RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy16564
(157 letters)
>gnl|CDD|216387 pfam01248, Ribosomal_L7Ae, Ribosomal protein L7Ae/L30e/S12e/Gadd45
family. This family includes: Ribosomal L7A from
metazoa, Ribosomal L8-A and L8-B from fungi, 30S
ribosomal protein HS6 from archaebacteria, 40S ribosomal
protein S12 from eukaryotes, Ribosomal protein L30 from
eukaryotes and archaebacteria. Gadd45 and MyD118.
Length = 95
Score = 105 bits (265), Expect = 1e-30
Identities = 36/96 (37%), Positives = 53/96 (55%), Gaps = 1/96 (1%)
Query: 37 KALQQVLKTARAHDGLAKGLHEAAKALDRREAQLCVLADNCDEPAYKKLVQALCSEHQIP 96
AL++VLK A L GL E KAL R +A+L ++A++CD KL+ ALC E +P
Sbjct: 1 DALKEVLKKALKTGKLVLGLKEVTKALRRGKAKLVIIAEDCDPEEKVKLLPALCKEKNVP 60
Query: 97 LIKVDNNKKLGEWAGLSKLDNMGKARKVVGCSCVVI 132
+ V + K+LGE G + A K G S +++
Sbjct: 61 YVYVPSKKELGEACGKPRP-VSALAIKDNGDSKILV 95
>gnl|CDD|224277 COG1358, RPL8A, Ribosomal protein HS6-type (S12/L30/L7a)
[Translation, ribosomal structure and biogenesis].
Length = 116
Score = 76.2 bits (188), Expect = 9e-19
Identities = 28/100 (28%), Positives = 46/100 (46%), Gaps = 7/100 (7%)
Query: 34 DINKALQQVLKTARAHDGLAKGLHEAAKALDRREAQLCVLADNCDEPAYKKLVQALCSEH 93
+ + +L A L KG +E KA++R +A+L V+A++ K + ALC E
Sbjct: 10 MLEQKALSLLGKASRAGKLKKGTNEVTKAIERGKAKLVVIAEDVSPEELVKHLPALCEEK 69
Query: 94 QIPLIKVDNNKKLGEWAGLSKLDNMGKARKVVGCSCVVIK 133
+P + V + K+LG+ G + RKVV
Sbjct: 70 NVPYVYVGSKKELGKAVGK-------EVRKVVAIVDKGFA 102
>gnl|CDD|179766 PRK04175, rpl7ae, 50S ribosomal protein L7Ae; Validated.
Length = 122
Score = 47.6 bits (114), Expect = 1e-07
Identities = 31/97 (31%), Positives = 48/97 (49%), Gaps = 12/97 (12%)
Query: 36 NKALQQVLKTARAHDGLAKGLHEAAKALDRREAQLCVLADNCDEPAYKKLVQALCSEHQI 95
KAL+ ++ AR + KG +E KA++R A+L V+A++ D + LC E +I
Sbjct: 16 EKALE-AVEKARDTGKIKKGTNETTKAVERGIAKLVVIAEDVDPEEIVAHLPLLCEEKKI 74
Query: 96 PLIKVDNNKKLGEWAGLSKLDNMGKARKVVGCSCVVI 132
P + V + K LG+ AGL VG + I
Sbjct: 75 PYVYVPSKKDLGKAAGLE-----------VGAAAAAI 100
>gnl|CDD|188367 TIGR03677, rpl7ae, 50S ribosomal protein L7Ae. This model
specifically identifies the archaeal version of the
large ribosomal complex L7 protein. The family is a
narrower version of the pfam01248 model which also
recognizes the L30 protein. Multifunctional RNA-binding
protein that recognizes the K-turn motif in ribosomal
RNA, box H/ACA, box C/D and box C'/D' sRNAs. Interacts
with protein L15e.
Length = 117
Score = 45.5 bits (108), Expect = 5e-07
Identities = 32/97 (32%), Positives = 48/97 (49%), Gaps = 12/97 (12%)
Query: 36 NKALQQVLKTARAHDGLAKGLHEAAKALDRREAQLCVLADNCDEPAYKKLVQALCSEHQI 95
+KAL+ ++ AR + KG +E KA++R A+L V+A++ + P + ALC E I
Sbjct: 12 DKALE-AVEKARETGKIKKGTNEVTKAVERGIAKLVVIAEDVEPPEIVAHLPALCEEKGI 70
Query: 96 PLIKVDNNKKLGEWAGLSKLDNMGKARKVVGCSCVVI 132
P I V + LG AGL VG + I
Sbjct: 71 PYIYVKTKEDLGAAAGLE-----------VGAAAAAI 96
>gnl|CDD|184174 PRK13602, PRK13602, putative ribosomal protein L7Ae-like;
Provisional.
Length = 82
Score = 37.1 bits (86), Expect = 4e-04
Identities = 24/69 (34%), Positives = 40/69 (57%), Gaps = 2/69 (2%)
Query: 44 KTARAHDGLAKGLHEAAKALDRREAQLCVLADNCDEPAYKKLVQALCSEHQIPLIKVDNN 103
K ++A + G + KAL R + V+A++ D +K V+AL +E +P+ KVD+
Sbjct: 5 KVSQAKS-IVIGTKQTVKALKRGSVKEVVVAEDADPRLTEK-VEALANEKGVPVSKVDSM 62
Query: 104 KKLGEWAGL 112
KKLG+ G+
Sbjct: 63 KKLGKACGI 71
>gnl|CDD|140249 PTZ00222, PTZ00222, 60S ribosomal protein L7a; Provisional.
Length = 263
Score = 34.7 bits (79), Expect = 0.012
Identities = 18/67 (26%), Positives = 37/67 (55%)
Query: 45 TARAHDGLAKGLHEAAKALDRREAQLCVLADNCDEPAYKKLVQALCSEHQIPLIKVDNNK 104
+ +A + GL E +A+++++A++ V+A+N D + LC ++IP V +
Sbjct: 126 STKAPLAVVTGLQEVTRAIEKKQARMVVIANNVDPVELVLWMPNLCRANKIPYAIVKDMA 185
Query: 105 KLGEWAG 111
+LG+ G
Sbjct: 186 RLGDAIG 192
>gnl|CDD|222738 pfam14401, RLAN, RimK-like ATPgrasp N-terminal domain. An
uncharacterized alpha+beta fold domain that is mostly
fused to a RimK-like ATP-grasp and is found in bacteria
and euryarchaea. Members of this family are almost
always associated in gene neighborhoods with a GNAT-like
acetyltransferase fused to a papain-like petidase.
Additionally M20-like peptidases, GCS2, 4Fe-4S
Ferredoxins, a distinct metal-sulfur cluster protein and
ribosomal proteins are found in the gene neighborhoods.
Contextual analysis suggests a role for these in peptide
biosynthesis.
Length = 152
Score = 31.1 bits (71), Expect = 0.11
Identities = 16/95 (16%), Positives = 31/95 (32%), Gaps = 24/95 (25%)
Query: 30 EGVSDINKALQQVLKTARAHDGLAKGLHEAAKALDRREAQLCVLADNCDEPAYKKLVQAL 89
+ ++ L + L L +L + ++P ++L + L
Sbjct: 64 LALDELEPLLAKALAK----------LGSTD------RFRLTIYFGQTEDPRLERLARQL 107
Query: 90 CSEHQIPLIKVDNNKKLGEW-------AGLSKLDN 117
PL++V ++ G W LSKL
Sbjct: 108 FELFPCPLLEVTFERR-GGWQISSIKPLPLSKLSE 141
>gnl|CDD|224309 COG1391, GlnE, Glutamine synthetase adenylyltransferase
[Posttranslational modification, protein turnover,
chaperones / Signal transduction mechanisms].
Length = 963
Score = 31.9 bits (73), Expect = 0.12
Identities = 26/98 (26%), Positives = 36/98 (36%), Gaps = 9/98 (9%)
Query: 25 PSANDEGVSDINKALQQVLKTARAHDGLAKGLHEAAKALDRREA--QLCVLADNCDEPAY 82
A E + AL + L+ R L + A+ + E L +LA+ + A
Sbjct: 91 VEALAEVAPEDEAALMRRLRQFRRRVMLRIAWADLARTVTLEETTRPLSLLAEALIDAAR 150
Query: 83 KKLVQALCSEHQIPLIKVDNNKKLGEWAGLSKLDNMGK 120
L A C E P + GE GL L MGK
Sbjct: 151 DWLYAAACEEGGTPC------GEQGEPQGLLVL-GMGK 181
>gnl|CDD|198111 smart01043, BTAD, Bacterial transcriptional activator domain.
Found in the DNRI/REDD/AFSR family of regulators. This
region of AFSR along with the C terminal region is
capable of independently directing actinorhodin
production. This family contains TPR repeats.
Length = 145
Score = 30.3 bits (69), Expect = 0.24
Identities = 13/44 (29%), Positives = 19/44 (43%), Gaps = 4/44 (9%)
Query: 46 ARAHDGLAKGLHEAAKALDRREAQLCVLADNCDEPAYKKLVQAL 89
A A LA G HE A + + D E ++ L++AL
Sbjct: 66 ALAEALLALGRHEEA----LALLERLLALDPLRERLHRLLMRAL 105
>gnl|CDD|133057 cd06435, CESA_NdvC_like, NdvC_like proteins in this family are
putative bacterial beta-(1,6)-glucosyltransferase.
NdvC_like proteins in this family are putative
bacterial beta-(1,6)-glucosyltransferase.
Bradyrhizobium japonicum synthesizes periplasmic cyclic
beta-(1,3),beta-(1,6)-D-glucans during growth under
hypoosmotic conditions. Two genes (ndvB, ndvC) are
involved in the beta-(1, 3), beta-(1,6)-glucan
synthesis. The ndvC mutant strain resulted in synthesis
of altered cyclic beta-glucans composed almost entirely
of beta-(1, 3)-glycosyl linkages. The periplasmic
cyclic beta-(1,3),beta-(1,6)-D-glucans function for
osmoregulation. The ndvC mutation also affects the
ability of the bacteria to establish a successful
symbiotic interaction with host plant. Thus, the
beta-glucans may function as suppressors of a host
defense response.
Length = 236
Score = 30.1 bits (68), Expect = 0.37
Identities = 10/36 (27%), Positives = 20/36 (55%)
Query: 58 EAAKALDRREAQLCVLADNCDEPAYKKLVQALCSEH 93
++ ALD ++ V+ +N + A K V+A C++
Sbjct: 19 DSLAALDYPNFEVIVIDNNTKDEALWKPVEAHCAQL 54
>gnl|CDD|179205 PRK01018, PRK01018, 50S ribosomal protein L30e; Reviewed.
Length = 99
Score = 29.2 bits (66), Expect = 0.40
Identities = 12/44 (27%), Positives = 22/44 (50%), Gaps = 4/44 (9%)
Query: 34 DINKALQQVLKTARAHDGLAKGLHEAAKALDRREAQLCVLADNC 77
D N+ L+ + T + + G KA+ +A+L ++A NC
Sbjct: 3 DFNRELRVAVDTGK----VILGSKRTIKAIKLGKAKLVIVASNC 42
>gnl|CDD|220492 pfam09960, DUF2194, Uncharacterized protein conserved in bacteria
(DUF2194). This domain, found in various hypothetical
bacterial proteins, has no known function.
Length = 573
Score = 30.1 bits (68), Expect = 0.49
Identities = 13/54 (24%), Positives = 21/54 (38%), Gaps = 6/54 (11%)
Query: 2 GNEKTK---LKTTKIVVVQGTATDNVPSA---NDEGVSDINKALQQVLKTARAH 49
G +K K T V + + N+E DI ++Q+LK A+
Sbjct: 29 GWKKEKVFEYTPTSAAVPKNRDKYKLFHLFDENNENSLDIEHQIEQMLKYAKVG 82
>gnl|CDD|181493 PRK08593, PRK08593, 4-aminobutyrate aminotransferase; Provisional.
Length = 445
Score = 29.7 bits (67), Expect = 0.64
Identities = 12/41 (29%), Positives = 18/41 (43%), Gaps = 2/41 (4%)
Query: 80 PAYKKLVQALCSEHQIPLIKVDN-NKKLGEWAGLSKLDNMG 119
P Y + + C EH I L VD+ + LG S + +
Sbjct: 227 PGYFEALYKFCREHGI-LFAVDDIQQGLGRTGKWSSISHFN 266
>gnl|CDD|131487 TIGR02434, CobF, precorrin-6A synthase (deacetylating). In the
aerobic cobalamin biosythesis pathway, four enzymes are
involved in the conversion of precorrin-3A to
precorrin-6A. The first of the four steps is carried out
by EC 1.14.13.83, precorrin-3B synthase (CobG), yielding
precorrin-3B as the product. This is followed by three
methylation reactions, which introduce a methyl group at
C-17 (CobJ; EC 2.1.1.131), C-11 (CobM; EC 2.1.1.133) and
C-1 (CobF; EC 2.1.1.152) of the macrocycle, giving rise
to precorrin-4, precorrin-5 and precorrin-6A,
respectively. This model identifies CobF in High GC gram
positive, alphaproteobacteria and pseudomonas-related
species.
Length = 249
Score = 29.3 bits (66), Expect = 0.84
Identities = 8/12 (66%), Positives = 10/12 (83%)
Query: 86 VQALCSEHQIPL 97
VQAL + H+IPL
Sbjct: 145 VQALTARHRIPL 156
>gnl|CDD|226020 COG3489, COG3489, Predicted periplasmic lipoprotein [General
function prediction only].
Length = 359
Score = 29.1 bits (65), Expect = 1.1
Identities = 12/64 (18%), Positives = 24/64 (37%), Gaps = 6/64 (9%)
Query: 25 PSANDEGVSDINKALQQVLKTARAHDGLAKGLHEAAKALDRREAQLCVLADNCDEPAYKK 84
P+ + + +++A+ ++ L EA +AL + A C D A +
Sbjct: 21 PAPAVKAMEVMSQAVDGFIRPGYHD------LAEATEALQQSMAAYCQAPSQTDLAAARA 74
Query: 85 LVQA 88
A
Sbjct: 75 AFSA 78
>gnl|CDD|220175 pfam09316, Cmyb_C, C-myb, C-terminal. Members of this family are
predominantly found in the proto-oncogene c-myb and the
viral transforming protein myb. Truncation of the domain
results in 'activation' of c-myb and subsequent
tumourigenesis.
Length = 168
Score = 27.9 bits (62), Expect = 1.6
Identities = 13/47 (27%), Positives = 21/47 (44%), Gaps = 4/47 (8%)
Query: 65 RREAQLCVLADNCDEPAYKKLVQALCSEHQIPLIKVDNNKKLGEWAG 111
++E ++ EP KK+ Q E + P+ KV + L W G
Sbjct: 107 KQETGEDLIIVEEVEPPLKKIKQ----EVESPMKKVRKSLALDIWEG 149
>gnl|CDD|236218 PRK08284, PRK08284, precorrin 6A synthase; Provisional.
Length = 253
Score = 28.3 bits (64), Expect = 1.8
Identities = 8/12 (66%), Positives = 10/12 (83%)
Query: 86 VQALCSEHQIPL 97
VQAL + H+IPL
Sbjct: 146 VQALAARHRIPL 157
>gnl|CDD|224823 COG1911, RPL30, Ribosomal protein L30E [Translation, ribosomal
structure and biogenesis].
Length = 100
Score = 26.9 bits (60), Expect = 2.2
Identities = 13/52 (25%), Positives = 25/52 (48%), Gaps = 4/52 (7%)
Query: 34 DINKALQQVLKTARAHDGLAKGLHEAAKALDRREAQLCVLADNCDEPAYKKL 85
D+ K L+ +KT + G K+L +A+L ++A NC + + +
Sbjct: 6 DVEKELKLAVKTG----KVILGSKRTIKSLKLGKAKLIIIASNCPKELKEDI 53
>gnl|CDD|212502 cd11643, Precorrin-6A-synthase, Precorrin-6A synthase, the
cobalamin biosynthesis enzyme CobF. Precorrin-6A
synthase participates in the pathway toward the
biosynthesis of cobalamin (vitamin B12). There are two
distinct cobalamin biosynthetic pathways in bacteria.
The aerobic pathway requires oxygen, and cobalt is
inserted late in the pathway; the anaerobic pathway does
not require oxygen, and cobalt insertion is the first
committed step towards cobalamin synthesis. This model
represents CobF, the precorrin-6A synthase, an enzyme
specific to the aerobic pathway. After precorrin-4 is
methylated at C-11 by CobM to produce precorrin-5, CobF
catalyzes the removal of the extruded acyl group in the
subsequent step, and the addition of a methyl group at
C-1. The product of this reaction is precorrin-6A, which
gets reduced by an NADH-dependent reductase to yield
precorrin-6B. This family includes enzymes in GC-rich
Gram-positive bacteria, alpha proteobacteria and
Pseudomonas-related species.
Length = 247
Score = 27.6 bits (62), Expect = 2.4
Identities = 8/12 (66%), Positives = 10/12 (83%)
Query: 86 VQALCSEHQIPL 97
VQAL + H+IPL
Sbjct: 143 VQALAARHRIPL 154
>gnl|CDD|221355 pfam11981, DUF3482, Domain of unknown function (DUF3482). This
presumed domain is functionally uncharacterized. This
domain is found in bacteria and eukaryotes. This domain
is typically between 289 to 301 amino acids in length.
This domain is found associated with pfam01926. THe
central region of these proteins contains a hydrophobic
region that is similar to pfam05433.
Length = 293
Score = 27.6 bits (62), Expect = 2.5
Identities = 11/51 (21%), Positives = 17/51 (33%)
Query: 26 SANDEGVSDINKALQQVLKTARAHDGLAKGLHEAAKALDRREAQLCVLADN 76
S D + L + LK AR H + + R+ + LA
Sbjct: 242 SPQDAAWREERGKLPRELKKARNHPEWSSLNPGSDLLQAERQEIIDTLASA 292
>gnl|CDD|181189 PRK07986, PRK07986, adenosylmethionine--8-amino-7-oxononanoate
transaminase; Validated.
Length = 428
Score = 27.7 bits (62), Expect = 3.2
Identities = 8/19 (42%), Positives = 10/19 (52%)
Query: 80 PAYKKLVQALCSEHQIPLI 98
P + K V+ LC I LI
Sbjct: 225 PEWLKRVRKLCDREGILLI 243
>gnl|CDD|220883 pfam10824, DUF2580, Protein of unknown function (DUF2580). This
family of proteins with unknown function appears to be
mainly found in actinobacteria.
Length = 100
Score = 26.5 bits (59), Expect = 3.3
Identities = 7/26 (26%), Positives = 10/26 (38%)
Query: 44 KTARAHDGLAKGLHEAAKALDRREAQ 69
A LA+ L AA A + +
Sbjct: 68 ALATVSTDLAENLRAAAAAYEATDED 93
>gnl|CDD|234385 TIGR03897, lanti_2_LanM, type 2 lantibiotic biosynthesis protein
LanM. Members of this family are known generally as
LanM, a multifunctional enzyme of lantibiotic
biosynthesis. This catalysis by LanM distinguishes the
type 2 lantibiotics, such as mersacidin, cinnamycin, and
lichenicidin, from LanBC-produced type 1 lantibiotics
such as nisin and subtilin. The N-terminal domain
contains regions associated with Ser and Thr
dehydration. The C-terminal region contains a pfam05147
domain, which catalyzes the formation of the lanthionine
bridge [Cellular processes, Toxin production and
resistance].
Length = 931
Score = 27.6 bits (62), Expect = 3.6
Identities = 18/50 (36%), Positives = 22/50 (44%), Gaps = 8/50 (16%)
Query: 28 NDEGVSDINKALQQVLKTARAHD--------GLAKGLHEAAKALDRREAQ 69
+DE DI AL+ LK + G + L EAAK LD E Q
Sbjct: 832 DDEIDEDIEIALETTLKLGFGDNDSLCHGDLGNLEILLEAAKVLDDEELQ 881
>gnl|CDD|236517 PRK09440, avtA, valine--pyruvate transaminase; Provisional.
Length = 416
Score = 27.1 bits (61), Expect = 3.8
Identities = 14/31 (45%), Positives = 19/31 (61%), Gaps = 6/31 (19%)
Query: 72 VLADNCDEPAYKKLVQALCSEHQIPLIKVDN 102
VL D +E +KL AL +H IPL+ +DN
Sbjct: 195 VLTD--EE--LEKL-DALARQHNIPLL-IDN 219
>gnl|CDD|238829 cd01659, TRX_superfamily, Thioredoxin (TRX) superfamily; a large,
diverse group of proteins containing a TRX-fold. Many
members contain a classic TRX domain with a redox active
CXXC motif. They function as protein disulfide
oxidoreductases (PDOs), altering the redox state of
target proteins via the reversible oxidation of their
active site dithiol. The PDO members of this superfamily
include TRX, protein disulfide isomerase (PDI),
tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial
Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein
families. Members of the superfamily that do not
function as PDOs but contain a TRX-fold domain include
phosducins, peroxiredoxins and glutathione (GSH)
peroxidases, SCO proteins, GSH transferases (GST,
N-terminal domain), arsenic reductases, TRX-like
ferredoxins and calsequestrin, among others.
Length = 69
Score = 25.7 bits (56), Expect = 3.9
Identities = 7/56 (12%), Positives = 13/56 (23%)
Query: 49 HDGLAKGLHEAAKALDRREAQLCVLADNCDEPAYKKLVQALCSEHQIPLIKVDNNK 104
+ L L + A + DE + +P + V
Sbjct: 8 WCPFCQALRPVLAELALLNKGVKFEAVDVDEDPALEKELKRYGVGGVPTLVVFGPG 63
>gnl|CDD|236077 PRK07714, PRK07714, hypothetical protein; Provisional.
Length = 100
Score = 26.3 bits (58), Expect = 4.2
Identities = 13/47 (27%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Query: 61 KALDRREAQLCVLADNCDEPAYKKLVQALCSEHQIPLIKVDNNKKLG 107
K + +A+L +L+++ KK + C+ + +P+ KV+N ++LG
Sbjct: 28 KEVRSGKAKLVLLSEDASVNTTKK-ITDKCTYYNVPMRKVENRQQLG 73
>gnl|CDD|219580 pfam07793, DUF1631, Protein of unknown function (DUF1631). The
members of this family are sequences derived from a
group of hypothetical proteins expressed by certain
bacterial species. The region concerned is approximately
440 amino acid residues in length.
Length = 729
Score = 26.9 bits (60), Expect = 5.0
Identities = 20/86 (23%), Positives = 37/86 (43%), Gaps = 22/86 (25%)
Query: 25 PSANDEGVSDINKALQQVLKTARAHDGLAKGLHEAAKALDRREAQL---------CVLAD 75
+ + D+ + LQQ+L + DG +AL +++ + +L D
Sbjct: 312 LALGEPADFDLRELLQQLLSRLSSEDG-------KDRALGQQDEDVINLVGMLFDFILDD 364
Query: 76 -NCDEPAYKKLVQALCSEHQIPLIKV 100
N +P ++AL QIP++KV
Sbjct: 365 RNLPDP-----IKALIGRLQIPVLKV 385
>gnl|CDD|200086 TIGR01225, hutH, histidine ammonia-lyase. This enzyme deaminates
histidine to urocanic acid, the first step in histidine
degradation. It is closely related to phenylalanine
ammonia-lyase [Energy metabolism, Amino acids and
amines].
Length = 506
Score = 26.6 bits (59), Expect = 7.3
Identities = 19/54 (35%), Positives = 24/54 (44%), Gaps = 5/54 (9%)
Query: 20 ATDN--VPSANDEGVSDINKALQQVLKTARAHDGLAKGLHEAAKALDRREAQLC 71
ATDN V + E VS N + V A A D LA + E +RR +L
Sbjct: 307 ATDNPLVFADGGEVVSGGNFHGEPV---ALAADFLAIAIAELGSISERRIERLL 357
>gnl|CDD|237804 PRK14725, PRK14725, pyruvate kinase; Provisional.
Length = 608
Score = 26.5 bits (59), Expect = 7.4
Identities = 10/43 (23%), Positives = 14/43 (32%), Gaps = 1/43 (2%)
Query: 37 KALQQVLKTARAHDGLAKGLHEAAKALDRREAQLCVLADNCDE 79
AL VL RA G A+ E L ++ +
Sbjct: 89 AALDAVLAVLRALLGEGPAYPPEDTAVTFEEGDEL-LDEHAEA 130
>gnl|CDD|235147 PRK03643, PRK03643, altronate oxidoreductase; Provisional.
Length = 471
Score = 26.3 bits (59), Expect = 7.5
Identities = 11/27 (40%), Positives = 13/27 (48%), Gaps = 1/27 (3%)
Query: 3 NEKTKLKTTKIVVVQGTATDNVPSAND 29
NE T +VVVQ T PS N+
Sbjct: 39 NEHTDFNG-GVVVVQPIDTGFPPSLNE 64
>gnl|CDD|223238 COG0160, GabT, 4-aminobutyrate aminotransferase and related
aminotransferases [Amino acid transport and metabolism].
Length = 447
Score = 26.4 bits (59), Expect = 7.8
Identities = 9/22 (40%), Positives = 12/22 (54%), Gaps = 1/22 (4%)
Query: 80 PAYKKLVQALCSEHQIPLIKVD 101
+ K ++ LC EH I LI D
Sbjct: 242 KGFLKALRKLCREHGILLI-AD 262
>gnl|CDD|183639 PRK12634, flgD, flagellar basal body rod modification protein;
Reviewed.
Length = 221
Score = 26.0 bits (57), Expect = 9.2
Identities = 11/35 (31%), Positives = 18/35 (51%)
Query: 92 EHQIPLIKVDNNKKLGEWAGLSKLDNMGKARKVVG 126
+HQ PL ++N+ LG+ A S + +G V
Sbjct: 41 QHQDPLKPMENSAFLGQLAQFSTVQGIGDLNTKVS 75
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.315 0.130 0.375
Gapped
Lambda K H
0.267 0.0733 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 7,311,424
Number of extensions: 634644
Number of successful extensions: 745
Number of sequences better than 10.0: 1
Number of HSP's gapped: 741
Number of HSP's successfully gapped: 47
Length of query: 157
Length of database: 10,937,602
Length adjustment: 89
Effective length of query: 68
Effective length of database: 6,990,096
Effective search space: 475326528
Effective search space used: 475326528
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.0 bits)