Query psy16565
Match_columns 377
No_of_seqs 274 out of 777
Neff 5.3
Searched_HMMs 29240
Date Fri Aug 16 16:18:01 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16565.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/16565hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2pmi_B PHO85 cyclin PHO80, ami 100.0 7E-33 2.4E-37 268.2 12.3 165 91-277 21-186 (293)
2 3g33_B CCND3 protein; Ser/Thr 98.3 2.1E-06 7E-11 83.3 9.9 104 166-271 72-177 (306)
3 2f2c_A Cyclin homolog, V-cycli 98.3 2.6E-06 8.9E-11 79.9 10.2 104 167-272 54-159 (254)
4 1f5q_B Gamma herpesvirus cycli 98.3 2E-06 6.8E-11 81.4 9.1 105 166-272 50-156 (252)
5 1w98_B Cyclin E, G1/S-specific 98.2 7.1E-06 2.4E-10 78.4 11.8 106 167-273 52-159 (283)
6 1g3n_C V-cyclin; cyclin-depend 98.2 3.2E-06 1.1E-10 79.4 9.2 104 167-272 53-158 (257)
7 2w96_A G1/S-specific cyclin-D1 98.2 4.7E-06 1.6E-10 78.8 10.2 104 166-271 58-163 (271)
8 2b9r_A Human cyclin B1; cell c 98.2 5E-06 1.7E-10 78.7 10.4 102 167-270 40-143 (269)
9 2cch_B Cyclin A2, cyclin-A; co 98.2 3.9E-06 1.3E-10 78.9 9.0 97 166-264 40-137 (260)
10 1zp2_A RNA polymerase II holoe 97.7 0.00013 4.5E-09 67.4 10.3 101 165-268 28-137 (235)
11 2i53_A Cyclin K; cell cycle, t 97.6 9.6E-05 3.3E-09 68.8 7.7 95 167-264 43-149 (258)
12 3rgf_B Cyclin-C; protein kinas 97.5 0.00025 8.7E-09 67.6 9.0 95 168-264 46-155 (285)
13 2ivx_A Cyclin-T2; transcriptio 97.5 0.00042 1.4E-08 64.6 10.2 100 167-269 33-150 (257)
14 2pk2_A Cyclin-T1, protein TAT; 97.3 0.00017 5.9E-09 71.3 4.9 95 167-264 40-151 (358)
15 1jkw_A Cyclin H; cell cycle, c 97.2 0.0014 4.7E-08 63.8 10.2 93 169-264 61-161 (323)
16 1c9b_A General transcription f 96.8 0.0086 2.9E-07 53.9 10.6 95 166-264 6-100 (207)
17 1ais_B TFB TFIIB, protein (tra 95.1 0.12 4.2E-06 45.9 10.2 96 164-263 8-103 (200)
18 3k7a_M Transcription initiatio 81.3 2.7 9.3E-05 40.8 6.8 91 164-258 125-215 (345)
19 2ivx_A Cyclin-T2; transcriptio 74.8 23 0.00078 32.2 10.8 89 168-257 146-238 (257)
20 2pk2_A Cyclin-T1, protein TAT; 70.6 11 0.00037 36.8 7.9 89 169-258 154-246 (358)
21 2i53_A Cyclin K; cell cycle, t 69.4 32 0.0011 31.2 10.3 90 168-259 151-251 (258)
22 1c9b_A General transcription f 66.8 20 0.0007 31.5 8.2 85 168-256 102-186 (207)
23 1ais_B TFB TFIIB, protein (tra 64.5 21 0.00073 31.1 7.8 90 168-261 108-197 (200)
24 3rgf_B Cyclin-C; protein kinas 55.0 26 0.0009 32.7 7.1 84 169-258 158-241 (285)
25 1zp2_A RNA polymerase II holoe 50.6 22 0.00076 32.0 5.6 84 169-258 135-219 (235)
26 4bbr_M Transcription initiatio 43.0 1.1E+02 0.0039 29.4 9.7 93 164-260 125-217 (345)
27 2b9r_A Human cyclin B1; cell c 32.3 65 0.0022 29.6 5.8 84 167-254 137-220 (269)
28 3g33_B CCND3 protein; Ser/Thr 31.5 56 0.0019 30.9 5.3 88 168-257 171-265 (306)
29 2cch_B Cyclin A2, cyclin-A; co 24.1 1.5E+02 0.005 26.9 6.6 86 167-255 138-224 (260)
No 1
>2pmi_B PHO85 cyclin PHO80, aminoglycoside anti; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_B*
Probab=99.98 E-value=7e-33 Score=268.16 Aligned_cols=165 Identities=18% Similarity=0.219 Sum_probs=142.0
Q ss_pred CCCCccCCCcceeeeeCCccCCccchhHHHHHHHHHHHHhhcCCCcccccccccCCCCCCCCCCCCCCccCCCChhhHHH
Q psy16565 91 NRPLKKSSSCSTIYLDDSTVSQPNLKNTVKCSALAIYYYIKNGNSYKYLEIFDEKLHPLTRDPVPEDYDRYPPEHRQIYK 170 (377)
Q Consensus 91 ~~~~~k~sScStIflddsTvSqPnl~~tIkcvalaiyy~Ik~r~~~~~l~IFdE~~hPLt~~~vp~~y~~~~P~~~~I~~ 170 (377)
-.++++|+.|+. ..+|..||.++..+|+.++....- . -........|+...+|.++|++
T Consensus 21 ~~lp~~f~~~~~-------------~dlv~~IA~~L~~LI~~Nd~~~~~-----~---~~~~~~~t~F~~~~~P~ISI~~ 79 (293)
T 2pmi_B 21 VILPADFNKCSR-------------TDLVVLISRMLVSLIAINENSATK-----K---SDDQITLTRYHSKIPPNISIFN 79 (293)
T ss_dssp CBCCSSGGGSCH-------------HHHHHHHHHHHHHHHHHHHCC----------------CCCCTTCCSSCCSSCHHH
T ss_pred ccCCHHHhcCCH-------------HHHHHHHHHHHHHHHHcCcccccc-----c---cccccccccccCCCCCCCcHHH
Confidence 357777777765 579999999999999987653210 0 0001123468889999999999
Q ss_pred HHHHHHHHcCCChHHHHHHHHHHHHHhc-cCCCccCCcchHHHHHHHHHhhhhhcccCCCcccccccccCCCCHHHHHHH
Q psy16565 171 FIRTLFNAAQLTAECAIITLVYLERLLT-YAEVDITPGNWKRIVLGAILLASKVWDDQAVWNVDYCQILKDISVEDMNEL 249 (377)
Q Consensus 171 FV~~L~~~a~ls~ec~IvaLVYieRL~~-~~~i~i~p~nw~RL~L~ALlLAsK~~dD~~~~N~~~a~i~~gisl~elN~L 249 (377)
||.+|+++++|+.+|+|+|||||+||.. .+++.+++.|||||||+|||||+|||||.+++|+.|+++ ||++++|||.|
T Consensus 80 Yl~RI~k~t~ls~~~ll~ALvYLdRL~~~~p~~~l~~~nvHRLlLtALmlAsK~ldD~~ysN~~wAkV-gGisl~ELN~L 158 (293)
T 2pmi_B 80 YFIRLTKFSSLEHCVLMTSLYYIDLLQTVYPDFTLNSLTAHRFLLTATTVATKGLCDSFSTNAHYAKV-GGVRCHELNIL 158 (293)
T ss_dssp HHHHHHHTTTCCHHHHHHHHHHHHHHHHHCTTCCCSTTTHHHHHHHHHHHHHHHHCSSCCCHHHHHHH-HTSCHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHhhCCCCccCCchHHHHHHHHHHHHHHhccccccChhHhhhc-cCcCHHHHHHH
Confidence 9999999999999999999999999999 478999999999999999999999999999999999986 89999999999
Q ss_pred HHHHHHhcCCceeeCHHHHHHHHHHHHH
Q psy16565 250 ERQFLEMLQFNINVPSSVYAKYYFDLRS 277 (377)
Q Consensus 250 Er~FL~lL~fnL~Vs~s~y~kYyf~Lrs 277 (377)
|++||.+|+|+|+|+.++|++|||+++.
T Consensus 159 E~eFL~lLdf~L~V~~ee~~~cy~E~~~ 186 (293)
T 2pmi_B 159 ENDFLKRVNYRIIPRDHNITLCSIEQKQ 186 (293)
T ss_dssp HHHHHHTTTTCCSCCTTHHHHHHHHSCC
T ss_pred HHHHHHHcCCceeeCHHHHHHHHHHHhh
Confidence 9999999999999999999999997743
No 2
>3g33_B CCND3 protein; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens}
Probab=98.30 E-value=2.1e-06 Score=83.25 Aligned_cols=104 Identities=14% Similarity=0.260 Sum_probs=87.0
Q ss_pred hhHHHHHHHHHHHcCCChHHHHHHHHHHHHHhccCCCccCCcchHHHHHHHHHhhhhhcccCCCcccccccccCC-CCHH
Q psy16565 166 RQIYKFIRTLFNAAQLTAECAIITLVYLERLLTYAEVDITPGNWKRIVLGAILLASKVWDDQAVWNVDYCQILKD-ISVE 244 (377)
Q Consensus 166 ~~I~~FV~~L~~~a~ls~ec~IvaLVYieRL~~~~~i~i~p~nw~RL~L~ALlLAsK~~dD~~~~N~~~a~i~~g-isl~ 244 (377)
..+-+|+..+-...+++.+++-+|..|++|++.... +......-+-++||.||+|+-+-....-.+++.+..+ ++.+
T Consensus 72 ~~lvdwl~ev~~~~~l~~~t~~lAv~~lDRfls~~~--v~~~~lqLv~~tcL~lAsK~eE~~p~~~~~l~~~~~~~~~~~ 149 (306)
T 3g33_B 72 KMLAYWMLEVCEEQRCEEEVFPLAMNYLDRYLSCVP--TRKAQLQLLGAVCMLLASKLRETTPLTIEKLCIYTDHAVSPR 149 (306)
T ss_dssp HHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHHCC--CCGGGHHHHHHHHHHHHHHHHCSSCCCTTHHHHHTTTSSCHH
T ss_pred HHHHHHHHHHHHHhCCcHhHHHHHHHHHHHHHhcCC--CcHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHhccCccHH
Confidence 457889999999999999999999999999998754 4567788899999999999988766666677776554 9999
Q ss_pred HHHHHHHHHHHhcCCceeeC-HHHHHHH
Q psy16565 245 DMNELERQFLEMLQFNINVP-SSVYAKY 271 (377)
Q Consensus 245 elN~LEr~FL~lL~fnL~Vs-~s~y~kY 271 (377)
++-+||+..|..|+|+|.++ +-.|..+
T Consensus 150 ~i~~mE~~IL~~L~f~l~~~tp~~fl~~ 177 (306)
T 3g33_B 150 QLRDWEVLVLGKLKWDLAAVIAHDFLAF 177 (306)
T ss_dssp HHHHHHHHHHHHTTTCCCCCCGGGGHHH
T ss_pred HHHHHHHHHHHHcCCccCCCCHHHHHHH
Confidence 99999999999999999874 3334333
No 3
>2f2c_A Cyclin homolog, V-cyclin; small molecule inhibitor bound between N-terminal and C-TERM domain of kinase, cell cycle-transferase complex; HET: AP9; 2.80A {Herpesvirus saimiri} SCOP: a.74.1.1 a.74.1.1 PDB: 1jow_A* 2euf_A* 1xo2_A* 1bu2_A
Probab=98.29 E-value=2.6e-06 Score=79.87 Aligned_cols=104 Identities=14% Similarity=0.207 Sum_probs=85.9
Q ss_pred hHHHHHHHHHHHcCCChHHHHHHHHHHHHHhccCCCccCCcchHHHHHHHHHhhhhhcccCCCcccccccccCC-CCHHH
Q psy16565 167 QIYKFIRTLFNAAQLTAECAIITLVYLERLLTYAEVDITPGNWKRIVLGAILLASKVWDDQAVWNVDYCQILKD-ISVED 245 (377)
Q Consensus 167 ~I~~FV~~L~~~a~ls~ec~IvaLVYieRL~~~~~i~i~p~nw~RL~L~ALlLAsK~~dD~~~~N~~~a~i~~g-isl~e 245 (377)
.+-+|+..+...-++..+++-+|..|+||++.... +...+..-+-++|+.+|+|+-+-....-.+++.+.++ ++.+|
T Consensus 54 ~lvdwl~~v~~~~~l~~etl~lAv~~~DRfls~~~--v~~~~lqLv~~acl~iA~K~eE~~~p~~~d~~~~~~~~~~~~~ 131 (254)
T 2f2c_A 54 ILLTWMHLLCESFELDKSVFPLSVSILDRYLCKKQ--GTKKTLQKIGAACVLIGSKIRTVKPMTVSKLTYLSCDCFTNLE 131 (254)
T ss_dssp HHHHHHHHHHHHTTCCTTHHHHHHHHHHHHTTTSC--CCTTTHHHHHHHHHHHHHHHHCSSCCCHHHHSTTC---CCHHH
T ss_pred HHHHHHHHHHHHHCCCchHHHHHHHHHHHHHccCC--cCHHHccHHHHHHHHHHHHhcccCCCCHHHHHHHhCCCCCHHH
Confidence 46899999999999999999999999999998654 4566788899999999999988766666678776544 99999
Q ss_pred HHHHHHHHHHhcCCceeeC-HHHHHHHH
Q psy16565 246 MNELERQFLEMLQFNINVP-SSVYAKYY 272 (377)
Q Consensus 246 lN~LEr~FL~lL~fnL~Vs-~s~y~kYy 272 (377)
+-+||+..|..|+|++.++ +..|..+|
T Consensus 132 i~~mE~~IL~~L~~~l~~~tp~~fl~~~ 159 (254)
T 2f2c_A 132 LINQEKDILEALKWDTEAVLATDFLIPL 159 (254)
T ss_dssp HHHHHHHHHHHTTTCCCCCCGGGSHHHH
T ss_pred HHHHHHHHHHHCCCcCCCCCHHHHHHHH
Confidence 9999999999999999864 44444433
No 4
>1f5q_B Gamma herpesvirus cyclin; herpesviral cyclin, cyclin dependent kinase. protein/protein complex, transferase; 2.50A {Murid herpesvirus 4} SCOP: a.74.1.1 a.74.1.1
Probab=98.28 E-value=2e-06 Score=81.38 Aligned_cols=105 Identities=12% Similarity=0.170 Sum_probs=87.1
Q ss_pred hhHHHHHHHHHHHcCCChHHHHHHHHHHHHHhccCCCccCCcchHHHHHHHHHhhhhhcccCCCcccccccccCC-CCHH
Q psy16565 166 RQIYKFIRTLFNAAQLTAECAIITLVYLERLLTYAEVDITPGNWKRIVLGAILLASKVWDDQAVWNVDYCQILKD-ISVE 244 (377)
Q Consensus 166 ~~I~~FV~~L~~~a~ls~ec~IvaLVYieRL~~~~~i~i~p~nw~RL~L~ALlLAsK~~dD~~~~N~~~a~i~~g-isl~ 244 (377)
..+-+|+..+....++..+++-+|..|+||++....+ ......-+-++|+.||+|+-+-....-.+++.+..+ ++.+
T Consensus 50 ~~lvdWl~ev~~~~~l~~eT~~lAv~~lDRfLs~~~v--~~~~lqLvg~tcl~iAsK~eE~~p~~~~~l~~~~~~~yt~~ 127 (252)
T 1f5q_B 50 KVLTTWMFCVCKDLRQDNNVFPLAVALLDELFLSTRI--DRENYQSTAAVALHIAGKVRAYMPIKATQLAYLCGGATTAD 127 (252)
T ss_dssp HHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHHSCC--CGGGHHHHHHHHHHHHHHHHCSSCCCHHHHHHHHCTTCCHH
T ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhcCCCc--CHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHhCCCCCHH
Confidence 3478899999999999999999999999999987543 456678888999999999988766565667665544 9999
Q ss_pred HHHHHHHHHHHhcCCceee-CHHHHHHHH
Q psy16565 245 DMNELERQFLEMLQFNINV-PSSVYAKYY 272 (377)
Q Consensus 245 elN~LEr~FL~lL~fnL~V-s~s~y~kYy 272 (377)
|+-+||+..|..|+|+|.+ ++-.|..+|
T Consensus 128 ~i~~mE~~IL~~L~w~l~~pTp~~FL~~~ 156 (252)
T 1f5q_B 128 KLLTLEVKSLDTLSWVADRCLSTDLICYI 156 (252)
T ss_dssp HHHHHHHHHHHHTTTCCCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCccCCCCHHHHHHHH
Confidence 9999999999999999986 455555544
No 5
>1w98_B Cyclin E, G1/S-specific cyclin E1; cell cycle, transferase; HET: TPO; 2.15A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1
Probab=98.23 E-value=7.1e-06 Score=78.42 Aligned_cols=106 Identities=10% Similarity=0.218 Sum_probs=88.2
Q ss_pred hHHHHHHHHHHHcCCChHHHHHHHHHHHHHhccCCCccCCcchHHHHHHHHHhhhhhcccCCCcccccccccCC-CCHHH
Q psy16565 167 QIYKFIRTLFNAAQLTAECAIITLVYLERLLTYAEVDITPGNWKRIVLGAILLASKVWDDQAVWNVDYCQILKD-ISVED 245 (377)
Q Consensus 167 ~I~~FV~~L~~~a~ls~ec~IvaLVYieRL~~~~~i~i~p~nw~RL~L~ALlLAsK~~dD~~~~N~~~a~i~~g-isl~e 245 (377)
.+.+|+..+....++..+++-+|..|+||++.... .+...+..-+-++||.+|+|+-+-....-.+++.+..| ++.+|
T Consensus 52 ~lv~wl~~v~~~~~l~~~tl~lAv~~lDRfls~~~-~v~~~~lqlv~~acL~iA~K~eE~~~p~l~~~~~i~~~~~~~~e 130 (283)
T 1w98_B 52 ILLDWLMEVCEVYKLHRETFYLAQDFFDRYMATQE-NVVKTLLQLIGISSLFIAAKLEEIYPPKLHQFAYVTDGACSGDE 130 (283)
T ss_dssp HHHHHHHHHHHHTTCBHHHHHHHHHHHHHHHHHCC-CCCGGGHHHHHHHHHHHHHHHHCSSCCCHHHHHHTTTTSSCHHH
T ss_pred HHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHhCC-CCCHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHcCCCCHHH
Confidence 46799999999999999999999999999998621 23467788899999999999988766666678776554 99999
Q ss_pred HHHHHHHHHHhcCCceee-CHHHHHHHHH
Q psy16565 246 MNELERQFLEMLQFNINV-PSSVYAKYYF 273 (377)
Q Consensus 246 lN~LEr~FL~lL~fnL~V-s~s~y~kYyf 273 (377)
+-+||+..|..|+|+|.+ ++..|..+|.
T Consensus 131 i~~mE~~IL~~L~~~l~~~tp~~fL~~f~ 159 (283)
T 1w98_B 131 ILTMELMIMKALKWRLSPLTIVSWLNVYM 159 (283)
T ss_dssp HHHHHHHHHHHTTTCCCCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCcCCCCCHHHHHHHHH
Confidence 999999999999999986 4555665554
No 6
>1g3n_C V-cyclin; cyclin-dependent kinase, INK4 inhibitor, viral cyclin, cell cycle, signaling protein; 2.90A {Human herpesvirus 8} SCOP: a.74.1.1 a.74.1.1
Probab=98.23 E-value=3.2e-06 Score=79.35 Aligned_cols=104 Identities=16% Similarity=0.308 Sum_probs=86.3
Q ss_pred hHHHHHHHHHHHcCCChHHHHHHHHHHHHHhccCCCccCCcchHHHHHHHHHhhhhhcccCCCcccccccccCC-CCHHH
Q psy16565 167 QIYKFIRTLFNAAQLTAECAIITLVYLERLLTYAEVDITPGNWKRIVLGAILLASKVWDDQAVWNVDYCQILKD-ISVED 245 (377)
Q Consensus 167 ~I~~FV~~L~~~a~ls~ec~IvaLVYieRL~~~~~i~i~p~nw~RL~L~ALlLAsK~~dD~~~~N~~~a~i~~g-isl~e 245 (377)
.+-+|+..+...-++..+++-+|..|++|++.... +......-+-++||.||+|+-+-....-.+++.+..+ ++.+|
T Consensus 53 ~lvdwl~ev~~~~~l~~etl~lAv~~~DRfls~~~--v~~~~lqLv~~acl~iA~K~eE~~~p~~~d~~~~~~~~~~~~~ 130 (257)
T 1g3n_C 53 LLGTWMFSVCQEYNLEPNVVALALNLLDRLLLIKQ--VSKEHFQKTGSACLLVASKLRSLTPISTSSLCYAAADSFSRQE 130 (257)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTTCC--CCHHHHHHHHHHHHHHHHHHHCSSCCCHHHHHHHTTTCSCHHH
T ss_pred HHHHHHHHHHHHhCCCccHHHHHHHHHHHHHccCC--CCHHHHHHHHHHHHHHHHHHccccCCCHHHHHHHHCCCCCHHH
Confidence 47899999999999999999999999999998643 3456678888999999999987766666677766544 99999
Q ss_pred HHHHHHHHHHhcCCceee-CHHHHHHHH
Q psy16565 246 MNELERQFLEMLQFNINV-PSSVYAKYY 272 (377)
Q Consensus 246 lN~LEr~FL~lL~fnL~V-s~s~y~kYy 272 (377)
+-+||+..|..|+|+|.+ ++..|..+|
T Consensus 131 i~~mE~~iL~~L~~~l~~~tp~~fl~~~ 158 (257)
T 1g3n_C 131 LIDQEKELLEKLAWRTEAVLATDVTSFL 158 (257)
T ss_dssp HHHHHHHHHHHTTTCCCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHCCCcCCCCCHHHHHHHH
Confidence 999999999999999986 444454444
No 7
>2w96_A G1/S-specific cyclin-D1; serine/threonine-protein kinase, chromosomal rearrangement, ATP-binding, transferase, polymorphism, cell division; 2.30A {Homo sapiens} PDB: 2w99_A 2w9f_A 2w9z_A
Probab=98.22 E-value=4.7e-06 Score=78.85 Aligned_cols=104 Identities=14% Similarity=0.276 Sum_probs=85.4
Q ss_pred hhHHHHHHHHHHHcCCChHHHHHHHHHHHHHhccCCCccCCcchHHHHHHHHHhhhhhcccCCCcccccccccCC-CCHH
Q psy16565 166 RQIYKFIRTLFNAAQLTAECAIITLVYLERLLTYAEVDITPGNWKRIVLGAILLASKVWDDQAVWNVDYCQILKD-ISVE 244 (377)
Q Consensus 166 ~~I~~FV~~L~~~a~ls~ec~IvaLVYieRL~~~~~i~i~p~nw~RL~L~ALlLAsK~~dD~~~~N~~~a~i~~g-isl~ 244 (377)
..+.+|+..+....++..+++-.|..|++|++....+ ...+..-+-++||.+|+|+-+-....-.+++.+..+ ++.+
T Consensus 58 ~~lv~wl~~v~~~~~l~~~tl~lAv~~lDRfls~~~v--~~~~lqlv~~acL~iAsK~EE~~p~~~~~~~~~~~~~~~~~ 135 (271)
T 2w96_A 58 KIVATWMLEVCEEQKCEEEVFPLAMNYLDRFLSLEPV--KKSRLQLLGATCMFVASKMKETIPLTAEKLCIYTDNSIRPE 135 (271)
T ss_dssp HHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHTTSCC--CTTTHHHHHHHHHHHHHHHHCSSCCCHHHHHHHTTTSSCHH
T ss_pred HHHHHHHHHHHHHHCCchhHHHHHHHHHHHhCCcCCc--CHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHhcCCCCHH
Confidence 3578899999999999999999999999999987543 456788899999999999988655555577765544 9999
Q ss_pred HHHHHHHHHHHhcCCceeeC-HHHHHHH
Q psy16565 245 DMNELERQFLEMLQFNINVP-SSVYAKY 271 (377)
Q Consensus 245 elN~LEr~FL~lL~fnL~Vs-~s~y~kY 271 (377)
|+-+||+..|+.|+|++.++ +..|..+
T Consensus 136 eI~~mE~~IL~~L~~~l~~~tp~~fl~~ 163 (271)
T 2w96_A 136 ELLQMELLLVNKLKWNLAAMTPHDFIEH 163 (271)
T ss_dssp HHHHHHHHHHHHTTTCCCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHCCCccCCCCHHHHHHH
Confidence 99999999999999999864 4444433
No 8
>2b9r_A Human cyclin B1; cell cycle; 2.90A {Homo sapiens} PDB: 2jgz_B*
Probab=98.22 E-value=5e-06 Score=78.75 Aligned_cols=102 Identities=14% Similarity=0.237 Sum_probs=85.8
Q ss_pred hHHHHHHHHHHHcCCChHHHHHHHHHHHHHhccCCCccCCcchHHHHHHHHHhhhhhcccCCCcccccccccCC-CCHHH
Q psy16565 167 QIYKFIRTLFNAAQLTAECAIITLVYLERLLTYAEVDITPGNWKRIVLGAILLASKVWDDQAVWNVDYCQILKD-ISVED 245 (377)
Q Consensus 167 ~I~~FV~~L~~~a~ls~ec~IvaLVYieRL~~~~~i~i~p~nw~RL~L~ALlLAsK~~dD~~~~N~~~a~i~~g-isl~e 245 (377)
.+.+|+..+....+++.+++-.|..|++|++.... +...+..-+-++||.+|+|+-+-....-.+++.+..+ ++.+|
T Consensus 40 ~lv~wl~~v~~~~~l~~~tl~lAv~~lDRfl~~~~--v~~~~lqlv~~acL~iA~K~eE~~~p~~~d~~~~~~~~~~~~e 117 (269)
T 2b9r_A 40 ILIDWLVQVQMKFRLLQETMYMTVSIIDRFMQNNS--VPKKMLQLVGVTAMFIASKYEEMYPPEIGDFAFVTDNTYTKHQ 117 (269)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTTSC--CCGGGHHHHHHHHHHHHHHHHCSSCCCHHHHHHHTCSSSCHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCC--CcHHHhhHHHHHHHHHHHhcccccCccHHHHHHHhcCCCCHHH
Confidence 47889999999999999999999999999998754 3456788899999999999987755566678776654 99999
Q ss_pred HHHHHHHHHHhcCCceeeC-HHHHHH
Q psy16565 246 MNELERQFLEMLQFNINVP-SSVYAK 270 (377)
Q Consensus 246 lN~LEr~FL~lL~fnL~Vs-~s~y~k 270 (377)
+-+||+..|+.|+|++.++ +..|..
T Consensus 118 I~~mE~~IL~~L~f~l~~~tp~~fl~ 143 (269)
T 2b9r_A 118 IRQMEMKILRALNFGLGRPLPLHFLR 143 (269)
T ss_dssp HHHHHHHHHHHTTSCCCCCCHHHHHH
T ss_pred HHHHHHHHHHHcCCccCCCCHHHHHH
Confidence 9999999999999999864 444433
No 9
>2cch_B Cyclin A2, cyclin-A; complex(transferase/cell division), ATP-binding, CDK2, cell cycle, cyclin, mitosis, nuclear protein; HET: TPO ATP; 1.7A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1fvv_B* 1jsu_B* 1okv_B 1okw_B* 1ol1_B* 1ol2_B* 1urc_B 1fin_B* 2c5p_B* 2c5o_B* 2i40_B* 2wev_B* 2wfy_B 2whb_B* 3eid_B* 3ej1_B* 3eoc_B* 2wha_B* 2x1n_B* 1vyw_B* ...
Probab=98.19 E-value=3.9e-06 Score=78.90 Aligned_cols=97 Identities=21% Similarity=0.318 Sum_probs=83.4
Q ss_pred hhHHHHHHHHHHHcCCChHHHHHHHHHHHHHhccCCCccCCcchHHHHHHHHHhhhhhcccCCCcccccccccCC-CCHH
Q psy16565 166 RQIYKFIRTLFNAAQLTAECAIITLVYLERLLTYAEVDITPGNWKRIVLGAILLASKVWDDQAVWNVDYCQILKD-ISVE 244 (377)
Q Consensus 166 ~~I~~FV~~L~~~a~ls~ec~IvaLVYieRL~~~~~i~i~p~nw~RL~L~ALlLAsK~~dD~~~~N~~~a~i~~g-isl~ 244 (377)
..+-+|+..+...-+++.+++-+|..|++|++....+ ...+..-+-++||.+|+|+-+-....-.+++.+..+ ++.+
T Consensus 40 ~~lvdwl~~v~~~~~l~~~tl~lAv~~lDRfls~~~v--~~~~lqlv~~acl~iA~K~ee~~~~~~~d~~~i~~~~~~~~ 117 (260)
T 2cch_B 40 AILVDWLVEVGEEYKLQNETLHLAVNYIDRFLSSMSV--LRGKLQLVGTAAMLLASKFEEIYPPEVAEFVYITDDTYTKK 117 (260)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCCC--CHHHHHHHHHHHHHHHHHHHCSSCCCHHHHHHHTTSSSCHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhccCCC--CHHHHhHHHHHHHHHHHHhcccCCCCHHHHHHHHcCCcCHH
Confidence 3477999999999999999999999999999997544 455678888999999999988756666678776554 9999
Q ss_pred HHHHHHHHHHHhcCCceeeC
Q psy16565 245 DMNELERQFLEMLQFNINVP 264 (377)
Q Consensus 245 elN~LEr~FL~lL~fnL~Vs 264 (377)
|+-+||+..|..|+|++.++
T Consensus 118 ~i~~mE~~iL~~L~~~l~~~ 137 (260)
T 2cch_B 118 QVLRMEHLVLKVLTFDLAAP 137 (260)
T ss_dssp HHHHHHHHHHHHTTTCCCCC
T ss_pred HHHHHHHHHHHHcCCccCCC
Confidence 99999999999999999874
No 10
>1zp2_A RNA polymerase II holoenzyme cyclin-like subunit; cyclin repeat domains, transcription-cell cycle complex; 3.00A {Schizosaccharomyces pombe}
Probab=97.75 E-value=0.00013 Score=67.36 Aligned_cols=101 Identities=18% Similarity=0.205 Sum_probs=81.6
Q ss_pred hhhHHHHHHHHHHHcCCChHHHHHHHHHHHHHhccCCCccCC-cchHHHHHHHHHhhhhhcccCCCcccccccccC----
Q psy16565 165 HRQIYKFIRTLFNAAQLTAECAIITLVYLERLLTYAEVDITP-GNWKRIVLGAILLASKVWDDQAVWNVDYCQILK---- 239 (377)
Q Consensus 165 ~~~I~~FV~~L~~~a~ls~ec~IvaLVYieRL~~~~~i~i~p-~nw~RL~L~ALlLAsK~~dD~~~~N~~~a~i~~---- 239 (377)
-....++|.++-..-+++.+++-.|.+|++|+.....+ .. .+..-+..+||.||+|+=+ ....-.+++.+..
T Consensus 28 R~~~~~~i~~v~~~l~L~~~t~~~A~~~~~Rf~~~~~~--~~~~~~~lv~~acL~lA~K~Ee-~~~~l~d~~~~~~~~~~ 104 (235)
T 1zp2_A 28 TIYQWKVVQTFGDRLRLRQRVLATAIVLLRRYMLKKNE--EKGFSLEALVATCIYLSCKVEE-CPVHIRTICNEANDLWS 104 (235)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCCS--CCCCCHHHHHHHHHHHHHHHTT-CCCCHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhccc--ccccCHHHHHHHHHHHHhcccc-CcccHHHHHHHHHHHcc
Confidence 55677899999999999999999999999999986544 34 6788899999999999876 4444446655432
Q ss_pred ---CCCHHHHHHHHHHHHHhcCCceeeC-HHHH
Q psy16565 240 ---DISVEDMNELERQFLEMLQFNINVP-SSVY 268 (377)
Q Consensus 240 ---gisl~elN~LEr~FL~lL~fnL~Vs-~s~y 268 (377)
.++.+++-+||+..|+.|+|++.|. +..|
T Consensus 105 ~~~~~~~~~I~~~E~~iL~~L~f~l~~~~P~~~ 137 (235)
T 1zp2_A 105 LKVKLSRSNISEIEFEIISVLDAFLIVHHPYTS 137 (235)
T ss_dssp CSSCCCHHHHHHHHHHHHHHTTTCCCCCCTHHH
T ss_pred chhhccHHHHHHHHHHHHHHCCCcEEecChHHH
Confidence 4789999999999999999999874 4344
No 11
>2i53_A Cyclin K; cell cycle, transcription, cyclin BOX, CDK9, positive transcription elongation factor, P-TEFB; 1.50A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1
Probab=97.64 E-value=9.6e-05 Score=68.84 Aligned_cols=95 Identities=19% Similarity=0.219 Sum_probs=75.3
Q ss_pred hHHHHHHHHHHHcCCChHHHHHHHHHHHHHhccCCCccCCcchHHHHHHHHHhhhhhcccCCCcccccccc---------
Q psy16565 167 QIYKFIRTLFNAAQLTAECAIITLVYLERLLTYAEVDITPGNWKRIVLGAILLASKVWDDQAVWNVDYCQI--------- 237 (377)
Q Consensus 167 ~I~~FV~~L~~~a~ls~ec~IvaLVYieRL~~~~~i~i~p~nw~RL~L~ALlLAsK~~dD~~~~N~~~a~i--------- 237 (377)
...+|+..+-..-+++.+++-.|.+|++|+.....+ ...+.+-+-.+||.||+|+-+ ....-.++...
T Consensus 43 ~~~~~i~~v~~~l~l~~~t~~~A~~~~dRf~~~~~~--~~~~~qlv~~acL~lA~K~eE-~~~~l~d~~~~~~~~~~~~~ 119 (258)
T 2i53_A 43 EGARFIFDVGTRLGLHYDTLATGIIYFHRFYMFHSF--KQFPRYVTGACCLFLAGKVEE-TPKKCKDIIKTARSLLNDVQ 119 (258)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTTSCT--TTSCHHHHHHHHHHHHHHHTT-CCCCHHHHHHHHHHHSCHHH
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCh--hhcCHHHHHHHHHHHHHcccc-ccccHHHHHHHHHHHhchhh
Confidence 356889999999999999999999999999986543 456778888999999999876 34333344321
Q ss_pred ---cCCCCHHHHHHHHHHHHHhcCCceeeC
Q psy16565 238 ---LKDISVEDMNELERQFLEMLQFNINVP 264 (377)
Q Consensus 238 ---~~gisl~elN~LEr~FL~lL~fnL~Vs 264 (377)
++.-+.+++-+||+..|+.|+|++.++
T Consensus 120 ~~~~~~~~~~~i~~~E~~iL~~L~f~l~~~ 149 (258)
T 2i53_A 120 FGQFGDDPKEEVMVLERILLQTIKFDLQVE 149 (258)
T ss_dssp HGGGCSCHHHHHHHHHHHHHHHTTTCCCCC
T ss_pred hhhhhhhHHHHHHHHHHHHHHHCCCceecc
Confidence 122357899999999999999999975
No 12
>3rgf_B Cyclin-C; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens}
Probab=97.52 E-value=0.00025 Score=67.65 Aligned_cols=95 Identities=19% Similarity=0.159 Sum_probs=75.9
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHhccCCCccCCcchHHHHHHHHHhhhhhcccCCCccccccccc---------
Q psy16565 168 IYKFIRTLFNAAQLTAECAIITLVYLERLLTYAEVDITPGNWKRIVLGAILLASKVWDDQAVWNVDYCQIL--------- 238 (377)
Q Consensus 168 I~~FV~~L~~~a~ls~ec~IvaLVYieRL~~~~~i~i~p~nw~RL~L~ALlLAsK~~dD~~~~N~~~a~i~--------- 238 (377)
..+||..+-..-++..+++-.|.+|++|+.....+ ...+..-+..+||.||+|+-+-....-.++..++
T Consensus 46 ~~~~I~~v~~~l~L~~~t~~tA~~~~~RF~~~~s~--~~~~~~lva~acLfLA~K~EE~~~~~~~di~~~~~~~~k~~~~ 123 (285)
T 3rgf_B 46 FTNVIQALGEHLKLRQQVIATATVYFKRFYARYSL--KSIDPVLMAPTCVFLASKVEEFGVVSNTRLIAAATSVLKTRFS 123 (285)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHSCT--TTSCHHHHHHHHHHHHHHHTTSCCCCHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhCCc--hhcCHHHHHHHHHHHHHhhhccccccHHHHHHHHHHHHccccc
Confidence 57889999999999999999999999999986544 4667888999999999998665443322332211
Q ss_pred ---C---CCCHHHHHHHHHHHHHhcCCceeeC
Q psy16565 239 ---K---DISVEDMNELERQFLEMLQFNINVP 264 (377)
Q Consensus 239 ---~---gisl~elN~LEr~FL~lL~fnL~Vs 264 (377)
+ ..+.+++-+||+..|+.|+|++.|.
T Consensus 124 ~~~~~~~~~~~~~Il~~E~~iL~~L~f~l~v~ 155 (285)
T 3rgf_B 124 YAFPKEFPYRMNHILECEFYLLELMDCCLIVY 155 (285)
T ss_dssp TTCCSCCCCCHHHHHHHHHHHHHHTTTCCCCC
T ss_pred ccCchhhHHHHHHHHHHHHHHHHHcCCCeEeC
Confidence 1 1578999999999999999999874
No 13
>2ivx_A Cyclin-T2; transcription regulation, cell division, phosphorylation, NU protein, cell cycle, transcription; 1.8A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_A 3mi9_B* 3mia_B* 3tnh_B* 3tni_B* 3blh_B* 3blq_B* 3blr_B* 3lq5_B* 3my1_B* 3tn8_B*
Probab=97.51 E-value=0.00042 Score=64.62 Aligned_cols=100 Identities=20% Similarity=0.182 Sum_probs=77.8
Q ss_pred hHHHHHHHHHHHcCCChHHHHHHHHHHHHHhccCCCccCCcchHHHHHHHHHhhhhhcccCCCccccccccc--------
Q psy16565 167 QIYKFIRTLFNAAQLTAECAIITLVYLERLLTYAEVDITPGNWKRIVLGAILLASKVWDDQAVWNVDYCQIL-------- 238 (377)
Q Consensus 167 ~I~~FV~~L~~~a~ls~ec~IvaLVYieRL~~~~~i~i~p~nw~RL~L~ALlLAsK~~dD~~~~N~~~a~i~-------- 238 (377)
...+|+..+-..-+++.+++-.|.+|++|+.....+ ...+..-+-.+||.||+|+-+- ...-.++..+.
T Consensus 33 ~~~~~i~~v~~~l~l~~~t~~~A~~~~dRf~~~~~~--~~~~~qlv~~acL~lA~K~EE~-p~~l~d~~~~~~~~~~~~~ 109 (257)
T 2ivx_A 33 QAANLIQEMGQRLNVSQLTINTAIVYMHRFYMHHSF--TKFNKNIISSTALFLAAKVEEQ-ARKLEHVIKVAHACLHPLE 109 (257)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTTSCT--TTSCHHHHHHHHHHHHHHHTTC-CCCHHHHHHHHHHHHCTTS
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhhCCh--hhhCHHHHHHHHHHHHhccccC-CcCHHHHHHHHHHHhccCC
Confidence 367889999999999999999999999999986543 4667888999999999999775 44333454321
Q ss_pred ------C-CCC--HHHHHHHHHHHHHhcCCceeeC-HHHHH
Q psy16565 239 ------K-DIS--VEDMNELERQFLEMLQFNINVP-SSVYA 269 (377)
Q Consensus 239 ------~-gis--l~elN~LEr~FL~lL~fnL~Vs-~s~y~ 269 (377)
+ .++ .+++-.||+..|+.|+|++.|+ +..|.
T Consensus 110 ~~~~~~~~~y~~~~~~I~~~E~~iL~~L~f~l~~~~P~~fl 150 (257)
T 2ivx_A 110 PLLDTKCDAYLQQTRELVILETIMLQTLGFEITIEHPHTDV 150 (257)
T ss_dssp CCCCTTSHHHHHHHHHHHHHHHHHHHHTTTCCCCCCHHHHH
T ss_pred CCCCcchHHHHHHHHHHHHHHHHHHHHcccceEeeCcHHHH
Confidence 0 122 7899999999999999999875 43443
No 14
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C
Probab=97.30 E-value=0.00017 Score=71.34 Aligned_cols=95 Identities=19% Similarity=0.249 Sum_probs=74.8
Q ss_pred hHHHHHHHHHHHcCCChHHHHHHHHHHHHHhccCCCccCCcchHHHHHHHHHhhhhhcccCCCcccccccccC-------
Q psy16565 167 QIYKFIRTLFNAAQLTAECAIITLVYLERLLTYAEVDITPGNWKRIVLGAILLASKVWDDQAVWNVDYCQILK------- 239 (377)
Q Consensus 167 ~I~~FV~~L~~~a~ls~ec~IvaLVYieRL~~~~~i~i~p~nw~RL~L~ALlLAsK~~dD~~~~N~~~a~i~~------- 239 (377)
...+||..+-..-++..+++-.|.+|++|+..... +...+..-+.++||.||+|+-+. ...-.++..+..
T Consensus 40 ~~v~wI~ev~~~l~L~~~t~~tAv~~~dRFl~~~s--v~~~~~qlva~acLfLA~K~EE~-p~~l~d~v~v~~~~~~~~~ 116 (358)
T 2pk2_A 40 QAANLLQDMGQRLNVSQLTINTAIVYMHRFYMIQS--FTRFPGNSVAPAALFLAAKVEEQ-PKKLEHVIKVAHTCLHPQE 116 (358)
T ss_dssp HHHHHHHHHHTTTTCCHHHHHHHHHHHHHHTTTSC--TTTSCHHHHHHHHHHHHHHHTTC-CCCHHHHHTTHHHHHCSSS
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCC--cccccHHHHHHHHHHHHHhhccC-CCCHHHHHHHHHHHhcccc
Confidence 36788999999999999999999999999998654 34677889999999999999776 333334432210
Q ss_pred ---C-----C--CHHHHHHHHHHHHHhcCCceeeC
Q psy16565 240 ---D-----I--SVEDMNELERQFLEMLQFNINVP 264 (377)
Q Consensus 240 ---g-----i--sl~elN~LEr~FL~lL~fnL~Vs 264 (377)
+ + ..++|-+||+.+|+.|+|+|.|+
T Consensus 117 ~~~~~~~~~y~~~~~~Il~~E~~IL~~L~f~L~v~ 151 (358)
T 2pk2_A 117 SLPDTRSEAYLQQVQDLVILESIILQTLGFELTID 151 (358)
T ss_dssp CCCCTTSHHHHGGGTGGGTHHHHHHHHTTTCCCCC
T ss_pred ccccccchhhhHHHHHHHHHHHHHHHHcCCceeCC
Confidence 0 2 26789999999999999999874
No 15
>1jkw_A Cyclin H; cell cycle, cell division, nuclear protein; 2.60A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1kxu_A
Probab=97.21 E-value=0.0014 Score=63.83 Aligned_cols=93 Identities=19% Similarity=0.227 Sum_probs=74.7
Q ss_pred HHHHHHHHHHcC--CChHHHHHHHHHHHHHhccCCCccCCcchHHHHHHHHHhhhhhcccCCCcccccccccCC------
Q psy16565 169 YKFIRTLFNAAQ--LTAECAIITLVYLERLLTYAEVDITPGNWKRIVLGAILLASKVWDDQAVWNVDYCQILKD------ 240 (377)
Q Consensus 169 ~~FV~~L~~~a~--ls~ec~IvaLVYieRL~~~~~i~i~p~nw~RL~L~ALlLAsK~~dD~~~~N~~~a~i~~g------ 240 (377)
.++|..+-..-+ ++.+++-.|.+|++|+.....+ ...+.+-+.++||.||+|+=+- ...-.+++.++.+
T Consensus 61 ~~~I~ev~~~l~~~Lp~~t~~tA~~~~~RF~~~~s~--~~~~~~lva~acLfLA~K~EE~-~~~l~d~v~~~~~~p~~~~ 137 (323)
T 1jkw_A 61 EKRLLEFCSVFKPAMPRSVVGTACMYFKRFYLNNSV--MEYHPRIIMLTCAFLACKVDEF-NVSSPQFVGNLRESPLGQE 137 (323)
T ss_dssp HHHHHHHHHHCTTTCCHHHHHHHHHHHHHHGGGSCT--TTSCHHHHHHHHHHHHHHHTTC-CCCHHHHGGGSSSCHHHHH
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhCCh--hhcCHHHHHHHHHHHHHhhhcC-CCCHHHHHHHhccChhhhH
Confidence 366777888888 9999999999999999986543 4567889999999999998665 4455566654432
Q ss_pred CCHHHHHHHHHHHHHhcCCceeeC
Q psy16565 241 ISVEDMNELERQFLEMLQFNINVP 264 (377)
Q Consensus 241 isl~elN~LEr~FL~lL~fnL~Vs 264 (377)
.+.++|-.||+..|+.|+|+|.|.
T Consensus 138 ~~~~~Il~~E~~iL~~L~f~l~v~ 161 (323)
T 1jkw_A 138 KALEQILEYELLLIQQLNFHLIVH 161 (323)
T ss_dssp HHHHHHHHHHHHHHHHTTTCCCCC
T ss_pred HHHHHHHHHHHHHHHHCCCcEEcC
Confidence 236899999999999999999874
No 16
>1c9b_A General transcription factor IIB; protein-DNA complex, cyclin-like fold, helix-turn-helix, transcription/DNA complex; 2.65A {Homo sapiens} SCOP: a.74.1.2 a.74.1.2 PDB: 1tfb_A 2phg_A 1vol_A*
Probab=96.76 E-value=0.0086 Score=53.86 Aligned_cols=95 Identities=13% Similarity=0.137 Sum_probs=80.7
Q ss_pred hhHHHHHHHHHHHcCCChHHHHHHHHHHHHHhccCCCccCCcchHHHHHHHHHhhhhhcccCCCcccccccccCCCCHHH
Q psy16565 166 RQIYKFIRTLFNAAQLTAECAIITLVYLERLLTYAEVDITPGNWKRIVLGAILLASKVWDDQAVWNVDYCQILKDISVED 245 (377)
Q Consensus 166 ~~I~~FV~~L~~~a~ls~ec~IvaLVYieRL~~~~~i~i~p~nw~RL~L~ALlLAsK~~dD~~~~N~~~a~i~~gisl~e 245 (377)
..-.++|.++-..-+++..+.=.|.+|+.|+.....+ ...+..-+..+||.+|+|+-+- ...-++++.+ .+++.++
T Consensus 6 ~~a~~~I~~~~~~L~L~~~v~~~A~~~~~r~~~~~~~--~~~~~~~v~aaclylAcK~ee~-p~~l~di~~~-~~~~~~~ 81 (207)
T 1c9b_A 6 MNAFKEITTMADRINLPRNIVDRTNNLFKQVYEQKSL--KGRANDAIASACLYIACRQEGV-PRTFKEICAV-SRISKKE 81 (207)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTCS--TTSCHHHHHHHHHHHHHHHTTC-CCCHHHHHHT-SSSCHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCc--CCCCHHHHHHHHHHHHHHhcCC-CCCHHHHHHH-HCCCHHH
Confidence 4457889999999999999999999999999986433 4567888999999999998664 5677788876 4699999
Q ss_pred HHHHHHHHHHhcCCceeeC
Q psy16565 246 MNELERQFLEMLQFNINVP 264 (377)
Q Consensus 246 lN~LEr~FL~lL~fnL~Vs 264 (377)
+.++|+.+|+.|+|++.+.
T Consensus 82 i~~~~~~ll~~L~~~l~~~ 100 (207)
T 1c9b_A 82 IGRCFKLILKALETSVDLI 100 (207)
T ss_dssp HHHHHHHHHHHTTCCCCCC
T ss_pred HHHHHHHHHHHHCCCcCcC
Confidence 9999999999999999763
No 17
>1ais_B TFB TFIIB, protein (transcription initiation factor IIB); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: a.74.1.2 a.74.1.2 PDB: 1d3u_B*
Probab=95.14 E-value=0.12 Score=45.86 Aligned_cols=96 Identities=6% Similarity=0.014 Sum_probs=80.2
Q ss_pred ChhhHHHHHHHHHHHcCCChHHHHHHHHHHHHHhccCCCccCCcchHHHHHHHHHhhhhhcccCCCcccccccccCCCCH
Q psy16565 164 EHRQIYKFIRTLFNAAQLTAECAIITLVYLERLLTYAEVDITPGNWKRIVLGAILLASKVWDDQAVWNVDYCQILKDISV 243 (377)
Q Consensus 164 ~~~~I~~FV~~L~~~a~ls~ec~IvaLVYieRL~~~~~i~i~p~nw~RL~L~ALlLAsK~~dD~~~~N~~~a~i~~gisl 243 (377)
......++|.++-..-+++..+.=.|..|+.|+....- +...+..-+..+||-+|+|..+ ....-++++.+ .+++.
T Consensus 8 ~l~~a~~~I~~~~~~L~L~~~v~~~A~~l~~~~~~~~~--~~gr~~~~vaaAclylAcr~~~-~p~~l~di~~~-~~v~~ 83 (200)
T 1ais_B 8 NLAFALSELDRITAQLKLPRHVEEEAARLYREAVRKGL--IRGRSIESVMAACVYAACRLLK-VPRTLDEIADI-ARVDK 83 (200)
T ss_dssp CHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTTT--TTTCCHHHHHHHHHHHHHHHHT-CCCCHHHHHHH-TTSCH
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCC--cCCCCHHHHHHHHHHHHHHHcC-CCCCHHHHHHH-HCCCH
Confidence 45677899999999999999999999999999988632 2345677888899999999876 55666788876 57999
Q ss_pred HHHHHHHHHHHHhcCCceee
Q psy16565 244 EDMNELERQFLEMLQFNINV 263 (377)
Q Consensus 244 ~elN~LEr~FL~lL~fnL~V 263 (377)
+++..+|+.+++.|+|++.+
T Consensus 84 ~~i~~~~~~l~~~L~~~~~~ 103 (200)
T 1ais_B 84 KEIGRSYRFIARNLNLTPKK 103 (200)
T ss_dssp HHHHHHHHHHHHHTTCCTTT
T ss_pred HHHHHHHHHHHHHhcccCCc
Confidence 99999999999999999874
No 18
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae}
Probab=81.26 E-value=2.7 Score=40.84 Aligned_cols=91 Identities=12% Similarity=0.102 Sum_probs=73.7
Q ss_pred ChhhHHHHHHHHHHHcCCChHHHHHHHHHHHHHhccCCCccCCcchHHHHHHHHHhhhhhcccCCCcccccccccCCCCH
Q psy16565 164 EHRQIYKFIRTLFNAAQLTAECAIITLVYLERLLTYAEVDITPGNWKRIVLGAILLASKVWDDQAVWNVDYCQILKDISV 243 (377)
Q Consensus 164 ~~~~I~~FV~~L~~~a~ls~ec~IvaLVYieRL~~~~~i~i~p~nw~RL~L~ALlLAsK~~dD~~~~N~~~a~i~~gisl 243 (377)
.....+.+|..+-..-+++..+.=.|.+|..|+....- +...+..-+..+||.+|+|. ......-++++.+ .+++.
T Consensus 125 ~l~~a~~~I~~~~~~L~Lp~~v~d~A~~lyk~~~~~~~--~kgr~~~~vaaAclyiAcR~-e~~prtl~ei~~~-~~v~~ 200 (345)
T 3k7a_M 125 EVQAAFAKITMLCDAAELPKIVKDCAKEAYKLCHDEKT--LKGKSMESIMAASILIGCRR-AEVARTFKEIQSL-IHVKT 200 (345)
T ss_dssp THHHHHHHHHHHHHHTTCCHHHHTHHHHHHHHHSSSCS--SCCCCSHHHHTTTTTTTSBT-TBSSCCHHHHHHS-SSCCS
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCc--ccCCcHHHHHHHHHHHHHHH-cCCCccHHHHHHH-HCCCH
Confidence 46678999999999999999888888888888876532 23445677888899999995 4455666788876 47999
Q ss_pred HHHHHHHHHHHHhcC
Q psy16565 244 EDMNELERQFLEMLQ 258 (377)
Q Consensus 244 ~elN~LEr~FL~lL~ 258 (377)
+++.++++.+++.|+
T Consensus 201 keIgr~~~~l~~~L~ 215 (345)
T 3k7a_M 201 KEFGKTLNIMKNILR 215 (345)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999999998
No 19
>2ivx_A Cyclin-T2; transcription regulation, cell division, phosphorylation, NU protein, cell cycle, transcription; 1.8A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_A 3mi9_B* 3mia_B* 3tnh_B* 3tni_B* 3blh_B* 3blq_B* 3blr_B* 3lq5_B* 3my1_B* 3tn8_B*
Probab=74.81 E-value=23 Score=32.24 Aligned_cols=89 Identities=15% Similarity=0.089 Sum_probs=61.2
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHhccCCCccCCcchHHHHHHHHHhhhhhcccCCC---ccccccccc-CCCCH
Q psy16565 168 IYKFIRTLFNAAQLTAECAIITLVYLERLLTYAEVDITPGNWKRIVLGAILLASKVWDDQAV---WNVDYCQIL-KDISV 243 (377)
Q Consensus 168 I~~FV~~L~~~a~ls~ec~IvaLVYieRL~~~~~i~i~p~nw~RL~L~ALlLAsK~~dD~~~---~N~~~a~i~-~gisl 243 (377)
-++|+.++.+....+.+..-.|..+++..+....+.+ .....-|-++||.+|.+.++-.-. ....|...+ .|++.
T Consensus 146 P~~fl~~~~~~l~~~~~~~~~A~~~~~~sl~~~~~~l-~~~Ps~IAaAai~lA~~~~~~~~p~~~~~~~W~~~~~~~~~~ 224 (257)
T 2ivx_A 146 PHTDVVKCTQLVRASKDLAQTSYFMATNSLHLTTFCL-QYKPTVIACVCIHLACKWSNWEIPVSTDGKHWWEYVDPTVTL 224 (257)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCCGGG-TSCHHHHHHHHHHHHHHHHTCCCCCCTTCCCGGGGTCSSCCH
T ss_pred cHHHHHHHHHHhCCCcHHHHHHHHHHHhhhhcccHHH-cCCHHHHHHHHHHHHHHHhCCCCCCCCCCchHHHHhCCCCCH
Confidence 4788888888888888876667666666543223221 344568888999999998763211 123466543 37999
Q ss_pred HHHHHHHHHHHHhc
Q psy16565 244 EDMNELERQFLEML 257 (377)
Q Consensus 244 ~elN~LEr~FL~lL 257 (377)
+++.+.-.+++.++
T Consensus 225 ~~l~~~~~~i~~~~ 238 (257)
T 2ivx_A 225 ELLDELTHEFLQIL 238 (257)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999998764
No 20
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C
Probab=70.61 E-value=11 Score=36.84 Aligned_cols=89 Identities=13% Similarity=0.121 Sum_probs=60.5
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHhccCCCccCCcchHHHHHHHHHhhhhhcccCC---Cccccccccc-CCCCHH
Q psy16565 169 YKFIRTLFNAAQLTAECAIITLVYLERLLTYAEVDITPGNWKRIVLGAILLASKVWDDQA---VWNVDYCQIL-KDISVE 244 (377)
Q Consensus 169 ~~FV~~L~~~a~ls~ec~IvaLVYieRL~~~~~i~i~p~nw~RL~L~ALlLAsK~~dD~~---~~N~~~a~i~-~gisl~ 244 (377)
+.||.++++....+.+..-+|..+++..+....+. ......-|-++||.+|.++++-.- .....|...+ .+++.+
T Consensus 154 ~~fL~~~~~~l~~~~~l~~~A~~ll~~sl~~t~l~-l~y~Ps~IAaAAI~lA~~~l~~~~p~~~~~~~W~~~~~~~vt~~ 232 (358)
T 2pk2_A 154 HTHVVKCTQLVRASKDLAQTSYFMATNSLHLTTFS-LQYTPPVVACVCIHLACKWSNWEIPVSTDGKHWWEYVDATVTLE 232 (358)
T ss_dssp THHHHHHHHHTTCCHHHHHHHHHHHHHHTTTSCGG-GTSCHHHHTTTTTTTHHHHTTCCCCCCSSSCCTTTTSCSSCCHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcch-hccCHHHHHHHHHHHHHHHhCCCCCCCccccchHHHHhccCCHH
Confidence 56788888888888887666766666655322322 123456777888999999886321 1123566654 379999
Q ss_pred HHHHHHHHHHHhcC
Q psy16565 245 DMNELERQFLEMLQ 258 (377)
Q Consensus 245 elN~LEr~FL~lL~ 258 (377)
+|.++-.++|.+++
T Consensus 233 ~l~~i~~~il~~y~ 246 (358)
T 2pk2_A 233 LLDELTHEFLQILE 246 (358)
T ss_dssp HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999998763
No 21
>2i53_A Cyclin K; cell cycle, transcription, cyclin BOX, CDK9, positive transcription elongation factor, P-TEFB; 1.50A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1
Probab=69.38 E-value=32 Score=31.18 Aligned_cols=90 Identities=12% Similarity=0.243 Sum_probs=61.1
Q ss_pred HHHHHHHHHHHcCCCh----HHHHHHHHHHHHHhccCCCccCCcchHHHHHHHHHhhhhhcccC-CCc-----ccccccc
Q psy16565 168 IYKFIRTLFNAAQLTA----ECAIITLVYLERLLTYAEVDITPGNWKRIVLGAILLASKVWDDQ-AVW-----NVDYCQI 237 (377)
Q Consensus 168 I~~FV~~L~~~a~ls~----ec~IvaLVYieRL~~~~~i~i~p~nw~RL~L~ALlLAsK~~dD~-~~~-----N~~~a~i 237 (377)
-++|+.++.+....+. +..-.|..+++..... .. .......-|-++||.+|.+..+-. .-| ...|...
T Consensus 151 P~~fl~~~~~~l~~~~~~~~~~~~~A~~l~~~s~~~-~~-~l~~~Ps~IAaAai~lA~~~~~~~~~~~~~~~~~~~W~~~ 228 (258)
T 2i53_A 151 PYQFLLKYAKQLKGDKNKIQKLVQMAWTFVNDSLCT-TL-SLQWEPEIIAVAVMYLAGRLCKFEIQEWTSKPMYRRWWEQ 228 (258)
T ss_dssp HHHHHHHHHHTBCSCHHHHHHHHHHHHHHHHHHTTT-TG-GGTSCHHHHHHHHHHHHHHHHTCCGGGGBSSCCSSCGGGG
T ss_pred hHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHcC-Cc-hhccChHHHHHHHHHHHHHHhCCCCCccccCCCcccHHHH
Confidence 4788888888888876 3444555555555432 22 223456688999999999988642 223 2346554
Q ss_pred -cCCCCHHHHHHHHHHHHHhcCC
Q psy16565 238 -LKDISVEDMNELERQFLEMLQF 259 (377)
Q Consensus 238 -~~gisl~elN~LEr~FL~lL~f 259 (377)
..|++.+++...-.++|++.+-
T Consensus 229 ~~~~~~~~~l~~~~~~il~ly~~ 251 (258)
T 2i53_A 229 FVQDVPVDVLEDICHQILDLYSQ 251 (258)
T ss_dssp TSSSCCHHHHHHHHHHHHTTTSS
T ss_pred hccCCCHHHHHHHHHHHHHHHhc
Confidence 3689999999999999987653
No 22
>1c9b_A General transcription factor IIB; protein-DNA complex, cyclin-like fold, helix-turn-helix, transcription/DNA complex; 2.65A {Homo sapiens} SCOP: a.74.1.2 a.74.1.2 PDB: 1tfb_A 2phg_A 1vol_A*
Probab=66.79 E-value=20 Score=31.45 Aligned_cols=85 Identities=9% Similarity=0.086 Sum_probs=60.7
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHhccCCCccCCcchHHHHHHHHHhhhhhcccCCCcccccccccCCCCHHHHH
Q psy16565 168 IYKFIRTLFNAAQLTAECAIITLVYLERLLTYAEVDITPGNWKRIVLGAILLASKVWDDQAVWNVDYCQILKDISVEDMN 247 (377)
Q Consensus 168 I~~FV~~L~~~a~ls~ec~IvaLVYieRL~~~~~i~i~p~nw~RL~L~ALlLAsK~~dD~~~~N~~~a~i~~gisl~elN 247 (377)
-++|+.++.+..+++.++.-.|...+++... .++ ....+.+-|-.+||.+|++..+ ...+..+|+.+ .|++..++.
T Consensus 102 p~~~l~r~~~~l~l~~~~~~~A~~i~~~~~~-~~l-~~g~~P~~IAaAaiylA~~~~~-~~~~~~~i~~~-~~v~~~tI~ 177 (207)
T 1c9b_A 102 TGDFMSRFCSNLCLPKQVQMAATHIARKAVE-LDL-VPGRSPISVAAAAIYMASQASA-EKRTQKEIGDI-AGVADVTIR 177 (207)
T ss_dssp THHHHHHHHHHTTCCHHHHHHHHHHHHHHHH-TTC-STTCCHHHHHHHHHHHHHHTSS-SCCCHHHHHHH-HTCCHHHHH
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH-cCc-cCCCChHHHHHHHHHHHHHHHC-CCCCHHHHHHH-hCCCHHHHH
Confidence 3888888888889998876666666665554 332 2356778899999999999775 45677788875 478887777
Q ss_pred HHHHHHHHh
Q psy16565 248 ELERQFLEM 256 (377)
Q Consensus 248 ~LEr~FL~l 256 (377)
.-=+++++.
T Consensus 178 ~~~~~l~~~ 186 (207)
T 1c9b_A 178 QSYRLIYPR 186 (207)
T ss_dssp HHHHHHGGG
T ss_pred HHHHHHHHH
Confidence 665555543
No 23
>1ais_B TFB TFIIB, protein (transcription initiation factor IIB); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: a.74.1.2 a.74.1.2 PDB: 1d3u_B*
Probab=64.46 E-value=21 Score=31.09 Aligned_cols=90 Identities=9% Similarity=0.147 Sum_probs=66.2
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHhccCCCccCCcchHHHHHHHHHhhhhhcccCCCcccccccccCCCCHHHHH
Q psy16565 168 IYKFIRTLFNAAQLTAECAIITLVYLERLLTYAEVDITPGNWKRIVLGAILLASKVWDDQAVWNVDYCQILKDISVEDMN 247 (377)
Q Consensus 168 I~~FV~~L~~~a~ls~ec~IvaLVYieRL~~~~~i~i~p~nw~RL~L~ALlLAsK~~dD~~~~N~~~a~i~~gisl~elN 247 (377)
-+.||.++.+...++.++.-.|..++++.... ++ ....+..-+-.+||.+|++..+. ..|-++++.+ .|++..++.
T Consensus 108 p~~~i~r~~~~L~l~~~v~~~A~~i~~~~~~~-~~-~~gr~P~~iAaAaly~A~~~~~~-~~t~~ei~~~-~~vs~~ti~ 183 (200)
T 1ais_B 108 PTDYVNKFADELGLSEKVRRRAIEILDEAYKR-GL-TSGKSPAGLVAAALYIASLLEGE-KRTQREVAEV-ARVTEVTVR 183 (200)
T ss_dssp GGGGHHHHHHHHTCCHHHHHHHHHHHHHHHHT-TC-CTTSCHHHHHHHHHHHHHHHTTC-CCCHHHHHHH-HTCCHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHc-Cc-ccCCCHHHHHHHHHHHHHHHhCC-CCCHHHHHHH-hCCCHHHHH
Confidence 36677777777789988877777777766653 32 34567778888999999997664 4566788876 579998888
Q ss_pred HHHHHHHHhcCCce
Q psy16565 248 ELERQFLEMLQFNI 261 (377)
Q Consensus 248 ~LEr~FL~lL~fnL 261 (377)
.-=+++.+.|+.++
T Consensus 184 ~~~~~l~~~l~~~~ 197 (200)
T 1ais_B 184 NRYKELVEKLKIKV 197 (200)
T ss_dssp HHHHHHHHHHTCCC
T ss_pred HHHHHHHHHcCCCC
Confidence 88888888776543
No 24
>3rgf_B Cyclin-C; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens}
Probab=55.02 E-value=26 Score=32.70 Aligned_cols=84 Identities=13% Similarity=0.109 Sum_probs=59.3
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHhccCCCccCCcchHHHHHHHHHhhhhhcccCCCcccccccccCCCCHHHHHH
Q psy16565 169 YKFIRTLFNAAQLTAECAIITLVYLERLLTYAEVDITPGNWKRIVLGAILLASKVWDDQAVWNVDYCQILKDISVEDMNE 248 (377)
Q Consensus 169 ~~FV~~L~~~a~ls~ec~IvaLVYieRL~~~~~i~i~p~nw~RL~L~ALlLAsK~~dD~~~~N~~~a~i~~gisl~elN~ 248 (377)
++|+.++.+....+.+..-.|..+++..... ... .....+-|-++||.+|.+..+... ..|.+.+ |++.+++.+
T Consensus 158 ~~fL~~~~~~l~~~~~~~~~A~~~l~~sl~t-~~~-l~~~Ps~IAaAaiylA~~~~~~~~---~~W~~~~-~~~~~~l~~ 231 (285)
T 3rgf_B 158 YRPLLQYVQDMGQEDMLLPLAWRIVNDTYRT-DLC-LLYPPFMIALACLHVACVVQQKDA---RQWFAEL-SVDMEKILE 231 (285)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTS-SHH-HHSCHHHHHHHHHHHHHHHTTCCC---HHHHHTS-CSCHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHcc-Chh-hccCHHHHHHHHHHHHHHHcCCCh---hhHHHHH-CCCHHHHHH
Confidence 6777777777777777666666666665432 221 123456788999999999887532 4677765 799999999
Q ss_pred HHHHHHHhcC
Q psy16565 249 LERQFLEMLQ 258 (377)
Q Consensus 249 LEr~FL~lL~ 258 (377)
.-.++|++.+
T Consensus 232 ~~~~il~ly~ 241 (285)
T 3rgf_B 232 IIRVILKLYE 241 (285)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999988643
No 25
>1zp2_A RNA polymerase II holoenzyme cyclin-like subunit; cyclin repeat domains, transcription-cell cycle complex; 3.00A {Schizosaccharomyces pombe}
Probab=50.58 E-value=22 Score=31.99 Aligned_cols=84 Identities=6% Similarity=0.048 Sum_probs=55.5
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHhccCCCccCCcchHHHHHHHHHhhhhhcccCC-CcccccccccCCCCHHHHH
Q psy16565 169 YKFIRTLFNAAQLTAECAIITLVYLERLLTYAEVDITPGNWKRIVLGAILLASKVWDDQA-VWNVDYCQILKDISVEDMN 247 (377)
Q Consensus 169 ~~FV~~L~~~a~ls~ec~IvaLVYieRL~~~~~i~i~p~nw~RL~L~ALlLAsK~~dD~~-~~N~~~a~i~~gisl~elN 247 (377)
++|+.++.+...++.+..-.|..+++..... ... ......-|-++||.+|.+..+... .|. .|.+ |++.+++.
T Consensus 135 ~~~l~~~~~~~~~~~~~~~~A~~~l~~s~~~-~~~-l~~~Ps~IAaAai~lA~~~~~~~~~~~~-~~~~---~~~~~~i~ 208 (235)
T 1zp2_A 135 YTSLEQAFHDGIINQKQLEFAWSIVNDSYAS-SLC-LMAHPHQLAYAALLISCCNDENTIPKLL-DLIK---STDAFKVI 208 (235)
T ss_dssp HHHHHHHHHTTSSCHHHHHHHHHHHHHHTTT-TGG-GTSCHHHHHHHHHHHHHTSCTTHHHHHH-HHCC---HHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHcC-Cch-hccCHHHHHHHHHHHHHHhcCCCCCCCc-chhh---cCCHHHHH
Confidence 6777777777888888777777777776542 221 234556889999999999875321 122 2322 77777777
Q ss_pred HHHHHHHHhcC
Q psy16565 248 ELERQFLEMLQ 258 (377)
Q Consensus 248 ~LEr~FL~lL~ 258 (377)
..=.+++++.+
T Consensus 209 ~~~~~i~~ly~ 219 (235)
T 1zp2_A 209 LCVQRIISIYY 219 (235)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHh
Confidence 77777776543
No 26
>4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M
Probab=43.00 E-value=1.1e+02 Score=29.42 Aligned_cols=93 Identities=12% Similarity=0.073 Sum_probs=72.3
Q ss_pred ChhhHHHHHHHHHHHcCCChHHHHHHHHHHHHHhccCCCccCCcchHHHHHHHHHhhhhhcccCCCcccccccccCCCCH
Q psy16565 164 EHRQIYKFIRTLFNAAQLTAECAIITLVYLERLLTYAEVDITPGNWKRIVLGAILLASKVWDDQAVWNVDYCQILKDISV 243 (377)
Q Consensus 164 ~~~~I~~FV~~L~~~a~ls~ec~IvaLVYieRL~~~~~i~i~p~nw~RL~L~ALlLAsK~~dD~~~~N~~~a~i~~gisl 243 (377)
.....+..|.++...-+++..+.=.|..+..++.... .+...+..-+..+||.+|.+.- +....-.+++.+ .+++.
T Consensus 125 ~L~~a~~~I~~~~~~L~Lp~~v~d~A~~lyk~a~~~~--~~rGrs~e~vaAAclYiACR~~-~~prtl~eI~~~-~~v~~ 200 (345)
T 4bbr_M 125 EVQAAFAKITMLCDAAELPKIVKDCAKEAYKLCHDEK--TLKGKSMESIMAASILIGCRRA-EVARTFKEIQSL-IHVKT 200 (345)
T ss_dssp STTHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCT--TTTTCCHHHHHHHHHHHHHHHT-CCBCCHHHHHHH-HTCCT
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC--CccCCCHHHHHHHHHHHHHHhc-CCCccHHHHHHH-hCCCH
Confidence 4677899999999999999888877877777776642 2345677888899999999964 455666688876 47999
Q ss_pred HHHHHHHHHHHHhcCCc
Q psy16565 244 EDMNELERQFLEMLQFN 260 (377)
Q Consensus 244 ~elN~LEr~FL~lL~fn 260 (377)
++|....+.++..|+..
T Consensus 201 keigr~~k~l~~~L~l~ 217 (345)
T 4bbr_M 201 KEFGKTLNIMKNILRGK 217 (345)
T ss_dssp THHHHHHHHHHHCC---
T ss_pred HHHHHHHHHHHHHhCcc
Confidence 99999999999999864
No 27
>2b9r_A Human cyclin B1; cell cycle; 2.90A {Homo sapiens} PDB: 2jgz_B*
Probab=32.34 E-value=65 Score=29.63 Aligned_cols=84 Identities=15% Similarity=0.179 Sum_probs=54.1
Q ss_pred hHHHHHHHHHHHcCCChHHHHHHHHHHHHHhccCCCccCCcchHHHHHHHHHhhhhhcccCCCcccccccccCCCCHHHH
Q psy16565 167 QIYKFIRTLFNAAQLTAECAIITLVYLERLLTYAEVDITPGNWKRIVLGAILLASKVWDDQAVWNVDYCQILKDISVEDM 246 (377)
Q Consensus 167 ~I~~FV~~L~~~a~ls~ec~IvaLVYieRL~~~~~i~i~p~nw~RL~L~ALlLAsK~~dD~~~~N~~~a~i~~gisl~el 246 (377)
+-++|+.++.+...++.+..-++..+++....... .......-|-.+||.+|.+.++.. .|+...... .|++.+++
T Consensus 137 tp~~fl~~~~~~~~~~~~~~~~a~~l~e~sl~~~~--~~~~~Ps~iAaAai~lA~~~l~~~-~w~~~l~~~-tg~~~~~l 212 (269)
T 2b9r_A 137 LPLHFLRRASKIGEVDVEQHTLAKYLMELTMLDYD--MVHFPPSQIAAGAFSLALKILDNG-EWTPTLQHY-LSYTEESL 212 (269)
T ss_dssp CHHHHHHHHHHSSCCCHHHHHHHHHHHHHGGGCGG--GSSSCTTHHHHHHHHHHHHHHTCC-CSCTTHHHH-SCCCSSTT
T ss_pred CHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhh--hhcCCHHHHHHHHHHHHHHHhCCC-CCCHHHHHH-HCCCHHHH
Confidence 35789999999888888776666555655443222 223334478888899999988765 566555443 57777666
Q ss_pred HHHHHHHH
Q psy16565 247 NELERQFL 254 (377)
Q Consensus 247 N~LEr~FL 254 (377)
...=+.++
T Consensus 213 ~~~~~~l~ 220 (269)
T 2b9r_A 213 LPVMQHLA 220 (269)
T ss_dssp TTHHHHHH
T ss_pred HHHHHHHH
Confidence 55444433
No 28
>3g33_B CCND3 protein; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens}
Probab=31.51 E-value=56 Score=30.91 Aligned_cols=88 Identities=13% Similarity=0.119 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHcCCChHHH--H--HHHHHHHHHhccCCCccCCcchHHHHHHHHHhhhhhcccCCCcccccccc---cCC
Q psy16565 168 IYKFIRTLFNAAQLTAECA--I--ITLVYLERLLTYAEVDITPGNWKRIVLGAILLASKVWDDQAVWNVDYCQI---LKD 240 (377)
Q Consensus 168 I~~FV~~L~~~a~ls~ec~--I--vaLVYieRL~~~~~i~i~p~nw~RL~L~ALlLAsK~~dD~~~~N~~~a~i---~~g 240 (377)
.++|+..+++...++.+.. + .+..+++--+. ..........-|-++||.+|.+.++....|...|... +.|
T Consensus 171 p~~fl~~~l~~l~~~~~~~~~~~~~a~~~l~lsl~--d~~~l~~~PS~IAaAai~lA~~~l~~~~~w~~~w~~~L~~~tg 248 (306)
T 3g33_B 171 AHDFLAFILHRLSLPRDRQALVKKHAQTFLALCAT--DYTFAMYPPSMIATGSIGAAVQGLGACSMSGDELTELLAGITG 248 (306)
T ss_dssp GGGGHHHHHHTSSCCTTTHHHHHHHHHHHHHHHHH--CGGGTTSCHHHHHHHHHHHHHHTCC---CCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHh--hhhhccCCHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHC
Confidence 4667777777776654422 1 22234442222 1122234455788889999999999877775555432 236
Q ss_pred CCHHHHHHHHHHHHHhc
Q psy16565 241 ISVEDMNELERQFLEML 257 (377)
Q Consensus 241 isl~elN~LEr~FL~lL 257 (377)
++.+++...-.+.++++
T Consensus 249 ~~~~~l~~c~~~I~~l~ 265 (306)
T 3g33_B 249 TEVDCLRACQEQIEAAL 265 (306)
T ss_dssp CCHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHH
Confidence 66666665544444443
No 29
>2cch_B Cyclin A2, cyclin-A; complex(transferase/cell division), ATP-binding, CDK2, cell cycle, cyclin, mitosis, nuclear protein; HET: TPO ATP; 1.7A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1fvv_B* 1jsu_B* 1okv_B 1okw_B* 1ol1_B* 1ol2_B* 1urc_B 1fin_B* 2c5p_B* 2c5o_B* 2i40_B* 2wev_B* 2wfy_B 2whb_B* 3eid_B* 3ej1_B* 3eoc_B* 2wha_B* 2x1n_B* 1vyw_B* ...
Probab=24.09 E-value=1.5e+02 Score=26.92 Aligned_cols=86 Identities=14% Similarity=0.086 Sum_probs=51.5
Q ss_pred hHHHHHHHHHHHcCCCh-HHHHHHHHHHHHHhccCCCccCCcchHHHHHHHHHhhhhhcccCCCcccccccccCCCCHHH
Q psy16565 167 QIYKFIRTLFNAAQLTA-ECAIITLVYLERLLTYAEVDITPGNWKRIVLGAILLASKVWDDQAVWNVDYCQILKDISVED 245 (377)
Q Consensus 167 ~I~~FV~~L~~~a~ls~-ec~IvaLVYieRL~~~~~i~i~p~nw~RL~L~ALlLAsK~~dD~~~~N~~~a~i~~gisl~e 245 (377)
+-++|+.++.+...++. ...-++..+++--+...++ .......-|-.+|+.+|.+.++. ..|+.....+ .|++.++
T Consensus 138 tp~~fl~~~~~~l~~~~~~~~~~a~~l~e~sl~~~~~-~~~~~Ps~iAaAai~lA~~~~~~-~~w~~~l~~~-~g~~~~~ 214 (260)
T 2cch_B 138 TVNQFLTQYFLHQQPANCKVESLAMFLGELSLIDADP-YLKYLPSVIAGAAFHLALYTVTG-QSWPESLIRK-TGYTLES 214 (260)
T ss_dssp CHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHCHHH-HTTSCHHHHHHHHHHHHHHHHHS-CCSCHHHHHH-HCCCHHH
T ss_pred CHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhHHH-HhCCCHHHHHHHHHHHHHHHhCC-CcchHHHHHH-hCcCHHH
Confidence 56899999999888765 4444554445542221110 22344557788889999998876 4455444433 4677666
Q ss_pred HHHHHHHHHH
Q psy16565 246 MNELERQFLE 255 (377)
Q Consensus 246 lN~LEr~FL~ 255 (377)
+...=.+++.
T Consensus 215 i~~~~~~l~~ 224 (260)
T 2cch_B 215 LKPCLMDLHQ 224 (260)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 6654444443
Done!