Query psy16566
Match_columns 281
No_of_seqs 144 out of 1323
Neff 9.5
Searched_HMMs 29240
Date Fri Aug 16 16:19:06 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16566.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/16566hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2lck_A Mitochondrial uncouplin 100.0 4.7E-48 1.6E-52 334.7 17.9 243 4-281 7-286 (303)
2 1okc_A ADP, ATP carrier protei 100.0 1.2E-46 4.2E-51 325.0 20.2 245 4-281 13-297 (297)
3 1okc_A ADP, ATP carrier protei 99.9 2.1E-26 7.3E-31 198.3 13.6 155 97-281 5-201 (297)
4 2lck_A Mitochondrial uncouplin 99.9 1E-25 3.4E-30 194.6 12.9 149 102-281 4-192 (303)
5 3tgu_G UQCRQ, mitochondrial ub 15.2 87 0.003 20.4 2.0 33 247-279 32-64 (81)
6 2a3d_A Protein (de novo three- 15.0 2.1E+02 0.0071 17.0 3.7 16 18-33 10-25 (73)
7 2acm_A Mucin-1; auto-catalytic 13.7 35 0.0012 20.8 -0.2 20 43-62 40-59 (66)
8 1pp9_G Ubiquinol-cytochrome C 12.2 1.5E+02 0.0051 19.2 2.5 33 247-279 32-64 (81)
9 3f2e_A SIRV coat protein; four 11.5 1.3E+02 0.0044 19.3 1.9 31 233-263 8-42 (100)
10 2czy_A Paired amphipathic heli 10.5 80 0.0027 20.2 0.7 28 18-54 10-37 (77)
No 1
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton translocator, mitochondrial carrier transport protein, structural genomics; NMR {Mus musculus}
Probab=100.00 E-value=4.7e-48 Score=334.68 Aligned_cols=243 Identities=32% Similarity=0.524 Sum_probs=206.2
Q ss_pred ccchHHHhhhhhcccHHHHHHHHHHhcccchh--hhhccccCcHHHHHHHHHhhcchhhhcccchHHHHHHhhhhhhhhh
Q psy16566 4 DLPYLILAREKGVNELLSAKTRLQVQGQQLDQ--QYAKLKYRGMTDVLLQISRKDGFWALYSGISPAVIRQATYGTIKFG 81 (281)
Q Consensus 4 ~~~~a~~~~~~~~~Pld~ik~r~Q~~~~~~~~--~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~ll~~~~~~~~~f~ 81 (281)
++.+||+++.+++||||+||+|+|++...... .....+|+++++++++|+++||++|||||+.+++++.+|..+++|.
T Consensus 7 aG~~ag~~~~~~~~Pld~iKtrlQ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~i~f~ 86 (303)
T 2lck_A 7 GAGTAACIADLITFPLDTAKVRLQIQGESQGLVRTAASAQYRGVLGTILTMVRTEGPRSLYNGLVAGLQRQMSFASVRIG 86 (303)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHSSCCTTCCSHHHHCSCSSCSCHHHHHHHHHHHHCHHHHHSSHHHHHHHHHHHHHHTTT
T ss_pred hHHHHHHHHHHHcCcHHHHHHHHHhhhccccccccccCCCCCCHHHHHHHHHHhhCHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 45678999999999999999999998653211 0123468999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHhhhcCCCchHHHHHHHHHHhHhhhhhcchHHHHHHhHhhcccC------c-------------------ch
Q psy16566 82 TYYSLKNFIVEKTGQEDIVVNVGCAVAAGILASSIANPTDVVKVHMQVVHSN------R-------------------RG 136 (281)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~Pld~vk~r~q~~~~~------~-------------------~G 136 (281)
+|+.+|+.+.+.....+.+..+++|++||+++.++++|+|++|+|+|++... . ||
T Consensus 87 ~ye~~k~~~~~~~~~~~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG 166 (303)
T 2lck_A 87 LYDSVKQFYTKGSEHAGIGSRLLAGSTTGALAVAVAQPTDVVKVRFQAQARAGGGRRYQSTVEAYKTIAREEGIRGLWKG 166 (303)
T ss_dssp HHHHHHHHHSCCCSSCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHSCSCCCSSSCCCHHHHHHHHHHHHCHHHHHHH
T ss_pred HHHHHHHHHhcCCcCCcHHHHHHHHHHHHHHHHHHcCcHHHHHHHHhcccccCCCCCCCCHHHHHHHHHHhcChhhhhCC
Confidence 9999999886543346788899999999999999999999999999997531 1 66
Q ss_pred hhH---------HHHHhhHHHHHHHHhhhcCCchhH-HHHHHHHHHHHhhhccCCcHHHHHHHHHhhccCchhhhhhhhh
Q psy16566 137 WSL---------LVKFGTYYSLKNFIVEKTGQEDIV-VNVGCAVAAGILASSIANPTDVVKVRMQVVHSNSLVTCLHDIY 206 (281)
Q Consensus 137 ~~~---------~~~~~~y~~~~~~~~~~~~~~~~~-~~~~~~~~a~~~a~~~~~P~dvik~r~Q~~~~~~~~~~~~~~~ 206 (281)
+.+ +++|.+||.+|+.+.+.....+.. ...+++++||++++++++|+|+||+|||.+.
T Consensus 167 ~~~~l~~~~~~~~i~f~~ye~~k~~l~~~~~~~~~~~~~~~~g~~ag~~~~~~~~P~dvvktrlq~~~------------ 234 (303)
T 2lck_A 167 TSPNVARNAIVNCAELVTYDLIKDTLLKANLMTDDLPCHFTSAFGAGFCTTVIASPVDVVKTRYMNSA------------ 234 (303)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTTTTTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC------------
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHHHcCHHHHHHHHHHhcc------------
Confidence 665 899999999999887654333334 4444559999999999999999997777642
Q ss_pred hhcccccchhhhhhccccccccccccccchHHHHHHHHHhhhhhHhhcchhhhhhhhccchhHHHHHHHHHhhcC
Q psy16566 207 TKEGVGAFWKTRLMNQKHLKNQHVRVYKGSIDCMLQTIKHEGFMALYKGFIPTWVRMGPWNIIFFITYEQLKKHF 281 (281)
Q Consensus 207 ~~~~~~~~~~~r~~~~~~~~~~~~~~y~~~~~~~~~i~~~eG~~gly~G~~~~~~~~~~~~~i~~~~ye~~~~~~ 281 (281)
. ..|+++++|+++++++||++|||||+.++++|.+|+++++|.+||.+++++
T Consensus 235 -----------------~------~~y~~~~~~~~~i~~~eG~~glyrG~~~~~~r~~p~~~i~f~~ye~~k~~l 286 (303)
T 2lck_A 235 -----------------L------GQYHSAGHCALTMLRKEGPRAFYKGFMPSFLRLGSWNVVMFVTYEQLKRAL 286 (303)
T ss_dssp -----------------S------SSCCSHHHHHHHHHHSSCTHHHHSCCHHHHHHHHHHHHHHHHHHHHHHSCC
T ss_pred -----------------c------cccCCHHHHHHHHHHHcChHHhhccHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 1 128999999999999999999999999999999999999999999999864
No 2
>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial transporter, nucleotide translocation, membrane protein, transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP: f.42.1.1 PDB: 2c3e_A*
Probab=100.00 E-value=1.2e-46 Score=324.98 Aligned_cols=245 Identities=22% Similarity=0.329 Sum_probs=197.3
Q ss_pred ccchHHHhhhhhcccHHHHHHHHHHhcccchhhhhccccCcHHHHHHHHHhhcchhhhcccchHHHHHHhhhhhhhhhhh
Q psy16566 4 DLPYLILAREKGVNELLSAKTRLQVQGQQLDQQYAKLKYRGMTDVLLQISRKDGFWALYSGISPAVIRQATYGTIKFGTY 83 (281)
Q Consensus 4 ~~~~a~~~~~~~~~Pld~ik~r~Q~~~~~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~ll~~~~~~~~~f~~~ 83 (281)
++.+||+++.+++||||+||+|+|++..... ......|+++++++++|+++||++|||||+.+++++.+|..+++|.+|
T Consensus 13 aG~~ag~~~~~~~~Pld~vKtrlQ~~~~~~~-~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~~~f~~y 91 (297)
T 1okc_A 13 AGGVAAAISKTAVAPIERVKLLLQVQHASKQ-ISAEKQYKGIIDCVVRIPKEQGFLSFWRGNLANVIRYFPTQALNFAFK 91 (297)
T ss_dssp HHHHHHHHHHHHTHHHHHHHHHHHHGGGCSS-CCGGGSCCSHHHHHHHHHHHHCGGGGGTTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHhcccccc-cccccccccHHHHHHHHHhccchhheecccHHHHHHHHHHHHHHHHHH
Confidence 4567889999999999999999999864321 112347899999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhh-cCCC----chHHHHHHHHHHhHhhhhhcchHHHHHHhHhhcccC-------c-----------------
Q psy16566 84 YSLKNFIVEK-TGQE----DIVVNVGCAVAAGILASSIANPTDVVKVHMQVVHSN-------R----------------- 134 (281)
Q Consensus 84 ~~~~~~~~~~-~~~~----~~~~~~~~g~~a~~~~~~~~~Pld~vk~r~q~~~~~-------~----------------- 134 (281)
+.+++.+... +... +.+..+++|++||+++.++++|+|+||+|+|++... .
T Consensus 92 e~~k~~~~~~~~~~~~~~~~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~~~~~~~~~~~~~~~~~i~~~eG~~g 171 (297)
T 1okc_A 92 DKYKQIFLGGVDRHKQFWRYFAGNLASGGAAGATSLCFVYPLDFARTRLAADVGKGAAQREFTGLGNCITKIFKSDGLRG 171 (297)
T ss_dssp HHHHHHHHTTCCTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSTTTCSCSSHHHHHHHHHHHHCHHH
T ss_pred HHHHHHhccccCcccchHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHhccccCCCcCcCCCCHHHHHHHHHHhccHHH
Confidence 9999865332 2211 246788999999999999999999999999997421 1
Q ss_pred --chhhH---------HHHHhhHHHHHHHHhhhcCCchhHHHHHHHHHHHHhhhccCCcHHHHHHHHHhhccCchhhhhh
Q psy16566 135 --RGWSL---------LVKFGTYYSLKNFIVEKTGQEDIVVNVGCAVAAGILASSIANPTDVVKVRMQVVHSNSLVTCLH 203 (281)
Q Consensus 135 --~G~~~---------~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~~~~P~dvik~r~Q~~~~~~~~~~~~ 203 (281)
||+.+ +++|.+||.+|+.+.+.. ........++++++|++++++++|+|+||+|||.+....
T Consensus 172 lyrG~~~~l~~~~~~~~~~f~~ye~~k~~~~~~~-~~~~~~~~~~g~~ag~~a~~~t~P~dvvktr~q~~~~~~------ 244 (297)
T 1okc_A 172 LYQGFNVSVQGIIIYRAAYFGVYDTAKGMLPDPK-NVHIIVSWMIAQTVTAVAGLVSYPFDTVRRRMMMQSGRK------ 244 (297)
T ss_dssp HTTTHHHHHHHHHHHHHHHHHHHHHHHHSSCGGG-CSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCC------
T ss_pred hcCCchHHHHHHHHHHHHHHHHHHHHHHHhccCC-CccHHHHHHHHHHHHHHHHHhcChHHHHHHHHhhcCCCC------
Confidence 67666 899999999999775432 223344555559999999999999999999998753110
Q ss_pred hhhhhcccccchhhhhhccccccccccccccchHHHHHHHHHhhhhhHhhcchhhhhhhhccchhHHHHHHHHHhhcC
Q psy16566 204 DIYTKEGVGAFWKTRLMNQKHLKNQHVRVYKGSIDCMLQTIKHEGFMALYKGFIPTWVRMGPWNIIFFITYEQLKKHF 281 (281)
Q Consensus 204 ~~~~~~~~~~~~~~r~~~~~~~~~~~~~~y~~~~~~~~~i~~~eG~~gly~G~~~~~~~~~~~~~i~~~~ye~~~~~~ 281 (281)
. ....|+++++|+++|+++||++|||||+.++++|. +.++++|.+||.+++++
T Consensus 245 -----------------------~-~~~~y~~~~~~~~~i~~~eG~~glyrG~~~~~~r~-~~~~~~f~~ye~~k~~l 297 (297)
T 1okc_A 245 -----------------------G-ADIMYTGTVDCWRKIAKDEGPKAFFKGAWSNVLRG-MGGAFVLVLYDEIKKFV 297 (297)
T ss_dssp -----------------------G-GGCSCSSHHHHHHHHHHHHCGGGGGTTHHHHHHHH-HHHHHHHHHHHTC----
T ss_pred -----------------------C-CCCCCCCHHHHHHHHHHHcCcCeEecchHHHHHhh-ccceeeehHHHHHHhhC
Confidence 0 11239999999999999999999999999999996 57899999999999864
No 3
>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial transporter, nucleotide translocation, membrane protein, transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP: f.42.1.1 PDB: 2c3e_A*
Probab=99.94 E-value=2.1e-26 Score=198.27 Aligned_cols=155 Identities=19% Similarity=0.323 Sum_probs=124.8
Q ss_pred CchHHHHHHHHHHhHhhhhhcchHHHHHHhHhhcccC---------c-------------------chhhH---------
Q psy16566 97 EDIVVNVGCAVAAGILASSIANPTDVVKVHMQVVHSN---------R-------------------RGWSL--------- 139 (281)
Q Consensus 97 ~~~~~~~~~g~~a~~~~~~~~~Pld~vk~r~q~~~~~---------~-------------------~G~~~--------- 139 (281)
.+.+..+++|++||+++.++++|+|++|+|+|++... . ||+.+
T Consensus 5 ~~~~~~~~aG~~ag~~~~~~~~Pld~vKtrlQ~~~~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~ 84 (297)
T 1okc_A 5 LSFLKDFLAGGVAAAISKTAVAPIERVKLLLQVQHASKQISAEKQYKGIIDCVVRIPKEQGFLSFWRGNLANVIRYFPTQ 84 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHGGGCSSCCGGGSCCSHHHHHHHHHHHHCGGGGGTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHhcccccccccccccccHHHHHHHHHhccchhheecccHHHHHHHHHHH
Confidence 3467889999999999999999999999999997521 1 66665
Q ss_pred HHHHhhHHHHHHHHhhhcCCc-h---hHH-HHHHHHHHHHhhhccCCcHHHHHHHHHhhccCchhhhhhhhhhhcccccc
Q psy16566 140 LVKFGTYYSLKNFIVEKTGQE-D---IVV-NVGCAVAAGILASSIANPTDVVKVRMQVVHSNSLVTCLHDIYTKEGVGAF 214 (281)
Q Consensus 140 ~~~~~~y~~~~~~~~~~~~~~-~---~~~-~~~~~~~a~~~a~~~~~P~dvik~r~Q~~~~~~~~~~~~~~~~~~~~~~~ 214 (281)
+++|.+||.+|+.+.+..+.. . ... ..+++++||++++++++|+|+||+|||++....
T Consensus 85 ~~~f~~ye~~k~~~~~~~~~~~~~~~~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~~----------------- 147 (297)
T 1okc_A 85 ALNFAFKDKYKQIFLGGVDRHKQFWRYFAGNLASGGAAGATSLCFVYPLDFARTRLAADVGKG----------------- 147 (297)
T ss_dssp HHHHHHHHHHHHHHHTTCCTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSS-----------------
T ss_pred HHHHHHHHHHHHHhccccCcccchHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHhccccCC-----------------
Confidence 899999999999654332221 1 223 344449999999999999999999999753110
Q ss_pred hhhhhhccccccccccccccchHHHHHHHHHhhhhhHhhcchhhhhhhhccchhHHHHHHHHHhhcC
Q psy16566 215 WKTRLMNQKHLKNQHVRVYKGSIDCMLQTIKHEGFMALYKGFIPTWVRMGPWNIIFFITYEQLKKHF 281 (281)
Q Consensus 215 ~~~r~~~~~~~~~~~~~~y~~~~~~~~~i~~~eG~~gly~G~~~~~~~~~~~~~i~~~~ye~~~~~~ 281 (281)
.....|.++++++++++++||++|||||+.++++|.+|.+++.|.+||.+++++
T Consensus 148 -------------~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~~~f~~ye~~k~~~ 201 (297)
T 1okc_A 148 -------------AAQREFTGLGNCITKIFKSDGLRGLYQGFNVSVQGIIIYRAAYFGVYDTAKGML 201 (297)
T ss_dssp -------------TTTCSCSSHHHHHHHHHHHHCHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred -------------CcCcCCCCHHHHHHHHHHhccHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 011238999999999999999999999999999999999999999999998764
No 4
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton translocator, mitochondrial carrier transport protein, structural genomics; NMR {Mus musculus}
Probab=99.93 E-value=1e-25 Score=194.61 Aligned_cols=149 Identities=30% Similarity=0.407 Sum_probs=123.7
Q ss_pred HHHHHHHHhHhhhhhcchHHHHHHhHhhcccC------------c-------------------chhhH---------HH
Q psy16566 102 NVGCAVAAGILASSIANPTDVVKVHMQVVHSN------------R-------------------RGWSL---------LV 141 (281)
Q Consensus 102 ~~~~g~~a~~~~~~~~~Pld~vk~r~q~~~~~------------~-------------------~G~~~---------~~ 141 (281)
.+++|++||+++.++++|+|++|+|+|++... . ||+.+ ++
T Consensus 4 ~~~aG~~ag~~~~~~~~Pld~iKtrlQ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~i 83 (303)
T 2lck_A 4 KFLGAGTAACIADLITFPLDTAKVRLQIQGESQGLVRTAASAQYRGVLGTILTMVRTEGPRSLYNGLVAGLQRQMSFASV 83 (303)
T ss_dssp HHHHHHHHHHHHHHTTHHHHHHHHHSSCCTTCCSHHHHCSCSSCSCHHHHHHHHHHHHCHHHHHSSHHHHHHHHHHHHHH
T ss_pred hHHhHHHHHHHHHHHcCcHHHHHHHHHhhhccccccccccCCCCCCHHHHHHHHHHhhCHHHHHcCCHHHHHHHHHHHHH
Confidence 57899999999999999999999999986531 1 66665 88
Q ss_pred HHhhHHHHHHHHhhhcCCchhHHHHHHHHHHHHhhhccCCcHHHHHHHHHhhccCchhhhhhhhhhhcccccchhhhhhc
Q psy16566 142 KFGTYYSLKNFIVEKTGQEDIVVNVGCAVAAGILASSIANPTDVVKVRMQVVHSNSLVTCLHDIYTKEGVGAFWKTRLMN 221 (281)
Q Consensus 142 ~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~~~~P~dvik~r~Q~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 221 (281)
+|.+||.+|+.+.+..+........++++++|++++++++|+|+||+|||++...
T Consensus 84 ~f~~ye~~k~~~~~~~~~~~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~------------------------- 138 (303)
T 2lck_A 84 RIGLYDSVKQFYTKGSEHAGIGSRLLAGSTTGALAVAVAQPTDVVKVRFQAQARA------------------------- 138 (303)
T ss_dssp TTTHHHHHHHHHSCCCSSCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHSCSC-------------------------
T ss_pred HHHHHHHHHHHHhcCCcCCcHHHHHHHHHHHHHHHHHHcCcHHHHHHHHhccccc-------------------------
Confidence 9999999999886542333344445555999999999999999999999975310
Q ss_pred cccccccccccccchHHHHHHHHHhhhhhHhhcchhhhhhhhccchhHHHHHHHHHhhcC
Q psy16566 222 QKHLKNQHVRVYKGSIDCMLQTIKHEGFMALYKGFIPTWVRMGPWNIIFFITYEQLKKHF 281 (281)
Q Consensus 222 ~~~~~~~~~~~y~~~~~~~~~i~~~eG~~gly~G~~~~~~~~~~~~~i~~~~ye~~~~~~ 281 (281)
. ....|.++++++++|+++||++|||||+.++++|.+|..++.|.+||.+++.+
T Consensus 139 --~----~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~i~f~~ye~~k~~l 192 (303)
T 2lck_A 139 --G----GGRRYQSTVEAYKTIAREEGIRGLWKGTSPNVARNAIVNCAELVTYDLIKDTL 192 (303)
T ss_dssp --C----CSSSCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred --C----CCCCCCCHHHHHHHHHHhcChhhhhCCccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 11238999999999999999999999999999999999999999999998864
No 5
>3tgu_G UQCRQ, mitochondrial ubiquinol-cytochrome C reductase UB binding protein QP-C; cytochrome BC1, membrane protein, heme protein, rieske iron protein; HET: HEM WF3 UQ CDL PEE HEC BOG; 2.70A {Gallus gallus} PDB: 3cwb_G* 3h1i_G* 3h1h_G* 3h1k_G* 3h1l_G* 3h1j_G* 3l71_G* 3l72_G* 3l73_G* 3l74_G* 3l75_G* 3l70_G*
Probab=15.16 E-value=87 Score=20.42 Aligned_cols=33 Identities=9% Similarity=0.230 Sum_probs=24.2
Q ss_pred hhhhHhhcchhhhhhhhccchhHHHHHHHHHhh
Q psy16566 247 EGFMALYKGFIPTWVRMGPWNIIFFITYEQLKK 279 (281)
Q Consensus 247 eG~~gly~G~~~~~~~~~~~~~i~~~~ye~~~~ 279 (281)
.|+...+|-+...++..+|..++.+.+|+..++
T Consensus 32 ~~i~N~~RR~~~q~l~v~pPfi~~Y~i~~Wa~~ 64 (81)
T 3tgu_G 32 DALPNVWRRFSSQVFKVAPPFLGAYLLYSWGTQ 64 (81)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHhhhHhhHHHHHHHHHHHHHHH
Confidence 345555556667788889999999999877653
No 6
>2a3d_A Protein (de novo three-helix bundle); NMR {Synthetic construct} SCOP: k.9.1.1
Probab=14.97 E-value=2.1e+02 Score=17.04 Aligned_cols=16 Identities=44% Similarity=0.461 Sum_probs=12.1
Q ss_pred cHHHHHHHHHHhcccc
Q psy16566 18 ELLSAKTRLQVQGQQL 33 (281)
Q Consensus 18 Pld~ik~r~Q~~~~~~ 33 (281)
-|..||||+|.-.++.
T Consensus 10 rlaaiktrlqalggse 25 (73)
T 2a3d_A 10 RLAAIKTRLQALGGSE 25 (73)
T ss_dssp HHHHHHHHHHHCSSGG
T ss_pred HHHHHHHHHHHhcCcH
Confidence 4667999999876643
No 7
>2acm_A Mucin-1; auto-catalytic proteolysis, structural protein; NMR {Homo sapiens}
Probab=13.75 E-value=35 Score=20.77 Aligned_cols=20 Identities=35% Similarity=0.728 Sum_probs=16.8
Q ss_pred CcHHHHHHHHHhhcchhhhc
Q psy16566 43 RGMTDVLLQISRKDGFWALY 62 (281)
Q Consensus 43 ~~~~~~~~~i~~~eG~~gly 62 (281)
+++.+.+.+|++++|+.|++
T Consensus 40 r~is~L~lqIykq~~FLgl~ 59 (66)
T 2acm_A 40 RDISEMFLQIYKQGGFLGLS 59 (66)
T ss_dssp HHHHHHHHHHCTTTTEEEEE
T ss_pred HHHHHHHHHHHccCCeeeee
Confidence 36778899999999998886
No 8
>1pp9_G Ubiquinol-cytochrome C reductase complex ubiquino protein QP-C; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: f.23.13.1 PDB: 1bgy_G* 1be3_G* 1l0n_G* 1ntk_G* 1ntm_G* 1ntz_G* 1nu1_G* 1l0l_G* 1ppj_G* 1sqb_G* 1sqp_G* 1sqq_G* 1sqv_G* 1sqx_G* 2a06_G* 2fyu_G* 2ybb_G* 1bcc_G* 2bcc_G* 3bcc_G* ...
Probab=12.19 E-value=1.5e+02 Score=19.25 Aligned_cols=33 Identities=15% Similarity=0.309 Sum_probs=26.2
Q ss_pred hhhhHhhcchhhhhhhhccchhHHHHHHHHHhh
Q psy16566 247 EGFMALYKGFIPTWVRMGPWNIIFFITYEQLKK 279 (281)
Q Consensus 247 eG~~gly~G~~~~~~~~~~~~~i~~~~ye~~~~ 279 (281)
+|+...+|-+...++..+|..++.+.+|+..++
T Consensus 32 ~~i~n~~RR~~~~~l~v~pPfv~~Y~i~~Wa~~ 64 (81)
T 1pp9_G 32 KGIPNVLRRTRACILRVAPPFVAFYLVYTWGTQ 64 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHhcceeeehhHHHHHHHHHHHHH
Confidence 566667777778888889999999999977654
No 9
>3f2e_A SIRV coat protein; four helix bundle, virus coat protein, viral protein; HET: CIT; 1.67A {Sulfolobus islandicus rudivirus 1 variorganism_taxid}
Probab=11.53 E-value=1.3e+02 Score=19.30 Aligned_cols=31 Identities=19% Similarity=0.364 Sum_probs=20.4
Q ss_pred ccchHHHHHHHHHhhhh----hHhhcchhhhhhhh
Q psy16566 233 YKGSIDCMLQTIKHEGF----MALYKGFIPTWVRM 263 (281)
Q Consensus 233 y~~~~~~~~~i~~~eG~----~gly~G~~~~~~~~ 263 (281)
+.++-+-+..++.+-|+ ++.|.|+.....|.
T Consensus 8 ftsvne~vsavltqygvtgpnraiyqgfglkvara 42 (100)
T 3f2e_A 8 FTAVAEQVSAVLSQYGITGPNRAIYQGFGLKVARA 42 (100)
T ss_dssp CHHHHHHHHHHHHHHTCCGGGHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHhcCCCccHHHHhhhhHHHHHH
Confidence 55555555666666553 67888888876654
No 10
>2czy_A Paired amphipathic helix protein SIN3B; SIN3, PAH1, transcriptional repressor, gene regulation; NMR {Mus musculus}
Probab=10.51 E-value=80 Score=20.23 Aligned_cols=28 Identities=18% Similarity=0.337 Sum_probs=19.4
Q ss_pred cHHHHHHHHHHhcccchhhhhccccCcHHHHHHHHHh
Q psy16566 18 ELLSAKTRLQVQGQQLDQQYAKLKYRGMTDVLLQISR 54 (281)
Q Consensus 18 Pld~ik~r~Q~~~~~~~~~~~~~~~~~~~~~~~~i~~ 54 (281)
=++.||.|.|-+++ +|..+.++++..-+
T Consensus 10 yl~~VK~~F~~~p~---------~Y~~FL~im~~~k~ 37 (77)
T 2czy_A 10 YLDQVKIRFGSDPA---------TYNGFLEIMKEFKS 37 (77)
T ss_dssp HHHHHHHHTTTCHH---------HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHccChH---------HHHHHHHHHHHHHH
Confidence 36788998886543 67777777776543
Done!