RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy16564
(157 letters)
>3u5c_M 40S ribosomal protein S12, 40S ribosomal protein S11-A;
translation, ribosome, ribosomal, ribosomal R ribosomal
protein, eukaryotic ribosome, RNA-protein C; 3.00A
{Saccharomyces cerevisiae} PDB: 3u5g_M
Length = 143
Score = 136 bits (342), Expect = 5e-42
Identities = 56/119 (47%), Positives = 70/119 (58%), Gaps = 2/119 (1%)
Query: 17 QGTATDNVPSANDEGVSDINKALQQVLKTARAHDGLAKGLHEAAKALDRREAQLCVLADN 76
+ I AL+ VL+TA HDGLA+GL E+ KAL R EA L VL +
Sbjct: 6 EVVEVQEETVVEQTAEVTIEDALKVVLRTALVHDGLARGLRESTKALTRGEALLVVLVSS 65
Query: 77 CDEPAYKKLVQALC--SEHQIPLIKVDNNKKLGEWAGLSKLDNMGKARKVVGCSCVVIK 133
E KLV+ L E+++PLIKV + K+LGEWAGL K+D G ARKVVG S VV+K
Sbjct: 66 VTEANIIKLVEGLANDPENKVPLIKVADAKQLGEWAGLGKIDREGNARKVVGASVVVVK 124
>2kg4_A Growth arrest and DNA-damage-inducible protein GA alpha; GADD45,
flexible regions, monomer cycle; NMR {Homo sapiens}
Length = 165
Score = 131 bits (329), Expect = 1e-39
Identities = 31/115 (26%), Positives = 52/115 (45%), Gaps = 11/115 (9%)
Query: 30 EGVSDINKALQQVLKTARAHDGLAKGLHEAAKAL--DRREAQLCVLADNCDEPA------ 81
E + + AL++VL A + + G++EAAK L D LC+LA + D+
Sbjct: 14 ERMDKVGDALEEVLSKALSQRTITVGVYEAAKLLNVDPDNVVLCLLAADEDDDRDVALQI 73
Query: 82 YKKLVQALCSEHQIPLIKVDNNKKLGEWAGLSKLDNMGKARKV---VGCSCVVIK 133
+ L+QA C E+ I +++V N +L E L + CV++
Sbjct: 74 HFTLIQAFCCENDINILRVSNPGRLAELLLLETDAGPAASEGAEQPPDLHCVLVT 128
>2xzm_U Ribosomal protein L7AE containing protein; ribosome, translation;
3.93A {Tetrahymena thermophila} PDB: 2xzn_U
Length = 126
Score = 119 bits (300), Expect = 9e-36
Identities = 34/104 (32%), Positives = 64/104 (61%)
Query: 30 EGVSDINKALQQVLKTARAHDGLAKGLHEAAKALDRREAQLCVLADNCDEPAYKKLVQAL 89
+ +N+ L +V+K++ D ++KGLHE + ++ ++A +A++CD+ Y KLV+AL
Sbjct: 3 DQNQQLNEVLAKVIKSSNCQDAISKGLHEVLRTIEAKQALFVCVAEDCDQGNYVKLVKAL 62
Query: 90 CSEHQIPLIKVDNNKKLGEWAGLSKLDNMGKARKVVGCSCVVIK 133
C++++I + V LGE+ G + G+ +KV GCS + I+
Sbjct: 63 CAKNEIKYVSVPKRASLGEYLGHFTANAKGEIKKVKGCSSLAIR 106
>3ffm_A Growth arrest and DNA-damage-inducible protein GADD45 gamma;
beta-turn-helix, cell cycle; 2.30A {Homo sapiens}
Length = 167
Score = 117 bits (294), Expect = 2e-34
Identities = 28/134 (20%), Positives = 57/134 (42%), Gaps = 13/134 (9%)
Query: 8 LKTTKIVVVQGTATDNVPSANDEGVSDINKALQQVLKTARAHDGLAKGLHEAAKAL--DR 65
L + + + ++ + + + KAL ++L +A+ L G++E+AK L D
Sbjct: 3 LGSPEFMTLEEVRGQDTVPESTARMQGAGKALHELLLSAQRQGCLTAGVYESAKVLNVDP 62
Query: 66 REAQLCVLADNCDEPA------YKKLVQALCSEHQIPLIKVDNNKKLGEWAGLSKLDNMG 119
CVLA ++ + L+QA C E+ I +++V + ++L G +
Sbjct: 63 DNVTFCVLAAGEEDEGDIALQIHFTLIQAFCCENDIDIVRVGDVQRLAAIVGAGEEAGAP 122
Query: 120 KARKVVGCSCVVIK 133
C++I
Sbjct: 123 G-----DLHCILIS 131
>3cg6_A Growth arrest and DNA-damage-inducible 45 gamma; alpha/beta, cell
cycle; 1.70A {Mus musculus} PDB: 2wal_A
Length = 146
Score = 113 bits (285), Expect = 2e-33
Identities = 27/115 (23%), Positives = 51/115 (44%), Gaps = 13/115 (11%)
Query: 27 ANDEGVSDINKALQQVLKTARAHDGLAKGLHEAAKAL--DRREAQLCVLADNCDEPA--- 81
+ + KAL ++L +A+ L G++E+AK L D CVLA + ++
Sbjct: 1 GSTARMQGAGKALHELLLSAQRQGCLTAGVYESAKVLNVDPDNVTFCVLAADEEDEGDIA 60
Query: 82 ---YKKLVQALCSEHQIPLIKVDNNKKLGEWAGLSKLDNMGKARKVVGCSCVVIK 133
+ L+QA C E+ I +++V + ++L G + C++I
Sbjct: 61 LQIHFTLIQAFCCENDIDIVRVGDVQRLAAIVGSDEEGGAPG-----DLHCILIS 110
>2fc3_A 50S ribosomal protein L7AE; alpha-beta-alpha sandwich, ribosome,
RNA binding protein; 1.56A {Aeropyrum pernix} SCOP:
d.79.3.1 PDB: 3pla_C* 3id5_C* 3hax_D* 2hvy_D* 3hay_D*
3nvi_B 3nmu_C 3nvk_E* 3lwr_C 3lwo_C* 3lwq_C* 3lwp_C
3lwv_C 3hjw_C* 2czw_A 1pxw_A
Length = 124
Score = 85.2 bits (211), Expect = 3e-22
Identities = 31/101 (30%), Positives = 50/101 (49%), Gaps = 11/101 (10%)
Query: 34 DINKALQQVLKTARAHDGLAKGLHEAAKALDRREAQLCVLADNCDEPAYKKLVQALCSEH 93
D+ + + +K AR + KG +E KA++R A+L V+A++ D P + LC E
Sbjct: 11 DLAEKAYEAVKRARETGRIKKGTNETTKAVERGLAKLVVIAEDVDPPEIVMHLPLLCDEK 70
Query: 94 QIPLIKVDNNKKLGEWAGLSKLDNMGKARKVVGCSCVVIKV 134
+IP + V + K+LGE AG+ V + V I
Sbjct: 71 KIPYVYVPSKKRLGEAAGIE-----------VAAASVAIIE 100
>1rlg_A 50S ribosomal protein L7AE; protein-RNA, structural protein/RNA
complex; HET: 5BU; 2.70A {Archaeoglobus fulgidus} SCOP:
d.79.3.1
Length = 119
Score = 74.8 bits (184), Expect = 2e-18
Identities = 26/103 (25%), Positives = 42/103 (40%), Gaps = 11/103 (10%)
Query: 34 DINKALQQVLKTARAHDGLAKGLHEAAKALDRREAQLCVLADNCDEPAYKKLVQALCSEH 93
D+ +L+ R + KG +E KA++R A+L +A++ D P + LC E
Sbjct: 10 DMQNEALSLLEKVRESGKVKKGTNETTKAVERGLAKLVYIAEDVDPPEIVAHLPLLCEEK 69
Query: 94 QIPLIKVDNNKKLGEWAGLSKLDNMGKARKVVGCSCVVIKVRN 136
+P I V + LG G+ V C+ I
Sbjct: 70 NVPYIYVKSKNDLGRAVGIE-----------VPCASAAIINEG 101
>1vq8_F 50S ribosomal protein L7AE; ribosome 50S, protein-protein complex,
RNA-RNA complex, PROT complex, peptidyl transferase
reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A
{Haloarcula marismortui} SCOP: d.79.3.1 PDB: 1vq4_F*
1vq5_F* 1vq6_F* 1vq7_F* 1s72_F* 1vq9_F* 1vqk_F* 1vql_F*
1vqm_F* 1vqn_F* 1vqo_F* 1vqp_F* 1yhq_F* 1yi2_F* 1yij_F*
1yit_F* 1yj9_F* 1yjn_F* 1yjw_F* 2otj_F* ...
Length = 120
Score = 70.2 bits (172), Expect = 1e-16
Identities = 24/103 (23%), Positives = 41/103 (39%), Gaps = 11/103 (10%)
Query: 34 DINKALQQVLKTARAHDGLAKGLHEAAKALDRREAQLCVLADNCDEPAYKKLVQALCSEH 93
D+ + L+ AR + KG +E K+++R A+L +A++ + L E
Sbjct: 12 DLEDDALEALEVARDTGAVKKGTNETTKSIERGSAELVFVAEDVQPEEIVMHIPELADEK 71
Query: 94 QIPLIKVDNNKKLGEWAGLSKLDNMGKARKVVGCSCVVIKVRN 136
+P I V+ LG AGL VG + +
Sbjct: 72 GVPFIFVEQQDDLGHAAGLE-----------VGSAAAAVTDAG 103
>3v7e_A Ribosome-associated protein L7AE-like; RNA-protein complex, K-turn,
L7AE-like, A member L7AE/L30E superfamily; HET: SAM;
2.80A {Bacillus subtilis}
Length = 82
Score = 60.0 bits (146), Expect = 5e-13
Identities = 21/90 (23%), Positives = 35/90 (38%), Gaps = 12/90 (13%)
Query: 43 LKTARAHDGLAKGLHEAAKALDRREAQLCVLADNCDEPAYKKLVQALCSEHQIPLIKVDN 102
+ G + KAL R + V+A + D +V +L + I + V++
Sbjct: 3 YDKVSQAKSIIIGTKQTVKALKRGSVKEVVVAKDADPILTSSVV-SLAEDQGISVSMVES 61
Query: 103 NKKLGEWAGLSKLDNMGKARKVVGCSCVVI 132
KKLG+ G+ VG + V I
Sbjct: 62 MKKLGKACGIE-----------VGAAAVAI 80
>2ale_A SNU13, NHP2/L7AE family protein YEL026W; splicing, RNA, yeast,
His-TAG, RNA binding protein; 1.80A {Saccharomyces
cerevisiae} SCOP: d.79.3.1 PDB: 1zwz_A 2ozb_A 3siu_A
3siv_A 1e7k_A
Length = 134
Score = 58.8 bits (142), Expect = 5e-12
Identities = 22/89 (24%), Positives = 42/89 (47%)
Query: 25 PSANDEGVSDINKALQQVLKTARAHDGLAKGLHEAAKALDRREAQLCVLADNCDEPAYKK 84
P A + + + + V++ A L KG +EA K L+R ++ ++A +C+
Sbjct: 6 PKAFPLADAALTQQILDVVQQAANLRQLKKGANEATKTLNRGISEFIIMAADCEPIEILL 65
Query: 85 LVQALCSEHQIPLIKVDNNKKLGEWAGLS 113
+ LC + +P + V + LG G+S
Sbjct: 66 HLPLLCEDKNVPYVFVPSRVALGRACGVS 94
>2lbw_A H/ACA ribonucleoprotein complex subunit 2; L7AE, snoRNP, scaRNP,
RNA binding protein; NMR {Saccharomyces cerevisiae} PDB:
2lbx_A
Length = 121
Score = 58.4 bits (141), Expect = 6e-12
Identities = 23/103 (22%), Positives = 40/103 (38%), Gaps = 11/103 (10%)
Query: 34 DINKALQQVLKTARAHDGLAKGLHEAAKALDRREAQLCVLADNCDEPAYKKLVQALCSEH 93
+NK + + +K A + +G+ E KAL + E L V+A + + LC +H
Sbjct: 3 KLNKKVLKTVKKASKAKNVKRGVKEVVKALRKGEKGLVVIAGDIWPADVISHIPVLCEDH 62
Query: 94 QIPLIKVDNNKKLGEWAGLSKLDNMGKARKVVGCSCVVIKVRN 136
+P I + + + LG S V I +
Sbjct: 63 SVPYIFIPSKQDLGAAGATK-----------RPTSVVFIVPGS 94
>1xbi_A 50S ribosomal protein L7AE; alpha-beta-alpha sandwich fold, RNA
binding protein/structural protein complex; HET: EPE;
1.45A {Methanocaldococcus jannaschii} SCOP: d.79.3.1
PDB: 1ra4_A* 1sds_A 3paf_A
Length = 120
Score = 58.0 bits (140), Expect = 6e-12
Identities = 25/97 (25%), Positives = 42/97 (43%), Gaps = 11/97 (11%)
Query: 37 KALQQVLKTARAHDGLAKGLHEAAKALDRREAQLCVLADNCDEPAYKKLVQALCSEHQIP 96
+ +++L + KG +E KA++R A+L ++A++ + LC E IP
Sbjct: 15 EIQKELLDAVAKAQKIKKGANEVTKAVERGIAKLVIIAEDVKPEEVVAHLPYLCEEKGIP 74
Query: 97 LIKVDNNKKLGEWAGLSKLDNMGKARKVVGCSCVVIK 133
V + + LG+ AGL V S V I
Sbjct: 75 YAYVASKQDLGKAAGLE-----------VAASSVAII 100
>3o85_A Ribosomal protein L7AE; alpha beta sandwich fold, K-turn RNA
binding protein, KINK T ribosomal protein; 1.81A
{Giardia lamblia}
Length = 122
Score = 57.6 bits (139), Expect = 1e-11
Identities = 20/113 (17%), Positives = 44/113 (38%), Gaps = 11/113 (9%)
Query: 24 VPSANDEGVSDINKALQQVLKTARAHDGLAKGLHEAAKALDRREAQLCVLADNCDEPAYK 83
P A +++ L ++K + + +G +EA K ++R +A+L ++A + D
Sbjct: 4 DPRAIPFANEELSLELLNLVKHGASLQAIKRGANEALKQVNRGKAELVIIAADADPIEIV 63
Query: 84 KLVQALCSEHQIPLIKVDNNKKLGEWAGLSKLDNMGKARKVVGCSCVVIKVRN 136
+ C + +P + + + LG +S V I +
Sbjct: 64 LHLPLACEDKGVPYVFIGSKNALGRACNVS-----------VPTIVASIGKHD 105
>2jnb_A NHP2-like protein 1; splicing, KINK-turn RNA-binding protein, NHPX,
RNA binding protein; NMR {Homo sapiens} SCOP: d.79.3.1
Length = 144
Score = 55.0 bits (132), Expect = 2e-10
Identities = 25/110 (22%), Positives = 49/110 (44%)
Query: 4 EKTKLKTTKIVVVQGTATDNVPSANDEGVSDINKALQQVLKTARAHDGLAKGLHEAAKAL 63
++ I + T D P A + + K L +++ + + L KG +EA K L
Sbjct: 3 HHHHHHSSGIEEGRMTEADVNPKAYPLADAHLTKKLLDLVQQSCNYKQLRKGANEATKTL 62
Query: 64 DRREAQLCVLADNCDEPAYKKLVQALCSEHQIPLIKVDNNKKLGEWAGLS 113
+R ++ V+A + + + LC + +P + V + + LG G+S
Sbjct: 63 NRGISEFIVMAADAEPLEIILHLPLLCEDKNVPYVFVRSKQALGRACGVS 112
>2aif_A Ribosomal protein L7A; high-mobility like protein, transcription
factor, structural genomics, structural genomics
consortium, SGC; 1.90A {Cryptosporidium parvum} SCOP:
d.79.3.1
Length = 135
Score = 54.1 bits (130), Expect = 2e-10
Identities = 24/91 (26%), Positives = 44/91 (48%)
Query: 24 VPSANDEGVSDINKALQQVLKTARAHDGLAKGLHEAAKALDRREAQLCVLADNCDEPAYK 83
P A D+N + +++ A + L KG +EA KAL+R A++ +LA + +
Sbjct: 14 NPKAFPLASPDLNNKIINLVQQACNYKQLRKGANEATKALNRGIAEIVLLAADAEPLEIL 73
Query: 84 KLVQALCSEHQIPLIKVDNNKKLGEWAGLSK 114
+ +C + P + V + LG G+S+
Sbjct: 74 LHLPLVCEDKNTPYVFVRSKVALGRACGVSR 104
>3u5e_c L32, RP73, YL38, 60S ribosomal protein L30; translation, ribosome,
ribosomal R ribosomal protein, STM1, eukaryotic
ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3izc_f
3izs_f 3o58_Z 3o5h_Z 1t0k_B 3u5i_c 1ck2_A 1cn7_A 1nmu_B*
3jyw_2
Length = 105
Score = 44.8 bits (106), Expect = 4e-07
Identities = 20/107 (18%), Positives = 38/107 (35%), Gaps = 17/107 (15%)
Query: 27 ANDEGVSDINKALQQVLKTARAHDGLAKGLHEAAKALDRREAQLCVLADNCDEPAYKKLV 86
A + IN+ L V+K+ + G K+L + +++L ++A N K +
Sbjct: 2 APVKSQESINQKLALVIKSGK----YTLGYKSTVKSLRQGKSKLIIIAANTP-VLRKSEL 56
Query: 87 QALCSEHQIPLIKVD-NNKKLGEWAGLSKLDNMGKARKVVGCSCVVI 132
+ + + N +LG G K+ V I
Sbjct: 57 EYYAMLSKTKVYYFQGGNNELGTAVG-----------KLFRVGVVSI 92
>3jyw_G 60S ribosomal protein L8(A); eukaryotic ribosome, RACK1 protein,
flexible fitting; 8.90A {Thermomyces lanuginosus} PDB:
1s1i_G
Length = 113
Score = 44.2 bits (104), Expect = 9e-07
Identities = 13/77 (16%), Positives = 30/77 (38%)
Query: 37 KALQQVLKTARAHDGLAKGLHEAAKALDRREAQLCVLADNCDEPAYKKLVQALCSEHQIP 96
+ + + GL+ ++ ++A+L ++A++ D + ALC + +P
Sbjct: 11 AEGKSKQDASPKPYAVKYGLNHVVALIENKKAKLVLIANDVDPIELVVFLPALCKKMGVP 70
Query: 97 LIKVDNNKKLGEWAGLS 113
V +LG
Sbjct: 71 YAIVKGKARLGTLVNQK 87
>1w41_A 50S ribosomal protein L30E; electrostatic interactions,
thermostability, protein engineering; 1.7A {Thermococcus
celer} SCOP: d.79.3.1 PDB: 3n4y_A 3lfo_A 1w40_A 1go0_A
1go1_A 1h7m_A 1w42_A 1w3e_X 3ra6_A 3ra5_A 3n4z_A 2bo1_A
Length = 101
Score = 44.0 bits (104), Expect = 1e-06
Identities = 16/100 (16%), Positives = 37/100 (37%), Gaps = 17/100 (17%)
Query: 34 DINKALQQVLKTARAHDGLAKGLHEAAKALDRREAQLCVLADNCDEPAYKKLVQALCSEH 93
D L++ T + + G ++ + A+L ++A N P K+ ++
Sbjct: 3 DFAFELRKAQDTGK----IVMGARKSIQYAKMGGAKLIIVARNAR-PDIKEDIEYYARLS 57
Query: 94 QIPLIKVD-NNKKLGEWAGLSKLDNMGKARKVVGCSCVVI 132
IP+ + + + +LG G + S + +
Sbjct: 58 GIPVYEFEGTSVELGTLLG-----------RPHTVSALAV 86
>3iz5_F 60S ribosomal protein L9 (L6P); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins, ribosome; 5.50A {Triticum aestivum} PDB:
3izr_F
Length = 190
Score = 44.0 bits (104), Expect = 1e-06
Identities = 8/100 (8%), Positives = 14/100 (14%), Gaps = 17/100 (17%)
Query: 34 DINKALQQVLKTARAHDGLAKGLHEAAKALDRREAQLCVLADNCDEPAYKKLVQALCSEH 93
+Q K + + + +L +
Sbjct: 13 PEGVTVQVAAKVVT----VEGPRGKLTRNFKHLNLDFQLLEGGRK-LQVDAWFGTRRTMA 67
Query: 94 QIPLIKV-DNNKKLGEWAGLSKLDNMGKARKVVGCSCVVI 132
I N G G V
Sbjct: 68 AIRTAISHVQNLITGVTKG-----------YRYKMRFVYA 96
>3cpq_A 50S ribosomal protein L30E; RNA-protein, elongation factor,
ribonucleoprotein, structural genomics, NPPSFA; 1.90A
{Methanocaldococcus jannaschii}
Length = 110
Score = 42.5 bits (100), Expect = 3e-06
Identities = 20/100 (20%), Positives = 39/100 (39%), Gaps = 17/100 (17%)
Query: 34 DINKALQQVLKTARAHDGLAKGLHEAAKALDRREAQLCVLADNCDEPAYKKLVQALCSEH 93
D+NKA++ + T + + G K + E +L VLA N ++ V+
Sbjct: 8 DVNKAIRTAVDTGK----VILGSKRTIKFVKHGEGKLVVLAGNIP-KDLEEDVKYYAKLS 62
Query: 94 QIPLIKVD-NNKKLGEWAGLSKLDNMGKARKVVGCSCVVI 132
IP+ + + +LG G K + +++
Sbjct: 63 NIPVYQHKITSLELGAVCG-----------KPFPVAALLV 91
>3vi6_A 60S ribosomal protein L30; three-layer alpha/beta/ALPA; 1.59A {Homo
sapiens} PDB: 2zkr_6 1ysh_C
Length = 125
Score = 42.5 bits (100), Expect = 5e-06
Identities = 22/104 (21%), Positives = 40/104 (38%), Gaps = 17/104 (16%)
Query: 30 EGVSDINKALQQVLKTARAHDGLAKGLHEAAKALDRREAQLCVLADNCDEPAYKKLVQAL 89
+ + IN LQ V+K+ + G + K + + +A+L +LA+NC K ++
Sbjct: 10 KSLESINSRLQLVMKSGK----YVLGYKQTLKMIRQGKAKLVILANNCP-ALRKSEIEYY 64
Query: 90 CSEHQIPLIKVD-NNKKLGEWAGLSKLDNMGKARKVVGCSCVVI 132
+ + NN +LG G K + I
Sbjct: 65 AMLAKTGVHHYSGNNIELGTACG-----------KYYRVCTLAI 97
>4a18_G RPL30; ribosome, eukaryotic initiation factor 6, EIF6, transla
large ribosomal subunit, rRNA; 3.52A {Tetrahymena
thermophila} PDB: 4a19_G 4a1b_G 4a1d_G 4adx_6
Length = 104
Score = 40.5 bits (95), Expect = 2e-05
Identities = 22/100 (22%), Positives = 38/100 (38%), Gaps = 17/100 (17%)
Query: 34 DINKALQQVLKTARAHDGLAKGLHEAAKALDRREAQLCVLADNCDEPAYKKLVQALCSEH 93
+I L V+++ + G KA+ A+L +++NC K ++ S
Sbjct: 9 NIQSKLALVMRSGK----ATLGYKSTIKAIRNGTAKLVFISNNCP-TVRKSEIEYYASLA 63
Query: 94 QIPLIKVD-NNKKLGEWAGLSKLDNMGKARKVVGCSCVVI 132
QI + +N +LG G K CS + I
Sbjct: 64 QISIHHFVGSNVELGTACG-----------KYHRCSTMAI 92
>4a17_F RPL7A, 60S ribosomal protein L9; eukaryotic ribosome, ribosome,
eukaryotic initiation factor 60S, translation, large
ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB:
4a1a_F 4a1c_F 4a1e_F
Length = 255
Score = 39.9 bits (92), Expect = 1e-04
Identities = 15/82 (18%), Positives = 30/82 (36%)
Query: 32 VSDINKALQQVLKTARAHDGLAKGLHEAAKALDRREAQLCVLADNCDEPAYKKLVQALCS 91
V+ + L GL+ ++ ++A+L V+A + D + LC
Sbjct: 105 VAQAEAKKDGKQVETKKPIVLKYGLNHITTLIENKQAKLVVIAHDVDPIELVIFLPQLCR 164
Query: 92 EHQIPLIKVDNNKKLGEWAGLS 113
++ +P V LG+
Sbjct: 165 KNDVPFAFVKGKAALGKLVNKK 186
>3v7q_A Probable ribosomal protein YLXQ; L7AE superfamily, K-turn binding,
K-turn RNA, hypothetical R protein, RNA binding protein;
HET: CIT; 1.55A {Bacillus subtilis}
Length = 101
Score = 38.1 bits (89), Expect = 1e-04
Identities = 14/60 (23%), Positives = 26/60 (43%), Gaps = 1/60 (1%)
Query: 52 LAKGLHEAAKALDRREAQLCVLADNCDEPAYKKLVQALCSEHQIPLIKVDNNKKLGEWAG 111
+ G K + A+L +L ++ K V C+ +++P KV++ LG G
Sbjct: 20 VVSGEDLVIKEIRNARAKLVLLTEDAS-SNTAKKVTDKCNYYKVPYKKVESRAVLGRSIG 78
>3iz5_H 60S ribosomal protein L7A (L7AE); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins, ribosome; 5.50A {Triticum aestivum} PDB:
3izr_H
Length = 258
Score = 38.4 bits (88), Expect = 4e-04
Identities = 16/82 (19%), Positives = 32/82 (39%)
Query: 32 VSDINKALQQVLKTARAHDGLAKGLHEAAKALDRREAQLCVLADNCDEPAYKKLVQALCS 91
+ + A+ + GL+ +++ +AQL V+A + D + ALC
Sbjct: 108 LKRAQAEAEGKTVEAKKPIVVKYGLNHVTYLIEQSKAQLVVIAHDVDPIELVVWLPALCR 167
Query: 92 EHQIPLIKVDNNKKLGEWAGLS 113
+ ++P V +LG
Sbjct: 168 KMEVPYCIVKGKARLGSIVHKK 189
>3on1_A BH2414 protein; structural genomics, PSI-2, protein structure
initiative, MI center for structural genomics, MCSG,
unknown function; HET: MSE; 1.65A {Bacillus halodurans}
Length = 101
Score = 36.5 bits (85), Expect = 5e-04
Identities = 18/63 (28%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
Query: 52 LAKGLHEAAKALDRREAQLCVLADNCDEPAYKKLVQALCSEHQIPLIKVDNNKKLGEWAG 111
L G + KA+ + L +L+ + KKL+ C +QIP+ V N + LG G
Sbjct: 19 LLTGEEQVVKAVQNGQVTLVILSSDAGIHTKKKLLDK-CGSYQIPVKVVGNRQMLGRAIG 77
Query: 112 LSK 114
+
Sbjct: 78 KHE 80
>2zkr_f 60S ribosomal protein L7A; protein-RNA complex, 60S ribosomal
subunit, ribosomal protein/RNA complex; 8.70A {Canis
familiaris}
Length = 266
Score = 37.3 bits (85), Expect = 8e-04
Identities = 16/77 (20%), Positives = 31/77 (40%)
Query: 37 KALQQVLKTARAHDGLAKGLHEAAKALDRREAQLCVLADNCDEPAYKKLVQALCSEHQIP 96
KA + + L G++ ++ ++AQL V+A + D + ALC + +P
Sbjct: 121 KAAGKGDVPTKRPPVLRAGVNTVTTLVENKKAQLVVIAHDVDPIELVVFLPALCRKMGVP 180
Query: 97 LIKVDNNKKLGEWAGLS 113
+ +LG
Sbjct: 181 YCIIKGKARLGHLVHRK 197
>3izc_H 60S ribosomal protein RPL8 (L7AE); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_H
3o58_H 3o5h_H 3u5e_G 3u5i_G
Length = 256
Score = 36.1 bits (82), Expect = 0.003
Identities = 13/60 (21%), Positives = 28/60 (46%)
Query: 52 LAKGLHEAAKALDRREAQLCVLADNCDEPAYKKLVQALCSEHQIPLIKVDNNKKLGEWAG 111
+ GL+ ++ ++A+L ++A++ D + ALC + +P V +LG
Sbjct: 132 VKYGLNHVVALIENKKAKLVLIANDVDPIELVVFLPALCKKMGVPYAIVKGKARLGTLVN 191
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 32.5 bits (73), Expect = 0.050
Identities = 20/153 (13%), Positives = 46/153 (30%), Gaps = 45/153 (29%)
Query: 29 DEGVSDINKALQQVLKTARAHDGLAKGLHEAAKA-------LDRREAQLCVLADNCDEPA 81
+ D+ + +L + + L ++E + +
Sbjct: 32 NFDCKDVQDMPKSILSKEEIDHIIMSK-DAVSGTLRLFWTLLSKQEEMVQKFVEEVLRIN 90
Query: 82 YKKLVQALCSEHQIPLI----------KVDNN---------------KKLGEWAGLSKLD 116
YK L+ + +E + P + ++ N+ KL + L +L
Sbjct: 91 YKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQA--LLELR 148
Query: 117 NMGKARKVV-----GC--SCVVIKVRNWFLIIC 142
A+ V+ G + V + V + + C
Sbjct: 149 ---PAKNVLIDGVLGSGKTWVALDVCLSYKVQC 178
>4a0g_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase;
BIO3-BIO1, biotin synthesis; HET: PLP; 2.50A
{Arabidopsis thaliana} PDB: 4a0h_A* 4a0r_A* 4a0f_A*
Length = 831
Score = 29.5 bits (66), Expect = 0.46
Identities = 5/19 (26%), Positives = 12/19 (63%)
Query: 80 PAYKKLVQALCSEHQIPLI 98
P +++++ C +IP+I
Sbjct: 615 PLFQRVLVNECRNRKIPVI 633
>2pgf_A Adenosine deaminase; metallo-dependent hydrolase, structural
genomics, medical ST genomics of pathogenic protozoa
consortium, MSGPP; HET: MSE ADN; 1.89A {Plasmodium
vivax} PDB: 2pgr_A* 2qvn_A* 3ewc_A* 3ewd_A* 2amx_A
Length = 371
Score = 28.8 bits (65), Expect = 0.64
Identities = 13/53 (24%), Positives = 21/53 (39%), Gaps = 1/53 (1%)
Query: 50 DGLAKGLHEAAKALD-RREAQLCVLADNCDEPAYKKLVQALCSEHQIPLIKVD 101
+ KG+ E + LD + L + D E A K C +H+ + D
Sbjct: 154 QAIVKGIKEVVELLDHKIHVALMCIGDTGHEAANIKASADFCLKHKADFVGFD 206
>1on0_A YYCN protein; structural genomics, alpha-beta protein with
anti-parallel B strands, PSI, protein structure
initiative; 2.20A {Bacillus subtilis} SCOP: d.108.1.1
Length = 158
Score = 27.8 bits (62), Expect = 1.3
Identities = 13/51 (25%), Positives = 23/51 (45%), Gaps = 10/51 (19%)
Query: 42 VLKTARAHDGLAKGL----HEAAKALDRREAQLCVLADNCDEPA---YKKL 85
+ + R G AK +AA+++ R+ L V A N + A Y++
Sbjct: 96 LYEPYRGK-GYAKQALAALDQAARSMGIRKLSLHVFAHN--QTARKLYEQT 143
>3exn_A Probable acetyltransferase; GCN5-related N-acetyltransferase, MCSG,
P structural genomics, protein structure initiative;
HET: ACO; 1.80A {Thermus thermophilus}
Length = 160
Score = 27.8 bits (62), Expect = 1.3
Identities = 9/40 (22%), Positives = 12/40 (30%), Gaps = 7/40 (17%)
Query: 51 GLAKGLHE--AAKALDRREAQLCVLADNCDEPA---YKKL 85
GL + E AA R V N A ++
Sbjct: 104 GLGRQALERFAAGLDGVRRLYAVVYGHN--PKAKAFFQAQ 141
>2iuy_A Avigt4, glycosyltransferase; antibiotics, family GT-4, avilamycin
A; HET: MES; 2.1A {Streptomyces viridochromogenes} PDB:
2iv3_A*
Length = 342
Score = 27.8 bits (62), Expect = 1.7
Identities = 6/36 (16%), Positives = 13/36 (36%)
Query: 54 KGLHEAAKALDRREAQLCVLADNCDEPAYKKLVQAL 89
KG EAA +L + + + ++ +
Sbjct: 175 KGALEAAAFAHACGRRLVLAGPAWEPEYFDEITRRY 210
>3dod_A Adenosylmethionine-8-amino-7-oxononanoate aminotr;
aminotransferase, biotin biosynthesis, pyridoxal
phosphate, adenosyl-L-methionine; HET: PLP; 1.90A
{Bacillus subtilis} PDB: 3drd_A 3du4_A*
Length = 448
Score = 27.6 bits (62), Expect = 1.9
Identities = 5/19 (26%), Positives = 10/19 (52%)
Query: 80 PAYKKLVQALCSEHQIPLI 98
Y V+ LC+ + + +I
Sbjct: 231 EGYLAGVRELCTTYDVLMI 249
>2pdo_A Acetyltransferase YPEA; alpha-beta-alpha sandwich, structural
genomics, PSI-2, prote structure initiative; HET: MSE;
2.00A {Shigella flexneri 2A}
Length = 144
Score = 27.0 bits (60), Expect = 2.1
Identities = 12/51 (23%), Positives = 18/51 (35%), Gaps = 10/51 (19%)
Query: 42 VLKTARAHDGLAKGLHEA----AKALDRREAQLCVLADNCDEPA---YKKL 85
V R G+A L A + Q+ V DN + Y++L
Sbjct: 77 VHPEFRGR-GIANALLNRLEKKLIARGCPKIQINVPEDN--DMVLGMYERL 124
>1f89_A 32.5 kDa protein YLR351C; nitrilase, dimer, structural genomics,
four layer sandwich, PSI, protein structure initiative;
2.40A {Saccharomyces cerevisiae} SCOP: d.160.1.1
Length = 291
Score = 27.2 bits (61), Expect = 2.2
Identities = 17/103 (16%), Positives = 36/103 (34%), Gaps = 13/103 (12%)
Query: 1 MGNEKTKLKTTKIVVVQGTATDNVPSANDEGVSDINKALQQVLKTARAHDGLAK--GLHE 58
M K + K+ +VQ + + AN + +A + + + K L E
Sbjct: 1 MSASKILSQKIKVALVQLSGSSPDKMAN------LQRAATFIERAMKEQPD-TKLVVLPE 53
Query: 59 AAKAL---DRREAQLCVLADNCDEPAYKKLVQALCSEHQIPLI 98
+ D+ V+ + + L L ++ +I L+
Sbjct: 54 CFNSPYSTDQFRKYSEVINPKEPSTSVQFL-SNLANKFKIILV 95
>1ufh_A YYCN protein; alpha and beta, fold, acetyltransferase, structural
genomics, PSI, protein structure initiative; 2.20A
{Bacillus subtilis subsp} SCOP: d.108.1.1
Length = 180
Score = 26.8 bits (59), Expect = 2.6
Identities = 13/51 (25%), Positives = 22/51 (43%), Gaps = 10/51 (19%)
Query: 42 VLKTARAHDGLAKGLHEA----AKALDRREAQLCVLADNCDEPA---YKKL 85
+ + R G AK A A+++ R+ L V A N + A Y++
Sbjct: 120 LYEPYRGK-GYAKQALAALDQAARSMGIRKLSLHVFAHN--QTARKLYEQT 167
>1xs5_A 29 kDa protein, membrane lipoprotein TPN32; periplasmic binding
protein, methionine, membrane protein; 1.85A {Treponema
pallidum} SCOP: c.94.1.1
Length = 241
Score = 26.8 bits (60), Expect = 3.0
Identities = 6/23 (26%), Positives = 11/23 (47%)
Query: 70 LCVLADNCDEPAYKKLVQALCSE 92
L V N + + +++ALC
Sbjct: 200 LVVKRGNEADARVQAVLRALCGG 222
>3ttc_A HYPF, transcriptional regulatory protein; Zn finger, nucleotide
binding, hydrogenase maturation factor transferase; HET:
ADP; 1.86A {Escherichia coli} PDB: 3tsp_A* 3tsu_A*
3ttf_A* 3ttd_A 3tsq_A
Length = 657
Score = 27.0 bits (60), Expect = 3.0
Identities = 9/46 (19%), Positives = 13/46 (28%), Gaps = 8/46 (17%)
Query: 29 DEGVSDINKALQQVLKT--------ARAHDGLAKGLHEAAKALDRR 66
+ D+ QQ L HD LA+G +
Sbjct: 552 VDNQLDLATFWQQWLNWQAPVNQRAWAFHDALAQGFAALMREQATM 597
>3dsb_A Putative acetyltransferase; APC60368.2, ST genomics, PSI-2, protein
structure initiative, midwest CENT structural genomics,
MCSG; HET: MSE; 1.48A {Clostridium difficile}
Length = 157
Score = 26.3 bits (58), Expect = 3.1
Identities = 12/52 (23%), Positives = 19/52 (36%), Gaps = 11/52 (21%)
Query: 42 VLKTARAHDGLAKGLHEAAKALDRREA-----QLCVLADNCDEPA---YKKL 85
V K R G+ L K + ++ +L V +N A Y+ L
Sbjct: 92 VDKEYR-RKGIFNYLFNYIKNICDKDENIVGMRLYVEKEN--INAKATYESL 140
>3tfu_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; transferase,
transferase-transferase inhibitor complex; HET: PL8;
1.94A {Mycobacterium tuberculosis} PDB: 3tft_A* 3bv0_A*
3lv2_A*
Length = 457
Score = 26.8 bits (60), Expect = 3.3
Identities = 5/19 (26%), Positives = 11/19 (57%)
Query: 80 PAYKKLVQALCSEHQIPLI 98
P Y ++ +C +++ LI
Sbjct: 254 PRYLHDLRDICRRYEVLLI 272
>3g8w_A Lactococcal prophage PS3 protein 05; APC61042, acetyltransferase,
staphylococcus epidermidis ATCC structural genomics;
HET: NHE FLC; 2.70A {Staphylococcus epidermidis atcc
12228}
Length = 169
Score = 26.3 bits (58), Expect = 3.9
Identities = 5/37 (13%), Positives = 14/37 (37%), Gaps = 5/37 (13%)
Query: 52 LAKGLHEAAKALDRREAQLCVLADNCDEPA---YKKL 85
L + + AK + + + ++N A + +
Sbjct: 102 LINHIIQYAKEQNIETLMIAIASNN--ISAKVFFSSI 136
>4ef1_A Pheromone COB1/lipoprotein, YAEC family; periplasmic methionine
binding protein, NLPA lipoprotein, ST genomics; 1.90A
{Enterococcus faecalis} PDB: 4ef2_A*
Length = 246
Score = 26.4 bits (59), Expect = 4.4
Identities = 7/23 (30%), Positives = 13/23 (56%)
Query: 70 LCVLADNCDEPAYKKLVQALCSE 92
+ V ++ + KKLV+ L S+
Sbjct: 205 IAVRKEDENNENVKKLVKVLRSK 227
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes,
novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A
{Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A*
2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A*
1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A*
3bjm_A* 3eio_A* ...
Length = 740
Score = 26.7 bits (59), Expect = 4.4
Identities = 10/35 (28%), Positives = 15/35 (42%), Gaps = 3/35 (8%)
Query: 7 KLKTTKIVVVQGTATDNVPSANDEGVSDINKALQQ 41
K + +++ GTA DNV +S AL
Sbjct: 656 NFKQVEYLLIHGTADDNVHFQQSAQISK---ALVD 687
>3up9_A Putative uncharacterized protein; membrane lipoprotein,
L-methionine binding protein, NLPA LIP structural
genomics; HET: PG4 PE4; 2.35A {Actinomyces
odontolyticus}
Length = 245
Score = 26.1 bits (58), Expect = 4.8
Identities = 7/23 (30%), Positives = 10/23 (43%)
Query: 70 LCVLADNCDEPAYKKLVQALCSE 92
L D+ A KL + L S+
Sbjct: 204 LVWKGDSKKVDAIAKLEKLLHSD 226
>3tqw_A Methionine-binding protein; transport and binding proteins,
transport protein; HET: MSE; 2.00A {Coxiella burnetii}
Length = 240
Score = 26.0 bits (58), Expect = 5.0
Identities = 9/23 (39%), Positives = 14/23 (60%)
Query: 70 LCVLADNCDEPAYKKLVQALCSE 92
+ V D+ ++P K+LV AL S
Sbjct: 201 VAVREDDKNDPRLKQLVSALHSP 223
>2hgs_A Protein (glutathione synthetase); amine/carboxylate ligase; HET:
ADP GSH; 2.10A {Homo sapiens} SCOP: c.30.1.4 d.142.1.6
Length = 474
Score = 26.2 bits (57), Expect = 5.0
Identities = 9/52 (17%), Positives = 19/52 (36%), Gaps = 1/52 (1%)
Query: 48 AHDGLAKGLHEAAKALDRREAQ-LCVLADNCDEPAYKKLVQALCSEHQIPLI 98
GLA G+ +A + A L + + ++ ++ I +I
Sbjct: 184 PSKGLALGIAKAWELYGSPNALVLLIAQEKERNIFDQRAIENELLARNIHVI 235
>1s0a_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; fold
type I, subclass II, homodimer; HET: LLP; 1.71A
{Escherichia coli} SCOP: c.67.1.4 PDB: 1qj5_A* 1mlz_A*
1qj3_A* 1mly_A* 1s06_A* 1s08_A* 1s09_A* 1s07_A* 1mgv_A*
1dty_A*
Length = 429
Score = 26.3 bits (59), Expect = 5.2
Identities = 6/19 (31%), Positives = 10/19 (52%)
Query: 80 PAYKKLVQALCSEHQIPLI 98
P + K ++ +C I LI
Sbjct: 225 PEWLKRIRKICDREGILLI 243
>1p99_A Hypothetical protein PG110; structural genomics, PSI, protein
structure initiative, midwest center for structural
genomics, MCSG; 1.70A {Staphylococcus aureus subsp}
SCOP: c.94.1.1
Length = 295
Score = 26.2 bits (58), Expect = 5.5
Identities = 6/23 (26%), Positives = 11/23 (47%)
Query: 70 LCVLADNCDEPAYKKLVQALCSE 92
+ V + D Y K+V+ S+
Sbjct: 240 VAVNDKDLDNKTYAKIVELYHSK 262
>2aj6_A Hypothetical protein MW0638; structural genomics, joint center for
structural genomics, J protein structure initiative,
PSI-2; HET: MSE UNL; 1.63A {Staphylococcus aureus subsp}
SCOP: d.108.1.1
Length = 159
Score = 25.9 bits (57), Expect = 5.5
Identities = 10/42 (23%), Positives = 16/42 (38%), Gaps = 9/42 (21%)
Query: 51 GLAKGLHEA----AKALDRREAQLCVLADNCDEPA---YKKL 85
G+A L A AK ++ + + +N P K L
Sbjct: 106 GIATQLKIALEKWAKTMNAKRISNTIHKNN--LPMISLNKDL 145
>2cf7_A DPR; peroxide resistance, DPS-family, ferritin-like, ferroxidase,
iron-binding; HET: EPE; 1.50A {Streptococcus suis} PDB:
2ux1_A* 2bw1_A* 1umn_A* 2v15_A* 2xjm_A* 2xjn_A* 2xjo_A*
2xkq_A*
Length = 165
Score = 25.8 bits (57), Expect = 5.6
Identities = 4/26 (15%), Positives = 10/26 (38%)
Query: 18 GTATDNVPSANDEGVSDINKALQQVL 43
G+ + + ++D L Q +
Sbjct: 1 GSPAEIASFSPRPSLADSKAVLNQAV 26
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast
activation protein alpha,fapalpha,
dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo
sapiens}
Length = 719
Score = 26.3 bits (58), Expect = 5.7
Identities = 9/35 (25%), Positives = 15/35 (42%), Gaps = 3/35 (8%)
Query: 7 KLKTTKIVVVQGTATDNVPSANDEGVSDINKALQQ 41
+ +++ GTA DNV N ++ AL
Sbjct: 650 YFRNVDYLLIHGTADDNVHFQNSAQIAK---ALVN 681
>3tcm_A Alanine aminotransferase 2; pyridoxal phosphate (PLP)-binding; HET:
DCS; 2.71A {Hordeum vulgare}
Length = 500
Score = 25.9 bits (57), Expect = 6.3
Identities = 11/53 (20%), Positives = 19/53 (35%), Gaps = 13/53 (24%)
Query: 8 LKTTKIVVVQGTA------TDNV-----PSAND--EGVSDINKALQQVLKTAR 47
L++T IVVV G+ T + P + +S + + R
Sbjct: 447 LESTGIVVVPGSGFGQVPGTWHFRCTILPQEDKIPAVISRFTVFHEAFMSEYR 499
>3nui_A Pyruvate transaminase; amino transferase, transferase; 2.00A
{Vibrio fluvialis}
Length = 478
Score = 26.0 bits (58), Expect = 6.3
Identities = 4/19 (21%), Positives = 10/19 (52%)
Query: 80 PAYKKLVQALCSEHQIPLI 98
Y + + + ++ IP+I
Sbjct: 250 KGYFQAILPILRKYDIPVI 268
>2pg9_A Phosphomevalonate kinase; GHMP kinase superfamily, transferase;
HET: PMV ANP; 1.90A {Streptococcus pneumoniae} PDB:
1k47_A* 3gon_A*
Length = 337
Score = 26.1 bits (57), Expect = 6.7
Identities = 4/24 (16%), Positives = 10/24 (41%)
Query: 31 GVSDINKALQQVLKTARAHDGLAK 54
L+Q+ + ++ +AK
Sbjct: 268 STDIYTPLLRQLKEASQDLQAVAK 291
>3k2d_A ABC-type metal ION transport system, periplasmic; alpha/beta
domain, immune system; 2.60A {Vibrio vulnificus}
Length = 237
Score = 25.6 bits (57), Expect = 6.9
Identities = 5/23 (21%), Positives = 9/23 (39%)
Query: 70 LCVLADNCDEPAYKKLVQALCSE 92
+ DN + V+A +E
Sbjct: 204 IVARQDNVQNENVQNFVKAYQTE 226
>3gxa_A Outer membrane lipoprotein GNA1946; periplasmic, L-methionine
bingding, protein binding; 2.25A {Neisseria
meningitidis}
Length = 275
Score = 25.7 bits (57), Expect = 7.3
Identities = 5/23 (21%), Positives = 9/23 (39%)
Query: 70 LCVLADNCDEPAYKKLVQALCSE 92
V + D K + +A S+
Sbjct: 220 SAVKTADKDSQWLKDVTEAYNSD 242
>3ir1_A Outer membrane lipoprotein GNA1946; D-methionine cultured, protein
binding; 2.15A {Neisseria meningitidis}
Length = 245
Score = 25.7 bits (57), Expect = 8.0
Identities = 5/23 (21%), Positives = 9/23 (39%)
Query: 70 LCVLADNCDEPAYKKLVQALCSE 92
V + D K + +A S+
Sbjct: 198 SAVKTADKDSQWLKDVTEAYNSD 220
>3n5m_A Adenosylmethionine-8-amino-7-oxononanoate aminotr;
aminotransferase, csgid; 2.05A {Bacillus anthracis}
Length = 452
Score = 25.6 bits (57), Expect = 8.1
Identities = 7/19 (36%), Positives = 8/19 (42%)
Query: 80 PAYKKLVQALCSEHQIPLI 98
Y K V C +H LI
Sbjct: 235 QDYMKAVHETCQKHGALLI 253
>3dme_A Conserved exported protein; structural genomics, PSI-2, PROT
structure initiative, northeast structural genomics
consort NESG; HET: FAD TLA; 1.70A {Bordetella pertussis}
Length = 369
Score = 25.6 bits (57), Expect = 9.7
Identities = 14/67 (20%), Positives = 21/67 (31%), Gaps = 17/67 (25%)
Query: 67 EAQLCVLADNCDEPAYKKLVQALCSEHQIPLIKVDNNKKL------GEWAGLSKLDNMGK 120
+A+LCV K L+ C+ +P KL E + L +
Sbjct: 63 KARLCVRG--------KHLLYEYCAARGVP---HQRLGKLIVATSDAEASQLDSIARRAG 111
Query: 121 ARKVVGC 127
A V
Sbjct: 112 ANGVDDL 118
>3vth_A Hydrogenase maturation factor; carbamoyltransfer, maturation of
[NIFE]-hydrogenase, carbamoylphosphate, iron, HYPE; HET:
APC AP2; 2.00A {Thermoanaerobacter tengcongensis} PDB:
3vti_A
Length = 761
Score = 25.5 bits (56), Expect = 9.8
Identities = 8/52 (15%), Positives = 19/52 (36%), Gaps = 11/52 (21%)
Query: 26 SANDEGVSDINKALQQVLK-----------TARAHDGLAKGLHEAAKALDRR 66
D V D L+Q+ + +A+ H+ + ++ A + +
Sbjct: 640 LKEDRYVIDPELILRQIYEDYMKGFEKSYISAKFHNTVVNFTYDLANLIRKE 691
>2nn6_A Polymyositis/scleroderma autoantigen 1; RNA, exosome, PM/SCL,
phosphorolytic, hydrolase/transferase complex; 3.35A
{Homo sapiens} SCOP: d.14.1.4 d.101.1.1
Length = 358
Score = 25.4 bits (55), Expect = 10.0
Identities = 16/117 (13%), Positives = 40/117 (34%), Gaps = 2/117 (1%)
Query: 25 PSANDEGVSDINKALQQVLKTARAHDGLAKGLHEAAKALDRREAQLCVLAD-NCDEPAYK 83
P + + +N+ +++ L+ ++ D + + K R + D N + A
Sbjct: 109 PGRQSDLLVKLNRLMERCLRNSKCIDTESLCVVAGEKVWQIRVDLHLLNHDGNIIDAASI 168
Query: 84 KLVQALCSEHQIPLIKVDNNKKLGEWAGLSKLDNMGKARKVVGCSCVVIKVRNWFLI 140
+ ALC + P + V ++ + + S + + L+
Sbjct: 169 AAIVALCH-FRRPDVSVQGDEVTLYTPEERDPVPLSIHHMPICVSFAFFQQGTYLLV 224
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.315 0.130 0.375
Gapped
Lambda K H
0.267 0.0766 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,197,273
Number of extensions: 120780
Number of successful extensions: 353
Number of sequences better than 10.0: 1
Number of HSP's gapped: 337
Number of HSP's successfully gapped: 67
Length of query: 157
Length of database: 6,701,793
Length adjustment: 86
Effective length of query: 71
Effective length of database: 4,300,587
Effective search space: 305341677
Effective search space used: 305341677
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (24.1 bits)