEEEECSHHHHHTTTTTCCCCSEEEECSCSSSHHHHHHHHHHHHHSGGGTTCCEEEEE
T ss_pred HHHHHHHHHHhc--cCccEEEECCHHHHHHHHhcCCCCcEEEEeCCCCCCCcHHHHHHHHHhCcccCCCCEEEEe
Confidence 444555555541 243 33456777778888 8899999988777 5444555555554 4789999876
No 142
>2qsj_A DNA-binding response regulator, LUXR family; structural genomics, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi dss-3}
Probab=26.95 E-value=1e+02 Score=20.54 Aligned_cols=67 Identities=16% Similarity=0.141 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHhcCC----ceeeHHHHHHHHhc-CCeeEEEEcCCCCchhhHHHHHHHHHh-CCCCEEEeCCH
Q psy16564 35 INKALQQVLKTARAHDG----LAKGLHEAAKALDR-REAQLCVLADNCDEPAYKKLVQALCSE-HQIPLIKVDNN 103 (157)
Q Consensus 35 ~~k~L~~lL~~A~~agk----lv~G~~~v~KaL~k-gkakLVIlA~D~s~~~~~~~l~~lc~~-~~Ipvi~v~sk 103 (157)
....|..+|... .|. .+....+.++.+.. ....+||+--+.+..+-...+..+.+. .++|++.+.+.
T Consensus 15 ~~~~l~~~L~~~--~g~~~v~~~~~~~~a~~~l~~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~ii~ls~~ 87 (154)
T 2qsj_A 15 IRAGAKNLLEGA--FSGMRVEGAETVSDALAFLEADNTVDLILLDVNLPDAEAIDGLVRLKRFDPSNAVALISGE 87 (154)
T ss_dssp HHHHHHHHHHHH--CTTEEEEEESSHHHHHHHHHTTCCCSEEEECC------CHHHHHHHHHHCTTSEEEEC---
T ss_pred HHHHHHHHHHhC--CCceEEEEecCHHHHHHHHhccCCCCEEEEeCCCCCCchHHHHHHHHHhCCCCeEEEEeCC
Confidence 445555666543 133 24456788888888 788999987665443333444444443 47899887643
No 143
>1xhf_A DYE resistance, aerobic respiration control protein ARCA; two-component system, gene regulation, transcription factor, anoxic redox control; 2.15A {Escherichia coli} SCOP: c.23.1.1 PDB: 1xhe_A
Probab=26.81 E-value=96 Score=19.69 Aligned_cols=47 Identities=15% Similarity=0.133 Sum_probs=31.5
Q ss_pred eHHHHHHHHhcCCeeEEEEcCCCCchhhHHHHHHHHHhCCCCEEEeC
Q psy16564 55 GLHEAAKALDRREAQLCVLADNCDEPAYKKLVQALCSEHQIPLIKVD 101 (157)
Q Consensus 55 G~~~v~KaL~kgkakLVIlA~D~s~~~~~~~l~~lc~~~~Ipvi~v~ 101 (157)
...+.+..+......+||+--+.+..+-...+..+.+..++|++.+.
T Consensus 35 ~~~~a~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~ii~~s 81 (123)
T 1xhf_A 35 DGAEMHQILSEYDINLVIMDINLPGKNGLLLARELREQANVALMFLT 81 (123)
T ss_dssp SHHHHHHHHHHSCCSEEEECSSCSSSCHHHHHHHHHHHCCCEEEEEE
T ss_pred CHHHHHHHHhcCCCCEEEEcCCCCCCCHHHHHHHHHhCCCCcEEEEE
Confidence 44677788888888999887665443333444555445789998875
No 144
>3bzs_A ESCU; auto cleavage protein, intein, T3SS, TTSS, asparagine cycliz membrane, membrane protein, protein transport; 1.48A {Escherichia coli} PDB: 3bzr_A 3bzp_A 3bzt_A 3c03_A
Probab=26.70 E-value=35 Score=25.24 Aligned_cols=34 Identities=18% Similarity=0.097 Sum_probs=23.9
Q ss_pred EcCCCCchhhHHHHHHHHHhCCCCEEEeCCHHHHHHHhC
Q psy16564 73 LADNCDEPAYKKLVQALCSEHQIPLIKVDNNKKLGEWAG 111 (157)
Q Consensus 73 lA~D~s~~~~~~~l~~lc~~~~Ipvi~v~sk~eLG~a~G 111 (157)
+|.=.+. +...|..+|+++|||++.- ..|.+++-
T Consensus 75 vAKG~g~--~A~~I~e~A~e~gVPi~e~---~~LAr~Ly 108 (137)
T 3bzs_A 75 IETGKDA--KALQIIKLAELYDIPVIED---IPLARSLY 108 (137)
T ss_dssp EEEEETH--HHHHHHHHHHHHTCCEEEC---HHHHHHHH
T ss_pred EEEeCCH--HHHHHHHHHHHcCCCEEeC---HHHHHHHH
Confidence 4554443 7788999999999999853 34555543
No 145
>1pq4_A Periplasmic binding protein component of AN ABC T uptake transporter; ZNUA, loop, metal-binding, metal binding protein; 1.90A {Synechocystis SP} SCOP: c.92.2.2 PDB: 2ov3_A 2ov1_A
Probab=26.63 E-value=1e+02 Score=24.56 Aligned_cols=26 Identities=8% Similarity=0.068 Sum_probs=20.4
Q ss_pred CCCCchhhHHHHHHHHHhCCCCEEEeC
Q psy16564 75 DNCDEPAYKKLVQALCSEHQIPLIKVD 101 (157)
Q Consensus 75 ~D~s~~~~~~~l~~lc~~~~Ipvi~v~ 101 (157)
.+.++ .....+..++++.+|++++++
T Consensus 219 ~eps~-~~l~~l~~~ik~~~v~~If~e 244 (291)
T 1pq4_A 219 QEPSA-QELKQLIDTAKENNLTMVFGE 244 (291)
T ss_dssp BCCCH-HHHHHHHHHHHTTTCCEEEEE
T ss_pred CCCCH-HHHHHHHHHHHHcCCCEEEEe
Confidence 34566 556678889999999999986
No 146
>2jli_A YSCU, YOP proteins translocation protein; cell membrane, transmembrane, protein transport, type III secretion system, plasmid, membrane; 1.13A {Yersinia pestis}
Probab=26.34 E-value=36 Score=24.69 Aligned_cols=34 Identities=15% Similarity=0.166 Sum_probs=23.6
Q ss_pred EcCCCCchhhHHHHHHHHHhCCCCEEEeCCHHHHHHHhC
Q psy16564 73 LADNCDEPAYKKLVQALCSEHQIPLIKVDNNKKLGEWAG 111 (157)
Q Consensus 73 lA~D~s~~~~~~~l~~lc~~~~Ipvi~v~sk~eLG~a~G 111 (157)
+|.=.+. +...|..+|+++|||++.- ..|.+++-
T Consensus 65 vAKG~~~--~A~~I~~~A~e~~VPi~e~---~~LAr~Ly 98 (123)
T 2jli_A 65 TFKYTDA--QVQTVRKIAEEEGVPILQR---IPLARALY 98 (123)
T ss_dssp EEEEETH--HHHHHHHHHHHHTCCEEEC---HHHHHHHH
T ss_pred EEEeCCH--HHHHHHHHHHHcCCCEEeC---HHHHHHHH
Confidence 4444443 7788999999999999853 34555543
No 147
>3t6k_A Response regulator receiver; flavodoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: MSE; 1.86A {Chloroflexus aurantiacus} SCOP: c.23.1.0
Probab=26.32 E-value=1.4e+02 Score=19.67 Aligned_cols=66 Identities=11% Similarity=0.080 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHHhcCCce---eeHHHHHHHHhcCCeeEEEEcCCCCchhhHHHHHHHHH---hCCCCEEEeCCH
Q psy16564 35 INKALQQVLKTARAHDGLA---KGLHEAAKALDRREAQLCVLADNCDEPAYKKLVQALCS---EHQIPLIKVDNN 103 (157)
Q Consensus 35 ~~k~L~~lL~~A~~agklv---~G~~~v~KaL~kgkakLVIlA~D~s~~~~~~~l~~lc~---~~~Ipvi~v~sk 103 (157)
....+..+|.. .|.-+ ....++++.+......+||+--+-+..+-...+..+-+ ..++|++.+.+.
T Consensus 16 ~~~~l~~~L~~---~g~~v~~~~~~~~al~~~~~~~~dlvl~D~~lp~~~g~~~~~~lr~~~~~~~~pii~~t~~ 87 (136)
T 3t6k_A 16 VAEMLELVLRG---AGYEVRRAASGEEALQQIYKNLPDALICDVLLPGIDGYTLCKRVRQHPLTKTLPILMLTAQ 87 (136)
T ss_dssp HHHHHHHHHHH---TTCEEEEESSHHHHHHHHHHSCCSEEEEESCCSSSCHHHHHHHHHHSGGGTTCCEEEEECT
T ss_pred HHHHHHHHHHH---CCCEEEEeCCHHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHcCCCcCCccEEEEecC
Confidence 45556566653 34433 34567778888888999999776655333444444433 357999987643
No 148
>2vvt_A Glutamate racemase; isomerase, peptidoglycan synthesis, cell WALL biogenesis/degradation, cell shape, benzyl purine, MURI inhibitor; HET: I24 DGL; 1.65A {Enterococcus faecalis} PDB: 2jfp_A* 2jfo_A* 2jfu_A 2jfv_A* 2jfw_A*
Probab=26.20 E-value=51 Score=26.49 Aligned_cols=41 Identities=24% Similarity=0.304 Sum_probs=30.5
Q ss_pred HHHHHHhcCCeeEEEEcCCCCchhhHHHHHHHHHhCCCCEEEeC
Q psy16564 58 EAAKALDRREAQLCVLADNCDEPAYKKLVQALCSEHQIPLIKVD 101 (157)
Q Consensus 58 ~v~KaL~kgkakLVIlA~D~s~~~~~~~l~~lc~~~~Ipvi~v~ 101 (157)
+..+.|.+..++++++|.+... .. .+..+-+..+||++-+-
T Consensus 77 ~~~~~L~~~g~d~IVIACNTas-~~--~l~~lr~~~~iPVigii 117 (290)
T 2vvt_A 77 EMADFLLKKRIKMLVIACNTAT-AV--ALEEIKAALPIPVVGVI 117 (290)
T ss_dssp HHHHHHHTTTCSEEEECCHHHH-HH--HHHHHHHHCSSCEEESS
T ss_pred HHHHHHHHCCCCEEEEeCcchh-HH--HHHHHHHhCCCCEEccc
Confidence 4556677777999999998764 12 36667778899999853
No 149
>3md9_A Hemin-binding periplasmic protein HMUT; transport protein, alpha beta protein, rigid helical backbon substrate-free, heme transport; 1.50A {Yersinia pestis} PDB: 3nu1_A*
Probab=26.19 E-value=1.7e+02 Score=21.85 Aligned_cols=50 Identities=4% Similarity=0.070 Sum_probs=32.7
Q ss_pred HHHHhcCCeeEEEEcCCCCchhhHHHHHHHHHhCCCCEEEeCC----------HHHHHHHhCCC
Q psy16564 60 AKALDRREAQLCVLADNCDEPAYKKLVQALCSEHQIPLIKVDN----------NKKLGEWAGLS 113 (157)
Q Consensus 60 ~KaL~kgkakLVIlA~D~s~~~~~~~l~~lc~~~~Ipvi~v~s----------k~eLG~a~G~~ 113 (157)
.+.|..=+.-|||......+......| ++.+||++.+.. -..||+++|++
T Consensus 52 ~E~i~~l~PDlIi~~~~~~~~~~~~~L----~~~gipvv~~~~~~~~~~~~~~i~~lg~~~g~~ 111 (255)
T 3md9_A 52 AEGILAMKPTMLLVSELAQPSLVLTQI----ASSGVNVVTVPGQTTPESVAMKINAVATALHQT 111 (255)
T ss_dssp HHHHHTTCCSEEEEETTCSCHHHHHHH----HHTTCEEEEECCCCSHHHHHHHHHHHHHHHTCH
T ss_pred HHHHHccCCCEEEEcCCcCchhHHHHH----HHcCCcEEEeCCCCCHHHHHHHHHHHHHHhCCH
Confidence 556666677788877665432233322 567899998852 24789999974
No 150
>3gkn_A Bacterioferritin comigratory protein; BCP, PRX, atypical 2-Cys, oxidoreduc; HET: BIH; 1.47A {Xanthomonas campestris PV} PDB: 3gkk_A 3gkm_A
Probab=26.11 E-value=63 Score=22.28 Aligned_cols=51 Identities=12% Similarity=0.186 Sum_probs=33.1
Q ss_pred HHHHHHhcCCeeEEEEcCCCCchhhHHHHHHHHHhCCCCEEEeC-CHHHHHHHhCCC
Q psy16564 58 EAAKALDRREAQLCVLADNCDEPAYKKLVQALCSEHQIPLIKVD-NNKKLGEWAGLS 113 (157)
Q Consensus 58 ~v~KaL~kgkakLVIlA~D~s~~~~~~~l~~lc~~~~Ipvi~v~-sk~eLG~a~G~~ 113 (157)
+..+.+....+.+|.|+.|. + ..+..+++++++++-.+. ...++.+..|..
T Consensus 60 ~~~~~~~~~~~~vv~vs~d~-~----~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~ 111 (163)
T 3gkn_A 60 ALLPEFDKAGAKILGVSRDS-V----KSHDNFCAKQGFAFPLVSDGDEALCRAFDVI 111 (163)
T ss_dssp HHHHHHHHTTCEEEEEESSC-H----HHHHHHHHHHCCSSCEEECTTCHHHHHTTCE
T ss_pred HHHHHHHHCCCEEEEEeCCC-H----HHHHHHHHHhCCCceEEECCcHHHHHHhCCc
Confidence 34445555568899999983 3 234556667676655444 566899999974
No 151
>3szu_A ISPH, 4-hydroxy-3-methylbut-2-ENYL diphosphate reductas; 3Fe-4S iron-sulfur cluster, conserved cysteine, IPP and DMAP production final STEP; HET: H6P; 1.40A {Escherichia coli} PDB: 3szl_A* 3f7t_A* 3szo_A* 3t0f_A* 3t0g_A* 3urk_A* 3utc_A* 3utd_A* 3uv3_A* 3uv6_A* 3uv7_A* 3uwm_A* 3ke8_A* 3ke9_A* 3kef_A* 3kel_A 3kem_A*
Probab=26.11 E-value=71 Score=26.91 Aligned_cols=49 Identities=18% Similarity=0.297 Sum_probs=34.1
Q ss_pred HHHHHHhcCCeeEEEEcCCCCchhhHHHHHHHHHhCCCCEEEeCCHHHHHH
Q psy16564 58 EAAKALDRREAQLCVLADNCDEPAYKKLVQALCSEHQIPLIKVDNNKKLGE 108 (157)
Q Consensus 58 ~v~KaL~kgkakLVIlA~D~s~~~~~~~l~~lc~~~~Ipvi~v~sk~eLG~ 108 (157)
+..+.|.+ ++-++|+-.+-.. .-..+|...|++.+.|.+.+++-.+|-.
T Consensus 217 ~av~~lA~-~vD~miVVGg~nS-SNT~rL~eia~~~g~~ty~Ie~~~el~~ 265 (328)
T 3szu_A 217 EAVRALAE-QAEVVLVVGSKNS-SNSNRLAELAQRMGKRAFLIDDAKDIQE 265 (328)
T ss_dssp HHHHHHHH-HCSEEEEECCTTC-HHHHHHHHHHHHTTCEEEEESSGGGCCH
T ss_pred HHHHHHHH-hCCEEEEeCCCCC-chHHHHHHHHHHhCCCEEEeCChHHCCH
Confidence 34444544 3666666665544 3455678999999999999999888853
No 152
>3mwd_B ATP-citrate synthase; ATP-grAsp, phosphohistidine, organic acid, lyase, transferas; HET: CIT; 2.10A {Homo sapiens} PDB: 3mwe_B*
Probab=26.05 E-value=82 Score=26.26 Aligned_cols=40 Identities=8% Similarity=0.201 Sum_probs=24.0
Q ss_pred HHHHHHHhcCCeeEEEE-cCCCCchhhHHHHHHHHHhCCCCE
Q psy16564 57 HEAAKALDRREAQLCVL-ADNCDEPAYKKLVQALCSEHQIPL 97 (157)
Q Consensus 57 ~~v~KaL~kgkakLVIl-A~D~s~~~~~~~l~~lc~~~~Ipv 97 (157)
..+++++.+..++.|++ ++..++ .....+.++|+++++.+
T Consensus 94 ~ai~ea~~~~Gv~~vViiT~G~~e-~~~~~l~~~a~~~g~rl 134 (334)
T 3mwd_B 94 DSTMETMNYAQIRTIAIIAEGIPE-ALTRKLIKKADQKGVTI 134 (334)
T ss_dssp HHHHHHTTSTTCCEEEECCSCCCH-HHHHHHHHHHHHHTCEE
T ss_pred HHHHHHHHHCCCCEEEEECCCCCH-HHHHHHHHHHHHcCCEE
Confidence 45566666333544444 666666 55566777777777644
No 153
>3h7r_A Aldo-keto reductase; stress response, NADP, drought tolerance, oxidoreductase; HET: NAP; 1.40A {Arabidopsis thaliana}
Probab=26.00 E-value=87 Score=25.44 Aligned_cols=68 Identities=12% Similarity=0.146 Sum_probs=45.9
Q ss_pred ccHHHHHHHHHHHHHhcCCce------eeHHHHHHHHhcCCeeEEEEcCCCCchhhHHHHHHHHHhCCCCEEEeC
Q psy16564 33 SDINKALQQVLKTARAHDGLA------KGLHEAAKALDRREAQLCVLADNCDEPAYKKLVQALCSEHQIPLIKVD 101 (157)
Q Consensus 33 m~~~k~L~~lL~~A~~agklv------~G~~~v~KaL~kgkakLVIlA~D~s~~~~~~~l~~lc~~~~Ipvi~v~ 101 (157)
+++...+ ..|...+++|++. ....+..++++......+++--..++-.....+..+|+++||.++-+.
T Consensus 150 ~~~~e~~-~aL~~l~~~Gkir~iGvSn~~~~~l~~~~~~~~~~~~~~Q~~~~~~~~~~~l~~~~~~~gI~v~a~s 223 (331)
T 3h7r_A 150 PDITSTW-KAMEALYDSGKARAIGVSNFSSKKLTDLLNVARVTPAVNQVECHPVWQQQGLHELCKSKGVHLSGYS 223 (331)
T ss_dssp CCHHHHH-HHHHHHHHTTSBSSEEEESCCHHHHHHHHHHCSSCCSEEEEECBTTBCCHHHHHHHHHHTCEEEEES
T ss_pred CCHHHHH-HHHHHHHHcCCCcEEEecCCCHHHHHHHHHhcCCCceeEEeecccccCCHHHHHHHHHCCCEEEEeC
Confidence 4567777 7777888889864 346777777776655444444333332223568889999999998875
No 154
>4e7p_A Response regulator; DNA binding, cytosol, transcription regulator; 1.89A {Streptococcus pneumoniae} PDB: 4e7o_A
Probab=25.91 E-value=88 Score=20.96 Aligned_cols=50 Identities=18% Similarity=0.220 Sum_probs=35.0
Q ss_pred eeeHHHHHHHHhcCCeeEEEEcCCCCchhhHHHHHHHHHh-CCCCEEEeCC
Q psy16564 53 AKGLHEAAKALDRREAQLCVLADNCDEPAYKKLVQALCSE-HQIPLIKVDN 102 (157)
Q Consensus 53 v~G~~~v~KaL~kgkakLVIlA~D~s~~~~~~~l~~lc~~-~~Ipvi~v~s 102 (157)
.....++++.++.....+||+--+.+..+-...+..+-+. .++|++.+.+
T Consensus 52 ~~~~~~al~~l~~~~~dlii~D~~l~~~~g~~~~~~l~~~~~~~~ii~ls~ 102 (150)
T 4e7p_A 52 AKNGQEAIQLLEKESVDIAILDVEMPVKTGLEVLEWIRSEKLETKVVVVTT 102 (150)
T ss_dssp ESSHHHHHHHHTTSCCSEEEECSSCSSSCHHHHHHHHHHTTCSCEEEEEES
T ss_pred ECCHHHHHHHhhccCCCEEEEeCCCCCCcHHHHHHHHHHhCCCCeEEEEeC
Confidence 3467788889999999999998776554444445544443 5788888763
No 155
>2jlj_A YSCU, YOP proteins translocation protein U; cell membrane, transmembrane, yersinia pesits, protein trans type III secretion system, membrane; 1.3A {Yersinia pestis} PDB: 2jlh_A* 2v5g_A 2w0r_A
Probab=25.78 E-value=37 Score=25.31 Aligned_cols=27 Identities=15% Similarity=0.212 Sum_probs=20.6
Q ss_pred hHHHHHHHHHhCCCCEEEeCCHHHHHHHhC
Q psy16564 82 YKKLVQALCSEHQIPLIKVDNNKKLGEWAG 111 (157)
Q Consensus 82 ~~~~l~~lc~~~~Ipvi~v~sk~eLG~a~G 111 (157)
+...|..+|+++|||++.- ..|.+++-
T Consensus 81 ~A~~I~e~A~e~gVPi~e~---~~LAr~Ly 107 (144)
T 2jlj_A 81 QVQTVRKIAEEEGVPILQR---IPLARALY 107 (144)
T ss_dssp HHHHHHHHHHHHTCCEEEC---HHHHHHHH
T ss_pred HHHHHHHHHHHcCCCEEeC---HHHHHHHH
Confidence 6788999999999999854 34555543
No 156
>1uf3_A Hypothetical protein TT1561; metallo-dependent phosphatases, structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.10A {Thermus thermophilus} SCOP: d.159.1.6
Probab=25.76 E-value=91 Score=22.44 Aligned_cols=39 Identities=26% Similarity=0.254 Sum_probs=23.9
Q ss_pred HHhcCCeeEEEEcCCCCchh-----hHHHHHHHHHhCCCCEEEeC
Q psy16564 62 ALDRREAQLCVLADNCDEPA-----YKKLVQALCSEHQIPLIKVD 101 (157)
Q Consensus 62 aL~kgkakLVIlA~D~s~~~-----~~~~l~~lc~~~~Ipvi~v~ 101 (157)
.+++.++-+||++.|..... +...+..+ .+.++|++.+.
T Consensus 27 ~~~~~~~D~vi~~GDl~~~~~~~~~~~~~~~~l-~~~~~pv~~v~ 70 (228)
T 1uf3_A 27 LAPDTGADAIALIGNLMPKAAKSRDYAAFFRIL-SEAHLPTAYVP 70 (228)
T ss_dssp HHHHHTCSEEEEESCSSCTTCCHHHHHHHHHHH-GGGCSCEEEEC
T ss_pred HHhhcCCCEEEECCCCCCCCCCHHHHHHHHHHH-HhcCCcEEEEC
Confidence 33434688999999964311 22333333 34578999887
No 157
>1pii_A N-(5'phosphoribosyl)anthranilate isomerase; bifunctional(isomerase and synthase); 2.00A {Escherichia coli} SCOP: c.1.2.4 c.1.2.4 PDB: 1jcm_P* 2kzh_A
Probab=25.76 E-value=1.7e+02 Score=25.49 Aligned_cols=71 Identities=14% Similarity=0.087 Sum_probs=51.0
Q ss_pred eeeHHHHHHHHhcCCeeEEEEcCCCCchhhHHHHHHHHHhCCCC-EEEeCCHHHHHHHhCCCccccCCCccceeeeEEEE
Q psy16564 53 AKGLHEAAKALDRREAQLCVLADNCDEPAYKKLVQALCSEHQIP-LIKVDNNKKLGEWAGLSKLDNMGKARKVVGCSCVV 131 (157)
Q Consensus 53 v~G~~~v~KaL~kgkakLVIlA~D~s~~~~~~~l~~lc~~~~Ip-vi~v~sk~eLG~a~G~~~~~~~gk~rki~~~s~va 131 (157)
+.=..|+..+-.-|---.++++.--++ .....+..+|++.|.. ++.+.+.+||-+|+-.. +-+++
T Consensus 117 I~d~~Qi~ea~~~GAD~ILLi~a~l~~-~~l~~l~~~a~~lgm~~LvEvh~~eE~~~A~~lg-------------a~iIG 182 (452)
T 1pii_A 117 IIDPYQIYLARYYQADACLLMLSVLDD-DQYRQLAAVAHSLEMGVLTEVSNEEEQERAIALG-------------AKVVG 182 (452)
T ss_dssp CCSHHHHHHHHHTTCSEEEEETTTCCH-HHHHHHHHHHHHTTCEEEEEECSHHHHHHHHHTT-------------CSEEE
T ss_pred cCCHHHHHHHHHcCCCEEEEEcccCCH-HHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHCC-------------CCEEE
Confidence 344447888777887677777777776 4555677889988885 45589999999987532 34588
Q ss_pred EecCch
Q psy16564 132 IKVRNW 137 (157)
Q Consensus 132 I~D~g~ 137 (157)
|.+.++
T Consensus 183 innr~L 188 (452)
T 1pii_A 183 INNRDL 188 (452)
T ss_dssp EESEET
T ss_pred EeCCCC
Confidence 987664
No 158
>4ds3_A Phosphoribosylglycinamide formyltransferase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.85A {Brucella melitensis BV}
Probab=25.69 E-value=1.2e+02 Score=23.42 Aligned_cols=39 Identities=15% Similarity=0.027 Sum_probs=25.2
Q ss_pred HHHHHhcCC--eeEEEEcCCCCchhhHHHHHHHHHhCCCCEEEeC
Q psy16564 59 AAKALDRRE--AQLCVLADNCDEPAYKKLVQALCSEHQIPLIKVD 101 (157)
Q Consensus 59 v~KaL~kgk--akLVIlA~D~s~~~~~~~l~~lc~~~~Ipvi~v~ 101 (157)
.+++++.+. +..+.+-+|-+. .. -..+|+++|||++.+.
T Consensus 24 ll~~~~~~~l~~~I~~Visn~~~-a~---~l~~A~~~gIp~~~~~ 64 (209)
T 4ds3_A 24 LIRAAQAPGFPAEIVAVFSDKAE-AG---GLAKAEAAGIATQVFK 64 (209)
T ss_dssp HHHHHTSTTCSEEEEEEEESCTT-CT---HHHHHHHTTCCEEECC
T ss_pred HHHHHHcCCCCcEEEEEEECCcc-cH---HHHHHHHcCCCEEEeC
Confidence 455566664 566666666433 11 1368999999999875
No 159
>1tx2_A DHPS, dihydropteroate synthase; folate biosynthesis, pterine, MA transferase; HET: 680; 1.83A {Bacillus anthracis} SCOP: c.1.21.1 PDB: 1tww_A* 1twz_A* 1tx0_A* 1tws_A* 3h21_A* 3h22_A* 3h23_A* 3h24_A* 3h26_A* 3h2a_A* 3h2c_A* 3h2e_A* 3h2f_A* 3h2m_A* 3h2n_A* 3h2o_A* 3tya_A* 3tyb_A* 3tyc_A* 3tyd_A* ...
Probab=25.63 E-value=2.7e+02 Score=22.64 Aligned_cols=85 Identities=12% Similarity=0.205 Sum_probs=46.4
Q ss_pred ceEEeeccccCCCCCCCCCCcccHHHHHHHHHHHHHhc-CC-ce---eeHHHHHHHHhcCCeeEEEEcCCCCchhhHHHH
Q psy16564 12 KIVVVQGTATDNVPSANDEGVSDINKALQQVLKTARAH-DG-LA---KGLHEAAKALDRREAQLCVLADNCDEPAYKKLV 86 (157)
Q Consensus 12 ~~~~~~~~~~~~~~~p~~~~~m~~~k~L~~lL~~A~~a-gk-lv---~G~~~v~KaL~kgkakLVIlA~D~s~~~~~~~l 86 (157)
-+|-|-++.|.|-+.|+.. +-.+.+.+ .+++..+.. +- +. .-......+|+.| +.+| +|++.......+
T Consensus 78 diIDIGgeStrPga~~v~~-~eE~~Rvv-pvI~~l~~~~~vpiSIDT~~~~V~~aAl~aG-a~iI---Ndvsg~~~d~~m 151 (297)
T 1tx2_A 78 HIIDIGGESTRPGFAKVSV-EEEIKRVV-PMIQAVSKEVKLPISIDTYKAEVAKQAIEAG-AHII---NDIWGAKAEPKI 151 (297)
T ss_dssp SEEEEESCC----CCCCCH-HHHHHHHH-HHHHHHHHHSCSCEEEECSCHHHHHHHHHHT-CCEE---EETTTTSSCTHH
T ss_pred CEEEECCCcCCCCCCCCCH-HHHHHHHH-HHHHHHHhcCCceEEEeCCCHHHHHHHHHcC-CCEE---EECCCCCCCHHH
Confidence 4678888888888776543 22344444 444544432 32 21 2345556667666 4444 666542223355
Q ss_pred HHHHHhCCCCEEEeCC
Q psy16564 87 QALCSEHQIPLIKVDN 102 (157)
Q Consensus 87 ~~lc~~~~Ipvi~v~s 102 (157)
..++.+++.|++....
T Consensus 152 ~~~aa~~g~~vVlmh~ 167 (297)
T 1tx2_A 152 AEVAAHYDVPIILMHN 167 (297)
T ss_dssp HHHHHHHTCCEEEECC
T ss_pred HHHHHHhCCcEEEEeC
Confidence 6688999999998764
No 160
>3nra_A Aspartate aminotransferase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: LLP; 2.15A {Rhodobacter sphaeroides}
Probab=25.61 E-value=1.1e+02 Score=23.98 Aligned_cols=44 Identities=11% Similarity=0.102 Sum_probs=27.6
Q ss_pred HHHHHHHhcCCeeEEEEcC------CCCchhhHHHHHHHHHhCCCCEEEeC
Q psy16564 57 HEAAKALDRREAQLCVLAD------NCDEPAYKKLVQALCSEHQIPLIKVD 101 (157)
Q Consensus 57 ~~v~KaL~kgkakLVIlA~------D~s~~~~~~~l~~lc~~~~Ipvi~v~ 101 (157)
....++|.. +.++|++.. .+-+....+.|.++|+++++.++.=+
T Consensus 170 ~~l~~~l~~-~~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De 219 (407)
T 3nra_A 170 TGLEEAFKA-GARVFLFSNPNNPAGVVYSAEEIGQIAALAARYGATVIADQ 219 (407)
T ss_dssp HHHHHHHHT-TCCEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEC
T ss_pred HHHHHHHhh-CCcEEEEcCCCCCCCcccCHHHHHHHHHHHHHcCCEEEEEc
Confidence 445555554 566666643 22222446778899999999888643
No 161
>3n53_A Response regulator receiver modulated diguanylate; diguanylate cyclase, protein structure I II(PSI II), NYSGXRC, structural genomics; 2.20A {Pelobacter carbinolicus} SCOP: c.23.1.0
Probab=25.60 E-value=45 Score=22.08 Aligned_cols=70 Identities=19% Similarity=0.179 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHhcCCceeeHHHHHHHHhcCCeeEEEEcCCCCchhhHHHHHHHHHh---CCCCEEEeCCHHH
Q psy16564 35 INKALQQVLKTARAHDGLAKGLHEAAKALDRREAQLCVLADNCDEPAYKKLVQALCSE---HQIPLIKVDNNKK 105 (157)
Q Consensus 35 ~~k~L~~lL~~A~~agklv~G~~~v~KaL~kgkakLVIlA~D~s~~~~~~~l~~lc~~---~~Ipvi~v~sk~e 105 (157)
....+..+|.... .=.......++++.++.....+||+--+.+..+-...+..+-.. .++|++.+.+..+
T Consensus 15 ~~~~l~~~l~~~~-~v~~~~~~~~a~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~~ii~~s~~~~ 87 (140)
T 3n53_A 15 SRIELKNFLDSEY-LVIESKNEKEALEQIDHHHPDLVILDMDIIGENSPNLCLKLKRSKGLKNVPLILLFSSEH 87 (140)
T ss_dssp HHHHHHHHHTTTS-EEEEESSHHHHHHHHHHHCCSEEEEETTC------CHHHHHHTSTTCTTCCEEEEECC--
T ss_pred HHHHHHHHHHhcc-eEEEeCCHHHHHHHHhcCCCCEEEEeCCCCCCcHHHHHHHHHcCcccCCCCEEEEecCCC
Confidence 4445555554431 11123456778888888889999998766543333344444443 5899998775443
No 162
>2h9a_B CO dehydrogenase/acetyl-COA synthase, iron- sulfur protein; heterodimer, beta-alpha-barrels, oxidoreductase; HET: B12; 1.90A {Carboxydothermus hydrogenoformans} PDB: 2ycl_B*
Probab=25.52 E-value=2.1e+02 Score=23.54 Aligned_cols=82 Identities=15% Similarity=0.128 Sum_probs=47.6
Q ss_pred ceEEeeccccCCCCCCCCCCcccHHHHHHHHHHHHHhc-C-Ccee-eH-------HHHHHHHhcCCe-eEEEEcCCCCch
Q psy16564 12 KIVVVQGTATDNVPSANDEGVSDINKALQQVLKTARAH-D-GLAK-GL-------HEAAKALDRREA-QLCVLADNCDEP 80 (157)
Q Consensus 12 ~~~~~~~~~~~~~~~p~~~~~m~~~k~L~~lL~~A~~a-g-klv~-G~-------~~v~KaL~kgka-kLVIlA~D~s~~ 80 (157)
-+|-|.++.|+|-+.|+-..+ .+ .+++..+.. + -+.. +. .....+++.+.- +-+| +|++..
T Consensus 89 diIDIg~~StrP~~~~vs~ee-----e~-~vV~~v~~~~~vplsI~DT~~~~~~~~V~eaal~aga~~k~iI--Ndvs~~ 160 (310)
T 2h9a_B 89 DIVALRLVSAHPDGQNRSGAE-----LA-EVCKAVADAIDVPLMIIGCGVEEKDAEIFPVIGEALSGRNCLL--SSATKD 160 (310)
T ss_dssp SEEEEECGGGCTTTTCCCHHH-----HH-HHHHHHHHHCSSCEEEECCSCHHHHHHHHHHHHHHTTTSCCEE--EEECTT
T ss_pred cEEEEeCccCCCCCCCCCHHH-----HH-HHHHHHHHhCCceEEEECCCCCCCCHHHHHHHHHhCCCCCCEE--EECCCC
Confidence 467788888888776654333 33 244433332 3 4666 54 344556666642 3333 333332
Q ss_pred hhHHHHHHHHHhCCCCEEEeCC
Q psy16564 81 AYKKLVQALCSEHQIPLIKVDN 102 (157)
Q Consensus 81 ~~~~~l~~lc~~~~Ipvi~v~s 102 (157)
+. ..+..+|.+++.|++....
T Consensus 161 ~~-~~~~~~aa~~g~~vv~m~~ 181 (310)
T 2h9a_B 161 NY-KPIVATCMVHGHSVVASAP 181 (310)
T ss_dssp TH-HHHHHHHHHHTCEEEEECS
T ss_pred cc-HHHHHHHHHhCCCEEEECh
Confidence 34 3566789999999999775
No 163
>1svv_A Threonine aldolase; structural genomics, structural genomics of pathogenic proto SGPP, protein structure initiative, PSI; 2.10A {Leishmania major} SCOP: c.67.1.1
Probab=25.46 E-value=1.1e+02 Score=23.39 Aligned_cols=46 Identities=17% Similarity=0.197 Sum_probs=29.1
Q ss_pred HHHHHHHhcC------CeeEEEEcCC-----CCchhhHHHHHHHHHhCCCCEEEeCC
Q psy16564 57 HEAAKALDRR------EAQLCVLADN-----CDEPAYKKLVQALCSEHQIPLIKVDN 102 (157)
Q Consensus 57 ~~v~KaL~kg------kakLVIlA~D-----~s~~~~~~~l~~lc~~~~Ipvi~v~s 102 (157)
....++|.+. +.++|++..- +-+....+.|.++|+++++.++.=+.
T Consensus 129 ~~l~~~l~~~~~~~~~~~~~v~~~~~~ptG~~~~~~~l~~i~~~~~~~~~~li~De~ 185 (359)
T 1svv_A 129 ADIESALHENRSEHMVIPKLVYISNTTEVGTQYTKQELEDISASCKEHGLYLFLDGA 185 (359)
T ss_dssp HHHHHHHHHSCSTTSCEEEEEEEESSCTTSCCCCHHHHHHHHHHHHHHTCEEEEECT
T ss_pred HHHHHHHHHHHhccCCCceEEEEEcCCCCceecCHHHHHHHHHHHHHhCCEEEEEcc
Confidence 4445555544 3788888642 22223467788999999998876543
No 164
>2ywr_A Phosphoribosylglycinamide formyltransferase; rossmann fold, structural genomics, NPPSFA; 1.77A {Aquifex aeolicus}
Probab=25.38 E-value=1.1e+02 Score=23.48 Aligned_cols=41 Identities=12% Similarity=0.276 Sum_probs=26.1
Q ss_pred HHHHHHHhcCC--eeEEEEcCCCCchhhHHHHHHHHHhCCCCEEEeC
Q psy16564 57 HEAAKALDRRE--AQLCVLADNCDEPAYKKLVQALCSEHQIPLIKVD 101 (157)
Q Consensus 57 ~~v~KaL~kgk--akLVIlA~D~s~~~~~~~l~~lc~~~~Ipvi~v~ 101 (157)
..+++++.++. +..+.+-.|-+. . ....+|+++|||++.+.
T Consensus 16 ~~~l~~l~~~~~~~~i~~Vvs~~~~-~---~~~~~A~~~gIp~~~~~ 58 (216)
T 2ywr_A 16 QAIIDAIESGKVNASIELVISDNPK-A---YAIERCKKHNVECKVIQ 58 (216)
T ss_dssp HHHHHHHHTTSSCEEEEEEEESCTT-C---HHHHHHHHHTCCEEECC
T ss_pred HHHHHHHHhCCCCCeEEEEEeCCCC-h---HHHHHHHHcCCCEEEeC
Confidence 45667776664 355544444332 1 24678999999999865
No 165
>2oho_A Glutamate racemase; isomerase; 2.25A {Streptococcus pyogenes m1 gas} PDB: 2ohg_A 2ohv_A*
Probab=25.32 E-value=54 Score=25.93 Aligned_cols=39 Identities=21% Similarity=0.234 Sum_probs=28.6
Q ss_pred HHHHHhcCCeeEEEEcCCCCchhhHHHHHHHHHhCCCCEEEe
Q psy16564 59 AAKALDRREAQLCVLADNCDEPAYKKLVQALCSEHQIPLIKV 100 (157)
Q Consensus 59 v~KaL~kgkakLVIlA~D~s~~~~~~~l~~lc~~~~Ipvi~v 100 (157)
..+.|++..++++++|.+... .. .+..+-+..+||++.+
T Consensus 66 ~~~~L~~~g~d~iviaCNTas-~~--~l~~lr~~~~iPvigi 104 (273)
T 2oho_A 66 LVNFLLTQNVKMIVFACNTAT-AV--AWEEVKAALDIPVLGV 104 (273)
T ss_dssp HHHHHHTTTCSEEEECCHHHH-HH--HHHHHHHHCSSCEEES
T ss_pred HHHHHHHCCCCEEEEeCchHh-HH--HHHHHHHhCCCCEEec
Confidence 445566777999999998765 22 2566667789999984
No 166
>2oqx_A Tryptophanase; lyase, pyridoxal phosphate, tryptophan catabolism; HET: CME EPE; 1.90A {Escherichia coli} SCOP: c.67.1.2 PDB: 2c44_A 2v1p_A* 2v0y_A*
Probab=25.17 E-value=93 Score=25.34 Aligned_cols=35 Identities=17% Similarity=0.117 Sum_probs=24.2
Q ss_pred CCeeEEEEcC--C-----CCchhhHHHHHHHHHhCCCCEEEe
Q psy16564 66 REAQLCVLAD--N-----CDEPAYKKLVQALCSEHQIPLIKV 100 (157)
Q Consensus 66 gkakLVIlA~--D-----~s~~~~~~~l~~lc~~~~Ipvi~v 100 (157)
.+.++|++.. + +.+....+.|.++|+++|++++.=
T Consensus 182 ~~~~~vi~~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~D 223 (467)
T 2oqx_A 182 NNVPYIVATITSNSAGGQPVSLANLKAMYSIAKKYDIPVVMD 223 (467)
T ss_dssp GGCCCEEEESSBCGGGCBCCCHHHHHHHHHHHHHTTCCEEEE
T ss_pred CceeEEEEeccccCCCCccCCHHHHHHHHHHHHHcCCEEEEE
Confidence 3567777743 2 212245678899999999999865
No 167
>3auf_A Glycinamide ribonucleotide transformylase 1; structural genomics, riken structural genomics/proteomics in RSGI, rossmann fold; 2.07A {Symbiobacterium toebii}
Probab=25.12 E-value=1e+02 Score=24.11 Aligned_cols=40 Identities=8% Similarity=0.109 Sum_probs=24.5
Q ss_pred HHHHHHhcC--CeeEEEEcCCCCchhhHHHHHHHHHhCCCCEEEeC
Q psy16564 58 EAAKALDRR--EAQLCVLADNCDEPAYKKLVQALCSEHQIPLIKVD 101 (157)
Q Consensus 58 ~v~KaL~kg--kakLVIlA~D~s~~~~~~~l~~lc~~~~Ipvi~v~ 101 (157)
.+++++.++ .+.++.+-.|-+. . ....+|+++|||++.+.
T Consensus 38 ~~l~~l~~~~~~~~I~~Vvt~~~~-~---~~~~~A~~~gIp~~~~~ 79 (229)
T 3auf_A 38 AILDGCREGRIPGRVAVVISDRAD-A---YGLERARRAGVDALHMD 79 (229)
T ss_dssp HHHHHHHTTSSSEEEEEEEESSTT-C---HHHHHHHHTTCEEEECC
T ss_pred HHHHHHHhCCCCCeEEEEEcCCCc-h---HHHHHHHHcCCCEEEEC
Confidence 445556555 3455544445322 1 24678999999999765
No 168
>3h7u_A Aldo-keto reductase; stress response, NADP, drought tolerance, oxidoreductase; HET: NAP; 1.25A {Arabidopsis thaliana}
Probab=25.06 E-value=93 Score=25.27 Aligned_cols=68 Identities=13% Similarity=0.161 Sum_probs=45.2
Q ss_pred ccHHHHHHHHHHHHHhcCCce------eeHHHHHHHHhcCCeeEEEEcCCCCchhhHHHHHHHHHhCCCCEEEeC
Q psy16564 33 SDINKALQQVLKTARAHDGLA------KGLHEAAKALDRREAQLCVLADNCDEPAYKKLVQALCSEHQIPLIKVD 101 (157)
Q Consensus 33 m~~~k~L~~lL~~A~~agklv------~G~~~v~KaL~kgkakLVIlA~D~s~~~~~~~l~~lc~~~~Ipvi~v~ 101 (157)
+++...+ ..|...+++|++. ....+..++++......+++--..++-.....+..+|+++||.++-+.
T Consensus 154 ~~~~e~~-~aL~~l~~~Gkir~iGvSn~~~~~l~~~~~~~~~~~~~~Q~~~~~~~~~~~l~~~~~~~gI~v~a~s 227 (335)
T 3h7u_A 154 VDIPSTW-KAMEALYDSGKARAIGVSNFSTKKLADLLELARVPPAVNQVECHPSWRQTKLQEFCKSKGVHLSAYS 227 (335)
T ss_dssp CCHHHHH-HHHHHHHHTTSBSSEEEESCCHHHHHHHHHHCSSCCSEEEEECBTTBCCHHHHHHHHHHTCEEEEES
T ss_pred CCHHHHH-HHHHHHHHcCCccEEEecCCCHHHHHHHHHhCCCCeEEEecccccccCCHHHHHHHHHCCCEEEEec
Confidence 4567777 7777888889864 345677777776555444443333332223567889999999999875
No 169
>1pav_A Hypothetical protein TA1170/TA1414; structural genomics, structure, fast NMR, semiautomated analysis; NMR {Thermoplasma acidophilum} SCOP: d.68.3.3
Probab=24.87 E-value=34 Score=21.95 Aligned_cols=38 Identities=24% Similarity=0.240 Sum_probs=25.3
Q ss_pred HHHHHHhc---CCeeEEEEcCCCCchhhHHHHHHHHHhCCCCEEE
Q psy16564 58 EAAKALDR---REAQLCVLADNCDEPAYKKLVQALCSEHQIPLIK 99 (157)
Q Consensus 58 ~v~KaL~k---gkakLVIlA~D~s~~~~~~~l~~lc~~~~Ipvi~ 99 (157)
.+.++|++ |+ .|.|++.|... ...|+.+|++.|-.+..
T Consensus 22 ~~k~al~~l~~G~-~L~V~~dd~~a---~~di~~~~~~~G~~~~~ 62 (78)
T 1pav_A 22 ELIKAYKQAKVGE-VISVYSTDAGT---KKDAPAWIQKSGQELVG 62 (78)
T ss_dssp HHHHHHTTSCTTC-CEECCBSSSCH---HHHHHHHHHHHTEEECC
T ss_pred HHHHHHHcCCCCC-EEEEEECCccH---HHHHHHHHHHCCCEEEE
Confidence 34455554 43 47778887654 45789999998876653
No 170
>3ilh_A Two component response regulator; NYSGXRC, PSI-II, protein S initiative, structural genomics; 2.59A {Cytophaga hutchinsonii}
Probab=24.85 E-value=1e+02 Score=20.12 Aligned_cols=50 Identities=10% Similarity=0.049 Sum_probs=34.7
Q ss_pred eeeHHHHHHHHhc-----CCeeEEEEcCCCCchhhHHHHHHHHH-----hCCCCEEEeCC
Q psy16564 53 AKGLHEAAKALDR-----REAQLCVLADNCDEPAYKKLVQALCS-----EHQIPLIKVDN 102 (157)
Q Consensus 53 v~G~~~v~KaL~k-----gkakLVIlA~D~s~~~~~~~l~~lc~-----~~~Ipvi~v~s 102 (157)
.....+.+..++. ....+||+--+.+..+-...+..+-+ ..++|++.+.+
T Consensus 41 ~~~~~~a~~~l~~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~~~~ii~~t~ 100 (146)
T 3ilh_A 41 VTSGNAAINKLNELYAAGRWPSIICIDINMPGINGWELIDLFKQHFQPMKNKSIVCLLSS 100 (146)
T ss_dssp ESSHHHHHHHHHHHHTSSCCCSEEEEESSCSSSCHHHHHHHHHHHCGGGTTTCEEEEECS
T ss_pred cCCHHHHHHHHHHhhccCCCCCEEEEcCCCCCCCHHHHHHHHHHhhhhccCCCeEEEEeC
Confidence 4467788888887 78999999877655444445555544 36889888763
No 171
>3iyg_D T-complex protein 1 subunit delta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus}
Probab=24.79 E-value=1.4e+02 Score=26.15 Aligned_cols=50 Identities=12% Similarity=0.175 Sum_probs=33.0
Q ss_pred HHHHHHhcCCeeEEEE-----cCCCCchhhHHHHHHHHHhCCCCEEEeCC---HHHHHHHhCC
Q psy16564 58 EAAKALDRREAQLCVL-----ADNCDEPAYKKLVQALCSEHQIPLIKVDN---NKKLGEWAGL 112 (157)
Q Consensus 58 ~v~KaL~kgkakLVIl-----A~D~s~~~~~~~l~~lc~~~~Ipvi~v~s---k~eLG~a~G~ 112 (157)
..++.|.+-.+.+||+ +.|+++ ...+++.+++|-++.-.. .++|.+++|-
T Consensus 264 ~~le~I~~~g~~lvi~~k~i~~~~I~~-----~Al~~L~~~~I~av~~~~~~~le~ia~~tGa 321 (518)
T 3iyg_D 264 NLVKQIKKTGCNVLLIQKSILRDALSD-----LALHFLNKMKIMVVKDIEREDIEFICKTIGT 321 (518)
T ss_pred HHHHHHHhcCCCEEEEeccccccCcCH-----HHHHHHHHcCcEEEecCCHHHHHHHHHHhCC
Confidence 3455555566889999 888887 233445667898887554 4456666663
No 172
>3dzz_A Putative pyridoxal 5'-phosphate-dependent C-S LYA; putative PLP-dependent aminotransferase; HET: MSE LLP PG4; 1.61A {Lactobacillus delbrueckii subsp} SCOP: c.67.1.0
Probab=24.69 E-value=1.5e+02 Score=23.10 Aligned_cols=46 Identities=20% Similarity=0.356 Sum_probs=30.9
Q ss_pred HHHHHHHHhcCCeeEEEEcCCCCc------hhhHHHHHHHHHhCCCCEEEeC
Q psy16564 56 LHEAAKALDRREAQLCVLADNCDE------PAYKKLVQALCSEHQIPLIKVD 101 (157)
Q Consensus 56 ~~~v~KaL~kgkakLVIlA~D~s~------~~~~~~l~~lc~~~~Ipvi~v~ 101 (157)
..+..++|.+.+.++|++..=..| ..-.+.|.++|++++++++.=+
T Consensus 149 ~~~l~~~l~~~~~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De 200 (391)
T 3dzz_A 149 WADLEEKLATPSVRMMVFCNPHNPIGYAWSEEEVKRIAELCAKHQVLLISDE 200 (391)
T ss_dssp HHHHHHHHTSTTEEEEEEESSBTTTTBCCCHHHHHHHHHHHHHTTCEEEEEC
T ss_pred HHHHHHHHhccCceEEEEECCCCCCCcccCHHHHHHHHHHHHHCCCEEEEec
Confidence 456667776567888887542111 1345677889999999888644
No 173
>3b1s_B Flagellar biosynthetic protein FLHB; type III secretion system, protein transport, MEMB protein; 2.55A {Aquifex aeolicus}
Probab=30.25 E-value=16 Score=25.02 Aligned_cols=35 Identities=14% Similarity=0.213 Sum_probs=24.5
Q ss_pred EEcCCCCchhhHHHHHHHHHhCCCCEEEeCCHHHHHHHhC
Q psy16564 72 VLADNCDEPAYKKLVQALCSEHQIPLIKVDNNKKLGEWAG 111 (157)
Q Consensus 72 IlA~D~s~~~~~~~l~~lc~~~~Ipvi~v~sk~eLG~a~G 111 (157)
++|.=.+. +...+.+.++++|||++.- ..|.+++-
T Consensus 20 VvAKG~~~--~A~~I~e~A~e~~VPi~e~---~~LAr~Ly 54 (87)
T 3b1s_B 20 VVAKGKGT--IAQKIVEIAENYSIPVVRK---PELARALY 54 (87)
Confidence 45665554 6778999999999999753 34555554
No 174
>2dwu_A Glutamate racemase; isomerase; HET: DGL; 1.60A {Bacillus anthracis}
Probab=24.31 E-value=96 Score=24.51 Aligned_cols=41 Identities=29% Similarity=0.260 Sum_probs=30.2
Q ss_pred HHHHHHHhcCCeeEEEEcCCCCchhhHHHHHHHHHhCCCCEEEe
Q psy16564 57 HEAAKALDRREAQLCVLADNCDEPAYKKLVQALCSEHQIPLIKV 100 (157)
Q Consensus 57 ~~v~KaL~kgkakLVIlA~D~s~~~~~~~l~~lc~~~~Ipvi~v 100 (157)
.+..+.|.+..++++++|.+... .. .+..+-+..+||++-+
T Consensus 59 ~~~~~~L~~~g~d~IViACNTas-~~--~l~~lr~~~~iPVigi 99 (276)
T 2dwu_A 59 FEMVEFLKQFPLKALVVACNTAA-AA--TLAALQEALSIPVIGV 99 (276)
T ss_dssp HHHHHHHTTSCEEEEEECCHHHH-HH--HHHHHHHHCSSCEEES
T ss_pred HHHHHHHHHCCCCEEEEeCCcHH-HH--HHHHHHHHCCCCEEec
Confidence 44556677777999999998764 11 3666667789999974
No 175
>2pln_A HP1043, response regulator; signaling protein; 1.80A {Helicobacter pylori} PDB: 2hqo_A
Probab=24.28 E-value=1.1e+02 Score=19.97 Aligned_cols=61 Identities=11% Similarity=0.232 Sum_probs=36.2
Q ss_pred cHHHHHHHHHHHHHhcCCc---eeeHHHHHHHHhcCCeeEEEEcCCCCchhhHHHHHHHHHhC-CCCEEEeC
Q psy16564 34 DINKALQQVLKTARAHDGL---AKGLHEAAKALDRREAQLCVLADNCDEPAYKKLVQALCSEH-QIPLIKVD 101 (157)
Q Consensus 34 ~~~k~L~~lL~~A~~agkl---v~G~~~v~KaL~kgkakLVIlA~D~s~~~~~~~l~~lc~~~-~Ipvi~v~ 101 (157)
.....|..+|.. .|.- .....+++..+......+|| -.|.+...+.+.+... . ++|++.+.
T Consensus 29 ~~~~~l~~~L~~---~g~~v~~~~~~~~al~~l~~~~~dlvi-~~~~~g~~~~~~l~~~---~~~~~ii~ls 93 (137)
T 2pln_A 29 VLGGEIEKGLNV---KGFMADVTESLEDGEYLMDIRNYDLVM-VSDKNALSFVSRIKEK---HSSIVVLVSS 93 (137)
T ss_dssp HHHHHHHHHHHH---TTCEEEEESCHHHHHHHHHHSCCSEEE-ECSTTHHHHHHHHHHH---STTSEEEEEE
T ss_pred HHHHHHHHHHHH---cCcEEEEeCCHHHHHHHHHcCCCCEEE-EcCccHHHHHHHHHhc---CCCccEEEEe
Confidence 344555555554 2432 33456778888888888888 4444433344444333 5 89999875
No 176
>3rjt_A Lipolytic protein G-D-S-L family; PSI-biology, midwest center for structural genomics, MCSG, H; 1.50A {Alicyclobacillus acidocaldarius subsp}
Probab=24.22 E-value=50 Score=23.42 Aligned_cols=47 Identities=15% Similarity=0.355 Sum_probs=30.4
Q ss_pred eHHHHHHHHhcCCeeEEEEcC---CCCc--------hhhHHHHHHHHHhCCCCEEEeC
Q psy16564 55 GLHEAAKALDRREAQLCVLAD---NCDE--------PAYKKLVQALCSEHQIPLIKVD 101 (157)
Q Consensus 55 G~~~v~KaL~kgkakLVIlA~---D~s~--------~~~~~~l~~lc~~~~Ipvi~v~ 101 (157)
...+.++.+++..++++++.. .... ..+...+..+|++++++++-+.
T Consensus 118 ~l~~~i~~~~~~~~~vil~~p~~~~~~~~~~~~~~~~~~n~~~~~~a~~~~~~~vD~~ 175 (216)
T 3rjt_A 118 TLRHLVATTKPRVREMFLLSPFYLEPNRSDPMRKTVDAYIEAMRDVAASEHVPFVDVQ 175 (216)
T ss_dssp HHHHHHHHHGGGSSEEEEECCCCCCCCTTSHHHHHHHHHHHHHHHHHHHHTCCEECHH
T ss_pred HHHHHHHHHHhcCCeEEEECCCcCCCCcchHHHHHHHHHHHHHHHHHHHcCCeEEEcH
Confidence 345566677666788888852 1111 1255678888999999987543
No 177
>3p9x_A Phosphoribosylglycinamide formyltransferase; structural genomics, PSI-biology, protein STRU initiative; 1.90A {Bacillus halodurans}
Probab=24.16 E-value=1.3e+02 Score=23.43 Aligned_cols=39 Identities=15% Similarity=0.249 Sum_probs=24.8
Q ss_pred HHHHHhcCC--eeEEEEcCCCCchhhHHHHHHHHHhCCCCEEEeC
Q psy16564 59 AAKALDRRE--AQLCVLADNCDEPAYKKLVQALCSEHQIPLIKVD 101 (157)
Q Consensus 59 v~KaL~kgk--akLVIlA~D~s~~~~~~~l~~lc~~~~Ipvi~v~ 101 (157)
.+.+++.|. +..+.+-+|-+. ..+..+|+++|||++.+.
T Consensus 19 li~~~~~~~l~~eI~~Visn~~~----a~v~~~A~~~gIp~~~~~ 59 (211)
T 3p9x_A 19 IIQSQKAGQLPCEVALLITDKPG----AKVVERVKVHEIPVCALD 59 (211)
T ss_dssp HHHHHHTTCCSSEEEEEEESCSS----SHHHHHHHTTTCCEEECC
T ss_pred HHHHHHcCCCCcEEEEEEECCCC----cHHHHHHHHcCCCEEEeC
Confidence 344444554 455655556433 146679999999998765
No 178
>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}
Probab=24.07 E-value=34 Score=26.85 Aligned_cols=35 Identities=14% Similarity=0.089 Sum_probs=24.1
Q ss_pred CeeEEEEcCCCCchhhHHHHHHHHHhCCCCEEEeCCHH
Q psy16564 67 EAQLCVLADNCDEPAYKKLVQALCSEHQIPLIKVDNNK 104 (157)
Q Consensus 67 kakLVIlA~D~s~~~~~~~l~~lc~~~~Ipvi~v~sk~ 104 (157)
.+.|||.|.|.++ .-..+...|+ .+|||..+++.+
T Consensus 91 ~adLVIaAT~d~~--~N~~I~~~ak-~gi~VNvvD~p~ 125 (223)
T 3dfz_A 91 NVFFIVVATNDQA--VNKFVKQHIK-NDQLVNMASSFS 125 (223)
T ss_dssp SCSEEEECCCCTH--HHHHHHHHSC-TTCEEEC-----
T ss_pred CCCEEEECCCCHH--HHHHHHHHHh-CCCEEEEeCCcc
Confidence 4789998888765 5667778888 999988777643
No 179
>2vi8_A Serine hydroxymethyltransferase; SHMT, E53Q, FTHF, enzyme memory, pyridoxal phosphate, one-carbon metabolism, PLP-dependent enzymes; HET: PLP; 1.67A {Bacillus stearothermophilus} PDB: 2vi9_A* 2via_A* 2vib_A* 1kkj_A* 1kkp_A* 1kl1_A* 1kl2_A* 1yjs_A* 2w7f_A* 2w7d_A* 2w7e_A* 2w7g_A* 2w7h_A* 1yjz_A* 1yjy_A* 2vgu_A* 2vgs_A* 2vgt_A* 2vgv_A* 2vgw_A* ...
Probab=23.98 E-value=68 Score=25.35 Aligned_cols=46 Identities=11% Similarity=-0.017 Sum_probs=28.3
Q ss_pred HHHHHHHhcCCeeEEEEc-CCCCchhhHHHHHHHHHhCCCCEEEeCC
Q psy16564 57 HEAAKALDRREAQLCVLA-DNCDEPAYKKLVQALCSEHQIPLIKVDN 102 (157)
Q Consensus 57 ~~v~KaL~kgkakLVIlA-~D~s~~~~~~~l~~lc~~~~Ipvi~v~s 102 (157)
.+..++|...+.++|++. ...+...-.+.|.++|+++|++++.=+.
T Consensus 153 ~~l~~~i~~~~~~~v~~~~~~~~~~~~l~~i~~l~~~~~~~li~Dea 199 (405)
T 2vi8_A 153 DDVREKARLHRPKLIVAAAAAYPRIIDFAKFREIADEVGAYLMVDMA 199 (405)
T ss_dssp HHHHHHHHHHCCSEEEECCSSCCSCCCHHHHHHHHHHHTCEEEEECT
T ss_pred HHHHHHHHhcCCeEEEEeCCCCCccCCHHHHHHHHHHcCCEEEEEcc
Confidence 445555554345677774 2333222357789999999998876553
No 180
>3gi1_A LBP, laminin-binding protein of group A streptococci; zinc-binding receptor, metal-binding, helical backbone, alpha/beta domains; 2.45A {Streptococcus pyogenes} PDB: 3hjt_A
Probab=23.95 E-value=1.2e+02 Score=24.20 Aligned_cols=51 Identities=16% Similarity=0.090 Sum_probs=30.8
Q ss_pred CCceeeHHHHHHHHhcC-CeeEE-EEc----CCCCchhhHHHHHHHHHhCCCCEEEeC
Q psy16564 50 DGLAKGLHEAAKALDRR-EAQLC-VLA----DNCDEPAYKKLVQALCSEHQIPLIKVD 101 (157)
Q Consensus 50 gklv~G~~~v~KaL~kg-kakLV-IlA----~D~s~~~~~~~l~~lc~~~~Ipvi~v~ 101 (157)
++.+.-.+.+...+.+. ....+ +.. .+.++ .....+..++++++|++++++
T Consensus 179 ~~~~v~~H~af~Yf~~~yGl~~~~~~~~~~~~eps~-~~l~~l~~~ik~~~v~~if~e 235 (286)
T 3gi1_A 179 SKTFVTQHTAFSYLAKRFGLKQLGISGISPEQEPSP-RQLKEIQDFVKEYNVKTIFAE 235 (286)
T ss_dssp CCEEEEEESCCHHHHHHTTCEEEEEECSCC---CCH-HHHHHHHHHHHHTTCCEEEEC
T ss_pred CCEEEEECCchHHHHHHCCCeEeeccccCCCCCCCH-HHHHHHHHHHHHcCCCEEEEe
Confidence 44444455566666552 12222 222 24555 566678889999999999988
No 181
>4hb7_A Dihydropteroate synthase; transferase; 1.95A {Staphylococcus aureus} PDB: 1ad1_A 1ad4_A*
Probab=23.92 E-value=2.4e+02 Score=22.94 Aligned_cols=83 Identities=14% Similarity=0.120 Sum_probs=48.9
Q ss_pred ceEEeeccccCCCCCCCCCCcccHHHHHHHHHHHHHhcCCce----eeHHHHHHHHhcCCeeEEEEcCCCCchhhHHHHH
Q psy16564 12 KIVVVQGTATDNVPSANDEGVSDINKALQQVLKTARAHDGLA----KGLHEAAKALDRREAQLCVLADNCDEPAYKKLVQ 87 (157)
Q Consensus 12 ~~~~~~~~~~~~~~~p~~~~~m~~~k~L~~lL~~A~~agklv----~G~~~v~KaL~kgkakLVIlA~D~s~~~~~~~l~ 87 (157)
.+|-|-++.|-|-+.|+-..+ .+++.+ -+|+.-++.+-.+ +=..-...+|+.| +.+| +|++-......+.
T Consensus 45 diIDIGgeSTRPga~~vs~ee-E~~Rv~-pvi~~l~~~~v~iSIDT~~~~Va~~al~aG-a~iI---NDVs~g~~d~~m~ 118 (270)
T 4hb7_A 45 DIIDVGGVSTRPGHEMVTLEE-ELNRVL-PVVEAIVGFDVKISVDTFRSEVAEACLKLG-VDMI---NDQWAGLYDHRMF 118 (270)
T ss_dssp SEEEEESCCCSTTCCCCCHHH-HHHHHH-HHHHHHTTSSSEEEEECSCHHHHHHHHHHT-CCEE---EETTTTSSCTHHH
T ss_pred CEEEECCccCCCCCCCCchHH-HHHHHH-HHHHHhhcCCCeEEEECCCHHHHHHHHHhc-ccee---ccccccccchhHH
Confidence 478899999999988864333 355555 4555444333211 1234455677766 4433 5654312223456
Q ss_pred HHHHhCCCCEEEe
Q psy16564 88 ALCSEHQIPLIKV 100 (157)
Q Consensus 88 ~lc~~~~Ipvi~v 100 (157)
..+.++++|++.-
T Consensus 119 ~~va~~~~~~vlM 131 (270)
T 4hb7_A 119 QIVAKYDAEIILM 131 (270)
T ss_dssp HHHHHTTCEEEEE
T ss_pred HHHHHcCCCeEEe
Confidence 7788899999864
No 182
>2jfq_A Glutamate racemase; cell WALL, isomerase, cell shape, peptidoglycan synthesis, peptidoglycan biosynthesis; HET: DGL; 2.15A {Staphylococcus aureus}
Probab=23.89 E-value=47 Score=26.63 Aligned_cols=42 Identities=26% Similarity=0.214 Sum_probs=30.8
Q ss_pred HHHHHHHhcCCeeEEEEcCCCCchhhHHHHHHHHHhCCCCEEEeC
Q psy16564 57 HEAAKALDRREAQLCVLADNCDEPAYKKLVQALCSEHQIPLIKVD 101 (157)
Q Consensus 57 ~~v~KaL~kgkakLVIlA~D~s~~~~~~~l~~lc~~~~Ipvi~v~ 101 (157)
.+..+.|++..++++++|.+... .+ .+..+-+..+||++-+-
T Consensus 74 ~~~~~~L~~~g~d~IVIaCNTas-~~--~l~~lr~~~~iPVigi~ 115 (286)
T 2jfq_A 74 VEIARKLMEFDIKMLVIACNTAT-AV--ALEYLQKTLSISVIGVI 115 (286)
T ss_dssp HHHHHHHTTSCCSEEEECCHHHH-HH--HHHHHHHHCSSEEEESH
T ss_pred HHHHHHHHHCCCCEEEEeCCchh-HH--HHHHHHHhCCCCEEecc
Confidence 34556777777999999999866 22 25666677899999843
No 183
>4f82_A Thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.85A {Burkholderia cenocepacia}
Probab=23.88 E-value=91 Score=23.43 Aligned_cols=53 Identities=13% Similarity=0.109 Sum_probs=37.3
Q ss_pred HHHHHHHHhcCCe-eEEEEcCCCCchhhHHHHHHHHHhCCCC--EEEeC-CHHHHHHHhCCC
Q psy16564 56 LHEAAKALDRREA-QLCVLADNCDEPAYKKLVQALCSEHQIP--LIKVD-NNKKLGEWAGLS 113 (157)
Q Consensus 56 ~~~v~KaL~kgka-kLVIlA~D~s~~~~~~~l~~lc~~~~Ip--vi~v~-sk~eLG~a~G~~ 113 (157)
..+....++...+ .++.|+.|... ...++|++++++ +-.+. ...+++++.|..
T Consensus 71 f~~~~~ef~~~g~d~VigIS~D~~~-----~~~~f~~~~~l~~~f~lLsD~~~~va~ayGv~ 127 (176)
T 4f82_A 71 YVEHAEQLRAAGIDEIWCVSVNDAF-----VMGAWGRDLHTAGKVRMMADGSAAFTHALGLT 127 (176)
T ss_dssp HHHHHHHHHHTTCCEEEEEESSCHH-----HHHHHHHHTTCTTTSEEEECTTCHHHHHHTCE
T ss_pred HHHHHHHHHhCCCCEEEEEeCCCHH-----HHHHHHHHhCCCCCceEEEcCchHHHHHhCCC
Confidence 3444556666667 89999998543 346788888887 55555 567999999975
No 184
>3u5r_E Uncharacterized protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, hypothetical protein; 2.05A {Sinorhizobium meliloti}
Probab=23.76 E-value=2.2e+02 Score=20.93 Aligned_cols=57 Identities=9% Similarity=0.009 Sum_probs=36.9
Q ss_pred HHHHHHHhcCCeeEEEEcCCCCc---hhhHHHHHHHHHhCCCCEEEeC-CHHHHHHHhCCC
Q psy16564 57 HEAAKALDRREAQLCVLADNCDE---PAYKKLVQALCSEHQIPLIKVD-NNKKLGEWAGLS 113 (157)
Q Consensus 57 ~~v~KaL~kgkakLVIlA~D~s~---~~~~~~l~~lc~~~~Ipvi~v~-sk~eLG~a~G~~ 113 (157)
.+..+.+....+.+|.|..|-.. .+....+..+++++++++-.+. ...++.+..|..
T Consensus 82 ~~l~~~~~~~~v~vv~Vs~d~~~~~~~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~v~ 142 (218)
T 3u5r_E 82 AKFAGDYAGQGLAVVAINSNDAQAFPEETLERVGAEVKAYGYGFPYLKDASQSVAKAYGAA 142 (218)
T ss_dssp HHHHHHHTTTTEEEEEEECSCTTTCGGGSHHHHHHHHHHHTCCSCEEECTTCHHHHHHTCC
T ss_pred HHHHHHHHhCCcEEEEEECCcccccccCCHHHHHHHHHHhCCCccEEECCccHHHHHcCCC
Confidence 33444444444788888776321 1345567788888888766654 567899999975
No 185
>2jfz_A Glutamate racemase; cell WALL, isomerase, cell shape, peptidoglycan synthesis, peptidoglycan biosynthesis; HET: 003 DGL; 1.86A {Helicobacter pylori} PDB: 2jfx_A* 2jfy_A* 2w4i_A*
Probab=23.62 E-value=37 Score=26.61 Aligned_cols=38 Identities=21% Similarity=0.327 Sum_probs=27.8
Q ss_pred HHHHhcCCeeEEEEcCCCCchhhHHHHHHHHHhCCCCEEEe
Q psy16564 60 AKALDRREAQLCVLADNCDEPAYKKLVQALCSEHQIPLIKV 100 (157)
Q Consensus 60 ~KaL~kgkakLVIlA~D~s~~~~~~~l~~lc~~~~Ipvi~v 100 (157)
.+.|++..+.++++|.+... .+ .+..+-+..+||++.+
T Consensus 55 ~~~L~~~g~d~iviaCNTa~-~~--~~~~lr~~~~iPvigi 92 (255)
T 2jfz_A 55 LDFFKPHEIELLIVACNTAS-AL--ALEEMQKYSKIPIVGV 92 (255)
T ss_dssp HHHHGGGCCSCEEECCHHHH-HH--THHHHHHHCSSCEECS
T ss_pred HHHHHHCCCCEEEEeCchhh-HH--HHHHHHHhCCCCEEee
Confidence 34566667999999998865 22 3566667789999973
No 186
>2wfc_A Peroxiredoxin 5, PRDX5; oxidoreductase, antioxidant enzymes; 1.75A {Arenicola marina}
Probab=23.52 E-value=91 Score=22.34 Aligned_cols=48 Identities=13% Similarity=0.137 Sum_probs=33.0
Q ss_pred HHHhcCCe-eEEEEcCCCCchhhHHHHHHHHHhCCCC--EEEe-CCHHHHHHHhCCC
Q psy16564 61 KALDRREA-QLCVLADNCDEPAYKKLVQALCSEHQIP--LIKV-DNNKKLGEWAGLS 113 (157)
Q Consensus 61 KaL~kgka-kLVIlA~D~s~~~~~~~l~~lc~~~~Ip--vi~v-~sk~eLG~a~G~~ 113 (157)
+.++...+ .+|.|+.|..+ .+..+++++++| +-.+ +...+++++.|..
T Consensus 60 ~~~~~~gv~~vv~Is~d~~~-----~~~~~~~~~~~~~~fp~l~D~~~~~~~~~gv~ 111 (167)
T 2wfc_A 60 AAIHGKGVDIIACMAVNDSF-----VMDAWGKAHGADDKVQMLADPGGAFTKAVDME 111 (167)
T ss_dssp HHHHHTTCCEEEEEESSCHH-----HHHHHHHHTTCTTTSEEEECTTSHHHHHTTCE
T ss_pred HHHHHCCCCEEEEEeCCCHH-----HHHHHHHhcCCCcceEEEECCCCcHHHHcCCc
Confidence 33444568 88989887422 356678888887 5444 4567899999974
No 187
>1wvf_A 4-cresol dehydrogenase [hydroxylating] flavoprote subunit; flavoprotein, electron-transfer, FAD, oxidoreductase; HET: FAD; 1.30A {Pseudomonas putida} SCOP: d.58.32.1 d.145.1.1 PDB: 1wve_A* 1dii_A* 1diq_A*
Probab=23.50 E-value=1.3e+02 Score=26.00 Aligned_cols=78 Identities=18% Similarity=0.272 Sum_probs=46.9
Q ss_pred ccCCCCCCCCCCcccHHHHHHHHHHHHHhcCCceeeHHHHHHHH--------hcCCeeEEEEcCCCCchhhHHHHHHHHH
Q psy16564 20 ATDNVPSANDEGVSDINKALQQVLKTARAHDGLAKGLHEAAKAL--------DRREAQLCVLADNCDEPAYKKLVQALCS 91 (157)
Q Consensus 20 ~~~~~~~p~~~~~m~~~k~L~~lL~~A~~agklv~G~~~v~KaL--------~kgkakLVIlA~D~s~~~~~~~l~~lc~ 91 (157)
++|+...|--.+++++...+ +-|........+..+.......- -.+.+..|+...+.++ +. .+..+|.
T Consensus 2 ~~~~~~~p~~~~~~~~~~~~-~~L~~~l~~~~v~~~~~~~~~y~~d~~~~~~~~~~p~~vv~P~s~~e--v~-~~v~~a~ 77 (520)
T 1wvf_A 2 EQNNAVLPKGVTQGEFNKAV-QKFRALLGDDNVLVESDQLVPYNKIMMPVENAAHAPSAAVTATTVEQ--VQ-GVVKICN 77 (520)
T ss_dssp ----CCCCTTCCHHHHHHHH-HHHHHHHCGGGEECSHHHHHHHHCCCSSSCGGGGCCSEEEECCSHHH--HH-HHHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHH-HHHHHhcCCCeEecCcHHHHHHhcccccccccCCCCCEEEecCCHHH--HH-HHHHHHH
Confidence 45666677666666666665 44444333344666554433221 1345788888888754 54 4667999
Q ss_pred hCCCCEEEeC
Q psy16564 92 EHQIPLIKVD 101 (157)
Q Consensus 92 ~~~Ipvi~v~ 101 (157)
++++|++...
T Consensus 78 ~~~~pv~~~g 87 (520)
T 1wvf_A 78 EHKIPIWTIS 87 (520)
T ss_dssp HHTCCEEEES
T ss_pred HCCCcEEEEc
Confidence 9999999866
No 188
>2oqr_A Sensory transduction protein REGX3; response regulator, winged-helix-turn-helix, DNA-binding, 3D swapping, two component system; 2.03A {Mycobacterium tuberculosis H37RV}
Probab=23.45 E-value=1.3e+02 Score=21.63 Aligned_cols=66 Identities=18% Similarity=0.184 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHHhcCCce---eeHHHHHHHHhcCCeeEEEEcCCCCchhhHHHHHHHHHhCCCCEEEeCCH
Q psy16564 35 INKALQQVLKTARAHDGLA---KGLHEAAKALDRREAQLCVLADNCDEPAYKKLVQALCSEHQIPLIKVDNN 103 (157)
Q Consensus 35 ~~k~L~~lL~~A~~agklv---~G~~~v~KaL~kgkakLVIlA~D~s~~~~~~~l~~lc~~~~Ipvi~v~sk 103 (157)
+...|..+|.. .|.-+ ....+.+..+......+||+--+-+..+-...+..+.+..++|++.+.+.
T Consensus 16 ~~~~l~~~L~~---~g~~v~~~~~~~~al~~~~~~~~dlvllD~~l~~~~g~~~~~~l~~~~~~~ii~lt~~ 84 (230)
T 2oqr_A 16 LADPLAFLLRK---EGFEATVVTDGPAALAEFDRAGADIVLLDLMLPGMSGTDVCKQLRARSSVPVIMVTAR 84 (230)
T ss_dssp HHHHHHHHHHH---TTCEEEEECSHHHHHHHHHHHCCSEEEEESSCSSSCHHHHHHHHHHHCSCSEEEEECC
T ss_pred HHHHHHHHHHH---CCCEEEEECCHHHHHHHHhccCCCEEEEECCCCCCCHHHHHHHHHcCCCCCEEEEeCC
Confidence 45556566653 24322 33466777777777888888766544333444555555578999987643
No 189
>1ax4_A Tryptophanase; tryptophan biosynthesis, tryptophan indole-lyase, pyridoxal 5'-phosphate, monovalent cation binding site; HET: LLP; 2.10A {Proteus vulgaris} SCOP: c.67.1.2
Probab=23.36 E-value=1.3e+02 Score=24.51 Aligned_cols=36 Identities=17% Similarity=0.122 Sum_probs=25.1
Q ss_pred CCeeEEEEcCCC-------CchhhHHHHHHHHHhCCCCEEEeC
Q psy16564 66 REAQLCVLADNC-------DEPAYKKLVQALCSEHQIPLIKVD 101 (157)
Q Consensus 66 gkakLVIlA~D~-------s~~~~~~~l~~lc~~~~Ipvi~v~ 101 (157)
++.++|++..=. -+....+.|.++|+++|++++.=+
T Consensus 182 ~~~~~vi~~~~~np~gG~~~~~~~l~~i~~la~~~gi~li~De 224 (467)
T 1ax4_A 182 DNIVAIVSTVTCNSAGGQPVSMSNLKEVYEIAKQHGIFVVMDS 224 (467)
T ss_dssp GGEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHHTCCEEEEC
T ss_pred CCeeEEEEeccccCCCccCCChhHHHHHHHHHHHcCCEEEEEc
Confidence 367888885321 122456778999999999998754
No 190
>1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A
Probab=23.35 E-value=96 Score=24.11 Aligned_cols=33 Identities=21% Similarity=0.346 Sum_probs=27.2
Q ss_pred CeeEEEEcCCCCchhhHHHHHHHHHhCCCCEEEeC
Q psy16564 67 EAQLCVLADNCDEPAYKKLVQALCSEHQIPLIKVD 101 (157)
Q Consensus 67 kakLVIlA~D~s~~~~~~~l~~lc~~~~Ipvi~v~ 101 (157)
...+||.|.|. . .....+..+|.++++|++...
T Consensus 118 ~~DvVi~~~d~-~-~~r~~l~~~~~~~~~p~i~~~ 150 (251)
T 1zud_1 118 RADVVLDCTDN-M-ATRQEINAACVALNTPLITAS 150 (251)
T ss_dssp HCSEEEECCSS-H-HHHHHHHHHHHHTTCCEEEEE
T ss_pred cCCEEEECCCC-H-HHHHHHHHHHHHhCCCEEEEe
Confidence 47899999985 4 467789999999999998854
No 191
>3kc2_A Uncharacterized protein YKR070W; HAD-like, mitochondral protein, PSI, MCSG, structural genomi protein structure initiative; HET: MSE; 1.55A {Saccharomyces cerevisiae} PDB: 3rf6_A*
Probab=23.25 E-value=83 Score=26.01 Aligned_cols=46 Identities=15% Similarity=0.200 Sum_probs=32.0
Q ss_pred CceeeHHHHHHHHhcCCeeEEEEcCCCCchhhHHHHHHHHHhCCCCE
Q psy16564 51 GLAKGLHEAAKALDRREAQLCVLADNCDEPAYKKLVQALCSEHQIPL 97 (157)
Q Consensus 51 klv~G~~~v~KaL~kgkakLVIlA~D~s~~~~~~~l~~lc~~~~Ipv 97 (157)
...-|..+.++.|++...+++|+.++.+. ........+.+..|||+
T Consensus 29 ~~~p~a~~~l~~l~~~g~~~~~vTNn~~~-~~~~~~~~l~~~lgi~~ 74 (352)
T 3kc2_A 29 KPIAGASDALKLLNRNKIPYILLTNGGGF-SERARTEFISSKLDVDV 74 (352)
T ss_dssp EECTTHHHHHHHHHHTTCCEEEECSCCSS-CHHHHHHHHHHHHTSCC
T ss_pred eeCcCHHHHHHHHHHCCCEEEEEeCCCCC-CchHHHHHHHHhcCCCC
Confidence 45678888999998888999999998754 23333444555566653
No 192
>3jy6_A Transcriptional regulator, LACI family; NYSGXRC, PSI-II, protein S initiative, structural genomics; 1.97A {Lactobacillus brevis}
Probab=23.20 E-value=2e+02 Score=21.30 Aligned_cols=60 Identities=12% Similarity=0.138 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHhcCCce-e--------eHHHHHHHHhcCCeeEEEEcC-CCCchhhHHHHHHHHHhCCCCEEEeCC
Q psy16564 37 KALQQVLKTARAHDGLA-K--------GLHEAAKALDRREAQLCVLAD-NCDEPAYKKLVQALCSEHQIPLIKVDN 102 (157)
Q Consensus 37 k~L~~lL~~A~~agklv-~--------G~~~v~KaL~kgkakLVIlA~-D~s~~~~~~~l~~lc~~~~Ipvi~v~s 102 (157)
..+..+-..+.+.|.-+ . ...+.++.+...++.-+|+.. +. + .....+.+.+||++.++.
T Consensus 24 ~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~-~-----~~~~~l~~~~iPvV~i~~ 93 (276)
T 3jy6_A 24 ELFKGISSILESRGYIGVLFDANADIEREKTLLRAIGSRGFDGLILQSFSN-P-----QTVQEILHQQMPVVSVDR 93 (276)
T ss_dssp HHHHHHHHHHHTTTCEEEEEECTTCHHHHHHHHHHHHTTTCSEEEEESSCC-H-----HHHHHHHTTSSCEEEESC
T ss_pred HHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEecCCc-H-----HHHHHHHHCCCCEEEEec
Confidence 34444455566666411 1 123455566666655555544 44 3 233455778999998874
No 193
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=23.16 E-value=1.6e+02 Score=25.84 Aligned_cols=46 Identities=17% Similarity=0.279 Sum_probs=32.4
Q ss_pred HHHHHHHhcCC-eeEEEEcCCCCchhhHHHHHHHHHhCCCCEEEeCCH
Q psy16564 57 HEAAKALDRRE-AQLCVLADNCDEPAYKKLVQALCSEHQIPLIKVDNN 103 (157)
Q Consensus 57 ~~v~KaL~kgk-akLVIlA~D~s~~~~~~~l~~lc~~~~Ipvi~v~sk 103 (157)
-+|.++|+-=. |-+||=|.+--+ --...+-.+|.++++|.+.|=+|
T Consensus 115 ~Ev~raL~~~DgAvlVvda~~GV~-~qT~~v~~~a~~~~lp~i~fINK 161 (548)
T 3vqt_A 115 EDTYRVLTAVDSALVVIDAAKGVE-AQTRKLMDVCRMRATPVMTFVNK 161 (548)
T ss_dssp HHHHHHHHSCSEEEEEEETTTBSC-HHHHHHHHHHHHTTCCEEEEEEC
T ss_pred HHHHHHHHhcCceEEEeecCCCcc-cccHHHHHHHHHhCCceEEEEec
Confidence 46888887644 666666666555 45556778999999999976433
No 194
>1y8q_A Ubiquitin-like 1 activating enzyme E1A; SUMO, heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens} PDB: 1y8r_A* 3kyc_A* 3kyd_A*
Probab=23.13 E-value=65 Score=26.57 Aligned_cols=34 Identities=15% Similarity=0.175 Sum_probs=27.8
Q ss_pred CeeEEEEcCCCCchhhHHHHHHHHHhCCCCEEEeCC
Q psy16564 67 EAQLCVLADNCDEPAYKKLVQALCSEHQIPLIKVDN 102 (157)
Q Consensus 67 kakLVIlA~D~s~~~~~~~l~~lc~~~~Ipvi~v~s 102 (157)
...+||.|.|.. .....+..+|.+++||++...+
T Consensus 125 ~~dvVv~~~d~~--~~r~~ln~~~~~~~ip~i~~~~ 158 (346)
T 1y8q_A 125 QFDAVCLTCCSR--DVIVKVDQICHKNSIKFFTGDV 158 (346)
T ss_dssp TCSEEEEESCCH--HHHHHHHHHHHHTTCEEEEEEE
T ss_pred CCCEEEEcCCCH--HHHHHHHHHHHHcCCCEEEEee
Confidence 578999998864 4667899999999999998653
No 195
>2zv3_A PTH, peptidyl-tRNA hydrolase; cytoplasm, structural genomics, NPPSFA; 2.10A {Methanocaldococcus jannaschii}
Probab=22.94 E-value=1.6e+02 Score=20.49 Aligned_cols=68 Identities=13% Similarity=0.084 Sum_probs=39.2
Q ss_pred HHHHHHHhcCCeeEEEEcCCCCchhhHHHHHHHHHhCCCCEEEeCCHHHHHHHhCCCccccCCCccceeeeEEEEEecCc
Q psy16564 57 HEAAKALDRREAQLCVLADNCDEPAYKKLVQALCSEHQIPLIKVDNNKKLGEWAGLSKLDNMGKARKVVGCSCVVIKVRN 136 (157)
Q Consensus 57 ~~v~KaL~kgkakLVIlA~D~s~~~~~~~l~~lc~~~~Ipvi~v~sk~eLG~a~G~~~~~~~gk~rki~~~s~vaI~D~g 136 (157)
.........|..+.|+=+.|.++ +. .+...++..|+|...+-+- |..... | -...|++| -|+
T Consensus 39 ~~~~~W~~~g~~kivlk~~~e~~--l~-~l~~~a~~~gl~~~~i~DA-------G~Tei~----~---gt~Tvlai-gP~ 100 (115)
T 2zv3_A 39 RAVDEWLREGQKKVVVKVNSEKE--LI-DIYNKARSEGLPCSIIRDA-------GHTQLE----P---GTLTAVAI-GPE 100 (115)
T ss_dssp HHHHHHHHTTCCEEEEEESSHHH--HH-HHHHHHHHHTCCEEEEEEC-------C--------------EEEEEEE-EEE
T ss_pred HHHHHHHHCCCeEEEEecCCHHH--HH-HHHHHHHHcCCCEEEEEeC-------CceecC----C---CCEEEEEe-CcC
Confidence 34444555688888877877544 43 4667788889998666432 322110 1 13567888 566
Q ss_pred hhHHhh
Q psy16564 137 WFLIIC 142 (157)
Q Consensus 137 ~~~~~~ 142 (157)
..+.+.
T Consensus 101 ~~~~vd 106 (115)
T 2zv3_A 101 KDEKID 106 (115)
T ss_dssp CHHHHH
T ss_pred CHHHHH
Confidence 555443
No 196
>1q7s_A BIT1, protein CGI-147; apoptosis; 2.00A {Homo sapiens} SCOP: c.131.1.1
Probab=22.89 E-value=1.8e+02 Score=20.29 Aligned_cols=67 Identities=9% Similarity=-0.033 Sum_probs=40.1
Q ss_pred HHHHHHhcCCeeEEEEcCCCCchhhHHHHHHHHHhCCCCEEEeCCHHHHHHHhCCCccccCCCccceeeeEEEEEecCch
Q psy16564 58 EAAKALDRREAQLCVLADNCDEPAYKKLVQALCSEHQIPLIKVDNNKKLGEWAGLSKLDNMGKARKVVGCSCVVIKVRNW 137 (157)
Q Consensus 58 ~v~KaL~kgkakLVIlA~D~s~~~~~~~l~~lc~~~~Ipvi~v~sk~eLG~a~G~~~~~~~gk~rki~~~s~vaI~D~g~ 137 (157)
........|+.+.|+-+.|.++ +. .+...+++.|+|...+-+- |...+. | -...|++| -|+.
T Consensus 42 ~~~~W~~~g~~KVvlk~~~e~~--l~-~l~~~a~~~gl~~~~i~DA-------G~Tqi~----~---gt~Tvlai-gP~~ 103 (117)
T 1q7s_A 42 MLKQWEYCGQPKVVVKAPDEET--LI-ALLAHAKMLGLTVSLIQDA-------GRTQIA----P---GSQTVLGI-GPGP 103 (117)
T ss_dssp HHHHHHHTTCCEEEEEESSHHH--HH-HHHHHHHHTTCCEEEEEEC-------SSSSEE----E---EEEEEEEE-EEEE
T ss_pred HHHHHHhCCCeeEEEEcCCHHH--HH-HHHHHHHHCCCCEEEEEEC-------CCcccC----C---CCeEEEEe-ccCC
Confidence 3444445688777877777544 33 4677788899998665532 442211 1 24568888 4555
Q ss_pred hHHhh
Q psy16564 138 FLIIC 142 (157)
Q Consensus 138 ~~~~~ 142 (157)
.+.+.
T Consensus 104 ~~~vd 108 (117)
T 1q7s_A 104 ADLID 108 (117)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55443
No 197
>3kcq_A Phosphoribosylglycinamide formyltransferase; structural genomics, niaid, seattle structural center for infectious disease, ssgcid; 2.20A {Anaplasma phagocytophilum} SCOP: c.65.1.0
Probab=22.70 E-value=1.2e+02 Score=23.57 Aligned_cols=49 Identities=20% Similarity=0.189 Sum_probs=29.0
Q ss_pred HHHHHhcCC--eeEEEEcCCCCchhhHHHHHHHHHhCCCCEEEeCC----HHHHHHHhC
Q psy16564 59 AAKALDRRE--AQLCVLADNCDEPAYKKLVQALCSEHQIPLIKVDN----NKKLGEWAG 111 (157)
Q Consensus 59 v~KaL~kgk--akLVIlA~D~s~~~~~~~l~~lc~~~~Ipvi~v~s----k~eLG~a~G 111 (157)
.+++++.+. +..+.+-+|-+. .. ...+|+++|||++.+.. ..++-+.+-
T Consensus 25 ll~~~~~~~~~~~I~~Vis~~~~-a~---~l~~A~~~gIp~~~~~~~~~~~~~~~~~L~ 79 (215)
T 3kcq_A 25 LAKAFSTEESSVVISCVISNNAE-AR---GLLIAQSYGIPTFVVKRKPLDIEHISTVLR 79 (215)
T ss_dssp HHHHTCCC-CSEEEEEEEESCTT-CT---HHHHHHHTTCCEEECCBTTBCHHHHHHHHH
T ss_pred HHHHHHcCCCCcEEEEEEeCCcc-hH---HHHHHHHcCCCEEEeCcccCChHHHHHHHH
Confidence 445555553 566666666433 12 24689999999998753 245555443
No 198
>2qvg_A Two component response regulator; NYSGXRC, PSI-2, structural genomics, protein structure initiative; 1.50A {Legionella pneumophila subsp}
Probab=22.70 E-value=1.4e+02 Score=19.51 Aligned_cols=73 Identities=15% Similarity=0.163 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHHhcCC-----ceeeHHHHHHHHhc------CCeeEEEEcCCCCchhhHHHHHHHHHh---CCCCEEEe
Q psy16564 35 INKALQQVLKTARAHDG-----LAKGLHEAAKALDR------REAQLCVLADNCDEPAYKKLVQALCSE---HQIPLIKV 100 (157)
Q Consensus 35 ~~k~L~~lL~~A~~agk-----lv~G~~~v~KaL~k------gkakLVIlA~D~s~~~~~~~l~~lc~~---~~Ipvi~v 100 (157)
....+..+|... |. ......+++..++. ....+||+--+.+..+-...+..+.+. .++|++.+
T Consensus 19 ~~~~l~~~L~~~---g~~~~v~~~~~~~~a~~~l~~~~~~~~~~~dlii~D~~l~~~~g~~~~~~l~~~~~~~~~~ii~l 95 (143)
T 2qvg_A 19 DIQSVERVFHKI---SSLIKIEIAKSGNQALDMLYGRNKENKIHPKLILLDINIPKMNGIEFLKELRDDSSFTDIEVFVL 95 (143)
T ss_dssp HHHHHHHHHHHH---CTTCCEEEESSHHHHHHHHHTCTTCCCCCCSEEEEETTCTTSCHHHHHHHHTTSGGGTTCEEEEE
T ss_pred HHHHHHHHHHHh---CCCceEEEECCHHHHHHHHHhcccccCCCCCEEEEecCCCCCCHHHHHHHHHcCccccCCcEEEE
Confidence 444555555543 32 23455778888876 678899887766543333444444433 57898887
Q ss_pred C---CHHHHHHHh
Q psy16564 101 D---NNKKLGEWA 110 (157)
Q Consensus 101 ~---sk~eLG~a~ 110 (157)
. +....-+++
T Consensus 96 s~~~~~~~~~~~~ 108 (143)
T 2qvg_A 96 TAAYTSKDKLAFE 108 (143)
T ss_dssp ESCCCHHHHHHHT
T ss_pred eCCCCHHHHHHHH
Confidence 5 333444444
No 199
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=22.58 E-value=1.1e+02 Score=25.98 Aligned_cols=49 Identities=22% Similarity=0.323 Sum_probs=31.1
Q ss_pred HHHHHHHhcCCeeEEEEcCCCCchhhHHHHHHHHHhCCCCEEEeCCHHHHH
Q psy16564 57 HEAAKALDRREAQLCVLADNCDEPAYKKLVQALCSEHQIPLIKVDNNKKLG 107 (157)
Q Consensus 57 ~~v~KaL~kgkakLVIlA~D~s~~~~~~~l~~lc~~~~Ipvi~v~sk~eLG 107 (157)
..+...+..-.+-++++ |++.......+...+.+.++|++.+.+|.+|-
T Consensus 105 ~~~~~~l~~aD~vllVv--D~~~~~~~~~~l~~l~~~~~piIvV~NK~Dl~ 153 (423)
T 3qq5_A 105 EKARRVFYRADCGILVT--DSAPTPYEDDVVNLFKEMEIPFVVVVNKIDVL 153 (423)
T ss_dssp HHHHHHHTSCSEEEEEC--SSSCCHHHHHHHHHHHHTTCCEEEECCCCTTT
T ss_pred HHHHHHHhcCCEEEEEE--eCCChHHHHHHHHHHHhcCCCEEEEEeCcCCC
Confidence 33445555544444444 54443455666777788899999999887753
No 200
>3gbv_A Putative LACI-family transcriptional regulator; NYSGXRC, PSI-II, 11231J, structur genomics, protein structure initiative; 2.20A {Bacteroides fragilis}
Probab=22.34 E-value=1.6e+02 Score=21.92 Aligned_cols=42 Identities=19% Similarity=0.244 Sum_probs=23.7
Q ss_pred HHHHHhcCCeeEEEEcCCCCchhhHHHHHHHHHhCCCCEEEeCC
Q psy16564 59 AAKALDRREAQLCVLADNCDEPAYKKLVQALCSEHQIPLIKVDN 102 (157)
Q Consensus 59 v~KaL~kgkakLVIlA~D~s~~~~~~~l~~lc~~~~Ipvi~v~s 102 (157)
.++.+...++.-+|+..-..+ ..... ...+.+.+||++.+++
T Consensus 61 ~i~~l~~~~vdgiii~~~~~~-~~~~~-~~~~~~~~iPvV~~~~ 102 (304)
T 3gbv_A 61 TSQAVIEEQPDGVMFAPTVPQ-YTKGF-TDALNELGIPYIYIDS 102 (304)
T ss_dssp HHHHHHTTCCSEEEECCSSGG-GTHHH-HHHHHHHTCCEEEESS
T ss_pred HHHHHHhcCCCEEEECCCChH-HHHHH-HHHHHHCCCeEEEEeC
Confidence 345555566666655543222 23333 3445667999999873
No 201
>3t8y_A CHEB, chemotaxis response regulator protein-glutamate methylesterase; CHEA, hydrolase; 1.90A {Thermotoga maritima}
Probab=22.33 E-value=89 Score=21.55 Aligned_cols=50 Identities=12% Similarity=0.034 Sum_probs=37.1
Q ss_pred eeeHHHHHHHHhcCCeeEEEEcCCCCchhhHHHHHHHHHhCCCCEEEeCC
Q psy16564 53 AKGLHEAAKALDRREAQLCVLADNCDEPAYKKLVQALCSEHQIPLIKVDN 102 (157)
Q Consensus 53 v~G~~~v~KaL~kgkakLVIlA~D~s~~~~~~~l~~lc~~~~Ipvi~v~s 102 (157)
.....++++.+......+||+--+.+..+-...+..+.+...+|++.+.+
T Consensus 57 ~~~~~~al~~l~~~~~dlvilD~~l~~~~g~~l~~~lr~~~~~~ii~~s~ 106 (164)
T 3t8y_A 57 AKDGLEAVEKAIELKPDVITMDIEMPNLNGIEALKLIMKKAPTRVIMVSS 106 (164)
T ss_dssp ESSHHHHHHHHHHHCCSEEEECSSCSSSCHHHHHHHHHHHSCCEEEEEES
T ss_pred cCCHHHHHHHhccCCCCEEEEeCCCCCCCHHHHHHHHHhcCCceEEEEec
Confidence 34667888888888899999987766545556666666777789888763
No 202
>3ceu_A Thiamine phosphate pyrophosphorylase; TIM barrel-like protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacteroides thetaiotaomicron vpi-5482}
Probab=22.21 E-value=70 Score=24.06 Aligned_cols=52 Identities=10% Similarity=0.063 Sum_probs=34.2
Q ss_pred HHHHhcCCeeEEEE-cCCCCchhhHHHHHHHHHhCCCCEEEeCCHHHHHHHhCCC
Q psy16564 60 AKALDRREAQLCVL-ADNCDEPAYKKLVQALCSEHQIPLIKVDNNKKLGEWAGLS 113 (157)
Q Consensus 60 ~KaL~kgkakLVIl-A~D~s~~~~~~~l~~lc~~~~Ipvi~v~sk~eLG~a~G~~ 113 (157)
..+++.| +.+|-+ ..+.++....+.+..+|..++++++. .+..++...+|-+
T Consensus 20 ~~a~~~G-v~~v~lr~k~~~~~~~~~~i~~l~~~~~~~liv-nd~~~~A~~~gad 72 (210)
T 3ceu_A 20 TALFEEG-LDILHLRKPETPAMYSERLLTLIPEKYHRRIVT-HEHFYLKEEFNLM 72 (210)
T ss_dssp HHHHHTT-CCEEEECCSSCCHHHHHHHHHHSCGGGGGGEEE-SSCTTHHHHTTCS
T ss_pred HHHHHCC-CCEEEEccCCCCHHHHHHHHHHHHHHhCCeEEE-eCCHHHHHHcCCC
Confidence 3344445 444433 44556656777788889889998865 5666888888765
No 203
>1gml_A T-complex protein 1 subunit gamma; chaperone, chaperonin, actin, tubulin; 2.2A {Mus musculus} SCOP: c.8.5.2 PDB: 1gn1_A
Probab=22.21 E-value=1.9e+02 Score=21.47 Aligned_cols=52 Identities=12% Similarity=0.243 Sum_probs=37.5
Q ss_pred HHHHHHHhcCCeeEEEEcCCCCchhhHHHHHHHHHhCCCCEEEeC---CHHHHHHHhCCC
Q psy16564 57 HEAAKALDRREAQLCVLADNCDEPAYKKLVQALCSEHQIPLIKVD---NNKKLGEWAGLS 113 (157)
Q Consensus 57 ~~v~KaL~kgkakLVIlA~D~s~~~~~~~l~~lc~~~~Ipvi~v~---sk~eLG~a~G~~ 113 (157)
++..+.|..-.+.+||.-..+++ ....+..++||.++.-- +.+.|.+++|-.
T Consensus 68 ~~~v~kI~~~g~nVVl~~k~I~d-----~a~~~l~k~gI~~vr~v~~~dleria~atGa~ 122 (178)
T 1gml_A 68 HQLCEDIIQLKPDVVITEKGISD-----LAQHYLMRANVTAIRRVRKTDNNRIARACGAR 122 (178)
T ss_dssp HHHHHHHHTTCCSEEEESSCBCH-----HHHHHHHHTTCEEECCCCHHHHHHHHHHHCCC
T ss_pred HHHHHHHhhcCCcEEEECCcccH-----HHHHHHHHCCCEEEecCCHHHHHHHHHHhCCe
Confidence 34566777777999998888887 34456788899988754 455667777753
No 204
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=22.19 E-value=83 Score=21.72 Aligned_cols=42 Identities=19% Similarity=0.075 Sum_probs=25.7
Q ss_pred CeeEEEEcCCCCchh-hHHHHHHHHHhCCCCEEEeCCHHHHHHH
Q psy16564 67 EAQLCVLADNCDEPA-YKKLVQALCSEHQIPLIKVDNNKKLGEW 109 (157)
Q Consensus 67 kakLVIlA~D~s~~~-~~~~l~~lc~~~~Ipvi~v~sk~eLG~a 109 (157)
.+.++++.-|+.... ....+..+ .+.++|++.+.+|.+|-..
T Consensus 81 ~~~~~i~v~D~~~~~~~~~~~~~~-~~~~~p~ilv~nK~Dl~~~ 123 (165)
T 2wji_A 81 KPDLVVNIVDATALERNLYLTLQL-MEMGANLLLALNKMDLAKS 123 (165)
T ss_dssp CCSEEEEEEETTCHHHHHHHHHHH-HHTTCCEEEEEECHHHHHH
T ss_pred CCCEEEEEecCCchhHhHHHHHHH-HhcCCCEEEEEEchHhccc
Confidence 355666666665422 22233333 4468999999999888544
No 205
>3ruv_A Chaperonin, CPN; double-ring, protein folding machinery, group II chaperonin, binding, chaperone; HET: ANP; 2.24A {Methanococcus maripaludis} PDB: 3rus_A* 3ruw_A* 3ruq_A* 3los_A 3kfb_A* 3izi_A 3izj_A 3izm_A 3izh_A 3kfe_A* 3iyf_A* 3kfk_A* 3izk_A 3izl_A 3j03_A 3izn_A 3j02_A
Probab=22.18 E-value=96 Score=27.32 Aligned_cols=51 Identities=14% Similarity=0.152 Sum_probs=33.1
Q ss_pred HHHHHHhcCCeeEEEEcCCCCchhhHHHHHHHHHhCCCCEEEeCCH---HHHHHHhCCC
Q psy16564 58 EAAKALDRREAQLCVLADNCDEPAYKKLVQALCSEHQIPLIKVDNN---KKLGEWAGLS 113 (157)
Q Consensus 58 ~v~KaL~kgkakLVIlA~D~s~~~~~~~l~~lc~~~~Ipvi~v~sk---~eLG~a~G~~ 113 (157)
..++.|.+-.+.+||++.|+++. - .+++.++||-++.--.+ ++|.+++|-.
T Consensus 271 ~~ve~I~~~g~~vvi~~~~I~~~-a----l~~L~~~gI~~v~~v~k~~le~ia~~tGa~ 324 (543)
T 3ruv_A 271 DMVAEIKASGANVLFCQKGIDDL-A----QHYLAKEGIVAARRVKKSDMEKLAKATGAN 324 (543)
T ss_dssp HHHHHHHHHTCSEEEESSCBCHH-H----HHHHHHTTCEEECSCCHHHHHHHHHHHCCC
T ss_pred HHHHHHHHcCCCEEEEeCCccHH-H----HHHHHHcCcEEEeeCCHHHHHHHHHHhCCc
Confidence 34445555558899999999982 2 33445788887764444 4666777743
No 206
>1ass_A Thermosome; chaperonin, HSP60, TCP1, groel, thermoplasma ACI ATP-binding; 2.30A {Thermoplasma acidophilum} SCOP: c.8.5.2 PDB: 1asx_A
Probab=22.17 E-value=1.6e+02 Score=21.44 Aligned_cols=52 Identities=13% Similarity=0.238 Sum_probs=37.8
Q ss_pred HHHHHHHhcCCeeEEEEcCCCCchhhHHHHHHHHHhCCCCEEEeC---CHHHHHHHhCCC
Q psy16564 57 HEAAKALDRREAQLCVLADNCDEPAYKKLVQALCSEHQIPLIKVD---NNKKLGEWAGLS 113 (157)
Q Consensus 57 ~~v~KaL~kgkakLVIlA~D~s~~~~~~~l~~lc~~~~Ipvi~v~---sk~eLG~a~G~~ 113 (157)
++..+.|..-.+.+||.-..+++ ....+..++||.++.-- +.+.|.+++|-.
T Consensus 62 ~~~v~kI~~~g~nVVl~~k~I~d-----~a~~~l~k~gI~~v~~v~~~dleria~atGa~ 116 (159)
T 1ass_A 62 KQMVEKIKKSGANVVLCQKGIDD-----VAQHYLAKEGIYAVRRVKKSDMEKLAKATGAK 116 (159)
T ss_dssp HHHHHHHHHTTCSEEEESSCBCH-----HHHHHHHHTTCEEECSCCHHHHHHHHHHHTCC
T ss_pred HHHhhhhhhCCCeEEEECCccCH-----HHHHHHHHCCCEEEccCCHHHHHHHHHHhCCe
Confidence 34556666667899998888887 34456788899998854 555677788854
No 207
>3ko1_A Chaperonin; 9-fold symmetry, double ring, ATP hydrolase, chaperone, NUCL binding; HET: ADP; 3.70A {Acidianus tengchongensis}
Probab=22.07 E-value=1e+02 Score=27.23 Aligned_cols=49 Identities=14% Similarity=0.180 Sum_probs=32.6
Q ss_pred HHHHHHHhcCCeeEEEEcCCCCchhhHHHHHHHHHhCCCCEEEeCCHHHHHHHh
Q psy16564 57 HEAAKALDRREAQLCVLADNCDEPAYKKLVQALCSEHQIPLIKVDNNKKLGEWA 110 (157)
Q Consensus 57 ~~v~KaL~kgkakLVIlA~D~s~~~~~~~l~~lc~~~~Ipvi~v~sk~eLG~a~ 110 (157)
...++.|.+-.+.+||++.|+++. - .+++.++||-++.--.+.+|-+++
T Consensus 284 ~~~vekI~~~g~~vvI~~~~I~~~-a----l~~L~~~gI~~v~~v~k~~leria 332 (553)
T 3ko1_A 284 KEKVDKILATGANVIICQKGIDEV-A----QSYLAKKGVLAVRRAKKSDLEKLA 332 (553)
T ss_dssp HHHHHHHHTTCCSEEECSSCBCSH-H----HHHHHHHTCEEECCCCHHHHHHHH
T ss_pred HHHHHHHHhhcceEEEeccChHHH-H----HHHHHhcchhhhhhhhhhhHHHHH
Confidence 445566666678999999999982 2 233457888887755665555444
No 208
>3piu_A 1-aminocyclopropane-1-carboxylate synthase; fruit ripening, ethylene biosynthesis, lyase, pyridoxal 5'-P binding; HET: LLP PLR; 1.35A {Malus domestica} SCOP: c.67.1.4 PDB: 1m4n_A* 1m7y_A* 1ynu_A* 1b8g_A*
Probab=22.04 E-value=1.5e+02 Score=23.85 Aligned_cols=35 Identities=11% Similarity=0.130 Sum_probs=23.7
Q ss_pred CeeEEEEcC------CCCchhhHHHHHHHHHhCCCCEEEeC
Q psy16564 67 EAQLCVLAD------NCDEPAYKKLVQALCSEHQIPLIKVD 101 (157)
Q Consensus 67 kakLVIlA~------D~s~~~~~~~l~~lc~~~~Ipvi~v~ 101 (157)
+.++|++.. -+-+..-...|.++|+++++.++.=+
T Consensus 191 ~~~~v~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De 231 (435)
T 3piu_A 191 RVKGVLVTNPSNPLGTTMTRNELYLLLSFVEDKGIHLISDE 231 (435)
T ss_dssp CEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEC
T ss_pred CeEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEec
Confidence 677887763 22222445678889999999888643
No 209
>3k4h_A Putative transcriptional regulator; structural genomics, protein structure INI NEW YORK structural genomix research consortium; HET: MAL; 2.80A {Bacillus cytotoxicus nvh 391-98}
Probab=21.98 E-value=2e+02 Score=21.38 Aligned_cols=59 Identities=10% Similarity=0.128 Sum_probs=33.0
Q ss_pred HHHHHHHHHHhcCCce-e--------eHHHHHHHHhcCCeeEEEEcC-CCCchhhHHHHHHHHHhCCCCEEEeC
Q psy16564 38 ALQQVLKTARAHDGLA-K--------GLHEAAKALDRREAQLCVLAD-NCDEPAYKKLVQALCSEHQIPLIKVD 101 (157)
Q Consensus 38 ~L~~lL~~A~~agklv-~--------G~~~v~KaL~kgkakLVIlA~-D~s~~~~~~~l~~lc~~~~Ipvi~v~ 101 (157)
.+..+-..|.+.|.-+ . ...+.++.+...++.-+|+.. +.++ .....+.+.+||++.++
T Consensus 31 ~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~vdgiIi~~~~~~~-----~~~~~l~~~~iPvV~~~ 99 (292)
T 3k4h_A 31 VIRGISSFAHVEGYALYMSTGETEEEIFNGVVKMVQGRQIGGIILLYSREND-----RIIQYLHEQNFPFVLIG 99 (292)
T ss_dssp HHHHHHHHHHHTTCEEEECCCCSHHHHHHHHHHHHHTTCCCEEEESCCBTTC-----HHHHHHHHTTCCEEEES
T ss_pred HHHHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHcCCCCEEEEeCCCCCh-----HHHHHHHHCCCCEEEEC
Confidence 3444445566666421 1 123455666666766666654 3333 23345567899999886
No 210
>3qvl_A Putative hydantoin racemase; isomerase; HET: 5HY; 1.82A {Klebsiella pneumoniae subsp} PDB: 3qvk_A* 3qvj_A
Probab=21.94 E-value=78 Score=24.81 Aligned_cols=34 Identities=24% Similarity=0.104 Sum_probs=24.8
Q ss_pred HHhcCCeeEEEEcCCCCchhhHHHHHHHHHhCCCCEEEe
Q psy16564 62 ALDRREAQLCVLADNCDEPAYKKLVQALCSEHQIPLIKV 100 (157)
Q Consensus 62 aL~kgkakLVIlA~D~s~~~~~~~l~~lc~~~~Ipvi~v 100 (157)
.+++..+..+++|.+.++ .+ ..+-+..+||++-+
T Consensus 64 ~l~~~g~d~iviaCnt~~-~l----~~lr~~~~iPvigi 97 (245)
T 3qvl_A 64 AGREQGVDGHVIASFGDP-GL----LAARELAQGPVIGI 97 (245)
T ss_dssp HHHHHTCSEEEEC-CCCT-TH----HHHHHHCSSCEEEH
T ss_pred HHHHCCCCEEEEeCCChh-HH----HHHHHHcCCCEECc
Confidence 445566999999999887 33 44556789999985
No 211
>3iyg_Q T-complex protein 1 subunit theta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus}
Probab=21.93 E-value=1.6e+02 Score=25.60 Aligned_cols=46 Identities=15% Similarity=0.265 Sum_probs=32.1
Q ss_pred HHhcCCeeEEEEcCCCCchhhHHHHHHHHHhCCCCEEEeCC---HHHHHHHhCC
Q psy16564 62 ALDRREAQLCVLADNCDEPAYKKLVQALCSEHQIPLIKVDN---NKKLGEWAGL 112 (157)
Q Consensus 62 aL~kgkakLVIlA~D~s~~~~~~~l~~lc~~~~Ipvi~v~s---k~eLG~a~G~ 112 (157)
.|.+-.+.+||++.+.++ + ...+..+++|-++.-.+ .++|.+++|-
T Consensus 266 ~I~~~g~~vvi~~~~I~~--l---a~~~l~k~~I~av~~~~~~dle~ia~~tGa 314 (512)
T 3iyg_Q 266 AIADTGANVVVTGGRVAD--M---ALHYANKYNIMLVRLNSKWDLRRLCKTVGA 314 (512)
T ss_pred HHHHhCCCEEEECCCccH--H---HHHHHHHCCeEEEEeCCHHHHHHHHHHhCC
Confidence 555566889999999987 2 23345678998888654 4556666764
No 212
>3tb6_A Arabinose metabolism transcriptional repressor; transcription regulation, arabinose binding, DNA binding Pro; HET: ARB; 2.21A {Bacillus subtilis}
Probab=21.82 E-value=1.7e+02 Score=21.68 Aligned_cols=45 Identities=7% Similarity=0.007 Sum_probs=23.3
Q ss_pred HHHHHHhcCCeeEEEE-cCCCCchhhHHHHHHHHHhCCCCEEEeCC
Q psy16564 58 EAAKALDRREAQLCVL-ADNCDEPAYKKLVQALCSEHQIPLIKVDN 102 (157)
Q Consensus 58 ~v~KaL~kgkakLVIl-A~D~s~~~~~~~l~~lc~~~~Ipvi~v~s 102 (157)
+.++.+...++.-+|+ ..|.+..+....+...+.+.+||++.+..
T Consensus 62 ~~~~~l~~~~vdgiIi~~~~~~~~~~~~~~~~~~~~~~iPvV~~~~ 107 (298)
T 3tb6_A 62 RGLENLLSQHIDGLIVEPTKSALQTPNIGYYLNLEKNGIPFAMINA 107 (298)
T ss_dssp HHHHHHHHTCCSEEEECCSSTTSCCTTHHHHHHHHHTTCCEEEESS
T ss_pred HHHHHHHHCCCCEEEEecccccccCCcHHHHHHHHhcCCCEEEEec
Confidence 3445555555555555 44432101111233455677999998873
No 213
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=21.70 E-value=92 Score=20.82 Aligned_cols=27 Identities=15% Similarity=0.038 Sum_probs=20.1
Q ss_pred hHHHHHHHHHhCCCCEEEeCCHHHHHH
Q psy16564 82 YKKLVQALCSEHQIPLIKVDNNKKLGE 108 (157)
Q Consensus 82 ~~~~l~~lc~~~~Ipvi~v~sk~eLG~ 108 (157)
....+..+..+.++|++.+.+|.+|-.
T Consensus 96 ~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 122 (161)
T 2dyk_A 96 ADYEVAEYLRRKGKPVILVATKVDDPK 122 (161)
T ss_dssp HHHHHHHHHHHHTCCEEEEEECCCSGG
T ss_pred hHHHHHHHHHhcCCCEEEEEECccccc
Confidence 445566677778999999998877654
No 214
>3lhk_A Putative DNA binding protein MJ0014; MCSG, PSI-2, structural genomics; 2.20A {Methanocaldococcus jannaschii}
Probab=21.52 E-value=73 Score=23.04 Aligned_cols=48 Identities=8% Similarity=0.124 Sum_probs=32.8
Q ss_pred eeHHHHHHHHhcCCeeEEEEcC-C-CCchhhHHHHHHHHHhCCCCEEEeCC
Q psy16564 54 KGLHEAAKALDRREAQLCVLAD-N-CDEPAYKKLVQALCSEHQIPLIKVDN 102 (157)
Q Consensus 54 ~G~~~v~KaL~kgkakLVIlA~-D-~s~~~~~~~l~~lc~~~~Ipvi~v~s 102 (157)
-|..+.+..++.|++..||+.. | .+- +....+..+|.++||.++.+..
T Consensus 53 p~l~~ll~~~~~g~id~vvv~~ldRL~R-~~~~~l~~~l~~~gv~~~~~~~ 102 (154)
T 3lhk_A 53 KNYKKLLKMVMNRKVEKVIIAYPDRLTR-FGFETLKEFFKSYGTEIVIINK 102 (154)
T ss_dssp HHHHHHHHHHHTTCEEEEEESSHHHHCS-SCHHHHHHHHHHTTCEEEESCS
T ss_pred HHHHHHHHHHHcCCCCEEEEEeCCcccc-cHHHHHHHHHHHCCCEEEEEeC
Confidence 4677888888899888777754 1 001 1233456788999999988764
No 215
>3gl9_A Response regulator; beta-sheet, surrounded by alpha helices, BOTH sides, signaling protein; HET: BFD; 1.80A {Thermotoga maritima} SCOP: c.23.1.0 PDB: 3dgf_C 3dge_C
Probab=21.48 E-value=1.5e+02 Score=18.96 Aligned_cols=64 Identities=20% Similarity=0.128 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHhcCCc---eeeHHHHHHHHhcCCeeEEEEcCCCCchhhHHHHHHHHHh---CCCCEEEeC
Q psy16564 35 INKALQQVLKTARAHDGL---AKGLHEAAKALDRREAQLCVLADNCDEPAYKKLVQALCSE---HQIPLIKVD 101 (157)
Q Consensus 35 ~~k~L~~lL~~A~~agkl---v~G~~~v~KaL~kgkakLVIlA~D~s~~~~~~~l~~lc~~---~~Ipvi~v~ 101 (157)
....+..+|.. .|.- .....++++.++.....+||+--+-+..+-...+..+-+. .++|++.+.
T Consensus 14 ~~~~l~~~l~~---~g~~v~~~~~~~~al~~l~~~~~dlvllD~~~p~~~g~~~~~~l~~~~~~~~~pii~~s 83 (122)
T 3gl9_A 14 LRKIVSFNLKK---EGYEVIEAENGQIALEKLSEFTPDLIVLXIMMPVMDGFTVLKKLQEKEEWKRIPVIVLT 83 (122)
T ss_dssp HHHHHHHHHHH---TTCEEEEESSHHHHHHHHTTBCCSEEEECSCCSSSCHHHHHHHHHTSTTTTTSCEEEEE
T ss_pred HHHHHHHHHHH---CCcEEEEeCCHHHHHHHHHhcCCCEEEEeccCCCCcHHHHHHHHHhcccccCCCEEEEe
Confidence 34455555543 3432 2345677888888889999987665543333444444322 479998876
No 216
>3l6u_A ABC-type sugar transport system periplasmic compo; structural genomics, nysgrc, target 11006S, PSI-2, protein S initiative; 1.90A {Exiguobacterium sibiricum}
Probab=21.36 E-value=2e+02 Score=21.41 Aligned_cols=41 Identities=10% Similarity=0.088 Sum_probs=22.9
Q ss_pred HHHHHHhcCCeeEEEE-cCCCCchhhHHHHHHHHHhCCCCEEEeC
Q psy16564 58 EAAKALDRREAQLCVL-ADNCDEPAYKKLVQALCSEHQIPLIKVD 101 (157)
Q Consensus 58 ~v~KaL~kgkakLVIl-A~D~s~~~~~~~l~~lc~~~~Ipvi~v~ 101 (157)
+.++.+...++.-+|+ ..+.+ .....+ ..+.+.+||++.++
T Consensus 55 ~~~~~l~~~~vdgiI~~~~~~~--~~~~~~-~~~~~~~iPvV~~~ 96 (293)
T 3l6u_A 55 EQILEFVHLKVDAIFITTLDDV--YIGSAI-EEAKKAGIPVFAID 96 (293)
T ss_dssp HHHHHHHHTTCSEEEEECSCTT--TTHHHH-HHHHHTTCCEEEES
T ss_pred HHHHHHHHcCCCEEEEecCChH--HHHHHH-HHHHHcCCCEEEec
Confidence 4445555555554544 44433 233333 45566799999986
No 217
>3lte_A Response regulator; structural genomics, PSI, protein structure initiative, NYSG YORK structural genomix research consortium, nysgxrc; 2.00A {Bermanella marisrubri}
Probab=21.30 E-value=1.4e+02 Score=19.15 Aligned_cols=64 Identities=19% Similarity=0.206 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHhcCC---ceeeHHHHHHHHhcCCeeEEEEcCCCCchhhHHHHHHHHHhC---CCCEEEeC
Q psy16564 35 INKALQQVLKTARAHDG---LAKGLHEAAKALDRREAQLCVLADNCDEPAYKKLVQALCSEH---QIPLIKVD 101 (157)
Q Consensus 35 ~~k~L~~lL~~A~~agk---lv~G~~~v~KaL~kgkakLVIlA~D~s~~~~~~~l~~lc~~~---~Ipvi~v~ 101 (157)
....+..+|.. .|. ......+.++.+......+||+--+.+..+-...+..+-+.. .+|++...
T Consensus 18 ~~~~l~~~L~~---~g~~v~~~~~~~~a~~~l~~~~~dlii~d~~l~~~~g~~~~~~l~~~~~~~~~~ii~~~ 87 (132)
T 3lte_A 18 MAAAIERVLKR---DHWQVEIAHNGFDAGIKLSTFEPAIMTLDLSMPKLDGLDVIRSLRQNKVANQPKILVVS 87 (132)
T ss_dssp HHHHHHHHHHH---TTCEEEEESSHHHHHHHHHHTCCSEEEEESCBTTBCHHHHHHHHHTTTCSSCCEEEEEC
T ss_pred HHHHHHHHHHH---CCcEEEEeCCHHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHhcCccCCCeEEEEe
Confidence 44555566653 343 334567788888888899999987765534444555554443 35555554
No 218
>1o69_A Aminotransferase; structural genomics, unknown function; HET: X04; 1.84A {Campylobacter jejuni} SCOP: c.67.1.4 PDB: 1o62_A 1o61_A*
Probab=21.25 E-value=90 Score=24.99 Aligned_cols=45 Identities=18% Similarity=0.228 Sum_probs=27.9
Q ss_pred HHHHHHHhcC--CeeEEEEcCCCCchhhHHHHHHHHHhCCCCEEEeC
Q psy16564 57 HEAAKALDRR--EAQLCVLADNCDEPAYKKLVQALCSEHQIPLIKVD 101 (157)
Q Consensus 57 ~~v~KaL~kg--kakLVIlA~D~s~~~~~~~l~~lc~~~~Ipvi~v~ 101 (157)
.+..++|... +.++|++..-.....-.+.|.++|++++++++.=+
T Consensus 110 ~~l~~~i~~~~~~~~~v~~~~~~G~~~~l~~i~~l~~~~~~~li~De 156 (394)
T 1o69_A 110 DLLKLAIKECEKKPKALILTHLYGNAAKMDEIVEICKENDIVLIEDA 156 (394)
T ss_dssp HHHHHHHHHCSSCCCEEEEECGGGCCCCHHHHHHHHHHTTCEEEEEC
T ss_pred HHHHHHHhcccCCceEEEEECCCCChhhHHHHHHHHHHcCCEEEEEC
Confidence 3444555442 56777776522222345678899999999887633
No 219
>1xvw_A Hypothetical protein RV2238C/MT2298; thioredoxin fold, oxidized cystein sulfenic acid, structural genomics, PSI; 1.90A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 1xxu_A
Probab=21.19 E-value=46 Score=22.85 Aligned_cols=43 Identities=2% Similarity=0.028 Sum_probs=29.3
Q ss_pred CCeeEEEEcCCCCchhhHHHHHHHHHhCCCCEEEeCC---HHHHHHHhCCC
Q psy16564 66 REAQLCVLADNCDEPAYKKLVQALCSEHQIPLIKVDN---NKKLGEWAGLS 113 (157)
Q Consensus 66 gkakLVIlA~D~s~~~~~~~l~~lc~~~~Ipvi~v~s---k~eLG~a~G~~ 113 (157)
..+.+|.|..|..+ .+..+++++++++-.+.+ ..++.+..|..
T Consensus 69 ~~~~vv~is~d~~~-----~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~v~ 114 (160)
T 1xvw_A 69 DDSAALAISVGPPP-----THKIWATQSGFTFPLLSDFWPHGAVSQAYGVF 114 (160)
T ss_dssp SSEEEEEEESCCHH-----HHHHHHHHHTCCSCEEECTTTTTHHHHHTTCE
T ss_pred CCcEEEEEeCCCHH-----HHHHHHHhcCCCceEEecCCcChHHHHHcCCc
Confidence 35788888877432 455667777776655544 67899999864
No 220
>1k66_A Phytochrome response regulator RCPB; CHEY homologue, homodimer, APO-protein, (beta/alpha)5, signaling protein; 1.75A {Tolypothrix SP} SCOP: c.23.1.1
Probab=21.17 E-value=1.4e+02 Score=19.46 Aligned_cols=64 Identities=14% Similarity=0.152 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHhcCC-----ceeeHHHHHHHHhc----------CCeeEEEEcCCCCchhhHHHHHHHHHh---CCCC
Q psy16564 35 INKALQQVLKTARAHDG-----LAKGLHEAAKALDR----------REAQLCVLADNCDEPAYKKLVQALCSE---HQIP 96 (157)
Q Consensus 35 ~~k~L~~lL~~A~~agk-----lv~G~~~v~KaL~k----------gkakLVIlA~D~s~~~~~~~l~~lc~~---~~Ip 96 (157)
....+..+|.. .|. ......++++.+.. ....+||+--+.+..+-...+..+.+. .++|
T Consensus 18 ~~~~l~~~L~~---~g~~~~v~~~~~~~~al~~l~~~~~~~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~~ 94 (149)
T 1k66_A 18 DFSTFQRLLQR---EGVVNPIYRCITGDQALDFLYQTGSYCNPDIAPRPAVILLDLNLPGTDGREVLQEIKQDEVLKKIP 94 (149)
T ss_dssp HHHHHHHHHHH---TTBCSCEEEECSHHHHHHHHHTCCSSSCGGGCCCCSEEEECSCCSSSCHHHHHHHHTTSTTGGGSC
T ss_pred HHHHHHHHHHH---cCCCceEEEECCHHHHHHHHHhcccccCcccCCCCcEEEEECCCCCCCHHHHHHHHHhCcccCCCe
Confidence 44455555554 343 23356778888886 678899887766543333444444443 5789
Q ss_pred EEEeC
Q psy16564 97 LIKVD 101 (157)
Q Consensus 97 vi~v~ 101 (157)
++.+.
T Consensus 95 ii~~t 99 (149)
T 1k66_A 95 VVIMT 99 (149)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 98875
No 221
>1srv_A Protein (groel (HSP60 class)); chaperone, cell division, ATP-binding, phosphorylation; 1.70A {Thermus thermophilus} SCOP: c.8.5.1
Probab=21.10 E-value=1.5e+02 Score=22.08 Aligned_cols=47 Identities=17% Similarity=0.217 Sum_probs=28.7
Q ss_pred hcCCeeEEEEcCCCCchhhHHHHHHHHHhCCCCEEEeCC----------HHHHHHHhCC
Q psy16564 64 DRREAQLCVLADNCDEPAYKKLVQALCSEHQIPLIKVDN----------NKKLGEWAGL 112 (157)
Q Consensus 64 ~kgkakLVIlA~D~s~~~~~~~l~~lc~~~~Ipvi~v~s----------k~eLG~a~G~ 112 (157)
+.| -.|+|||+|.+.+.+...+... -+..++++-|.- -+++.-++|-
T Consensus 51 ~~~-~pLlIIAedvegeaLatLvvNk-lrg~l~v~AVKAPgfGd~Rk~~L~DiAilTGg 107 (145)
T 1srv_A 51 QTG-KPLLIIAEDVEGEALATLVVNK-LRGTLSVAAVKAPGFGDRRKEMLKDIAAVTGG 107 (145)
T ss_dssp TTT-CCEEEEESEECHHHHHHHHHHH-HTTSCCEEEEECCSSHHHHHHHHHHHHHHHTC
T ss_pred HHC-CCEEEEecccchhhhhhhhhhh-hcccceEEEEeCCCcchhhHHHHHHHHHHhCC
Confidence 345 4799999999996555544332 334566665542 2366666764
No 222
>8abp_A L-arabinose-binding protein; binding proteins; HET: GLA GAL; 1.49A {Escherichia coli} SCOP: c.93.1.1 PDB: 7abp_A* 6abp_A* 1abe_A* 1abf_A* 5abp_A* 1bap_A* 1apb_A* 9abp_A* 2wrz_A
Probab=21.05 E-value=1.8e+02 Score=21.75 Aligned_cols=39 Identities=18% Similarity=0.143 Sum_probs=21.3
Q ss_pred HHHHhcCCeeEEEE-cCCCCchhhHHHHHHHHHhCCCCEEEeC
Q psy16564 60 AKALDRREAQLCVL-ADNCDEPAYKKLVQALCSEHQIPLIKVD 101 (157)
Q Consensus 60 ~KaL~kgkakLVIl-A~D~s~~~~~~~l~~lc~~~~Ipvi~v~ 101 (157)
++.+...++.-+|+ +.|.+ ... .....+.+.+||++.+.
T Consensus 50 i~~l~~~~vdgiii~~~~~~--~~~-~~~~~~~~~~iPvV~~~ 89 (306)
T 8abp_A 50 IDSLAASGAKGFVICTPDPK--LGS-AIVAKARGYDMKVIAVD 89 (306)
T ss_dssp HHHHHHTTCCEEEEECSCGG--GHH-HHHHHHHHTTCEEEEES
T ss_pred HHHHHHcCCCEEEEeCCCch--hhH-HHHHHHHHCCCcEEEeC
Confidence 33343344544444 44432 233 33345677899999887
No 223
>1gd9_A Aspartate aminotransferase; pyridoxal enzyme, temperature dependence O substrate recognition; HET: PLP; 1.80A {Pyrococcus horikoshii} SCOP: c.67.1.1 PDB: 1gde_A* 1dju_A*
Probab=20.94 E-value=1.6e+02 Score=23.02 Aligned_cols=44 Identities=11% Similarity=0.151 Sum_probs=27.7
Q ss_pred HHHHHHHhcCCeeEEEEcC------CCCchhhHHHHHHHHHhCCCCEEEeC
Q psy16564 57 HEAAKALDRREAQLCVLAD------NCDEPAYKKLVQALCSEHQIPLIKVD 101 (157)
Q Consensus 57 ~~v~KaL~kgkakLVIlA~------D~s~~~~~~~l~~lc~~~~Ipvi~v~ 101 (157)
.+..++|.. +.++|++.. -+-+......|.++|+++++.++.=+
T Consensus 151 ~~l~~~l~~-~~~~v~~~~~~nptG~~~~~~~l~~l~~~~~~~~~~li~De 200 (389)
T 1gd9_A 151 DELKKYVTD-KTRALIINSPCNPTGAVLTKKDLEEIADFVVEHDLIVISDE 200 (389)
T ss_dssp HHHHHHCCT-TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEC
T ss_pred HHHHHhcCc-CceEEEEECCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeh
Confidence 344445543 577887743 12222356778899999999888644
No 224
>3dxv_A Alpha-amino-epsilon-caprolactam racemase; fold-TYPE1, pyridoxal-5'-phosphate dependent racemase, pyrid phosphate, isomerase; HET: PLP; 2.21A {Achromobacter obae} PDB: 2zuk_A* 3dxw_A*
Probab=20.85 E-value=2.1e+02 Score=23.05 Aligned_cols=45 Identities=9% Similarity=0.138 Sum_probs=29.2
Q ss_pred HHHHHHHh---cCCeeEEEEcCCC-------CchhhHHHHHHHHHhCCCCEEEeC
Q psy16564 57 HEAAKALD---RREAQLCVLADNC-------DEPAYKKLVQALCSEHQIPLIKVD 101 (157)
Q Consensus 57 ~~v~KaL~---kgkakLVIlA~D~-------s~~~~~~~l~~lc~~~~Ipvi~v~ 101 (157)
....++|+ ..+..+|++-..- ++....+.|.++|++++++++.=+
T Consensus 188 ~~le~~l~~~~~~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DE 242 (439)
T 3dxv_A 188 TLLTEKLAAVPAGSIGAAFIEPIQSDGGLIVPPDGFLRKFADICRAHGILVVCDE 242 (439)
T ss_dssp HHHHHHHHTSCTTCEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEEC
T ss_pred HHHHHHHHhcCCCCEEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEec
Confidence 33444553 4556777765532 232447889999999999988755
No 225
>1mb3_A Cell division response regulator DIVK; signal transduction protein, structural proteomics in europe, spine, structural genomics; 1.41A {Caulobacter vibrioides} SCOP: c.23.1.1 PDB: 1m5u_A 1mav_A 1mb0_A 1m5t_A
Probab=20.84 E-value=1.6e+02 Score=18.49 Aligned_cols=66 Identities=14% Similarity=0.109 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHhcCCce---eeHHHHHHHHhcCCeeEEEEcCCCCchhhHHHHHHHHHh---CCCCEEEeCCH
Q psy16564 35 INKALQQVLKTARAHDGLA---KGLHEAAKALDRREAQLCVLADNCDEPAYKKLVQALCSE---HQIPLIKVDNN 103 (157)
Q Consensus 35 ~~k~L~~lL~~A~~agklv---~G~~~v~KaL~kgkakLVIlA~D~s~~~~~~~l~~lc~~---~~Ipvi~v~sk 103 (157)
....+..+|.. .|.-+ ....+.+..+......+||+--+-+..+-...+..+-+. .++|++.+.+.
T Consensus 13 ~~~~l~~~L~~---~~~~v~~~~~~~~a~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~~ii~~s~~ 84 (124)
T 1mb3_A 13 NMKLFHDLLEA---QGYETLQTREGLSALSIARENKPDLILMDIQLPEISGLEVTKWLKEDDDLAHIPVVAVTAF 84 (124)
T ss_dssp HHHHHHHHHHH---TTCEEEEESCHHHHHHHHHHHCCSEEEEESBCSSSBHHHHHHHHHHSTTTTTSCEEEEC--
T ss_pred HHHHHHHHHHH---cCcEEEEeCCHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHcCccccCCcEEEEECC
Confidence 44555555653 24322 234667777777788999987765543333444444442 47899988643
No 226
>2qzj_A Two-component response regulator; 11017X, PSI-II, structural genomics; 2.89A {Clostridium difficile}
Probab=20.83 E-value=84 Score=20.78 Aligned_cols=56 Identities=11% Similarity=0.060 Sum_probs=35.0
Q ss_pred eHHHHHHHHhcCCeeEEEEcCCCCchhhHHHHHHHHHhCCCCEEEeC---CHHHHHHHh
Q psy16564 55 GLHEAAKALDRREAQLCVLADNCDEPAYKKLVQALCSEHQIPLIKVD---NNKKLGEWA 110 (157)
Q Consensus 55 G~~~v~KaL~kgkakLVIlA~D~s~~~~~~~l~~lc~~~~Ipvi~v~---sk~eLG~a~ 110 (157)
...+.++.+......+||+--+-+..+-...+..+.+...+|++.+. +....-+++
T Consensus 36 ~~~~al~~~~~~~~dlvllD~~l~~~~g~~l~~~l~~~~~~~ii~ls~~~~~~~~~~~~ 94 (136)
T 2qzj_A 36 NCEEAIGKIFSNKYDLIFLEIILSDGDGWTLCKKIRNVTTCPIVYMTYINEDQSILNAL 94 (136)
T ss_dssp SHHHHHHHHHHCCCSEEEEESEETTEEHHHHHHHHHTTCCCCEEEEESCCCHHHHHHHH
T ss_pred CHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHccCCCCCEEEEEcCCCHHHHHHHH
Confidence 45677788888888899886654432334445555444589998875 333444444
No 227
>1k68_A Phytochrome response regulator RCPA; phosphorylated aspartate, CHEY homologue, homodimer, (beta/alpha)5, signaling protein; HET: PHD; 1.90A {Tolypothrix SP} SCOP: c.23.1.1
Probab=20.82 E-value=1.3e+02 Score=19.32 Aligned_cols=48 Identities=19% Similarity=0.278 Sum_probs=32.2
Q ss_pred eeHHHHHHHHhc-------CCeeEEEEcCCCCchhhHHHHHHHHHh---CCCCEEEeC
Q psy16564 54 KGLHEAAKALDR-------REAQLCVLADNCDEPAYKKLVQALCSE---HQIPLIKVD 101 (157)
Q Consensus 54 ~G~~~v~KaL~k-------gkakLVIlA~D~s~~~~~~~l~~lc~~---~~Ipvi~v~ 101 (157)
....+.++.+.. ....+||+--+.+..+-...+..+-+. .++|++.+.
T Consensus 35 ~~~~~a~~~l~~~~~~~~~~~~dlvi~d~~~~~~~g~~~~~~l~~~~~~~~~pii~ls 92 (140)
T 1k68_A 35 RDGMEAMAYLRQEGEYANASRPDLILLXLNLPKKDGREVLAEIKSDPTLKRIPVVVLS 92 (140)
T ss_dssp CSHHHHHHHHTTCGGGGSCCCCSEEEECSSCSSSCHHHHHHHHHHSTTGGGSCEEEEE
T ss_pred CCHHHHHHHHHcccccccCCCCcEEEEecCCCcccHHHHHHHHHcCcccccccEEEEe
Confidence 345777888877 678899987766543344445555444 579999875
No 228
>3hv2_A Response regulator/HD domain protein; PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.50A {Pseudomonas fluorescens pf-5}
Probab=20.79 E-value=1e+02 Score=20.66 Aligned_cols=50 Identities=18% Similarity=0.197 Sum_probs=35.0
Q ss_pred eeeHHHHHHHHhcCCeeEEEEcCCCCchhhHHHHHHHHHh-CCCCEEEeCC
Q psy16564 53 AKGLHEAAKALDRREAQLCVLADNCDEPAYKKLVQALCSE-HQIPLIKVDN 102 (157)
Q Consensus 53 v~G~~~v~KaL~kgkakLVIlA~D~s~~~~~~~l~~lc~~-~~Ipvi~v~s 102 (157)
.....+++..+......+||+--+.+..+-...+..+.+. .++|++.+.+
T Consensus 44 ~~~~~~a~~~l~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s~ 94 (153)
T 3hv2_A 44 ARDATQALQLLASREVDLVISAAHLPQMDGPTLLARIHQQYPSTTRILLTG 94 (153)
T ss_dssp ESSHHHHHHHHHHSCCSEEEEESCCSSSCHHHHHHHHHHHCTTSEEEEECC
T ss_pred ECCHHHHHHHHHcCCCCEEEEeCCCCcCcHHHHHHHHHhHCCCCeEEEEEC
Confidence 3356788888888899999998776654444445444443 5789988774
No 229
>1mvo_A PHOP response regulator; phosphate regulon, transcriptional regulatory protein, alpha/beta doubly wound fold, phosphorylation; 1.60A {Bacillus subtilis} SCOP: c.23.1.1
Probab=20.79 E-value=1.6e+02 Score=18.93 Aligned_cols=64 Identities=20% Similarity=0.135 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHhcCCc---eeeHHHHHHHHhcCCeeEEEEcCCCCchhhHHHHHHHHHh-CCCCEEEeC
Q psy16564 35 INKALQQVLKTARAHDGL---AKGLHEAAKALDRREAQLCVLADNCDEPAYKKLVQALCSE-HQIPLIKVD 101 (157)
Q Consensus 35 ~~k~L~~lL~~A~~agkl---v~G~~~v~KaL~kgkakLVIlA~D~s~~~~~~~l~~lc~~-~~Ipvi~v~ 101 (157)
....+..+|.. .|.- .....+.+..+......+||+--+-+..+-...+..+.+. ..+|++.+.
T Consensus 15 ~~~~l~~~L~~---~g~~v~~~~~~~~a~~~~~~~~~dlvl~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s 82 (136)
T 1mvo_A 15 IVTLLQYNLER---SGYDVITASDGEEALKKAETEKPDLIVLDVMLPKLDGIEVCKQLRQQKLMFPILMLT 82 (136)
T ss_dssp HHHHHHHHHHH---TTCEEEEESSHHHHHHHHHHHCCSEEEEESSCSSSCHHHHHHHHHHTTCCCCEEEEE
T ss_pred HHHHHHHHHHH---CCcEEEEecCHHHHHHHHhhcCCCEEEEecCCCCCCHHHHHHHHHcCCCCCCEEEEE
Confidence 34455555543 2432 2335677777877788899887665543333444444444 578988875
No 230
>1kyq_A Met8P, siroheme biosynthesis protein Met8; homodimer, oxidoreductase, lyase; HET: NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.2.1.11 e.37.1.1
Probab=20.52 E-value=91 Score=25.15 Aligned_cols=36 Identities=14% Similarity=0.060 Sum_probs=28.6
Q ss_pred CeeEEEEcCCCCchhhHHHHHHHHHhC---CCCEEEeCCHH
Q psy16564 67 EAQLCVLADNCDEPAYKKLVQALCSEH---QIPLIKVDNNK 104 (157)
Q Consensus 67 kakLVIlA~D~s~~~~~~~l~~lc~~~---~Ipvi~v~sk~ 104 (157)
.+.+||.|.|.+ ..-..+-.+|+++ +|||..+++.+
T Consensus 106 ~adlViaat~d~--~~n~~I~~~Ar~~f~~~i~VNvvd~pe 144 (274)
T 1kyq_A 106 AWYIIMTCIPDH--PESARIYHLCKERFGKQQLVNVADKPD 144 (274)
T ss_dssp CEEEEEECCSCH--HHHHHHHHHHHHHHCTTSEEEETTCGG
T ss_pred CeEEEEEcCCCh--HHHHHHHHHHHHhcCCCcEEEECCCcc
Confidence 588999998854 4677788999998 99998777654
No 231
>2yvt_A Hypothetical protein AQ_1956; structural genomics, unknown function, NPPSFA, national PROJ protein structural and functional analyses; 1.60A {Aquifex aeolicus} SCOP: d.159.1.6
Probab=20.40 E-value=1.4e+02 Score=22.20 Aligned_cols=22 Identities=9% Similarity=0.209 Sum_probs=15.5
Q ss_pred HHHHHHhcCCeeEEEEcCCCCc
Q psy16564 58 EAAKALDRREAQLCVLADNCDE 79 (157)
Q Consensus 58 ~v~KaL~kgkakLVIlA~D~s~ 79 (157)
.+++.++..++-+||++.|...
T Consensus 23 ~~l~~~~~~~~D~vi~~GDl~~ 44 (260)
T 2yvt_A 23 KLKGVIAEKQPDILVVVGNILK 44 (260)
T ss_dssp HHHHHHHHHCCSEEEEESCCCC
T ss_pred HHHHHHHhcCCCEEEECCCCCC
Confidence 3444555557899999999754
No 232
>3kax_A Aminotransferase, classes I and II; PLP, C-S lyase, transf structural genomics, center for structural genomics of INFE diseases, csgid; HET: LLP MSE PLP; 1.70A {Bacillus anthracis str} PDB: 3t32_A*
Probab=20.33 E-value=1.6e+02 Score=22.86 Aligned_cols=45 Identities=11% Similarity=0.225 Sum_probs=28.1
Q ss_pred HHHHHHHHhcCCeeEEEEcCCC------CchhhHHHHHHHHHhCCCCEEEeC
Q psy16564 56 LHEAAKALDRREAQLCVLADNC------DEPAYKKLVQALCSEHQIPLIKVD 101 (157)
Q Consensus 56 ~~~v~KaL~kgkakLVIlA~D~------s~~~~~~~l~~lc~~~~Ipvi~v~ 101 (157)
..+..++| ..+.++|++..=- -+......+.++|++++++++.=+
T Consensus 146 ~~~l~~~l-~~~~~~v~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De 196 (383)
T 3kax_A 146 FEHLEKQF-QQGVKLMLLCSPHNPIGRVWKKEELTKLGSLCTKYNVIVVADE 196 (383)
T ss_dssp HHHHHHHH-TTTCCEEEEESSBTTTTBCCCHHHHHHHHHHHHHHTCEEEEEC
T ss_pred HHHHHHHh-CcCCeEEEEeCCCCCCCcCcCHHHHHHHHHHHHHCCCEEEEEc
Confidence 34555666 4567777775321 121345667778999999888644
No 233
>3av0_A DNA double-strand break repair protein MRE11; DNA repair, calcineurin-like phosphoesterase, ABC transporte domain-like; HET: DNA AGS; 3.10A {Methanocaldococcus jannaschii} PDB: 3auz_A*
Probab=20.28 E-value=1.3e+02 Score=24.55 Aligned_cols=47 Identities=13% Similarity=0.106 Sum_probs=27.7
Q ss_pred HHHHHHhcCCeeEEEEcCCCCchh---------hHHHHHHHHHhCCCCEEEeCCHHH
Q psy16564 58 EAAKALDRREAQLCVLADNCDEPA---------YKKLVQALCSEHQIPLIKVDNNKK 105 (157)
Q Consensus 58 ~v~KaL~kgkakLVIlA~D~s~~~---------~~~~l~~lc~~~~Ipvi~v~sk~e 105 (157)
++++.+...++-+||+|.|.-... ....+..+. ..++|++.+...-+
T Consensus 51 ~~v~~~~~~~~D~VliaGDl~d~~~p~~~~~~~~~~~l~~L~-~~~~pv~~v~GNHD 106 (386)
T 3av0_A 51 LCIKKILEIKPDVVLHSGDLFNDLRPPVKALRIAMQAFKKLH-ENNIKVYIVAGNHE 106 (386)
T ss_dssp HHHHHHHTTCCSEEEECSCSBSSSSCCHHHHHHHHHHHHHHH-HTTCEEEECCCGGG
T ss_pred HHHHHHHHcCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHH-hcCCcEEEEcCCCC
Confidence 344555567899999999953211 122222232 24899999874433
No 234
>3f7j_A YVGN protein; aldo-keto reductase, oxidoreductase; 1.70A {Bacillus subtilis} PDB: 3d3f_A*
Probab=20.26 E-value=1.3e+02 Score=23.65 Aligned_cols=66 Identities=14% Similarity=0.127 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHhcCCce------eeHHHHHHHHhcCCeeEEEEcCCCCchhhHHHHHHHHHhCCCCEEEeC
Q psy16564 35 INKALQQVLKTARAHDGLA------KGLHEAAKALDRREAQLCVLADNCDEPAYKKLVQALCSEHQIPLIKVD 101 (157)
Q Consensus 35 ~~k~L~~lL~~A~~agklv------~G~~~v~KaL~kgkakLVIlA~D~s~~~~~~~l~~lc~~~~Ipvi~v~ 101 (157)
+...+ ..|...+++|++. .+..+..++++......++.--..++-.....+..+|+++||.++-+.
T Consensus 119 ~~~~~-~~l~~l~~~Gkir~iGvSn~~~~~l~~~~~~~~~~~~~~Q~~~~~~~~~~~l~~~~~~~gi~v~a~s 190 (276)
T 3f7j_A 119 YKDTW-RALEKLYKDGKIRAIGVSNFQVHHLEELLKDAEIKPMVNQVEFHPRLTQKELRDYCKGQGIQLEAWS 190 (276)
T ss_dssp HHHHH-HHHHHHHHTTSEEEEEEESCCHHHHHHHHHHCSSCCSEEEEECBTTBCCHHHHHHHHHHTCEEEEES
T ss_pred HHHHH-HHHHHHHHcCCccEEEeccCCHHHHHHHHHhcCCCceeeeeeeccccCCHHHHHHHHHCCCEEEEec
Confidence 44455 5666667777754 245666666665544433332222222223467788999999988765
No 235
>1tjy_A Sugar transport protein; protein-ligand complex, signaling protein; HET: PAV; 1.30A {Salmonella typhimurium} SCOP: c.93.1.1 PDB: 1tm2_A 3t95_A* 3ejw_A*
Probab=20.24 E-value=1.6e+02 Score=22.64 Aligned_cols=39 Identities=8% Similarity=0.057 Sum_probs=21.4
Q ss_pred HHHHhcCCeeEEEE-cCCCCchhhHHHHHHHHHhCCCCEEEeC
Q psy16564 60 AKALDRREAQLCVL-ADNCDEPAYKKLVQALCSEHQIPLIKVD 101 (157)
Q Consensus 60 ~KaL~kgkakLVIl-A~D~s~~~~~~~l~~lc~~~~Ipvi~v~ 101 (157)
++.+...++..+|+ +.|.+. ... ....+.+.+||++.+.
T Consensus 53 i~~li~~~vdgiii~~~~~~~--~~~-~~~~a~~~gipvV~~d 92 (316)
T 1tjy_A 53 VNNFVNQGYDAIIVSAVSPDG--LCP-ALKRAMQRGVKILTWD 92 (316)
T ss_dssp HHHHHHTTCSEEEECCSSSST--THH-HHHHHHHTTCEEEEES
T ss_pred HHHHHHcCCCEEEEeCCCHHH--HHH-HHHHHHHCcCEEEEec
Confidence 34444445555555 445432 232 3345677899998775
No 236
>3dbi_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative, PSI-2; HET: MSE; 2.45A {Escherichia coli K12}
Probab=20.13 E-value=2.2e+02 Score=21.96 Aligned_cols=62 Identities=10% Similarity=0.095 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHhcCCcee---------eHHHHHHHHhcCCeeEEEEcC-CCCchhhHHHHHHHHHhCCCCEEEeC
Q psy16564 36 NKALQQVLKTARAHDGLAK---------GLHEAAKALDRREAQLCVLAD-NCDEPAYKKLVQALCSEHQIPLIKVD 101 (157)
Q Consensus 36 ~k~L~~lL~~A~~agklv~---------G~~~v~KaL~kgkakLVIlA~-D~s~~~~~~~l~~lc~~~~Ipvi~v~ 101 (157)
...+..+-..|.+.|.-+. ...+.++.+...++.-+|+.. +.+. ..+..++++.+||++.++
T Consensus 79 ~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~----~~~~~~~~~~~iPvV~~~ 150 (338)
T 3dbi_A 79 SELLFHAARMAEEKGRQLLLADGKHSAEEERQAIQYLLDLRCDAIMIYPRFLSV----DEIDDIIDAHSQPIMVLN 150 (338)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEECTTSHHHHHHHHHHHHHTTCSEEEECCSSSCH----HHHHHHHHHCSSCEEEES
T ss_pred HHHHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHhCCCCEEEEeCCCCCh----HHHHHHHHcCCCCEEEEc
Confidence 3344455566666675221 122345555556665555654 3332 245667788999999876
No 237
>2f9s_A Thiol-disulfide oxidoreductase RESA; thioredoxin-like protein; HET: MSE; 1.40A {Bacillus subtilis} SCOP: c.47.1.10 PDB: 1st9_A 1su9_A 2h1d_A 2h1b_A 2h1a_A 2h19_A 2h1g_A 3c71_A 3c73_A
Probab=20.07 E-value=2e+02 Score=19.11 Aligned_cols=49 Identities=8% Similarity=0.078 Sum_probs=31.0
Q ss_pred HHHhcCCeeEEEEcCCCCchhhHHHHHHHHHhCCCCEEEeC-CHHHHHHHhCCC
Q psy16564 61 KALDRREAQLCVLADNCDEPAYKKLVQALCSEHQIPLIKVD-NNKKLGEWAGLS 113 (157)
Q Consensus 61 KaL~kgkakLVIlA~D~s~~~~~~~l~~lc~~~~Ipvi~v~-sk~eLG~a~G~~ 113 (157)
+.+....+.++.+..|.++. .+..+.+++++++-.+. ...+|.+..|..
T Consensus 53 ~~~~~~~v~vv~v~~d~~~~----~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~ 102 (151)
T 2f9s_A 53 KHFKSQGVEIVAVNVGESKI----AVHNFMKSYGVNFPVVLDTDRQVLDAYDVS 102 (151)
T ss_dssp HHHGGGTEEEEEEEESCCHH----HHHHHHHHHTCCSCEEEETTSHHHHHTTCC
T ss_pred HHhccCCeEEEEEECCCCHH----HHHHHHHHcCCCceEEECCchHHHHhcCCC
Confidence 33444457888887776652 34556677676654433 456888988874
No 238
>3hzh_A Chemotaxis response regulator (CHEY-3); phosphatase, complex, response regulator, receiver domain, two-component signal transduction; HET: BFD; 1.96A {Borrelia burgdorferi}
Probab=20.05 E-value=1.6e+02 Score=19.90 Aligned_cols=65 Identities=12% Similarity=0.051 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHHhcCCc----eeeHHHHHHHHhcC--CeeEEEEcCCCCchhhHHHHHHHHHh-CCCCEEEeCC
Q psy16564 35 INKALQQVLKTARAHDGL----AKGLHEAAKALDRR--EAQLCVLADNCDEPAYKKLVQALCSE-HQIPLIKVDN 102 (157)
Q Consensus 35 ~~k~L~~lL~~A~~agkl----v~G~~~v~KaL~kg--kakLVIlA~D~s~~~~~~~l~~lc~~-~~Ipvi~v~s 102 (157)
....|..+|.. .|.- .....+++..+... ...+||+--+.+..+-...+..+-+. .++|++.+.+
T Consensus 48 ~~~~l~~~L~~---~g~~v~~~~~~~~~al~~l~~~~~~~dliilD~~l~~~~g~~~~~~lr~~~~~~~ii~ls~ 119 (157)
T 3hzh_A 48 TVKQLTQIFTS---EGFNIIDTAADGEEAVIKYKNHYPNIDIVTLXITMPKMDGITCLSNIMEFDKNARVIMISA 119 (157)
T ss_dssp HHHHHHHHHHH---TTCEEEEEESSHHHHHHHHHHHGGGCCEEEECSSCSSSCHHHHHHHHHHHCTTCCEEEEES
T ss_pred HHHHHHHHHHh---CCCeEEEEECCHHHHHHHHHhcCCCCCEEEEeccCCCccHHHHHHHHHhhCCCCcEEEEec
Confidence 44455555543 3443 34567888888877 78899987765543444444444333 5789988763
Done!