RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy16565
(377 letters)
>d1w98b2 a.74.1.1 (B:88-227) G1/S-specific cyclin-E1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 140
Score = 40.7 bits (95), Expect = 5e-05
Identities = 13/102 (12%), Positives = 43/102 (42%), Gaps = 3/102 (2%)
Query: 163 PEHRQI-YKFIRTLFNAAQLTAECAIITLVYLERLLTYAEVDITPGNWKRIVLGAILLAS 221
P+ R I ++ + +L E + + +R + E + + I + ++ +A+
Sbjct: 40 PKMRAILLDWLMEVCEVYKLHRETFYLAQDFFDRYMATQEN-VVKTLLQLIGISSLFIAA 98
Query: 222 KVWDDQAVWNVDYCQILKD-ISVEDMNELERQFLEMLQFNIN 262
K+ + + + S +++ +E ++ L++ ++
Sbjct: 99 KLEEIYPPKLHQFAYVTDGACSGDEILTMELMIMKALKWRLS 140
>d1bu2a1 a.74.1.1 (A:22-148) Viral cyclin {Herpesvirus saimiri
[TaxId: 10381]}
Length = 127
Score = 35.6 bits (82), Expect = 0.002
Identities = 14/83 (16%), Positives = 34/83 (40%), Gaps = 3/83 (3%)
Query: 180 QLTAECAIITLVYLERLLTYAEVDITPGNWKRIVLGAILLASKVWDDQAVWNVDYCQILK 239
+L +++ L+R L T ++I +L+ SK+ + + +
Sbjct: 46 ELDKSVFPLSVSILDRYLCK--KQGTKKTLQKIGAACVLIGSKIRTVKPMTVSKLTYLSC 103
Query: 240 DI-SVEDMNELERQFLEMLQFNI 261
D + ++ E+ LE L+++
Sbjct: 104 DCFTNLELINQEKDILEALKWDT 126
>d2cchb1 a.74.1.1 (B:181-308) Cyclin A {Cow (Bos taurus) [TaxId:
9913]}
Length = 128
Score = 34.9 bits (80), Expect = 0.004
Identities = 18/83 (21%), Positives = 40/83 (48%), Gaps = 3/83 (3%)
Query: 180 QLTAECAIITLVYLERLLTYAEVDITPGNWKRIVLGAILLASKVWDDQAVWNVDYCQILK 239
+L E + + Y++R L+ + + G + + A+LLASK + ++ I
Sbjct: 46 KLQNETLHLAVNYIDRFLSS--MSVLRGKLQLVGTAAMLLASKFEEIYPPEVAEFVYITD 103
Query: 240 DI-SVEDMNELERQFLEMLQFNI 261
D + + + +E L++L F++
Sbjct: 104 DTYTKKQVLRMEHLVLKVLTFDL 126
>d1g3nc1 a.74.1.1 (C:16-147) Viral cyclin {Kaposi's
sarcoma-associated herpesvirus [TaxId: 37296]}
Length = 132
Score = 33.7 bits (77), Expect = 0.011
Identities = 18/101 (17%), Positives = 43/101 (42%), Gaps = 4/101 (3%)
Query: 163 PEHRQI-YKFIRTLFNAAQLTAECAIITLVYLERLLTYAEVDITPGNWKRIVLGAILLAS 221
R++ ++ ++ L + L L+RLL ++ ++++ +L+AS
Sbjct: 33 SHMRKLLGTWMFSVCQEYNLEPNVVALALNLLDRLLLI--KQVSKEHFQKTGSACLLVAS 90
Query: 222 KVWDDQAVWNVDYCQILKD-ISVEDMNELERQFLEMLQFNI 261
K+ + C D S +++ + E++ LE L +
Sbjct: 91 KLRSLTPISTSSLCYAAADSFSRQELIDQEKELLEKLAWRT 131
>d2i53a1 a.74.1.1 (A:14-157) Cyclin K {Human (Homo sapiens) [TaxId:
9606]}
Length = 144
Score = 33.8 bits (77), Expect = 0.012
Identities = 19/112 (16%), Positives = 35/112 (31%), Gaps = 14/112 (12%)
Query: 164 EHRQIY-KFIRTLFNAAQLTAECAIITLVYLERLLTYAEVDITPGNWKRIVLGAILLASK 222
+R+ +FI + L + ++Y R Y + LA K
Sbjct: 35 RYRREGARFIFDVGTRLGLHYDTLATGIIYFHRF--YMFHSFKQFPRYVTGACCLFLAGK 92
Query: 223 VWDDQAVWNVD---YCQILKDISVEDMN--------ELERQFLEMLQFNINV 263
V + +L D+ LER L+ ++F++ V
Sbjct: 93 VEETPKKCKDIIKTARSLLNDVQFGQFGDDPKEEVMVLERILLQTIKFDLQV 144
>d2ivxa1 a.74.1.1 (A:7-149) Cyclin-T2 {Human (Homo sapiens) [TaxId:
9606]}
Length = 143
Score = 31.2 bits (70), Expect = 0.085
Identities = 24/117 (20%), Positives = 38/117 (32%), Gaps = 19/117 (16%)
Query: 164 EHRQIY-KFIRTLFNAAQLTAECAIITLVYLERLLTYAEVDITPGNWKRIVLGAILLASK 222
RQ I+ + ++ +VY+ R Y T N I A+ LA+K
Sbjct: 29 SCRQQAANLIQEMGQRLNVSQLTINTAIVYMHRF--YMHHSFTKFNKNIISSTALFLAAK 86
Query: 223 VWDDQA----VWNVDYCQILKDISVEDMN------------ELERQFLEMLQFNINV 263
V + V V + + + D LE L+ L F I +
Sbjct: 87 VEEQARKLEHVIKVAHACLHPLEPLLDTKCDAYLQQTRELVILETIMLQTLGFEITI 143
>d1jkwa1 a.74.1.1 (A:11-161) Cyclin H (mcs2) {Human (Homo sapiens)
[TaxId: 9606]}
Length = 151
Score = 30.0 bits (67), Expect = 0.22
Identities = 19/90 (21%), Positives = 38/90 (42%), Gaps = 12/90 (13%)
Query: 180 QLTAECAIITLVYLERLLTYAEVDITPGNWKRIVLGAILLASKVWDDQAVWNVDYCQILK 239
+ A +Y +R Y + + + I+L LA KV D+ V + + L+
Sbjct: 67 RSVVGTAC---MYFKRF--YLNNSVMEYHPRIIMLTCAFLACKV-DEFNVSSPQFVGNLR 120
Query: 240 ------DISVEDMNELERQFLEMLQFNINV 263
+ ++E + E E ++ L F++ V
Sbjct: 121 ESPLGQEKALEQILEYELLLIQQLNFHLIV 150
>d1nkga3 b.30.5.10 (A:1-250) Rhamnogalacturonase B, RhgB, N-terminal
domain {Aspergillus aculeatus [TaxId: 5053]}
Length = 250
Score = 29.8 bits (67), Expect = 0.49
Identities = 13/66 (19%), Positives = 24/66 (36%), Gaps = 18/66 (27%)
Query: 78 YQYNKNFSHIAADNRPLKKSSSCSTIYLDDSTVSQPNLKNTVKCSA----LAIYYYIKNG 133
QY+ SHI + L +TV+ + +K + L Y + NG
Sbjct: 42 LQYSSQGSHIGSG--------------LGSATVTATQSGDYIKVTCVTDTLTQYMVVHNG 87
Query: 134 NSYKYL 139
+ ++
Sbjct: 88 DPIIHM 93
>d2a6na1 c.1.10.1 (A:1-292) Dihydrodipicolinate synthase
{Escherichia coli [TaxId: 562]}
Length = 292
Score = 28.7 bits (63), Expect = 1.0
Identities = 12/93 (12%), Positives = 33/93 (35%)
Query: 209 WKRIVLGAILLASKVWDDQAVWNVDYCQILKDISVEDMNELERQFLEMLQFNINVPSSVY 268
+ LG + S + A C++ + + + ++ + + P+ +
Sbjct: 192 LDFMQLGGHGVISVTANVAARDMAQMCKLAAEGHFAEARVINQRLMPLHNKLFVEPNPIP 251
Query: 269 AKYYFDLRSLAESNDLTFPAEPLSKERAQKLEA 301
K+ L ++ L P P++ + + A
Sbjct: 252 VKWACKELGLVATDTLRLPMTPITDSGRETVRA 284
>d1l0wa3 d.104.1.1 (A:105-294,A:415-580) Aspartyl-tRNA synthetase
(AspRS) {Thermus thermophilus, AspRS-1 [TaxId: 274]}
Length = 356
Score = 27.4 bits (60), Expect = 2.6
Identities = 10/129 (7%), Positives = 32/129 (24%), Gaps = 11/129 (8%)
Query: 58 HPKAGTIFLERSKLEQLVRVYQYNKNF---------SHIAADNRPLKKSSSCSTIYLDDS 108
+ R ++ + + + + F R
Sbjct: 33 RRRMQENLRLRHRVIKAIWDFLDREGFVQVETPFLTKSTPEGARDFLVPYRHEPGLFYAL 92
Query: 109 TVSQPNLKNTVKCSALAIYYYIKNGNSYKYLEIFDEKLHPLTRDPVPEDYDRYPPEHRQI 168
S K + + L Y+ I ++ ++ ++ T+ + +
Sbjct: 93 PQSPQLFKQMLMVAGLDRYFQI--ARCFRDEDLRADRQPDFTQLDLEMSFVEVEDVLELN 150
Query: 169 YKFIRTLFN 177
+ + +F
Sbjct: 151 ERLMAHVFR 159
>d2hhva2 e.8.1.1 (A:469-876) DNA polymerase I (Klenow fragment)
{Bacillus stearothermophilus, newly identified strain as
yet unnamed [TaxId: 1422]}
Length = 408
Score = 27.6 bits (60), Expect = 2.8
Identities = 9/46 (19%), Positives = 20/46 (43%), Gaps = 3/46 (6%)
Query: 231 NVDYCQILKDISVEDMNELERQFLEML--QFNINVPSSVYAKYYFD 274
+ + + E + +E++ E+ +FNIN P + F+
Sbjct: 28 DTKRLEQMGKELAEQLGTVEQRIYELAGQEFNINSPKQL-GVILFE 72
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.316 0.131 0.381
Gapped
Lambda K H
0.267 0.0616 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,418,657
Number of extensions: 67337
Number of successful extensions: 228
Number of sequences better than 10.0: 1
Number of HSP's gapped: 225
Number of HSP's successfully gapped: 19
Length of query: 377
Length of database: 2,407,596
Length adjustment: 87
Effective length of query: 290
Effective length of database: 1,213,086
Effective search space: 351794940
Effective search space used: 351794940
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (24.8 bits)