RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy16566
(281 letters)
>gnl|CDD|215754 pfam00153, Mito_carr, Mitochondrial carrier protein.
Length = 96
Score = 88.1 bits (219), Expect = 2e-22
Identities = 34/120 (28%), Positives = 48/120 (40%), Gaps = 32/120 (26%)
Query: 162 IVVNVGCAVAAGILASSIANPTDVVKVRMQVVHSNSLVTCLHDIYTKEGVGAFWKTRLMN 221
+ ++ AG +A+++ P DVVK R+Q
Sbjct: 5 FLASLLAGGIAGAIAATVTYPLDVVKTRLQ------------------------------ 34
Query: 222 QKHLKNQHVRVYKGSIDCMLQTIKHEGFMALYKGFIPTWVRMGPWNIIFFITYEQLKKHF 281
R YKG +DC + K EG LYKG +P +R+ P I+F TYE LKK
Sbjct: 35 --SSAAGGSRKYKGILDCFKKIYKEEGIRGLYKGLLPNLLRVAPAAAIYFGTYETLKKLL 92
Score = 66.9 bits (164), Expect = 3e-14
Identities = 25/72 (34%), Positives = 38/72 (52%), Gaps = 5/72 (6%)
Query: 22 AKTRLQVQGQQLDQQYAKLKYRGMTDVLLQISRKDGFWALYSGISPAVIRQATYGTIKFG 81
KTRLQ KY+G+ D +I +++G LY G+ P ++R A I FG
Sbjct: 29 VKTRLQSSAAG-----GSRKYKGILDCFKKIYKEEGIRGLYKGLLPNLLRVAPAAAIYFG 83
Query: 82 TYYSLKNFIVEK 93
TY +LK +++K
Sbjct: 84 TYETLKKLLLKK 95
Score = 35.7 bits (83), Expect = 0.004
Identities = 9/30 (30%), Positives = 17/30 (56%)
Query: 99 IVVNVGCAVAAGILASSIANPTDVVKVHMQ 128
+ ++ AG +A+++ P DVVK +Q
Sbjct: 5 FLASLLAGGIAGAIAATVTYPLDVVKTRLQ 34
>gnl|CDD|240302 PTZ00169, PTZ00169, ADP/ATP transporter on adenylate translocase;
Provisional.
Length = 300
Score = 44.0 bits (104), Expect = 3e-05
Identities = 41/138 (29%), Positives = 64/138 (46%), Gaps = 8/138 (5%)
Query: 22 AKTRLQVQ-GQQLDQQYAKLKYRGMTDVLLQISRKDGFWALYSGISPAVIRQATYGTIKF 80
A+TRL G+ D+++ G+ D L++IS++ GF +LY G +V Y F
Sbjct: 137 ARTRLASDIGKGGDREF-----TGLFDCLMKISKQTGFLSLYQGFGVSVQGIIVYRGAYF 191
Query: 81 GTYYSLKNFIVEKTGQEDIVVNVGCAVAAGILASSIANPTDVVKVHMQVVHSNRRGWSLL 140
G Y S K + +I+ A ILA I+ P D V+ M ++ S R+ S +
Sbjct: 192 GLYDSAKALLFGNDKNTNILYKWAVAQTVTILAGLISYPFDTVRRRMMMM-SGRKAKSEI 250
Query: 141 VKFGTYYSLKNFIVEKTG 158
GT K I++ G
Sbjct: 251 QYTGTLDCWKK-ILKNEG 267
Score = 40.9 bits (96), Expect = 4e-04
Identities = 57/281 (20%), Positives = 101/281 (35%), Gaps = 76/281 (27%)
Query: 41 KYRGMTDVLLQISRKDGFWALYSGISPAVIRQATYGTIKFGTYYSLKNFI---VEKTGQE 97
+Y G+ + ++S++ G +L+ G + VIR + T F ++ K++ K Q+
Sbjct: 51 RYSGIVNCFRRVSKEQGVLSLWRGNTANVIRY--FPTQAFN--FAFKDYFKNMFPKYNQK 106
Query: 98 D-----IVVNVGCAVAAGILASSIANPTD------------------------VVKVHMQ 128
VN+ AG + I P D ++K+ Q
Sbjct: 107 TDFWKFFGVNILSGGLAGASSLLIVYPLDFARTRLASDIGKGGDREFTGLFDCLMKISKQ 166
Query: 129 V-VHSNRRGWSLLVK---------FGTYYSLKNFIVEKTGQEDIVVNVGCAVAAGILASS 178
S +G+ + V+ FG Y S K + +I+ A ILA
Sbjct: 167 TGFLSLYQGFGVSVQGIIVYRGAYFGLYDSAKALLFGNDKNTNILYKWAVAQTVTILAGL 226
Query: 179 IANPTDVVKVRMQVVHSNSLVTCLHDIYTKEGVGAFWKTRLMNQKHLKNQHVRVYKGSID 238
I+ P D V+ RM +M + Y G++D
Sbjct: 227 ISYPFDTVRRRM----------------------------MMMSGRKAKSEI-QYTGTLD 257
Query: 239 CMLQTIKHEGFMALYKGFIPTWVRMGPWNIIFFITYEQLKK 279
C + +K+EG +KG +R G + + Y++L+K
Sbjct: 258 CWKKILKNEGLGGFFKGAWANVLR-GAGGALVLVFYDELQK 297
>gnl|CDD|185494 PTZ00168, PTZ00168, mitochondrial carrier protein; Provisional.
Length = 259
Score = 31.4 bits (71), Expect = 0.41
Identities = 14/43 (32%), Positives = 26/43 (60%)
Query: 172 AGILASSIANPTDVVKVRMQVVHSNSLVTCLHDIYTKEGVGAF 214
A I A + P ++VK MQV + S++ +++I +EG+ +F
Sbjct: 94 AEITACIVRLPFEIVKQNMQVSGNISVLKTIYEITQREGLPSF 136
Score = 30.3 bits (68), Expect = 0.93
Identities = 45/199 (22%), Positives = 78/199 (39%), Gaps = 55/199 (27%)
Query: 61 LYSGISPAVIRQATYGTIK----FGTYYSL-------KNFIVEKTGQEDIVVNVGCAVAA 109
LYSGI P ++ GT+ F +Y L + KT I ++ A
Sbjct: 45 LYSGILPTLV-----GTVPASAFFYCFYELSKKLLTEYRENISKTNLYLISTSI-----A 94
Query: 110 GILASSIANPTDVVKVHMQV---------VHSNRRGWSLLVKFGTYY-----------SL 149
I A + P ++VK +MQV ++ + L G Y +
Sbjct: 95 EITACIVRLPFEIVKQNMQVSGNISVLKTIYEITQREGLPSFLGKSYFVMIVREIPFDCI 154
Query: 150 KNFIVE---KTGQEDI---------VVNVGCAVAAGILASSIANPTDVVKVRMQVVHSNS 197
+ F+ E + ++D + + C AG +A + P DV+K R Q+++ S
Sbjct: 155 QYFLWETLKEKAKKDFGKFSKKYPSITSAICGGLAGGIAGFLTTPVDVIKSR-QIIYGKS 213
Query: 198 LVTCLHDIYTKEGVGAFWK 216
+ + +I +EG F+K
Sbjct: 214 YIETVTEI-AEEGYLTFYK 231
>gnl|CDD|220255 pfam09476, Pilus_CpaD, Pilus biogenesis CpaD protein (pilus_cpaD).
Proteins in this entry consist of a pilus biogenesis
protein, CpaD, from Caulobacter, and homologues in other
bacteria, including three in the root nodule bacterium
Bradyrhizobium japonicum. The molecular function of the
homologues is not known.
Length = 200
Score = 29.6 bits (67), Expect = 1.3
Identities = 12/25 (48%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
Query: 165 NVGCAVAAGILASSIANPTDVVKVR 189
N GCA LA+ +ANP D+V+ R
Sbjct: 157 NFGCATQNN-LAAMVANPRDLVQPR 180
Score = 28.8 bits (65), Expect = 2.1
Identities = 11/23 (47%), Positives = 15/23 (65%), Gaps = 1/23 (4%)
Query: 102 NVGCAVAAGILASSIANPTDVVK 124
N GCA LA+ +ANP D+V+
Sbjct: 157 NFGCATQNN-LAAMVANPRDLVQ 178
>gnl|CDD|227748 COG5461, COG5461, Type IV pili component [Cell motility and
secretion].
Length = 224
Score = 29.1 bits (65), Expect = 1.9
Identities = 11/27 (40%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Query: 165 NVGCAVAAGILASSIANPTDVVKVRMQ 191
N GCA + LA+ +ANP D++ R
Sbjct: 170 NFGCATQSN-LAAQVANPRDLLGPRAM 195
Score = 28.7 bits (64), Expect = 3.2
Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Query: 102 NVGCAVAAGILASSIANPTDVVKVH-MQVVHSNRRG 136
N GCA + LA+ +ANP D++ M + + RR
Sbjct: 170 NFGCATQSN-LAAQVANPRDLLGPRAMTPIDAERRA 204
>gnl|CDD|233910 TIGR02522, pilus_cpaD, pilus (Caulobacter type) biogenesis
lipoprotein CpaD. This family consists of a pilus
biogenesis protein, CpaD, from Caulobacter, and homologs
in other bacteria, including three in the root nodule
bacterium Bradyrhizobium japonicum. The molecular
function is not known [Cell envelope, Surface
structures].
Length = 198
Score = 28.6 bits (64), Expect = 2.6
Identities = 12/27 (44%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Query: 165 NVGCAVAAGILASSIANPTDVVKVRMQ 191
N GCA LA+ IANP D++ R
Sbjct: 155 NFGCATQNN-LAAQIANPRDLLGPRAM 180
Score = 27.5 bits (61), Expect = 6.8
Identities = 11/22 (50%), Positives = 14/22 (63%), Gaps = 1/22 (4%)
Query: 102 NVGCAVAAGILASSIANPTDVV 123
N GCA LA+ IANP D++
Sbjct: 155 NFGCATQNN-LAAQIANPRDLL 175
>gnl|CDD|215257 PLN02464, PLN02464, glycerol-3-phosphate dehydrogenase.
Length = 627
Score = 29.0 bits (65), Expect = 2.9
Identities = 26/101 (25%), Positives = 40/101 (39%), Gaps = 17/101 (16%)
Query: 126 HMQVVHSNRRGWSL---LVKFGTYYSLKNFIVEKTGQ-EDIVVNVGCAVAAGILASSIAN 181
H+ +S + L L K G SLK +V GQ D +NV A A + +++ N
Sbjct: 192 HLSRYYSAKESLELFPTLAKKGKDGSLKGTVVYYDGQMNDSRLNVALACTAALAGAAVLN 251
Query: 182 PTDVVKVRMQVVHSNSLVTCLHDIYTKEGVGAFWKTRLMNQ 222
+VV + + D T VGA + L +
Sbjct: 252 YAEVVSL-------------IKDESTGRIVGARVRDNLTGK 279
Score = 28.6 bits (64), Expect = 4.8
Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
Query: 81 GTYYSLKNFIVEKTGQ-EDIVVNVGCAVAAGILASSIANPTDVVKVHM 127
G SLK +V GQ D +NV A A + +++ N +VV +
Sbjct: 213 GKDGSLKGTVVYYDGQMNDSRLNVALACTAALAGAAVLNYAEVVSLIK 260
>gnl|CDD|184803 PRK14717, PRK14717, putative glycine/sarcosine/betaine reductase
complex protein A; Provisional.
Length = 107
Score = 27.0 bits (60), Expect = 4.6
Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 9/51 (17%)
Query: 90 IVEKTGQEDIVVNVGCAVA--AGILASSIAN-------PTDVVKVHMQVVH 131
+ EK G E+IVV +G A A AG+ A ++ N P V++ + V H
Sbjct: 12 LAEKYGAENIVVILGAAEAEAAGLAAETVTNGDPTFAGPLAGVQLGLPVYH 62
Score = 26.6 bits (59), Expect = 6.8
Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 9/51 (17%)
Query: 153 IVEKTGQEDIVVNVGCAVA--AGILASSIAN-------PTDVVKVRMQVVH 194
+ EK G E+IVV +G A A AG+ A ++ N P V++ + V H
Sbjct: 12 LAEKYGAENIVVILGAAEAEAAGLAAETVTNGDPTFAGPLAGVQLGLPVYH 62
>gnl|CDD|224935 COG2024, COG2024, Phenylalanyl-tRNA synthetase alpha subunit
(archaeal type) [Translation, ribosomal structure and
biogenesis].
Length = 536
Score = 28.2 bits (63), Expect = 5.2
Identities = 25/86 (29%), Positives = 36/86 (41%), Gaps = 25/86 (29%)
Query: 82 TYYSLKNFIVEKTGQEDIVVNVGCAVAAGILA---------------SSIANP---TDVV 123
TY+S +V+ ED+ V+ G AVA G+L S P T+V
Sbjct: 230 TYHSASCVVVD----EDVTVDDGKAVAEGLLRQFGFEKFRFRPDEKKSKYYVPGTQTEVY 285
Query: 124 KVHMQVVHSNRR---GWSLLVKFGTY 146
H ++V S + GW + FG Y
Sbjct: 286 AYHPKLVGSIEKYSDGWIEIATFGLY 311
>gnl|CDD|216059 pfam00685, Sulfotransfer_1, Sulfotransferase domain.
Length = 254
Score = 27.3 bits (61), Expect = 8.5
Identities = 9/23 (39%), Positives = 13/23 (56%)
Query: 257 IPTWVRMGPWNIIFFITYEQLKK 279
+ W ++ P I F+ YE LKK
Sbjct: 146 VKGWWKLRPPGNILFLRYEDLKK 168
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.323 0.137 0.410
Gapped
Lambda K H
0.267 0.0724 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 14,167,057
Number of extensions: 1330319
Number of successful extensions: 1143
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1139
Number of HSP's successfully gapped: 27
Length of query: 281
Length of database: 10,937,602
Length adjustment: 96
Effective length of query: 185
Effective length of database: 6,679,618
Effective search space: 1235729330
Effective search space used: 1235729330
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 58 (26.1 bits)