RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy16564
(157 letters)
>d2fc3a1 d.79.3.1 (A:4-127) Ribosomal protein L7ae {Aeropyrum pernix
[TaxId: 56636]}
Length = 124
Score = 77.6 bits (191), Expect = 9e-20
Identities = 31/100 (31%), Positives = 50/100 (50%), Gaps = 11/100 (11%)
Query: 34 DINKALQQVLKTARAHDGLAKGLHEAAKALDRREAQLCVLADNCDEPAYKKLVQALCSEH 93
D+ + + +K AR + KG +E KA++R A+L V+A++ D P + LC E
Sbjct: 11 DLAEKAYEAVKRARETGRIKKGTNETTKAVERGLAKLVVIAEDVDPPEIVMHLPLLCDEK 70
Query: 94 QIPLIKVDNNKKLGEWAGLSKLDNMGKARKVVGCSCVVIK 133
+IP + V + K+LGE AG+ V + V I
Sbjct: 71 KIPYVYVPSKKRLGEAAGIE-----------VAAASVAII 99
>d1rlga_ d.79.3.1 (A:) Ribosomal protein L7ae {Archaeon
Archaeoglobus fulgidus [TaxId: 2234]}
Length = 113
Score = 75.2 bits (185), Expect = 5e-19
Identities = 26/103 (25%), Positives = 42/103 (40%), Gaps = 11/103 (10%)
Query: 34 DINKALQQVLKTARAHDGLAKGLHEAAKALDRREAQLCVLADNCDEPAYKKLVQALCSEH 93
D+ +L+ R + KG +E KA++R A+L +A++ D P + LC E
Sbjct: 4 DMQNEALSLLEKVRESGKVKKGTNETTKAVERGLAKLVYIAEDVDPPEIVAHLPLLCEEK 63
Query: 94 QIPLIKVDNNKKLGEWAGLSKLDNMGKARKVVGCSCVVIKVRN 136
+P I V + LG G+ V C+ I
Sbjct: 64 NVPYIYVKSKNDLGRAVGIE-----------VPCASAAIINEG 95
>d1vqof1 d.79.3.1 (F:1-119) Ribosomal protein L7ae {Archaeon
Haloarcula marismortui [TaxId: 2238]}
Length = 119
Score = 74.9 bits (184), Expect = 9e-19
Identities = 24/107 (22%), Positives = 43/107 (40%), Gaps = 11/107 (10%)
Query: 30 EGVSDINKALQQVLKTARAHDGLAKGLHEAAKALDRREAQLCVLADNCDEPAYKKLVQAL 89
+ +D+ + L+ AR + KG +E K+++R A+L +A++ + L
Sbjct: 7 DVPADLEDDALEALEVARDTGAVKKGTNETTKSIERGSAELVFVAEDVQPEEIVMHIPEL 66
Query: 90 CSEHQIPLIKVDNNKKLGEWAGLSKLDNMGKARKVVGCSCVVIKVRN 136
E +P I V+ LG AGL VG + +
Sbjct: 67 ADEKGVPFIFVEQQDDLGHAAGLE-----------VGSAAAAVTDAG 102
>d2alea1 d.79.3.1 (A:1-126) Small nuclear
ribonucleoprotein-associated protein 1, Snu13p
{Saccharomyces cerevisiae [TaxId: 4932]}
Length = 126
Score = 71.5 bits (175), Expect = 2e-17
Identities = 22/94 (23%), Positives = 44/94 (46%)
Query: 21 TDNVPSANDEGVSDINKALQQVLKTARAHDGLAKGLHEAAKALDRREAQLCVLADNCDEP 80
+ P A + + + + V++ A L KG +EA K L+R ++ ++A +C+
Sbjct: 2 SAPNPKAFPLADAALTQQILDVVQQAANLRQLKKGANEATKTLNRGISEFIIMAADCEPI 61
Query: 81 AYKKLVQALCSEHQIPLIKVDNNKKLGEWAGLSK 114
+ LC + +P + V + LG G+S+
Sbjct: 62 EILLHLPLLCEDKNVPYVFVPSRVALGRACGVSR 95
>d2ozba1 d.79.3.1 (A:4-128) Spliceosomal 15.5kd protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 125
Score = 69.6 bits (170), Expect = 1e-16
Identities = 26/109 (23%), Positives = 50/109 (45%), Gaps = 8/109 (7%)
Query: 25 PSANDEGVSDINKALQQVLKTARAHDGLAKGLHEAAKALDRREAQLCVLADNCDEPAYKK 84
P A + + K L +++ + + L KG +EA K L+R ++ V+A + +
Sbjct: 5 PKAYPLADAHLTKKLLDLVQQSCNYKQLRKGANEATKTLNRGISEFIVMAADAEPLEIIL 64
Query: 85 LVQALCSEHQIPLIKVDNNKKLGEWAGLSKLDNMGKARKVVGCSCVVIK 133
+ LC + +P + V + + LG G+S R V+ CS + +
Sbjct: 65 HLPLLCEDKNVPYVFVRSKQALGRACGVS--------RPVIACSVTIKE 105
>d2aifa1 d.79.3.1 (A:16-130) Ribosomal protein L7ae {Cryptosporidium
parvum [TaxId: 5807]}
Length = 115
Score = 68.4 bits (167), Expect = 3e-16
Identities = 22/81 (27%), Positives = 42/81 (51%)
Query: 34 DINKALQQVLKTARAHDGLAKGLHEAAKALDRREAQLCVLADNCDEPAYKKLVQALCSEH 93
D+N + +++ A + L KG +EA KAL+R A++ +LA + + + +C +
Sbjct: 7 DLNNKIINLVQQACNYKQLRKGANEATKALNRGIAEIVLLAADAEPLEILLHLPLVCEDK 66
Query: 94 QIPLIKVDNNKKLGEWAGLSK 114
P + V + LG G+S+
Sbjct: 67 NTPYVFVRSKVALGRACGVSR 87
>d1xbia1 d.79.3.1 (A:2-116) Ribosomal protein L7ae {Archaeon
Methanococcus jannaschii [TaxId: 2190]}
Length = 115
Score = 67.2 bits (164), Expect = 6e-16
Identities = 25/97 (25%), Positives = 42/97 (43%), Gaps = 11/97 (11%)
Query: 37 KALQQVLKTARAHDGLAKGLHEAAKALDRREAQLCVLADNCDEPAYKKLVQALCSEHQIP 96
+ +++L + KG +E KA++R A+L ++A++ + LC E IP
Sbjct: 11 EIQKELLDAVAKAQKIKKGANEVTKAVERGIAKLVIIAEDVKPEEVVAHLPYLCEEKGIP 70
Query: 97 LIKVDNNKKLGEWAGLSKLDNMGKARKVVGCSCVVIK 133
V + + LG+ AGL V S V I
Sbjct: 71 YAYVASKQDLGKAAGLE-----------VAASSVAII 96
>d2bo1a1 d.79.3.1 (A:1-100) Eukaryotic ribosomal protein L30 (L30e)
{Archaeon Thermococcus celer [TaxId: 2264]}
Length = 100
Score = 65.2 bits (159), Expect = 3e-15
Identities = 20/101 (19%), Positives = 39/101 (38%), Gaps = 17/101 (16%)
Query: 34 DINKALQQVLKTARAHDGLAKGLHEAAKALDRREAQLCVLADNCDEPAYKKLVQALCSEH 93
DI L++V+ + + G + ++L ++L ++A N P K+ ++
Sbjct: 2 DIAFELRKVIDSGK----YTLGYRKTVQSLKMGGSKLIIIARNT-RPDRKEDLEYYARLS 56
Query: 94 QIPLIKVD-NNKKLGEWAGLSKLDNMGKARKVVGCSCVVIK 133
P+ + + N +LG G K S V I
Sbjct: 57 GTPVYEFEGTNVELGTAVG-----------KPHTVSVVSIL 86
>d1w3ex1 d.79.3.1 (X:1-98) Eukaryotic ribosomal protein L30 (L30e)
{Archaeon Thermococcus celer [TaxId: 2264]}
Length = 98
Score = 59.4 bits (144), Expect = 5e-13
Identities = 15/100 (15%), Positives = 36/100 (36%), Gaps = 17/100 (17%)
Query: 34 DINKALQQVLKTARAHDGLAKGLHEAAKALDRREAQLCVLADNCDEPAYKKLVQALCSEH 93
D L++ T + + G ++ + A+L ++A N P K+ ++
Sbjct: 2 DFAFELRKAQDTGK----IVMGARKSIQYAKMGGAKLIIVARNAR-PDIKEDIEYYARLS 56
Query: 94 QIPLIKVD-NNKKLGEWAGLSKLDNMGKARKVVGCSCVVI 132
I + + + + +LG G + S + +
Sbjct: 57 GIAVYEFEGTSVELGTLLG-----------RPHTVSALAV 85
>d1t0kb_ d.79.3.1 (B:) Eukaryotic ribosomal protein L30 (L30e)
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 97
Score = 59.0 bits (143), Expect = 6e-13
Identities = 19/99 (19%), Positives = 36/99 (36%), Gaps = 17/99 (17%)
Query: 35 INKALQQVLKTARAHDGLAKGLHEAAKALDRREAQLCVLADNCDEPAYKKLVQALCSEHQ 94
IN+ L V+K+ + G K+L + +++L ++A N K ++ +
Sbjct: 2 INQKLALVIKSGK----YTLGYKSTVKSLRQGKSKLIIIAANT-PVLRKSELEYYAMLSK 56
Query: 95 IPLIKV-DNNKKLGEWAGLSKLDNMGKARKVVGCSCVVI 132
+ N +LG G K+ V I
Sbjct: 57 TKVYYFQGGNNELGTAVG-----------KLFRVGVVSI 84
>d1pixa2 c.14.1.4 (A:1-287) Glutaconyl-CoA decarboxylase A subunit
{Acidaminococcus fermentans [TaxId: 905]}
Length = 287
Score = 26.8 bits (58), Expect = 1.2
Identities = 9/60 (15%), Positives = 25/60 (41%), Gaps = 2/60 (3%)
Query: 18 GTATDNVPSANDEGVSDINKALQQVLKTARAHDGLAKGLHEAAKALDRREAQLCVLADNC 77
G +AN+E + I + + Q++K A+ +++ + + ++ L +
Sbjct: 16 GKPLKKADAANEEQLKKIEEEIHQLIKEAQEAGKADADVNKRGELTALQ--RIEKLVEPG 73
>d1t6ja_ a.127.1.2 (A:) Phenylalanine ammonia-lyase, PAL {Fungi
(Rhodosporidium toruloides) [TaxId: 5286]}
Length = 678
Score = 26.9 bits (59), Expect = 1.3
Identities = 6/37 (16%), Positives = 12/37 (32%)
Query: 46 ARAHDGLAKGLHEAAKALDRREAQLCVLADNCDEPAY 82
A + GL + K + ++ N P+
Sbjct: 381 ANTMEKTRLGLAQIGKLNFTQLTEMLNAGMNRGLPSC 417
>d2z0da1 d.3.1.22 (A:5-354) Cysteine protease ATG4B {Human (Homo
sapiens) [TaxId: 9606]}
Length = 350
Score = 26.5 bits (58), Expect = 1.5
Identities = 9/23 (39%), Positives = 13/23 (56%)
Query: 91 SEHQIPLIKVDNNKKLGEWAGLS 113
S HQI + V K +G+W G +
Sbjct: 120 SIHQIAQMGVGEGKSIGQWYGPN 142
>d2imra2 c.1.9.16 (A:91-398) Hypothetical protein DR0824
{Deinococcus radiodurans [TaxId: 1299]}
Length = 308
Score = 26.2 bits (56), Expect = 2.1
Identities = 7/49 (14%), Positives = 15/49 (30%)
Query: 18 GTATDNVPSANDEGVSDINKALQQVLKTARAHDGLAKGLHEAAKALDRR 66
TD+V S V + +Q+ + + + + R
Sbjct: 258 ALGTDSVASGETLNVREEVTFARQLYPGLDPRVLVRAAVKGGQRVVGGR 306
>d1st6a7 a.24.9.1 (A:719-855) Vinculin {Chicken (Gallus gallus)
[TaxId: 9031]}
Length = 137
Score = 25.1 bits (55), Expect = 3.0
Identities = 8/42 (19%), Positives = 22/42 (52%), Gaps = 4/42 (9%)
Query: 49 HDGLAKGLHEAAKALDRREAQLCVLA----DNCDEPAYKKLV 86
+ + L A ++ RR ++ ++A +N ++P +++ V
Sbjct: 24 ANMQPQMLVAGATSIARRANRILLVAKREVENSEDPKFREAV 65
>d1yova1 c.111.1.2 (A:6-534) Amyloid beta precursor protein-binding
protein 1, APPBP1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 529
Score = 25.7 bits (56), Expect = 3.3
Identities = 5/27 (18%), Positives = 10/27 (37%)
Query: 72 VLADNCDEPAYKKLVQALCSEHQIPLI 98
V+ + + + QIPL+
Sbjct: 120 VVVATQLPESTSLRLADVLWNSQIPLL 146
>d2byla1 c.67.1.4 (A:36-439) Ornithine aminotransferase {Human (Homo
sapiens) [TaxId: 9606]}
Length = 404
Score = 24.7 bits (53), Expect = 5.5
Identities = 8/19 (42%), Positives = 11/19 (57%)
Query: 80 PAYKKLVQALCSEHQIPLI 98
P Y V+ LC+ HQ+ I
Sbjct: 208 PGYLMGVRELCTRHQVLFI 226
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.315 0.130 0.375
Gapped
Lambda K H
0.267 0.0552 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 521,694
Number of extensions: 21478
Number of successful extensions: 77
Number of sequences better than 10.0: 1
Number of HSP's gapped: 75
Number of HSP's successfully gapped: 24
Length of query: 157
Length of database: 2,407,596
Length adjustment: 78
Effective length of query: 79
Effective length of database: 1,336,656
Effective search space: 105595824
Effective search space used: 105595824
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 49 (23.1 bits)