BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy16566
(281 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2LCK|A Chain A, Structure Of The Mitochondrial Uncoupling Protein 2
Determined By Nmr Molecular Fragment Replacement
Length = 303
Score = 100 bits (249), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 66/253 (26%), Positives = 121/253 (47%), Gaps = 22/253 (8%)
Query: 38 AKLKYRGMTDVLLQISRKDGFWALYSGISPAVIRQATYGTIKFGTYYSLKNFIVEKTGQE 97
A +YRG+ +L + R +G +LY+G+ + RQ ++ +++ G Y S+K F + +
Sbjct: 43 ASAQYRGVLGTILTMVRTEGPRSLYNGLVAGLQRQMSFASVRIGLYDSVKQFYTKGSEHA 102
Query: 98 DIVVNVGCAVAAGILASSIANPTDVVKVHMQV---VHSNRRGWSLLVKFGTYYSLKNFIV 154
I + G LA ++A PTDVVKV Q RR S + + T
Sbjct: 103 GIGSRLLAGSTTGALAVAVAQPTDVVKVRFQAQARAGGGRRYQSTVEAYKT--------- 153
Query: 155 EKTGQEDIVVNVGCAVAAGILASSIANPTDVVK---VRMQVVHSNSLVTCLHDIYTKEGV 211
+E+ + + + + ++I N ++V ++ ++ +N + L +T
Sbjct: 154 --IAREEGIRGLWKGTSPNVARNAIVNCAELVTYDLIKDTLLKANLMTDDLPCHFTSAFG 211
Query: 212 GAFWKTRLMN-----QKHLKNQHVRVYKGSIDCMLQTIKHEGFMALYKGFIPTWVRMGPW 266
F T + + + N + Y + C L ++ EG A YKGF+P+++R+G W
Sbjct: 212 AGFCTTVIASPVDVVKTRYMNSALGQYHSAGHCALTMLRKEGPRAFYKGFMPSFLRLGSW 271
Query: 267 NIIFFITYEQLKK 279
N++ F+TYEQLK+
Sbjct: 272 NVVMFVTYEQLKR 284
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 25/51 (49%)
Query: 41 KYRGMTDVLLQISRKDGFWALYSGISPAVIRQATYGTIKFGTYYSLKNFIV 91
+Y L + RK+G A Y G P+ +R ++ + F TY LK ++
Sbjct: 237 QYHSAGHCALTMLRKEGPRAFYKGFMPSFLRLGSWNVVMFVTYEQLKRALM 287
>pdb|1OKC|A Chain A, Structure Of Mitochondrial AdpATP CARRIER IN COMPLEX WITH
Carboxyatractyloside
pdb|2C3E|A Chain A, The Bovine Mitochondrial Adp-Atp Carrier
Length = 297
Score = 37.0 bits (84), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 26/113 (23%), Positives = 51/113 (45%), Gaps = 29/113 (25%)
Query: 169 AVAAGILASSIANPTDVVKVRMQVVHSNSLVTCLHDIYTKEGVGAFWKTRLMNQKHLKNQ 228
VAA I +++A P + VK+ +QV H++ ++
Sbjct: 15 GVAAAISKTAVA-PIERVKLLLQVQHASKQISA--------------------------- 46
Query: 229 HVRVYKGSIDCMLQTIKHEGFMALYKGFIPTWVRMGPWNIIFFITYEQLKKHF 281
+ YKG IDC+++ K +GF++ ++G + +R P + F ++ K+ F
Sbjct: 47 -EKQYKGIIDCVVRIPKEQGFLSFWRGNLANVIRYFPTQALNFAFKDKYKQIF 98
Score = 34.3 bits (77), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 31/125 (24%), Positives = 56/125 (44%), Gaps = 5/125 (4%)
Query: 16 VNELLSAKTRLXXXXXXXXXXYAKLKYRGMTDVLLQISRKDGFWALYSGISPAVIRQATY 75
V L A+TRL A+ ++ G+ + + +I + DG LY G + +V Y
Sbjct: 130 VYPLDFARTRLAADVGKGA---AQREFTGLGNCITKIFKSDGLRGLYQGFNVSVQGIIIY 186
Query: 76 GTIKFGTYYSLKNFIVEKTGQEDIVVNVGCAVAAGILASSIANPTDVVKVHMQVVHSNRR 135
FG Y + K + + I+V+ A +A ++ P D V+ M ++ S R+
Sbjct: 187 RAAYFGVYDTAKGMLPDPKNVH-IIVSWMIAQTVTAVAGLVSYPFDTVRRRM-MMQSGRK 244
Query: 136 GWSLL 140
G ++
Sbjct: 245 GADIM 249
Score = 32.7 bits (73), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
Query: 216 KTRLMNQKHLKNQHVRVYKGSIDCMLQTIKHEGFMALYKGFIPTWVRMGPWNIIFFITYE 275
+ R+M Q K + +Y G++DC + K EG A +KG +R G + Y+
Sbjct: 234 RRRMMMQSGRKGADI-MYTGTVDCWRKIAKDEGPKAFFKGAWSNVLR-GMGGAFVLVLYD 291
Query: 276 QLKK 279
++KK
Sbjct: 292 EIKK 295
>pdb|2G29|A Chain A, Crystal Structure Of The Periplasmic Nitrate-binding
Protein Nrta From Synechocystis Pcc 6803
Length = 417
Score = 29.6 bits (65), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 27/43 (62%), Gaps = 1/43 (2%)
Query: 38 AKLKYRGMTDVL-LQISRKDGFWALYSGISPAVIRQATYGTIK 79
AKL + +TD L I+++ GF+A Y V++QA++GT +
Sbjct: 35 AKLGFIALTDAAPLIIAKEKGFYAKYGMPDVEVLKQASWGTTR 77
>pdb|3K3K|A Chain A, Crystal Structure Of Dimeric Abscisic Acid (Aba) Receptor
Pyrabactin Resistance 1 (Pyr1) With Aba-Bound Closed-Lid
And Aba-Free Open-Lid Subunits
pdb|3K3K|B Chain B, Crystal Structure Of Dimeric Abscisic Acid (Aba) Receptor
Pyrabactin Resistance 1 (Pyr1) With Aba-Bound Closed-Lid
And Aba-Free Open-Lid Subunits
Length = 211
Score = 29.3 bits (64), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 18/81 (22%), Positives = 39/81 (48%), Gaps = 5/81 (6%)
Query: 118 NPTDVVKVHMQVVHSNRR-GWSLLVKFGTYYSLKNFIVEKTGQEDIVVNVGCA----VAA 172
+P +H Q +H+ WS++ +F + K+FI + +++ + VGC V +
Sbjct: 46 DPGSCSSLHAQRIHAPPELVWSIVRRFDKPQTYKHFIKSCSVEQNFEMRVGCTRDVIVIS 105
Query: 173 GILASSIANPTDVVKVRMQVV 193
G+ A++ D++ +V
Sbjct: 106 GLPANTSTERLDILDDERRVT 126
>pdb|3NJO|A Chain A, X-Ray Crystal Structure Of The Pyr1-Pyrabactin A Complex
pdb|3NJO|B Chain B, X-Ray Crystal Structure Of The Pyr1-Pyrabactin A Complex
pdb|3NJO|C Chain C, X-Ray Crystal Structure Of The Pyr1-Pyrabactin A Complex
Length = 194
Score = 28.9 bits (63), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 18/81 (22%), Positives = 39/81 (48%), Gaps = 5/81 (6%)
Query: 118 NPTDVVKVHMQVVHSNRR-GWSLLVKFGTYYSLKNFIVEKTGQEDIVVNVGCA----VAA 172
+P +H Q +H+ WS++ +F + K+FI + +++ + VGC V +
Sbjct: 29 DPGSCSSLHAQRIHAPPELVWSIVRRFDKPQTYKHFIKSCSVEQNFEMRVGCTRDVIVIS 88
Query: 173 GILASSIANPTDVVKVRMQVV 193
G+ A++ D++ +V
Sbjct: 89 GLSANTSTERLDILDDERRVT 109
>pdb|3K90|A Chain A, The Abscisic Acid Receptor Pyr1 In Complex With Abscisic
Acid
pdb|3K90|B Chain B, The Abscisic Acid Receptor Pyr1 In Complex With Abscisic
Acid
pdb|3K90|C Chain C, The Abscisic Acid Receptor Pyr1 In Complex With Abscisic
Acid
pdb|3K90|D Chain D, The Abscisic Acid Receptor Pyr1 In Complex With Abscisic
Acid
pdb|3QN1|A Chain A, Crystal Structure Of The Pyr1 Abscisic Acid Receptor In
Complex With The Hab1 Type 2c Phosphatase Catalytic
Domain
Length = 193
Score = 28.9 bits (63), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 18/81 (22%), Positives = 39/81 (48%), Gaps = 5/81 (6%)
Query: 118 NPTDVVKVHMQVVHSNRR-GWSLLVKFGTYYSLKNFIVEKTGQEDIVVNVGCA----VAA 172
+P +H Q +H+ WS++ +F + K+FI + +++ + VGC V +
Sbjct: 28 DPGSCSSLHAQRIHAPPELVWSIVRRFDKPQTYKHFIKSCSVEQNFEMRVGCTRDVIVIS 87
Query: 173 GILASSIANPTDVVKVRMQVV 193
G+ A++ D++ +V
Sbjct: 88 GLPANTSTERLDILDDERRVT 108
>pdb|3E7D|A Chain A, Crystal Structure Of Precorrin-8x Methyl Mutase CbicCOBH
FROM Brucella Melitensis
pdb|3E7D|B Chain B, Crystal Structure Of Precorrin-8x Methyl Mutase CbicCOBH
FROM Brucella Melitensis
pdb|3E7D|C Chain C, Crystal Structure Of Precorrin-8x Methyl Mutase CbicCOBH
FROM Brucella Melitensis
pdb|3E7D|D Chain D, Crystal Structure Of Precorrin-8x Methyl Mutase CbicCOBH
FROM Brucella Melitensis
Length = 212
Score = 28.9 bits (63), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 11/39 (28%), Positives = 22/39 (56%)
Query: 182 PTDVVKVRMQVVHSNSLVTCLHDIYTKEGVGAFWKTRLM 220
P D+ K+ ++V+H+ +V +D+ EG G + L+
Sbjct: 33 PADLEKLAVRVIHACGMVDVANDLAFSEGAGKAGRNALL 71
>pdb|2HEV|F Chain F, Crystal Structure Of The Complex Between Ox40l And Ox40
Length = 137
Score = 27.7 bits (60), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 21/38 (55%)
Query: 126 HMQVVHSNRRGWSLLVKFGTYYSLKNFIVEKTGQEDIV 163
HMQV H R S+ V+F Y K FI+ +++I+
Sbjct: 3 HMQVSHRYPRIQSIKVQFTEYKKEKGFILTSQKEDEIM 40
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.137 0.414
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,521,773
Number of Sequences: 62578
Number of extensions: 287822
Number of successful extensions: 577
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 560
Number of HSP's gapped (non-prelim): 17
length of query: 281
length of database: 14,973,337
effective HSP length: 98
effective length of query: 183
effective length of database: 8,840,693
effective search space: 1617846819
effective search space used: 1617846819
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 51 (24.3 bits)