BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy16565
         (377 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1UOS|A Chain A, The Crystal Structure Of The Snake Venom Toxin Convulxin
 pdb|1UOS|C Chain C, The Crystal Structure Of The Snake Venom Toxin Convulxin
 pdb|1UMR|A Chain A, Crystal Structure Of The Platelet Activator Convulxin, A
           Disulfide Linked A4b4 Cyclic Tetramer From The Venom Of
           Crotalus Durissus Terrificus
 pdb|1UMR|B Chain B, Crystal Structure Of The Platelet Activator Convulxin, A
           Disulfide Linked A4b4 Cyclic Tetramer From The Venom Of
           Crotalus Durissus Terrificus
          Length = 135

 Score = 30.4 bits (67), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 18/45 (40%), Positives = 25/45 (55%), Gaps = 2/45 (4%)

Query: 82  KNFSHIAADNRPLKKSSSCSTIYLDDSTVSQPNLKN--TVKCSAL 124
           ++FSH++   R   K   CST + D S+VS  NL +    KCS L
Sbjct: 63  ESFSHVSIGLRVQNKEKQCSTKWSDGSSVSYDNLLDLYITKCSLL 107


>pdb|1J5W|A Chain A, Crystal Structure Of Glycyl-Trna Synthetase Alpha Chain
           (Tm0216) From Thermotoga Maritima At 1.95 A Resolution
 pdb|1J5W|B Chain B, Crystal Structure Of Glycyl-Trna Synthetase Alpha Chain
           (Tm0216) From Thermotoga Maritima At 1.95 A Resolution
          Length = 298

 Score = 30.0 bits (66), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 22/98 (22%), Positives = 44/98 (44%), Gaps = 1/98 (1%)

Query: 150 TRDPVPEDYDRYPPEHRQIYKFIRTLFNAAQLTAECAIITLVYLERLLTYAEVDITPGNW 209
           +R P    Y   P   ++ +++   +  + + + E  + +L YL   L   ++     NW
Sbjct: 68  SRRPTDGRYGENPNRLQRYFQYQVIIKPSPENSQELYLESLEYLGINLKEHDIRFVEDNW 127

Query: 210 KRIVLGAILLASKVW-DDQAVWNVDYCQILKDISVEDM 246
           +   LGA  +  +VW D   +    Y Q +  IS++D+
Sbjct: 128 ESPTLGAWGVGWEVWLDGXEITQFTYFQQIGGISLKDI 165


>pdb|3CQ0|A Chain A, Crystal Structure Of Tal2_yeast
 pdb|3CQ0|B Chain B, Crystal Structure Of Tal2_yeast
          Length = 339

 Score = 28.9 bits (63), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 21/65 (32%), Positives = 32/65 (49%), Gaps = 10/65 (15%)

Query: 15 TQRKVHSKSSRFEEYVPEGEESV---GNLQHISEREPEDWETDPSLHPKAGTIFLERSKL 71
          +++K    +S  E+    G   V   G+ + IS+ EP+D  T+PSL        L  SKL
Sbjct: 5  SEKKQKVATSSLEQLKKAGTHVVADSGDFEAISKYEPQDSTTNPSL-------ILAASKL 57

Query: 72 EQLVR 76
          E+  R
Sbjct: 58 EKYAR 62


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.316    0.131    0.381 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,292,688
Number of Sequences: 62578
Number of extensions: 462646
Number of successful extensions: 1117
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1116
Number of HSP's gapped (non-prelim): 6
length of query: 377
length of database: 14,973,337
effective HSP length: 100
effective length of query: 277
effective length of database: 8,715,537
effective search space: 2414203749
effective search space used: 2414203749
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.6 bits)