Query psy16565
Match_columns 377
No_of_seqs 274 out of 777
Neff 5.3
Searched_HMMs 46136
Date Fri Aug 16 16:17:41 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16565.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/16565hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1675|consensus 100.0 3.7E-70 7.9E-75 525.0 13.8 307 1-349 1-336 (343)
2 PF08613 Cyclin: Cyclin; Inte 99.9 7.2E-28 1.6E-32 213.5 10.3 143 117-261 2-149 (149)
3 KOG1674|consensus 99.8 8.5E-19 1.8E-23 165.2 12.9 158 118-283 35-200 (218)
4 PF00134 Cyclin_N: Cyclin, N-t 99.4 6.5E-13 1.4E-17 112.0 5.2 96 165-262 31-127 (127)
5 cd00043 CYCLIN Cyclin box fold 98.6 3.4E-07 7.5E-12 70.5 8.7 85 166-254 3-88 (88)
6 smart00385 CYCLIN domain prese 98.3 3.4E-06 7.5E-11 64.3 8.1 83 170-255 1-83 (83)
7 KOG0655|consensus 97.3 0.0011 2.4E-08 66.4 9.2 179 94-290 86-271 (408)
8 TIGR00569 ccl1 cyclin ccl1. Un 97.1 0.0021 4.5E-08 64.1 9.1 93 169-264 60-157 (305)
9 KOG0653|consensus 97.0 0.0038 8.3E-08 63.9 10.0 98 165-265 158-258 (391)
10 KOG0656|consensus 97.0 0.0043 9.4E-08 62.5 9.7 107 165-272 78-189 (335)
11 KOG1675|consensus 96.4 0.0025 5.5E-08 63.2 3.1 66 90-155 166-231 (343)
12 COG5024 Cyclin [Cell division 95.4 0.039 8.4E-07 57.6 7.1 110 167-284 215-326 (440)
13 COG5333 CCL1 Cdk activating ki 94.5 0.097 2.1E-06 52.1 6.9 92 170-264 50-148 (297)
14 KOG1674|consensus 94.0 0.034 7.3E-07 52.9 2.3 141 185-326 3-162 (218)
15 KOG4164|consensus 93.4 0.084 1.8E-06 54.3 4.1 110 165-276 382-494 (497)
16 KOG0834|consensus 85.2 1.8 3.9E-05 43.8 5.9 98 166-265 40-150 (323)
17 KOG0794|consensus 83.1 1.7 3.7E-05 42.2 4.5 113 164-284 40-166 (264)
18 KOG2496|consensus 80.7 6.7 0.00015 39.5 7.7 82 180-264 73-157 (325)
19 KOG0835|consensus 78.9 12 0.00025 38.3 8.8 91 171-263 29-138 (367)
20 PRK00423 tfb transcription ini 70.9 49 0.0011 32.9 11.0 110 165-284 122-232 (310)
21 PF02984 Cyclin_C: Cyclin, C-t 63.0 8.5 0.00018 31.2 3.3 88 168-258 3-90 (118)
22 KOG0654|consensus 49.0 13 0.00029 38.2 2.6 106 166-273 138-244 (359)
23 PF15147 DUF4578: Domain of un 37.3 16 0.00034 31.9 0.9 21 1-22 1-24 (127)
24 PRK00423 tfb transcription ini 30.3 3.8E+02 0.0082 26.7 9.5 91 166-260 217-307 (310)
25 PF11357 Spy1: Cell cycle regu 21.6 5.1E+02 0.011 23.2 7.6 97 167-270 14-116 (131)
No 1
>KOG1675|consensus
Probab=100.00 E-value=3.7e-70 Score=525.02 Aligned_cols=307 Identities=55% Similarity=0.766 Sum_probs=278.1
Q ss_pred CCCcccccccCCCcccccc-------cCCCC-----cccccCC-CCCCccCccccccCCC-CCCCCCCCCCCCCcccccc
Q psy16565 1 MGNKTSCCSYSTPTTQRKV-------HSKSS-----RFEEYVP-EGEESVGNLQHISERE-PEDWETDPSLHPKAGTIFL 66 (377)
Q Consensus 1 mg~~~~c~~~~~~~~~~~~-------~~~~~-----~~~~~~~-~~~~~~~~l~hi~~re-~~~~~~~ps~~p~~~t~f~ 66 (377)
|||+.+||++.+|+..++. ++..+ ......+ +..++.-+||||++|| +.+.|.+||.||.+.+||+
T Consensus 1 ~g~~~~~~~~~~p~~~~~~s~~~~~~~~~~~~v~~~~~~~~~~~~~~~~g~~l~~is~~~~~~~~ee~P~~~~~~~~i~~ 80 (343)
T KOG1675|consen 1 MGNMDSCCAAEPPRAEIKCSNANLQKVQLGEGVEATSHQRSTSAHAPGSGRALSHISKRETLRDSEEGPSRNPWAMDIFG 80 (343)
T ss_pred CCCcchhhhcCCchhhhhhhhhhhhhcccccceeeeecccCCCcccCccccchhccccccccccCCCCcccCcchhhhhh
Confidence 9999999999999887632 11111 1111122 2234445999999999 8889999999999999999
Q ss_pred ccchhhHHHHHhhhccccccccC---------CCC---CCccCCCcceeeeeCCccCCccchhHHHHHHHHHHHHhhcCC
Q psy16565 67 ERSKLEQLVRVYQYNKNFSHIAA---------DNR---PLKKSSSCSTIYLDDSTVSQPNLKNTVKCSALAIYYYIKNGN 134 (377)
Q Consensus 67 ~~s~~~~~~~~~~~~~~~s~~~~---------p~~---~~~k~sScStIflddsTvSqPnl~~tIkcvalaiyy~Ik~r~ 134 (377)
.+|++++.++ ++|++..+. |+- -.++++||+||+|||+|+|+|+++.+++|+++++||||+++.
T Consensus 81 ~~s~t~~~~~----~~~~~~~i~~~~~~~g~~p~~~p~~~~~~~s~~~i~l~~~~~s~p~l~~~~~~~s~~~y~hl~~~~ 156 (343)
T KOG1675|consen 81 FNSLTIGTVT----AERKEHMIPGPPQMFGILPRTSPTEGQKASSCSTIELDDSTVSQPHLKHTLKCFSLAFYYHLHNRQ 156 (343)
T ss_pred ccCcCcceeh----hhhhccccCCCcccCCcCCCCCcccccccccccceeeccccccCcccccCcccccHHHHHHhhcCC
Confidence 9999997777 888887765 221 468999999999999999999999999999999999999997
Q ss_pred Ccc---cccccccCCCCCCCCCCCCCCccCCCChhhHHHHHHHHHHHcCCChHHHHHHHHHHHHHhccCCCccCCcchHH
Q psy16565 135 SYK---YLEIFDEKLHPLTRDPVPEDYDRYPPEHRQIYKFIRTLFNAAQLTAECAIITLVYLERLLTYAEVDITPGNWKR 211 (377)
Q Consensus 135 ~~~---~l~IFdE~~hPLt~~~vp~~y~~~~P~~~~I~~FV~~L~~~a~ls~ec~IvaLVYieRL~~~~~i~i~p~nw~R 211 (377)
.++ ...||++.+||++.+.+|.++..+.|++..++.||.++|.+++++++|+|++|+|++|+..+++.++||.||+|
T Consensus 157 ~d~h~~~~~~~~~~~~~~s~~~ip~~~~~~~~~~~ri~k~v~~l~~~~qlta~~aiitL~~~erl~~~~e~~~~p~~w~r 236 (343)
T KOG1675|consen 157 PDGHQRSSLCFAEVLHPVSMGAIPGIHSRSHPGLVRIKKFVRILFSWAQLTAECDIITLVYAERLLWLAERDPCPRNWSR 236 (343)
T ss_pred CCcchhhhhhhhhhhchhhhccccccccccCcchhheehhhhhHhhhhhhhhccchHHHHhhHhhhhHhhcCCCcchhhh
Confidence 664 37999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhhhcccCCCcccccccccCCCCHHHHHHHHHHHHHhcCCceeeCHHHHHHHHHHHHHHHhhcCCCCCCCCC
Q psy16565 212 IVLGAILLASKVWDDQAVWNVDYCQILKDISVEDMNELERQFLEMLQFNINVPSSVYAKYYFDLRSLAESNDLTFPAEPL 291 (377)
Q Consensus 212 L~L~ALlLAsK~~dD~~~~N~~~a~i~~gisl~elN~LEr~FL~lL~fnL~Vs~s~y~kYyf~Lrsla~~~~l~fp~~PL 291 (377)
++++++++|+|+|+|.++||.+||+|+.++|++|||+|||+||++|+||++|+.++|+||||+||+||++|++.||++|
T Consensus 237 ~~~g~il~sskv~~dqs~wnvdycqIlKd~tveDmNe~ERqfLelLqfNinvp~svYAKyYfdlr~Lae~n~L~f~~eP- 315 (343)
T KOG1675|consen 237 AVLGEILLSSKVYDDQSVWNVDYCEILKDQSVDDMNALERQFLELLQFNINVPSSEYAKYYFDLRCLAEANPLLFPCEP- 315 (343)
T ss_pred hhhhhheehhhhhhhhhcccHHHHHHHhhccHhhHHHHHHHHHHHHhhccCccHHHHHHHHHHHhhhcccccccccccc-
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHHHHhhhcccccccccCCcccCCCcCcHHHHHHHHHHHHhhhhhhh
Q psy16565 292 SKERAQKLEAMSIVYAKYYFDLRSLAESNDLTFPAEPLSKERAQKLEAMSRIMEDKML 349 (377)
Q Consensus 292 ~~~~~~~le~~ssVy~k~~fsl~~~~~s~~L~~~~~~l~~~ra~~le~~s~~~~~~~~ 349 (377)
|+|+||+|+|||||.||||+.
T Consensus 316 -------------------------------------lsKeRaqkleA~sr~~EDkd~ 336 (343)
T KOG1675|consen 316 -------------------------------------LSKERAQKLEAMGRDAEDKDR 336 (343)
T ss_pred -------------------------------------chhhHHHHHHHHhhhhccchH
Confidence 999999999999999999984
No 2
>PF08613 Cyclin: Cyclin; InterPro: IPR013922 Cyclins are eukaryotic proteins that play an active role in controlling nuclear cell division cycles [], and regulate cyclin dependent kinases (CDKs). Cyclins, together with the p34 (cdc2) or cdk2 kinases, form the Maturation Promoting Factor (MPF). There are two main groups of cyclins, G1/S cyclins, which are essential for the control of the cell cycle at the G1/S (start) transition, and G2/M cyclins, which are essential for the control of the cell cycle at the G2/M (mitosis) transition. G2/M cyclins accumulate steadily during G2 and are abruptly destroyed as cells exit from mitosis (at the end of the M-phase). In most species, there are multiple forms of G1 and G2 cyclins. For example, in vertebrates, there are two G2 cyclins, A and B, and at least three G1 cyclins, C, D, and E. Cyclin homologues have been found in various viruses, including Saimiriine herpesvirus 2 (Herpesvirus saimiri) and Human herpesvirus 8 (HHV-8) (Kaposi's sarcoma-associated herpesvirus). These viral homologues differ from their cellular counterparts in that the viral proteins have gained new functions and eliminated others to harness the cell and benefit the virus []. This entry includes cyclin PHO80 and other cyclins that partner with the cyclin-dependent kinase (CDK) PHO85. The PHO80/PHO85 cyclin-cdk complex is used for a regulatory process other than cell-cycle control []. This entry also includes other PHO80-like cyclins that are involved in the cell-cycle control. They belong to the P/U family and interact preferentially with CDKA1 [].; GO: 0019901 protein kinase binding, 0000079 regulation of cyclin-dependent protein kinase activity; PDB: 2PK9_D 2PMI_D.
Probab=99.95 E-value=7.2e-28 Score=213.48 Aligned_cols=143 Identities=28% Similarity=0.482 Sum_probs=95.4
Q ss_pred hHHHHHHHHHHHHhhcCCCccc--ccccccCCCCCCCCCCCCCCccCCCChhhHHHHHHHHHHHcCCChHHHHHHHHHHH
Q psy16565 117 NTVKCSALAIYYYIKNGNSYKY--LEIFDEKLHPLTRDPVPEDYDRYPPEHRQIYKFIRTLFNAAQLTAECAIITLVYLE 194 (377)
Q Consensus 117 ~tIkcvalaiyy~Ik~r~~~~~--l~IFdE~~hPLt~~~vp~~y~~~~P~~~~I~~FV~~L~~~a~ls~ec~IvaLVYie 194 (377)
..|+.++..+-..+..+++... -.... ..+|....+....|+...+|.++|.+|+.+|+++++++++|+++||+||+
T Consensus 2 ~~~~~i~~~l~~~~~~n~~~~~~s~~~~~-~~~~~~~~~~~~~F~~~~~p~i~i~~fl~ri~~~~~~s~~~~i~aliYl~ 80 (149)
T PF08613_consen 2 KLVQSIARQLDRLINNNESTAQSSSSSSS-PSSPFQQSPKISQFHSQSVPSISIRDFLSRILKYTQCSPECLILALIYLD 80 (149)
T ss_dssp HHHHHHHHHHHHHHHHHH---------------T---------T--SS--SS-HHHHHHHHHHHTT--HHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccCchhhhhcccccc-cccccccccccccccCCCCCCCcHHHHHHHHHHHcCCChHHHHHHHHHHH
Confidence 3566777777777776543211 00000 11222222334568888889999999999999999999999999999999
Q ss_pred HHhc---cCCCccCCcchHHHHHHHHHhhhhhcccCCCcccccccccCCCCHHHHHHHHHHHHHhcCCce
Q psy16565 195 RLLT---YAEVDITPGNWKRIVLGAILLASKVWDDQAVWNVDYCQILKDISVEDMNELERQFLEMLQFNI 261 (377)
Q Consensus 195 RL~~---~~~i~i~p~nw~RL~L~ALlLAsK~~dD~~~~N~~~a~i~~gisl~elN~LEr~FL~lL~fnL 261 (377)
||.. ...+.+++.||||+|++|+|||+|||+|.+++|+.|+++ +|++++|||+||++||.+|+|+|
T Consensus 81 Rl~~~~~~~~~~~~~~~~~Rl~l~alilA~K~~~D~~~~n~~~a~v-~gis~~eln~lE~~fL~~l~~~L 149 (149)
T PF08613_consen 81 RLRQRSRKPNIPLNSSNIHRLFLTALILASKFLDDNTYSNKSWAKV-GGISLKELNELEREFLKLLDYNL 149 (149)
T ss_dssp HHHH--H-TT---STTTHHHHHHHHHHHHHHHH-SS---HHHHHHH-HTS-HHHHHHHHHHHHHHTTT--
T ss_pred HHHHhhcccccccccchhHHHHHHHHHHHHhhcccccccHHHHHhh-cCCCHHHHHHHHHHHHHHCCCcC
Confidence 9999 678899999999999999999999999999999999986 78999999999999999999997
No 3
>KOG1674|consensus
Probab=99.79 E-value=8.5e-19 Score=165.17 Aligned_cols=158 Identities=18% Similarity=0.310 Sum_probs=129.2
Q ss_pred HHHHHHHHHHHHhhcCCCcccccccccCCCCCCCCCCCCCCccCCCChhhHHHHHHHHHHHcCCChHHHHHHHHHHHHHh
Q psy16565 118 TVKCSALAIYYYIKNGNSYKYLEIFDEKLHPLTRDPVPEDYDRYPPEHRQIYKFIRTLFNAAQLTAECAIITLVYLERLL 197 (377)
Q Consensus 118 tIkcvalaiyy~Ik~r~~~~~l~IFdE~~hPLt~~~vp~~y~~~~P~~~~I~~FV~~L~~~a~ls~ec~IvaLVYieRL~ 197 (377)
.+.|+..++..+.+.++....--.+.+ .. -+..|+...++.++|.+|+.+|+++++++++|+|++|+||+|+.
T Consensus 35 ~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~------~~~~f~~~~~p~isi~~yleri~k~~~~s~~~lv~al~Yldr~~ 107 (218)
T KOG1674|consen 35 FLTCLSSLLKRLNDSNENLSRENNKSW-AS------PTTGFDGVSTPNISIRQYLERIFKYSKCSPECLVLALVYLDRFV 107 (218)
T ss_pred HHHHHHHHHHHHHhcChhhhccccccc-cc------ccccccCCCCCCcchHHHHHHHHHHhcCCchhhhhhhhhhhhhh
Confidence 455777777666555442210001111 11 13467777888999999999999999999999999999999999
Q ss_pred cc-------CCCccCCcc-hHHHHHHHHHhhhhhcccCCCcccccccccCCCCHHHHHHHHHHHHHhcCCceeeCHHHHH
Q psy16565 198 TY-------AEVDITPGN-WKRIVLGAILLASKVWDDQAVWNVDYCQILKDISVEDMNELERQFLEMLQFNINVPSSVYA 269 (377)
Q Consensus 198 ~~-------~~i~i~p~n-w~RL~L~ALlLAsK~~dD~~~~N~~~a~i~~gisl~elN~LEr~FL~lL~fnL~Vs~s~y~ 269 (377)
+. +...+...| .||++++++++|+|+.+|.++.|..|+ ++||++.+|||.||.+||..++|.+.|+.++|.
T Consensus 108 ~~~~~~~~~~~~~i~s~n~vhR~lit~v~vs~kf~~d~~y~n~~~a-~vggl~~~eln~lE~~~l~~~~~~l~i~~~~~~ 186 (218)
T KOG1674|consen 108 KQPQARSVKPQSLINSLNKVHRLLITTVTVSTKFLDDVYYSNAYYA-KVGGLTTDELNKLELDLLFLLDFRLIISRSEFN 186 (218)
T ss_pred hhhcccccCcccccccchhHHHHHHHHHHHHHhhccchhhhHHHHH-HhCCCChHhhhhhhHHHHhhCCeEEEechhHHH
Confidence 95 456788899 999999999999999999999996555 579999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcC
Q psy16565 270 KYYFDLRSLAESND 283 (377)
Q Consensus 270 kYyf~Lrsla~~~~ 283 (377)
.|...+......++
T Consensus 187 ~~~~~~~~~~~~~~ 200 (218)
T KOG1674|consen 187 LYEDLLEREENLNK 200 (218)
T ss_pred HHHHHHHHHHhccc
Confidence 99999998776654
No 4
>PF00134 Cyclin_N: Cyclin, N-terminal domain; InterPro: IPR006671 Cyclins are eukaryotic proteins that play an active role in controlling nuclear cell division cycles [], and regulate cyclin dependent kinases (CDKs). Cyclins, together with the p34 (cdc2) or cdk2 kinases, form the Maturation Promoting Factor (MPF). There are two main groups of cyclins, G1/S cyclins, which are essential for the control of the cell cycle at the G1/S (start) transition, and G2/M cyclins, which are essential for the control of the cell cycle at the G2/M (mitosis) transition. G2/M cyclins accumulate steadily during G2 and are abruptly destroyed as cells exit from mitosis (at the end of the M-phase). In most species, there are multiple forms of G1 and G2 cyclins. For example, in vertebrates, there are two G2 cyclins, A and B, and at least three G1 cyclins, C, D, and E. Cyclin homologues have been found in various viruses, including Saimiriine herpesvirus 2 (Herpesvirus saimiri) and Human herpesvirus 8 (HHV-8) (Kaposi's sarcoma-associated herpesvirus). These viral homologues differ from their cellular counterparts in that the viral proteins have gained new functions and eliminated others to harness the cell and benefit the virus []. Cyclins contain two domains of similar all-alpha fold, of which this entry is associated with the N-terminal domain.; PDB: 2W2H_B 3RGF_B 1KXU_A 1JKW_A 1URC_D 2WMB_D 1H26_D 1GY3_B 2UUE_D 1E9H_D ....
Probab=99.36 E-value=6.5e-13 Score=111.99 Aligned_cols=96 Identities=25% Similarity=0.415 Sum_probs=82.8
Q ss_pred hhhHHHHHHHHHHHcCCChHHHHHHHHHHHHHhccCCCccCCcchHHHHHHHHHhhhhhcccCCCcccccccccCC-CCH
Q psy16565 165 HRQIYKFIRTLFNAAQLTAECAIITLVYLERLLTYAEVDITPGNWKRIVLGAILLASKVWDDQAVWNVDYCQILKD-ISV 243 (377)
Q Consensus 165 ~~~I~~FV~~L~~~a~ls~ec~IvaLVYieRL~~~~~i~i~p~nw~RL~L~ALlLAsK~~dD~~~~N~~~a~i~~g-isl 243 (377)
...+.+|+..+....+++.+++.+|+.|++|++... .+.+.+++.+.++|+++|+|++++...+..+++...++ ++.
T Consensus 31 r~~~~~~i~~~~~~~~l~~~~~~~A~~~~dr~~~~~--~~~~~~~~li~~~cl~lA~K~~e~~~~~~~~~~~~~~~~~~~ 108 (127)
T PF00134_consen 31 RQIIIDWIIELCQRLKLSPETLHLAIYLFDRFLSKR--PVNRSKLQLIALACLFLASKMEEDNPPSISDLIRISDNTFTK 108 (127)
T ss_dssp HHHHHHHHHHHHHHTT-BHHHHHHHHHHHHHHHTTS---TTCCGHHHHHHHHHHHHHHHHTSS--HHHHHHHHTTTSSHH
T ss_pred HHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHhhc--ccccchhhhhhhhHHHHhhhhhccccchHHHHHHHHcCCCCH
Confidence 567999999999999999999999999999999865 36789999999999999999999998998898887654 999
Q ss_pred HHHHHHHHHHHHhcCCcee
Q psy16565 244 EDMNELERQFLEMLQFNIN 262 (377)
Q Consensus 244 ~elN~LEr~FL~lL~fnL~ 262 (377)
+++.+||+.+|..|+|+|+
T Consensus 109 ~~i~~~E~~iL~~L~f~ln 127 (127)
T PF00134_consen 109 KDILEMEREILSALNFDLN 127 (127)
T ss_dssp HHHHHHHHHHHHHTTT---
T ss_pred HHHHHHHHHHHHHCCCCcC
Confidence 9999999999999999986
No 5
>cd00043 CYCLIN Cyclin box fold. Protein binding domain functioning in cell-cycle and transcription control. Present in cyclins, TFIIB and Retinoblastoma (RB).The cyclins consist of 8 classes of cell cycle regulators that regulate cyclin dependent kinases (CDKs). TFIIB is a transcription factor that binds the TATA box. Cyclins, TFIIB and RB contain 2 copies of the domain.
Probab=98.58 E-value=3.4e-07 Score=70.50 Aligned_cols=85 Identities=22% Similarity=0.310 Sum_probs=76.0
Q ss_pred hhHHHHHHHHHHHcCCChHHHHHHHHHHHHHhccCCCccCCcchHHHHHHHHHhhhhhcccCCCcccccccccCCC-CHH
Q psy16565 166 RQIYKFIRTLFNAAQLTAECAIITLVYLERLLTYAEVDITPGNWKRIVLGAILLASKVWDDQAVWNVDYCQILKDI-SVE 244 (377)
Q Consensus 166 ~~I~~FV~~L~~~a~ls~ec~IvaLVYieRL~~~~~i~i~p~nw~RL~L~ALlLAsK~~dD~~~~N~~~a~i~~gi-sl~ 244 (377)
....+|+.++.+..+++.++...|..|++|++....+ .+.+.+.+..+|+.+|+|+.++ ..|+.++... .|. +.+
T Consensus 3 ~~~~~~l~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~ia~a~l~lA~k~~~~-~~~~~~~~~~-~~~~~~~ 78 (88)
T cd00043 3 PTPLDFLRRVAKALGLSPETLTLAVNLLDRFLLDYSV--LGRSPSLVAAAALYLAAKVEEI-PPWLKDLVHV-TGYATEE 78 (88)
T ss_pred chHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhccc--ccCChHHHHHHHHHHHHHHcCC-CCCHHHHhHH-hCCCCHH
Confidence 3578999999999999999999999999999986544 3788999999999999999999 8999999986 467 999
Q ss_pred HHHHHHHHHH
Q psy16565 245 DMNELERQFL 254 (377)
Q Consensus 245 elN~LEr~FL 254 (377)
++..+|+++|
T Consensus 79 ~i~~~e~~il 88 (88)
T cd00043 79 EILRMEKLLL 88 (88)
T ss_pred HHHHHHHHhC
Confidence 9999999875
No 6
>smart00385 CYCLIN domain present in cyclins, TFIIB and Retinoblastoma. A helical domain present in cyclins and TFIIB (twice) and Retinoblastoma (once). A protein recognition domain functioning in cell-cycle and transcription control.
Probab=98.30 E-value=3.4e-06 Score=64.31 Aligned_cols=83 Identities=22% Similarity=0.302 Sum_probs=71.6
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHhccCCCccCCcchHHHHHHHHHhhhhhcccCCCcccccccccCCCCHHHHHHH
Q psy16565 170 KFIRTLFNAAQLTAECAIITLVYLERLLTYAEVDITPGNWKRIVLGAILLASKVWDDQAVWNVDYCQILKDISVEDMNEL 249 (377)
Q Consensus 170 ~FV~~L~~~a~ls~ec~IvaLVYieRL~~~~~i~i~p~nw~RL~L~ALlLAsK~~dD~~~~N~~~a~i~~gisl~elN~L 249 (377)
+|+.++.+..+++.++.-.|..|++|.....++ ...+.+.+..+|+.+|+|+.+.. .|+.+++...++.+.+++..+
T Consensus 1 ~~l~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~--~~~~~~~ia~a~l~lA~k~~~~~-~~~~~~~~~~~~~~~~~i~~~ 77 (83)
T smart00385 1 DFLRRVCKALNLDPETLNLAVNLLDRFLSDYKF--LKYSPSLIAAAALYLAAKTEEIP-PWTKELVHYTGYFTEEEILRM 77 (83)
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhc--ccCCHHHHHHHHHHHHHHHhcCC-CCchhHhHhhCCCCHHHHHHH
Confidence 488999999999999999999999999985333 24788999999999999999876 799999987544499999999
Q ss_pred HHHHHH
Q psy16565 250 ERQFLE 255 (377)
Q Consensus 250 Er~FL~ 255 (377)
|+++|.
T Consensus 78 ~~~il~ 83 (83)
T smart00385 78 EKLLLE 83 (83)
T ss_pred HHHHhC
Confidence 999873
No 7
>KOG0655|consensus
Probab=97.31 E-value=0.0011 Score=66.35 Aligned_cols=179 Identities=15% Similarity=0.284 Sum_probs=136.0
Q ss_pred CccCCCcceeeeeCCccCCccchhHHHHHHHH----HHHHhhcCCCcccccccccCCCCCCCCCCCCCCccCCCChh-hH
Q psy16565 94 LKKSSSCSTIYLDDSTVSQPNLKNTVKCSALA----IYYYIKNGNSYKYLEIFDEKLHPLTRDPVPEDYDRYPPEHR-QI 168 (377)
Q Consensus 94 ~~k~sScStIflddsTvSqPnl~~tIkcvala----iyy~Ik~r~~~~~l~IFdE~~hPLt~~~vp~~y~~~~P~~~-~I 168 (377)
..+..-|+..++..+..| .++|++++ ++..|-+++..+.-++|=...||.- .|.-. -+
T Consensus 86 v~~r~~~k~~v~apsr~s------plp~lswgn~~eVW~lM~kkee~~l~~~~~l~qHpdl-----------qp~mRaIL 148 (408)
T KOG0655|consen 86 VTKRLMDKPMVIAPSRLS------PLPCLSWGNSKEVWLLMLKKEERYLRDKHFLEQHPDL-----------QPQMRAIL 148 (408)
T ss_pred ccccccCcccccccccCC------CCccccccCHHHHHHHHHccchhhhhhhHHHhhCCCC-----------CHHHHHHH
Confidence 333444777777655444 45676654 6778888876544455555567664 23322 36
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHhccCCCccCCcchHHHHHHHHHhhhhhcccCCCcccccccccCC-CCHHHHH
Q psy16565 169 YKFIRTLFNAAQLTAECAIITLVYLERLLTYAEVDITPGNWKRIVLGAILLASKVWDDQAVWNVDYCQILKD-ISVEDMN 247 (377)
Q Consensus 169 ~~FV~~L~~~a~ls~ec~IvaLVYieRL~~~~~i~i~p~nw~RL~L~ALlLAsK~~dD~~~~N~~~a~i~~g-isl~elN 247 (377)
.+++-.+-.--.|-.|++-+|.=|++|.+... ..+.-.|..-|-++||.+|+|+=+=...+-.+||-+..| .|-+||-
T Consensus 149 lDWlmEVCEvykLHRETFyLAvDy~DRyl~t~-~~v~kt~lQLIGitsLFIAAK~EEIYpPKl~eFAyvTDgAcs~ddIl 227 (408)
T KOG0655|consen 149 LDWLMEVCEVYKLHRETFYLAVDYFDRYLETQ-VEVSKTNLQLIGITSLFIAAKLEEIYPPKLIEFAYVTDGACSEDDIL 227 (408)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH-HHhhhhhHHHhhHHHHHHHHHHhhccCccccceeeeccCccchHHHH
Confidence 78999998888999999999999999999864 455667788889999999999888777888889877766 9999999
Q ss_pred HHHHHHHHhcCCcee-eCHHHHHHHHHHHHHHHhhcCCCCCCCC
Q psy16565 248 ELERQFLEMLQFNIN-VPSSVYAKYYFDLRSLAESNDLTFPAEP 290 (377)
Q Consensus 248 ~LEr~FL~lL~fnL~-Vs~s~y~kYyf~Lrsla~~~~l~fp~~P 290 (377)
.||.-.|+.|+|+|. |+.-.|-.-|.+|..+.+.+.+.+|-.+
T Consensus 228 tmE~iilkal~W~l~PiTii~WL~vylQv~~~n~~~k~l~Pq~~ 271 (408)
T KOG0655|consen 228 TMELIILKALKWELSPITIISWLNVYLQVDALNDAPKVLLPQYS 271 (408)
T ss_pred HHHHHHHHHhcccccceehHHHHHHHHHHHhcCCCCceeccccc
Confidence 999999999999996 5666677778888888777776666554
No 8
>TIGR00569 ccl1 cyclin ccl1. University).
Probab=97.14 E-value=0.0021 Score=64.07 Aligned_cols=93 Identities=23% Similarity=0.261 Sum_probs=73.3
Q ss_pred HHHHHHHHHHcC--CChHHHHHHHHHHHHHhccCCCccCCcchHHHHHHHHHhhhhhcccCCCcccccccccCCC---CH
Q psy16565 169 YKFIRTLFNAAQ--LTAECAIITLVYLERLLTYAEVDITPGNWKRIVLGAILLASKVWDDQAVWNVDYCQILKDI---SV 243 (377)
Q Consensus 169 ~~FV~~L~~~a~--ls~ec~IvaLVYieRL~~~~~i~i~p~nw~RL~L~ALlLAsK~~dD~~~~N~~~a~i~~gi---sl 243 (377)
..+|..+-...+ +..++.-.|.+|+.|+.....+ .....+-|.++||.||+|+=+- ...-.++++.+.+- ..
T Consensus 60 ~~~i~~~~~~lkp~Lpq~viaTAivyf~RFy~~~Sv--~~~~p~~Ia~tclfLA~KvEE~-~~si~~fv~~~~~~~~~~~ 136 (305)
T TIGR00569 60 EKRLLDFCSAFKPTMPTSVVGTAIMYFKRFYLNNSV--MEYHPKIIMLTCVFLACKVEEF-NVSIDQFVGNLKETPLKAL 136 (305)
T ss_pred HHHHHHHHHHhcCCCCchHHHHHHHHHhHHhccCch--hhcCHHHHHHHHHHHHHhcccc-CcCHHHHHhhccCCchhhH
Confidence 445666666778 9999999999999999986543 3567889999999999997554 34555676655443 45
Q ss_pred HHHHHHHHHHHHhcCCceeeC
Q psy16565 244 EDMNELERQFLEMLQFNINVP 264 (377)
Q Consensus 244 ~elN~LEr~FL~lL~fnL~Vs 264 (377)
++|-++|...|+.|+|+|.|.
T Consensus 137 ~~Il~~E~~lL~~L~F~L~V~ 157 (305)
T TIGR00569 137 EQVLEYELLLIQQLNFHLIVH 157 (305)
T ss_pred HHHHHHHHHHHHHCCCcEEee
Confidence 899999999999999999984
No 9
>KOG0653|consensus
Probab=97.01 E-value=0.0038 Score=63.91 Aligned_cols=98 Identities=19% Similarity=0.355 Sum_probs=76.9
Q ss_pred hhhHHHHHHHHHHHcCCChHHHHHHHHHHHHHhccCCCccCCcchHHHHHHHHH-hhhhhcccCCCc-ccccccccCC-C
Q psy16565 165 HRQIYKFIRTLFNAAQLTAECAIITLVYLERLLTYAEVDITPGNWKRIVLGAIL-LASKVWDDQAVW-NVDYCQILKD-I 241 (377)
Q Consensus 165 ~~~I~~FV~~L~~~a~ls~ec~IvaLVYieRL~~~~~i~i~p~nw~RL~L~ALl-LAsK~~dD~~~~-N~~~a~i~~g-i 241 (377)
..-+-+|+..+-....+..|++-+|.-+|||++....+ .+.-..-+-++||+ +|+|| ++.... =.++.-+..| +
T Consensus 158 R~iLvdwlvevh~~F~L~~ETL~LaVnliDRfL~~~~v--~~~~lqLvgvsalf~IA~K~-EE~~~P~v~dlv~isd~~~ 234 (391)
T KOG0653|consen 158 RAILVDWLVEVHEKFGLSPETLYLAVNLIDRFLSKVKV--PLKKLQLVGVSALLSIACKY-EEISLPSVEDLVLITDGAY 234 (391)
T ss_pred HHHHHHHHHHhhhhcCcCHHHHHHHHHHHHHHHHHhcc--cHHHhhHHhHHHHHHHHHhh-hhccCCccceeEeeeCCcc
Confidence 34578999999999999999999999999999997542 22223344567767 99999 554443 2356655555 9
Q ss_pred CHHHHHHHHHHHHHhcCCceeeCH
Q psy16565 242 SVEDMNELERQFLEMLQFNINVPS 265 (377)
Q Consensus 242 sl~elN~LEr~FL~lL~fnL~Vs~ 265 (377)
|.+|+-.||+..|..|+|++.++.
T Consensus 235 s~~~il~mE~~il~~L~f~l~~p~ 258 (391)
T KOG0653|consen 235 SREEILRMEKYILNVLEFDLSVPT 258 (391)
T ss_pred chHHHHHHHHHHHhccCeeecCCc
Confidence 999999999999999999999976
No 10
>KOG0656|consensus
Probab=96.97 E-value=0.0043 Score=62.49 Aligned_cols=107 Identities=15% Similarity=0.298 Sum_probs=83.1
Q ss_pred hhhHHHHHHHHHHHcCCChHHHHHHHHHHHHHhccCCCccCCcch--HHHHHHHHHhhhhhcccCCCcccccccccC--C
Q psy16565 165 HRQIYKFIRTLFNAAQLTAECAIITLVYLERLLTYAEVDITPGNW--KRIVLGAILLASKVWDDQAVWNVDYCQILK--D 240 (377)
Q Consensus 165 ~~~I~~FV~~L~~~a~ls~ec~IvaLVYieRL~~~~~i~i~p~nw--~RL~L~ALlLAsK~~dD~~~~N~~~a~i~~--g 240 (377)
-+.-.++|.++-+.-++.++|+.+|.-|+||++....+. ...+| .-|-++||-||+|+=.=...--.++-.... -
T Consensus 78 R~~A~~WIl~V~~~~~~~~~~~~LA~NYlDRFls~~~l~-k~k~W~lQLlAvaCLsLAsKmeE~~vPll~dl~v~~~~~~ 156 (335)
T KOG0656|consen 78 RKQALDWILKVCEEYNFEPLVFLLAMNYLDRFLSSQKLP-KDKPWMLQLLAVACLSLASKMEETDVPLLADLQVEYTDNV 156 (335)
T ss_pred HHHHHHHHHHHHHHhCCchHHHHHHHHHHHHhhcccccC-CCchHHHHHHHHHHHHHHHhhcCcCCchhhhhhhcccccc
Confidence 567789999999999999999999999999999865443 12234 566778999999987765333333322111 2
Q ss_pred CCHHHHHHHHHHHHHhcCCcee-eCHHHHHHHH
Q psy16565 241 ISVEDMNELERQFLEMLQFNIN-VPSSVYAKYY 272 (377)
Q Consensus 241 isl~elN~LEr~FL~lL~fnL~-Vs~s~y~kYy 272 (377)
|..+.|-+||.-.|..|+|+++ |++-.|..|+
T Consensus 157 feaktI~rmELLVLstL~Wrl~aVTP~sF~~~f 189 (335)
T KOG0656|consen 157 FEAKTIQRMELLVLSTLKWRLRAVTPFSFIDHF 189 (335)
T ss_pred ccHHHHHHHHHHHHhhccccccCCCchHHHHHH
Confidence 8899999999999999999996 7888887764
No 11
>KOG1675|consensus
Probab=96.36 E-value=0.0025 Score=63.22 Aligned_cols=66 Identities=15% Similarity=0.001 Sum_probs=59.8
Q ss_pred CCCCCccCCCcceeeeeCCccCCccchhHHHHHHHHHHHHhhcCCCcccccccccCCCCCCCCCCC
Q psy16565 90 DNRPLKKSSSCSTIYLDDSTVSQPNLKNTVKCSALAIYYYIKNGNSYKYLEIFDEKLHPLTRDPVP 155 (377)
Q Consensus 90 p~~~~~k~sScStIflddsTvSqPnl~~tIkcvalaiyy~Ik~r~~~~~l~IFdE~~hPLt~~~vp 155 (377)
++....++.||++|+.+++|..||+.+..+.++++++++++++..+..+|.++++.+++..+++-|
T Consensus 166 ~~~~~~~~~s~~~ip~~~~~~~~~~~ri~k~v~~l~~~~qlta~~aiitL~~~erl~~~~e~~~~p 231 (343)
T KOG1675|consen 166 CFAEVLHPVSMGAIPGIHSRSHPGLVRIKKFVRILFSWAQLTAECDIITLVYAERLLWLAERDPCP 231 (343)
T ss_pred hhhhhhchhhhccccccccccCcchhheehhhhhHhhhhhhhhccchHHHHhhHhhhhHhhcCCCc
Confidence 677888999999999999999999999999999999999999999999999999998877765333
No 12
>COG5024 Cyclin [Cell division and chromosome partitioning]
Probab=95.40 E-value=0.039 Score=57.63 Aligned_cols=110 Identities=22% Similarity=0.305 Sum_probs=85.6
Q ss_pred hHHHHHHHHHHHcCCChHHHHHHHHHHHHHhccCCCccCCcchHH-HHHHHHHhhhhhcccCCCcccccccccCC-CCHH
Q psy16565 167 QIYKFIRTLFNAAQLTAECAIITLVYLERLLTYAEVDITPGNWKR-IVLGAILLASKVWDDQAVWNVDYCQILKD-ISVE 244 (377)
Q Consensus 167 ~I~~FV~~L~~~a~ls~ec~IvaLVYieRL~~~~~i~i~p~nw~R-L~L~ALlLAsK~~dD~~~~N~~~a~i~~g-isl~ 244 (377)
-|-+|+-.+-...++.++++-++.-.++|++....+ +.+--. +-++|+.+|+||=+=....-++|.-+..| ++.+
T Consensus 215 ~Lv~wlvevH~~F~llpeTL~lainiiDrfLs~~~v---~l~k~QLvg~s~LfIa~K~EE~~~p~i~~l~~~t~g~~t~~ 291 (440)
T COG5024 215 ILVDWLVEVHGKFGLLPETLFLAINIIDRFLSSRVV---SLEKYQLVGISALFIASKYEEVNCPSIKDLVYATDGAFTRD 291 (440)
T ss_pred HHHHHHHHhcccccccchHHHHHHHHHHHHhccCcc---cHHHHHHHHHHHHHHHHhHhHhcCHHHHHHHHHHcccccHH
Confidence 477899999999999999999999999999986554 344333 34678999999876555444455544444 9999
Q ss_pred HHHHHHHHHHHhcCCceeeCHHHHHHHHHHHHHHHhhcCC
Q psy16565 245 DMNELERQFLEMLQFNINVPSSVYAKYYFDLRSLAESNDL 284 (377)
Q Consensus 245 elN~LEr~FL~lL~fnL~Vs~s~y~kYyf~Lrsla~~~~l 284 (377)
++-.+|+..|..|+|+|..+.-... ||.+....+.
T Consensus 292 ~i~~aE~~ml~~l~f~is~P~P~sF-----LRriSka~dy 326 (440)
T COG5024 292 DIIRAERYMLEVLDFNISWPSPMSF-----LRRISKASDY 326 (440)
T ss_pred HHHHHHHHHhhhcccccCCCChHHH-----HHHHHhhccc
Confidence 9999999999999999999876543 8877655443
No 13
>COG5333 CCL1 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH/TFIIK, cyclin H subunit [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]
Probab=94.54 E-value=0.097 Score=52.06 Aligned_cols=92 Identities=22% Similarity=0.252 Sum_probs=74.3
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHhccCCCccCCcchHHHHHHHHHhhhhhccc-------CCCcccccccccCCCC
Q psy16565 170 KFIRTLFNAAQLTAECAIITLVYLERLLTYAEVDITPGNWKRIVLGAILLASKVWDD-------QAVWNVDYCQILKDIS 242 (377)
Q Consensus 170 ~FV~~L~~~a~ls~ec~IvaLVYieRL~~~~~i~i~p~nw~RL~L~ALlLAsK~~dD-------~~~~N~~~a~i~~gis 242 (377)
.||.++-.+-++...++=.|.+|..|+.-... ..+.+.+-+.-+++.||+|+=|= .+..|.-|... .--+
T Consensus 50 k~i~~l~~~L~lp~~~laTAi~~f~Rf~Lk~s--v~e~~~~~vv~tcv~LA~K~ed~~~~I~i~~~~~~~~~se~-~~~s 126 (297)
T COG5333 50 KLIMDLCTRLNLPQTVLATAILFFSRFYLKNS--VEEISLYSVVTTCVYLACKVEDTPRDISIESFEARDLWSEE-PKSS 126 (297)
T ss_pred HHHHHHHHhcCCCcchHHHHHHHHHHHHhhcc--cccccHHHHHHhheeeeeecccccchhhHHHHHhhcccccc-cccc
Confidence 78888888999999999889999999987543 56778889999999999998771 11223234444 3578
Q ss_pred HHHHHHHHHHHHHhcCCceeeC
Q psy16565 243 VEDMNELERQFLEMLQFNINVP 264 (377)
Q Consensus 243 l~elN~LEr~FL~lL~fnL~Vs 264 (377)
-+.+-++|...|+.|+|+++|.
T Consensus 127 r~~Il~~E~~lLEaL~fd~~V~ 148 (297)
T COG5333 127 RERILEYEFELLEALDFDLHVH 148 (297)
T ss_pred HHHHHHHHHHHHHHcccceEec
Confidence 8999999999999999999995
No 14
>KOG1674|consensus
Probab=93.99 E-value=0.034 Score=52.91 Aligned_cols=141 Identities=17% Similarity=0.112 Sum_probs=97.0
Q ss_pred HHHHHHHHHH--HHhccCCC--ccCCcchHHHHHHHHHhhhhhcccCCC-----cccccccccCCC-CHHHHHHHHHHHH
Q psy16565 185 CAIITLVYLE--RLLTYAEV--DITPGNWKRIVLGAILLASKVWDDQAV-----WNVDYCQILKDI-SVEDMNELERQFL 254 (377)
Q Consensus 185 c~IvaLVYie--RL~~~~~i--~i~p~nw~RL~L~ALlLAsK~~dD~~~-----~N~~~a~i~~gi-sl~elN~LEr~FL 254 (377)
+++++..|++ ++...... .....+.+++||++++.+.|...|.+- +|.+|+..+.|+ .+...|.+|++||
T Consensus 3 ~~~~~s~~~~~~~~~~~~~~~~~~~~ss~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~p~isi~~yl 82 (218)
T KOG1674|consen 3 TLMTMSVYINPDKLRLNLPDNPTGRNSSITPIFLTCLSSLLKRLNDSNENLSRENNKSWASPTTGFDGVSTPNISIRQYL 82 (218)
T ss_pred hhhHhHhhcCccchhhccCcccccccccccchHHHHHHHHHHHHHhcChhhhcccccccccccccccCCCCCCcchHHHH
Confidence 5677888998 77765332 223446789999999999999999887 888999877665 6999999999999
Q ss_pred HhcCCceeeCHHHHHHHHHHHHHHHhhcC-----CCCCCCCCcHHHHHHHHHHHHHHHhh----hcccccccccCCcccC
Q psy16565 255 EMLQFNINVPSSVYAKYYFDLRSLAESND-----LTFPAEPLSKERAQKLEAMSIVYAKY----YFDLRSLAESNDLTFP 325 (377)
Q Consensus 255 ~lL~fnL~Vs~s~y~kYyf~Lrsla~~~~-----l~fp~~PL~~~~~~~le~~ssVy~k~----~fsl~~~~~s~~L~~~ 325 (377)
+.++|...++.++|..-+.-|..+.+.-+ -.+.+-.+.+ ..+-+....-|=+|+ +|+-...++..+|.-.
T Consensus 83 eri~k~~~~s~~~lv~al~Yldr~~~~~~~~~~~~~~~i~s~n~-vhR~lit~v~vs~kf~~d~~y~n~~~a~vggl~~~ 161 (218)
T KOG1674|consen 83 ERIFKYSKCSPECLVLALVYLDRFVKQPQARSVKPQSLINSLNK-VHRLLITTVTVSTKFLDDVYYSNAYYAKVGGLTTD 161 (218)
T ss_pred HHHHHHhcCCchhhhhhhhhhhhhhhhhcccccCcccccccchh-HHHHHHHHHHHHHhhccchhhhHHHHHHhCCCChH
Confidence 99999999999999887777777765422 1122222221 222333333333333 5555556666666555
Q ss_pred C
Q psy16565 326 A 326 (377)
Q Consensus 326 ~ 326 (377)
.
T Consensus 162 e 162 (218)
T KOG1674|consen 162 E 162 (218)
T ss_pred h
Confidence 4
No 15
>KOG4164|consensus
Probab=93.39 E-value=0.084 Score=54.28 Aligned_cols=110 Identities=22% Similarity=0.246 Sum_probs=82.8
Q ss_pred hhhHHHHHHHHHHHcCCChHHHHHHHHHHHHHhccCCCccCCcchHHHHHHHHHhhhhhcccCCCccccccccc---CCC
Q psy16565 165 HRQIYKFIRTLFNAAQLTAECAIITLVYLERLLTYAEVDITPGNWKRIVLGAILLASKVWDDQAVWNVDYCQIL---KDI 241 (377)
Q Consensus 165 ~~~I~~FV~~L~~~a~ls~ec~IvaLVYieRL~~~~~i~i~p~nw~RL~L~ALlLAsK~~dD~~~~N~~~a~i~---~gi 241 (377)
..+|.+-+++|-.-+.+...++-+|.||+|+|+-.. .|+-.|-+-.-=+|++||.|+-|=.--.-+++-... --+
T Consensus 382 irSlKREMr~l~~d~~id~~TVa~AyVYFEKliLkg--lisK~NRKlcAGAclLlaaKmnD~Kks~vKslIek~Ee~fR~ 459 (497)
T KOG4164|consen 382 IRSLKREMRELGEDCGIDVVTVAMAYVYFEKLILKG--LISKQNRKLCAGACLLLAAKMNDLKKSTVKSLIEKLEEQFRL 459 (497)
T ss_pred HHHHHHHHHHhhhccCccceeehhHHHHHHHHHHhh--hhhhhhhhHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhcc
Confidence 467889999999888999999999999999999753 334556665556789999998732221112222211 137
Q ss_pred CHHHHHHHHHHHHHhcCCceeeCHHHHHHHHHHHH
Q psy16565 242 SVEDMNELERQFLEMLQFNINVPSSVYAKYYFDLR 276 (377)
Q Consensus 242 sl~elN~LEr~FL~lL~fnL~Vs~s~y~kYyf~Lr 276 (377)
.-.||-..|.-.|-.|+|.|+++..+..-.|..|.
T Consensus 460 nrrdLia~Ef~VlvaLefaL~~~~~eVlPHy~RL~ 494 (497)
T KOG4164|consen 460 NRRDLIAFEFPVLVALEFALHLPEHEVLPHYRRLQ 494 (497)
T ss_pred cHHhhhhhhhhHHHhhhhhccCChhhcchHHHHHh
Confidence 78899999999999999999999999888887764
No 16
>KOG0834|consensus
Probab=85.22 E-value=1.8 Score=43.78 Aligned_cols=98 Identities=22% Similarity=0.267 Sum_probs=69.0
Q ss_pred hhHHHHHHHHHHHcCCChHHHHHHHHHHHHHhccCCCccCCcchHHHHHHHHHhhhhhcccCC----Cccccccccc-C-
Q psy16565 166 RQIYKFIRTLFNAAQLTAECAIITLVYLERLLTYAEVDITPGNWKRIVLGAILLASKVWDDQA----VWNVDYCQIL-K- 239 (377)
Q Consensus 166 ~~I~~FV~~L~~~a~ls~ec~IvaLVYieRL~~~~~i~i~p~nw~RL~L~ALlLAsK~~dD~~----~~N~~~a~i~-~- 239 (377)
..-..||..+-.+-+++.-++..|.+|..|+.....+. ...+.-+=.+||.||.|+=+-.- +-+..|..+- +
T Consensus 40 ~~~~~fI~elg~~L~~~~~ti~tA~~~~hRFy~~~s~~--~~~~~~vA~sclfLAgKvEetp~kl~dIi~~s~~~~~~~~ 117 (323)
T KOG0834|consen 40 QEGAKFIQELGVRLKMPQKTIATAIVIFHRFYMFHSFK--KFDPYTVAASCLFLAGKVEETPRKLEDIIKVSYRYLNPKD 117 (323)
T ss_pred HHHHHHHHHHHHHcCCCccchhhhhhhhhhhhhhcccc--cCcHHHHHHHHHHHHhhcccCcccHHHHHHHHHHHcCccc
Confidence 34678899999999999999999999999999865543 22345577788999999754321 1111111110 0
Q ss_pred -------CCCHHHHHHHHHHHHHhcCCceeeCH
Q psy16565 240 -------DISVEDMNELERQFLEMLQFNINVPS 265 (377)
Q Consensus 240 -------gisl~elN~LEr~FL~lL~fnL~Vs~ 265 (377)
.=..+++-.+|+-.|+.|.|+++|.-
T Consensus 118 ~~~~~~~~~~~~~Iv~~E~~lL~tl~Fdl~v~h 150 (323)
T KOG0834|consen 118 LELEEVYWELKERIVQLELLLLETLGFDLNVEH 150 (323)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHccCceeccC
Confidence 01246788999999999999999964
No 17
>KOG0794|consensus
Probab=83.07 E-value=1.7 Score=42.16 Aligned_cols=113 Identities=17% Similarity=0.154 Sum_probs=79.9
Q ss_pred ChhhHHHHHHHHHHHcCCChHHHHHHHHHHHHHhccCCCccCCcchHHHHHHHHHhhhhhcccC-C-----------Ccc
Q psy16565 164 EHRQIYKFIRTLFNAAQLTAECAIITLVYLERLLTYAEVDITPGNWKRIVLGAILLASKVWDDQ-A-----------VWN 231 (377)
Q Consensus 164 ~~~~I~~FV~~L~~~a~ls~ec~IvaLVYieRL~~~~~i~i~p~nw~RL~L~ALlLAsK~~dD~-~-----------~~N 231 (377)
-.+....+|..+-...++--.++--|.||+.|+..+..+ ...+..-+..+|+.||+|+=+-. . ..|
T Consensus 40 l~i~~~n~I~~lg~~lklRQ~ViATAivY~rRfy~r~S~--k~~~p~lla~TClyLAcKvEE~~i~~~r~l~~~a~~L~~ 117 (264)
T KOG0794|consen 40 LKIFMANVIQKLGQHLKLRQRVIATAIVYFRRFYLRKSL--KEIEPRLLAPTCLYLACKVEECPIVHIRLLVNEAKVLKT 117 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--hccCHHHHHHHHHHHHhhhhhcchHHHHHHHHHHHHHhh
Confidence 356677888888888888888888889999999986542 23344578889999999987653 1 111
Q ss_pred c--ccccccCCCCHHHHHHHHHHHHHhcCCceeeCHHHHHHHHHHHHHHHhhcCC
Q psy16565 232 V--DYCQILKDISVEDMNELERQFLEMLQFNINVPSSVYAKYYFDLRSLAESNDL 284 (377)
Q Consensus 232 ~--~~a~i~~gisl~elN~LEr~FL~lL~fnL~Vs~s~y~kYyf~Lrsla~~~~l 284 (377)
+ .|.+.+ .....++-++|...|+.||+-|-|-- =|..|..+.++.|+
T Consensus 118 ~f~~~~e~~-~~~~~~I~e~Ef~llE~Ld~~LIVhH-----PYrsL~q~~qd~gi 166 (264)
T KOG0794|consen 118 RFSYWPEKF-PYERKDILEMEFYLLEALDCYLIVHH-----PYRSLLQFVQDMGI 166 (264)
T ss_pred hcccchhhc-CCCcCcchhhhhhHHhhhceeEEEec-----CCccHHHHHHHhcc
Confidence 1 233332 36678899999999999999999832 13345555555554
No 18
>KOG2496|consensus
Probab=80.66 E-value=6.7 Score=39.46 Aligned_cols=82 Identities=17% Similarity=0.235 Sum_probs=62.6
Q ss_pred CCChHHHHHHHHHHHHHhccCCCccCCcchHHHHHHHHHhhhhhcccCCCcccccccccCC---CCHHHHHHHHHHHHHh
Q psy16565 180 QLTAECAIITLVYLERLLTYAEVDITPGNWKRIVLGAILLASKVWDDQAVWNVDYCQILKD---ISVEDMNELERQFLEM 256 (377)
Q Consensus 180 ~ls~ec~IvaLVYieRL~~~~~i~i~p~nw~RL~L~ALlLAsK~~dD~~~~N~~~a~i~~g---isl~elN~LEr~FL~l 256 (377)
.+.+++.-.|+.|+-|+.-...+ .....+-|+.+|+.||.|+ ++.+++-.+|++...| -+.+.+-..|...|+.
T Consensus 73 ~lp~~Vv~TA~~fFkRffL~nsv--me~~pk~I~~tc~flA~Ki-eef~ISieqFvkn~~~~~~k~~e~vLk~E~~llqs 149 (325)
T KOG2496|consen 73 NLPTSVVSTAIEFFKRFFLENSV--MEYSPKIIMATCFFLACKI-EEFYISIEQFVKNMNGRKWKTHEIVLKYEFLLLQS 149 (325)
T ss_pred CCchHHHHHHHHHHHHHHHhcch--hhcChHHHHHHHHHHHhhh-HhheecHHHHHhhccCcccccHHHHHhchHHHHHh
Confidence 67778777888999998864322 2344568889999999995 4666666677765442 5688899999999999
Q ss_pred cCCceeeC
Q psy16565 257 LQFNINVP 264 (377)
Q Consensus 257 L~fnL~Vs 264 (377)
|+|+|.|-
T Consensus 150 L~f~L~vh 157 (325)
T KOG2496|consen 150 LKFSLTVH 157 (325)
T ss_pred hhhhheec
Confidence 99999883
No 19
>KOG0835|consensus
Probab=78.92 E-value=12 Score=38.28 Aligned_cols=91 Identities=25% Similarity=0.341 Sum_probs=60.4
Q ss_pred HHHHHHHHcCCChHHHHHHHHHHHHHhccCCCccCCcchHHHHHHHHHhhhhhcccCC----Cccc-cccc---------
Q psy16565 171 FIRTLFNAAQLTAECAIITLVYLERLLTYAEVDITPGNWKRIVLGAILLASKVWDDQA----VWNV-DYCQ--------- 236 (377)
Q Consensus 171 FV~~L~~~a~ls~ec~IvaLVYieRL~~~~~i~i~p~nw~RL~L~ALlLAsK~~dD~~----~~N~-~~a~--------- 236 (377)
||..-----+|+-.|.+.++|.++|++..- .+-..+..-++.+|++||||.=+... +.|+ +|-.
T Consensus 29 ~Iqea~ILL~L~q~a~atgqVLFqRf~~~k--s~v~~~~e~vv~ACv~LASKiEE~Prr~rdVinVFh~L~~r~~~~~~~ 106 (367)
T KOG0835|consen 29 LIQEAGILLNLPQVAMATGQVLFQRFCYSK--SFVRHDFEIVVMACVLLASKIEEEPRRIRDVINVFHYLEQRRESEAAE 106 (367)
T ss_pred HHHhhhHhhcCcHHHHHHHHHHHHHHHhcc--ccccccHHHHHHHHHHHHhhhccccccHhHHHHHHHHHHHHHhccCcc
Confidence 333333344789999999999999999743 23345677899999999999766543 2221 0000
Q ss_pred --ccC-C-CC-HHHHHHHHHHHHHhcCCceee
Q psy16565 237 --ILK-D-IS-VEDMNELERQFLEMLQFNINV 263 (377)
Q Consensus 237 --i~~-g-is-l~elN~LEr~FL~lL~fnL~V 263 (377)
+.. . +. -..+-..|++.|..|+|.++|
T Consensus 107 ~~~~~~~~~~lk~~~ir~e~~ILr~LGF~~Hv 138 (367)
T KOG0835|consen 107 HLILARLYINLKMQVIRAERRILRELGFDVHV 138 (367)
T ss_pred hhhhhhHHhhhhhHHHHHHHHHHHHhCCeeee
Confidence 000 0 11 124567899999999999998
No 20
>PRK00423 tfb transcription initiation factor IIB; Reviewed
Probab=70.89 E-value=49 Score=32.94 Aligned_cols=110 Identities=12% Similarity=0.083 Sum_probs=82.0
Q ss_pred hhhHHHHHHHHHHHcCCChHHHHHHHHHHHHHhccCCCccCCcchHHHHHHHHHhhhhhcccCCCcccccccccCCCCHH
Q psy16565 165 HRQIYKFIRTLFNAAQLTAECAIITLVYLERLLTYAEVDITPGNWKRIVLGAILLASKVWDDQAVWNVDYCQILKDISVE 244 (377)
Q Consensus 165 ~~~I~~FV~~L~~~a~ls~ec~IvaLVYieRL~~~~~i~i~p~nw~RL~L~ALlLAsK~~dD~~~~N~~~a~i~~gisl~ 244 (377)
...-+..|.++-...+++..+.=-|..+..++....- +...+..-+..+||-+|.+. ++...+-++++.+ .+++.+
T Consensus 122 l~~a~~~I~~~~~~L~Lp~~v~e~A~~iyk~~~~~~~--~rgrs~~~i~AAclYiACR~-~~~prtl~eI~~~-~~v~~k 197 (310)
T PRK00423 122 LAFALSELDRIASQLGLPRSVREEAAVIYRKAVEKGL--IRGRSIEGVVAAALYAACRR-CKVPRTLDEIAEV-SRVSRK 197 (310)
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCc--ccCCCHHHHHHHHHHHHHHH-cCCCcCHHHHHHH-hCCCHH
Confidence 4556677888899999998887778778777776522 34556778888999999996 5555677788876 589999
Q ss_pred HHHHHHHHHHHhcCCceeeC-HHHHHHHHHHHHHHHhhcCC
Q psy16565 245 DMNELERQFLEMLQFNINVP-SSVYAKYYFDLRSLAESNDL 284 (377)
Q Consensus 245 elN~LEr~FL~lL~fnL~Vs-~s~y~kYyf~Lrsla~~~~l 284 (377)
++...++.++..|++++.+. ++.| +..++...++
T Consensus 198 ~i~~~~~~l~k~L~~~~~~~~p~~~------i~r~~~~L~L 232 (310)
T PRK00423 198 EIGRCYRFLLRELNLKLPPTDPIDY------VPRFASELGL 232 (310)
T ss_pred HHHHHHHHHHHHhCCCCCCCCHHHH------HHHHHHHcCC
Confidence 99999999999999887542 3333 3445555444
No 21
>PF02984 Cyclin_C: Cyclin, C-terminal domain; InterPro: IPR004367 Cyclins are eukaryotic proteins that play an active role in controlling nuclear cell division cycles [], and regulate cyclin dependent kinases (CDKs). Cyclins, together with the p34 (cdc2) or cdk2 kinases, form the Maturation Promoting Factor (MPF). There are two main groups of cyclins, G1/S cyclins, which are essential for the control of the cell cycle at the G1/S (start) transition, and G2/M cyclins, which are essential for the control of the cell cycle at the G2/M (mitosis) transition. G2/M cyclins accumulate steadily during G2 and are abruptly destroyed as cells exit from mitosis (at the end of the M-phase). In most species, there are multiple forms of G1 and G2 cyclins. For example, in vertebrates, there are two G2 cyclins, A and B, and at least three G1 cyclins, C, D, and E. Cyclin homologues have been found in various viruses, including Saimiriine herpesvirus 2 (Herpesvirus saimiri) and Human herpesvirus 8 (HHV-8) (Kaposi's sarcoma-associated herpesvirus). These viral homologues differ from their cellular counterparts in that the viral proteins have gained new functions and eliminated others to harness the cell and benefit the virus []. This is the C-terminal domain of cyclins.; GO: 0005634 nucleus; PDB: 3QHR_D 3QHW_B 1W98_B 1URC_D 2WMB_D 1H26_D 1GY3_B 2UUE_D 1E9H_D 2IW9_D ....
Probab=63.04 E-value=8.5 Score=31.25 Aligned_cols=88 Identities=24% Similarity=0.286 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHhccCCCccCCcchHHHHHHHHHhhhhhcccCCCcccccccccCCCCHHHHH
Q psy16565 168 IYKFIRTLFNAAQLTAECAIITLVYLERLLTYAEVDITPGNWKRIVLGAILLASKVWDDQAVWNVDYCQILKDISVEDMN 247 (377)
Q Consensus 168 I~~FV~~L~~~a~ls~ec~IvaLVYieRL~~~~~i~i~p~nw~RL~L~ALlLAsK~~dD~~~~N~~~a~i~~gisl~elN 247 (377)
.+.|++++.+.........-++-..++--+.... ......-.|=.+|+.+|.+.++....|+...... .|++.+++.
T Consensus 3 p~~Fl~~~~~~~~~~~~~~~~a~~l~el~l~~~~--fl~~~PS~iAaAai~lA~~~~~~~~~~~~~l~~~-t~~~~~~l~ 79 (118)
T PF02984_consen 3 PYDFLRRFLKISNADQEVRNLARYLLELSLLDYE--FLQYPPSVIAAAAILLARKILGKEPPWPESLEKL-TGYDKEDLK 79 (118)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHSHH--HTTS-HHHHHHHHHHHHHHHHHSSTCSHHHHHHH-HTS-HHHHH
T ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhhcc--ccCCCHHHHHHHHHHHHHHHhCccccCCccchhh-cCCCHHHHH
Confidence 4788888866555555555555555553332211 2223334677888999999988656777666554 478777776
Q ss_pred HHHHHHHHhcC
Q psy16565 248 ELERQFLEMLQ 258 (377)
Q Consensus 248 ~LEr~FL~lL~ 258 (377)
..=..+..++.
T Consensus 80 ~c~~~i~~~~~ 90 (118)
T PF02984_consen 80 ECIELIQELLS 90 (118)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 65555555443
No 22
>KOG0654|consensus
Probab=49.01 E-value=13 Score=38.19 Aligned_cols=106 Identities=22% Similarity=0.319 Sum_probs=83.7
Q ss_pred hhHHHHHHHHHHHcCCChHHHHHHHHHHHHHhccCCCccCCcchHHHHHHHHHhhhhhcccCCCcccccccccCC-CCHH
Q psy16565 166 RQIYKFIRTLFNAAQLTAECAIITLVYLERLLTYAEVDITPGNWKRIVLGAILLASKVWDDQAVWNVDYCQILKD-ISVE 244 (377)
Q Consensus 166 ~~I~~FV~~L~~~a~ls~ec~IvaLVYieRL~~~~~i~i~p~nw~RL~L~ALlLAsK~~dD~~~~N~~~a~i~~g-isl~ 244 (377)
..+.++.-.+.+......+++-++..|++|++.+..+ ...-.+++=.+|+++|+|+-.-....-.+|+-+..+ ++-.
T Consensus 138 gilvdwlvevsee~r~~~e~l~ls~~~~drfl~~~~~--~~~k~ql~g~s~m~I~sk~ee~~~~~~~ef~~itd~ty~~~ 215 (359)
T KOG0654|consen 138 GILVDWLVEVSEEYRLTFETLYLSVNYRDRFLSYKEV--NKQKLQLVGISAMLIASKYEEIKEPRVEEFCYITDNTYTYW 215 (359)
T ss_pred hhhhhhhhHHHHHHHhhhhheeecHHHHHHHhccCcc--HHHHHHHhCcccceeeccchhhcchHHHHHHhhhhhhhHHH
Confidence 4577777788877899999999999999999986433 233345667789999999998877655567766655 8899
Q ss_pred HHHHHHHHHHHhcCCceeeCHHHHHHHHH
Q psy16565 245 DMNELERQFLEMLQFNINVPSSVYAKYYF 273 (377)
Q Consensus 245 elN~LEr~FL~lL~fnL~Vs~s~y~kYyf 273 (377)
++-.||...|..+.|.+.++...--.+-|
T Consensus 216 qv~~~~~~il~~l~~~~~~pt~~~~l~~~ 244 (359)
T KOG0654|consen 216 QVLRMEIDILNALTFELVRPTSKTFLRRF 244 (359)
T ss_pred HHHHHHHHHHHHhHHHHhCchHHHHHHHH
Confidence 99999999999999999998876544433
No 23
>PF15147 DUF4578: Domain of unknown function (DUF4578)
Probab=37.26 E-value=16 Score=31.89 Aligned_cols=21 Identities=48% Similarity=0.847 Sum_probs=13.6
Q ss_pred CCCccccccc--CCCccc-ccccCC
Q psy16565 1 MGNKTSCCSY--STPTTQ-RKVHSK 22 (377)
Q Consensus 1 mg~~~~c~~~--~~~~~~-~~~~~~ 22 (377)
|||.+ ||.+ +.|..- |+++.+
T Consensus 1 MGNrl-CCggSWScPstfq~kkK~g 24 (127)
T PF15147_consen 1 MGNRL-CCGGSWSCPSTFQRKKKTG 24 (127)
T ss_pred CCCcc-ccCCCcCCchhHhhhhhcc
Confidence 99988 7776 467663 444444
No 24
>PRK00423 tfb transcription initiation factor IIB; Reviewed
Probab=30.35 E-value=3.8e+02 Score=26.68 Aligned_cols=91 Identities=10% Similarity=0.147 Sum_probs=64.6
Q ss_pred hhHHHHHHHHHHHcCCChHHHHHHHHHHHHHhccCCCccCCcchHHHHHHHHHhhhhhcccCCCcccccccccCCCCHHH
Q psy16565 166 RQIYKFIRTLFNAAQLTAECAIITLVYLERLLTYAEVDITPGNWKRIVLGAILLASKVWDDQAVWNVDYCQILKDISVED 245 (377)
Q Consensus 166 ~~I~~FV~~L~~~a~ls~ec~IvaLVYieRL~~~~~i~i~p~nw~RL~L~ALlLAsK~~dD~~~~N~~~a~i~~gisl~e 245 (377)
..-.+||.++...-.++..+.-.|.-.+.+... .++ ....+..-|..+||.+|++..... .+-++.+.+ .|++...
T Consensus 217 ~~p~~~i~r~~~~L~L~~~v~~~A~~i~~~a~~-~~l-~~Gr~P~sIAAAaIYlA~~~~g~~-~t~keIa~v-~~Vs~~t 292 (310)
T PRK00423 217 TDPIDYVPRFASELGLSGEVQKKAIEILQKAKE-KGL-TSGKGPTGLAAAAIYIASLLLGER-RTQREVAEV-AGVTEVT 292 (310)
T ss_pred CCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHh-cCc-ccCCCHHHHHHHHHHHHHHHhCCC-CCHHHHHHH-cCCCHHH
Confidence 456899999999999998877766655555554 332 356778889999999999976543 455566664 5788888
Q ss_pred HHHHHHHHHHhcCCc
Q psy16565 246 MNELERQFLEMLQFN 260 (377)
Q Consensus 246 lN~LEr~FL~lL~fn 260 (377)
+..-=++++..|+..
T Consensus 293 I~~~ykel~~~l~~~ 307 (310)
T PRK00423 293 VRNRYKELAEKLDIK 307 (310)
T ss_pred HHHHHHHHHHHhCcc
Confidence 776666666655543
No 25
>PF11357 Spy1: Cell cycle regulatory protein; InterPro: IPR020984 Speedy (Spy1) is a cell cycle regulatory protein which activates CDK2, the major kinase that allows progression through G1/S phase and further replication events. Spy1 expression overcomes a p27-induced cell cycle arrest to allow for DNA synthesis, so cell cycle progression occurs due to an interaction between Spy1 and p27 []. Spy1 is also known as Ringo protein A.
Probab=21.62 E-value=5.1e+02 Score=23.16 Aligned_cols=97 Identities=13% Similarity=0.156 Sum_probs=58.4
Q ss_pred hHHHHHHHHHHHcCCChHHHHHHH--HHHHHHhccCCCccCCcchHHHHHHHHHhhhhhcccCCC-cccccccccCC---
Q psy16565 167 QIYKFIRTLFNAAQLTAECAIITL--VYLERLLTYAEVDITPGNWKRIVLGAILLASKVWDDQAV-WNVDYCQILKD--- 240 (377)
Q Consensus 167 ~I~~FV~~L~~~a~ls~ec~IvaL--VYieRL~~~~~i~i~p~nw~RL~L~ALlLAsK~~dD~~~-~N~~~a~i~~g--- 240 (377)
.|.+|+.. =+..+++.- .++|+ +|+.|. |+.....|--. |+.||-||+-+=+|... +..-|.-..|-
T Consensus 14 ~I~~FL~~-D~~~~~sDK-YLLAmV~~YF~Ra----gl~~~~Y~ri~-FFlALYLAndmEED~~~~K~~If~f~~G~~w~ 86 (131)
T PF11357_consen 14 VIQKFLAW-DKCLRVSDK-YLLAMVIAYFSRA----GLFSWQYQRIH-FFLALYLANDMEEDDEEPKYEIFPFLYGKNWR 86 (131)
T ss_pred HHHHHHHh-CcchhhhhH-HHHHHHHHHHHhc----ccchhhcchHH-HHHHHHHhhHHHhccchHHHHHHHHHHCcchH
Confidence 46666653 112234433 33333 577664 44444444444 45679999999988763 22222222221
Q ss_pred CCHHHHHHHHHHHHHhcCCceeeCHHHHHH
Q psy16565 241 ISVEDMNELERQFLEMLQFNINVPSSVYAK 270 (377)
Q Consensus 241 isl~elN~LEr~FL~lL~fnL~Vs~s~y~k 270 (377)
-......++-.+|...++|+..|+.++-.+
T Consensus 87 ~~~~~F~klr~~~~~~m~~Ra~Vsre~cEE 116 (131)
T PF11357_consen 87 SQIPQFHKLRDQFWRRMDWRAWVSREECEE 116 (131)
T ss_pred HHhHHHHHHHHHHHHHcCCceeeCHHHHHH
Confidence 224567888899999999999999987654
Done!