RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy16566
(281 letters)
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton
translocator, mitochondrial carrier transport protein,
structural genomics; NMR {Mus musculus}
Length = 303
Score = 233 bits (597), Expect = 2e-76
Identities = 82/297 (27%), Positives = 130/297 (43%), Gaps = 72/297 (24%)
Query: 22 AKTRLQVQG--QQLDQQYAKLKYRGMTDVLLQISRKDGFWALYSGISPAVIRQATYGTIK 79
AK RLQ+QG Q L + A +YRG+ +L + R +G +LY+G+ + RQ ++ +++
Sbjct: 25 AKVRLQIQGESQGLVRTAASAQYRGVLGTILTMVRTEGPRSLYNGLVAGLQRQMSFASVR 84
Query: 80 FGTYYSLKNFIVEKTGQEDIVVNVGCAVAAGILASSIANPTDVVKVHMQ----------- 128
G Y S+K F + + I + G LA ++A PTDVVKV Q
Sbjct: 85 IGLYDSVKQFYTKGSEHAGIGSRLLAGSTTGALAVAVAQPTDVVKVRFQAQARAGGGRRY 144
Query: 129 --VVHSNR------------RGWSL---------LVKFGTYYSLKNFIVEKTGQED-IVV 164
V + + +G S + TY +K+ +++ D +
Sbjct: 145 QSTVEAYKTIAREEGIRGLWKGTSPNVARNAIVNCAELVTYDLIKDTLLKANLMTDDLPC 204
Query: 165 NVGCAVAAGILASSIANPTDVVKVRMQVVHSNSLVTCLHDIYTKEGVGAFWKTRLMNQKH 224
+ A AG + IA+P DVV KTR MN
Sbjct: 205 HFTSAFGAGFCTTVIASPVDVV-----------------------------KTRYMNSAL 235
Query: 225 LKNQHVRVYKGSIDCMLQTIKHEGFMALYKGFIPTWVRMGPWNIIFFITYEQLKKHF 281
+ Y + C L ++ EG A YKGF+P+++R+G WN++ F+TYEQLK+
Sbjct: 236 GQ------YHSAGHCALTMLRKEGPRAFYKGFMPSFLRLGSWNVVMFVTYEQLKRAL 286
Score = 106 bits (266), Expect = 3e-27
Identities = 46/223 (20%), Positives = 68/223 (30%), Gaps = 71/223 (31%)
Query: 99 IVVNVGCAVAAGILASSIANPTDVVKVHMQVVHSNR------------------------ 134
+ V A A +A I P D KV +Q+ ++
Sbjct: 1 MTVKFLGAGTAACIADLITFPLDTAKVRLQIQGESQGLVRTAASAQYRGVLGTILTMVRT 60
Query: 135 -------RGWS--LL-------VKFGTYYSLKNFIVEKTGQEDIVVNVGCAVAAGILASS 178
G L V+ G Y S+K F + + I + G LA +
Sbjct: 61 EGPRSLYNGLVAGLQRQMSFASVRIGLYDSVKQFYTKGSEHAGIGSRLLAGSTTGALAVA 120
Query: 179 IANPTDVVKVRMQVVHSNSLVTCLHDIYTKEGVGAFWKTRLMNQKHLKNQHVRVYKGSID 238
+A PTDVVKVR Q Q R Y+ +++
Sbjct: 121 VAQPTDVVKVRFQ-----------------------------AQARAGGG--RRYQSTVE 149
Query: 239 CMLQTIKHEGFMALYKGFIPTWVRMGPWNIIFFITYEQLKKHF 281
+ EG L+KG P R N +TY+ +K
Sbjct: 150 AYKTIAREEGIRGLWKGTSPNVARNAIVNCAELVTYDLIKDTL 192
Score = 57.3 bits (139), Expect = 8e-10
Identities = 18/77 (23%), Positives = 29/77 (37%), Gaps = 8/77 (10%)
Query: 22 AKTRLQVQGQQLDQQYAKLKYRGMTDVLLQISRKDGFWALYSGISPAVIRQATYGTIKFG 81
KTR +Y L + RK+G A Y G P+ +R ++ + F
Sbjct: 226 VKTRYMNSA--------LGQYHSAGHCALTMLRKEGPRAFYKGFMPSFLRLGSWNVVMFV 277
Query: 82 TYYSLKNFIVEKTGQED 98
TY LK ++ +
Sbjct: 278 TYEQLKRALMAAYQSRE 294
>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial
transporter, nucleotide translocation, membrane protein,
transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP:
f.42.1.1 PDB: 2c3e_A*
Length = 297
Score = 139 bits (352), Expect = 8e-40
Identities = 54/297 (18%), Positives = 98/297 (32%), Gaps = 73/297 (24%)
Query: 23 KTRLQVQGQQLDQQYAKLKYRGMTDVLLQISRKDGFWALYSGISPAVIRQATYGTIKFGT 82
K LQVQ Q A+ +Y+G+ D +++I ++ GF + + G VIR + F
Sbjct: 32 KLLLQVQHAS-KQISAEKQYKGIIDCVVRIPKEQGFLSFWRGNLANVIRYFPTQALNFAF 90
Query: 83 YYSLKNFIVEKTGQED-----IVVNVGCAVAAGILASSIANPTDVVKVHMQVVHSNR--- 134
K + + N+ AAG + P D + +
Sbjct: 91 KDKYKQIFLGGVDRHKQFWRYFAGNLASGGAAGATSLCFVYPLDFARTRLAADVGKGAAQ 150
Query: 135 -----------------------RGW--SLL-------VKFGTYYSLKNFIVEKTGQEDI 162
+G+ S+ FG Y + K + + I
Sbjct: 151 REFTGLGNCITKIFKSDGLRGLYQGFNVSVQGIIIYRAAYFGVYDTAKGMLPDPK-NVHI 209
Query: 163 VVNVGCAVAAGILASSIANPTDVVKVRMQVVHSNSLVTCLHDIYTKEGVGAFWKTRLMNQ 222
+V+ A +A ++ P D V+ RM +
Sbjct: 210 IVSWMIAQTVTAVAGLVSYPFDTVRRRMMM------------------------------ 239
Query: 223 KHLKNQHVRVYKGSIDCMLQTIKHEGFMALYKGFIPTWVRMGPWNIIFFITYEQLKK 279
+ + +Y G++DC + K EG A +KG +R + + Y+++KK
Sbjct: 240 QSGRKGADIMYTGTVDCWRKIAKDEGPKAFFKGAWSNVLRGMGGAFV-LVLYDEIKK 295
Score = 87.7 bits (218), Expect = 2e-20
Identities = 26/108 (24%), Positives = 47/108 (43%), Gaps = 4/108 (3%)
Query: 22 AKTRLQVQGQQLDQQYAKLKYRGMTDVLLQISRKDGFWALYSGISPAVIRQATYGTIKFG 81
A+TRL + Q ++ G+ + + +I + DG LY G + +V Y FG
Sbjct: 136 ARTRLAADVGKGAAQR---EFTGLGNCITKIFKSDGLRGLYQGFNVSVQGIIIYRAAYFG 192
Query: 82 TYYSLKNFIVEKTGQEDIVVNVGCAVAAGILASSIANPTDVVKVHMQV 129
Y + K + + I+V+ A +A ++ P D V+ M +
Sbjct: 193 VYDTAKGMLPDPK-NVHIIVSWMIAQTVTAVAGLVSYPFDTVRRRMMM 239
Score = 86.2 bits (214), Expect = 6e-20
Identities = 30/215 (13%), Positives = 59/215 (27%), Gaps = 72/215 (33%)
Query: 109 AGILASSIANPTDVVKVHMQVVHSNRR---------------------GWSLL------- 140
A ++ + P + VK+ +QV H++++ G+
Sbjct: 17 AAAISKTAVAPIERVKLLLQVQHASKQISAEKQYKGIIDCVVRIPKEQGFLSFWRGNLAN 76
Query: 141 ---------VKFGTYYSLKNFIVEKTGQED-----IVVNVGCAVAAGILASSIANPTDVV 186
+ F K + + N+ AAG + P D
Sbjct: 77 VIRYFPTQALNFAFKDKYKQIFLGGVDRHKQFWRYFAGNLASGGAAGATSLCFVYPLDFA 136
Query: 187 KVRMQVVHSNSLVTCLHDIYTKEGVGAFWKTRLMNQKHLKNQHVRVYKGSIDCMLQTIKH 246
+ R+ K R + G +C+ + K
Sbjct: 137 RTRLAA------------------------------DVGKGAAQREFTGLGNCITKIFKS 166
Query: 247 EGFMALYKGFIPTWVRMGPWNIIFFITYEQLKKHF 281
+G LY+GF + + + +F Y+ K
Sbjct: 167 DGLRGLYQGFNVSVQGIIIYRAAYFGVYDTAKGML 201
Score = 53.8 bits (130), Expect = 1e-08
Identities = 15/68 (22%), Positives = 27/68 (39%), Gaps = 4/68 (5%)
Query: 23 KTRLQVQGQQLDQQYAKLKYRGMTDVLLQISRKDGFWALYSGISPAVIRQATYGTIKFGT 82
+ R+ +Q + Y G D +I++ +G A + G V+R G
Sbjct: 234 RRRMMMQSGRKGADI---MYTGTVDCWRKIAKDEGPKAFFKGAWSNVLR-GMGGAFVLVL 289
Query: 83 YYSLKNFI 90
Y +K F+
Sbjct: 290 YDEIKKFV 297
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 39.6 bits (92), Expect = 0.001
Identities = 34/261 (13%), Positives = 82/261 (31%), Gaps = 92/261 (35%)
Query: 29 QGQQLDQQYAKLKYRGMTDVLLQISRKDGFWALYSGIS------------------PA-- 68
+G+++ + Y+ + + + D ++ + F + + PA
Sbjct: 1680 KGKRIRENYSAMIFETIVDG--KLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALT 1737
Query: 69 VIRQATYGTIKFGTYYSLKNFIVEKTGQEDIVV---NVG--CAVA--AGILASSIANPTD 121
++ +A + +K ++ D ++G A+A A ++ SI
Sbjct: 1738 LMEKAAFEDLK-------SKGLI----PADATFAGHSLGEYAALASLADVM--SIE---S 1781
Query: 122 VVKVHMQVVHSNRRGWSLLVKF--------GTYYSL----KNFIVEKTGQEDI--VVNVG 167
+V+ VV RG + ++ + Y + + QE + VV
Sbjct: 1782 LVE----VVF--YRG--MTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERV 1833
Query: 168 CAVAAGILASSIAN---PTDVVKVRMQVVHSNSLVTCLHDIYTKEGVGAFWKTRLMNQKH 224
++ I N Q V + + T ++N
Sbjct: 1834 GKRTGWLV--EIVNYNVEN------QQYVAAG----------DLRALDTV--TNVLN--F 1871
Query: 225 LKNQHVRVYKGSIDCMLQTIK 245
+K Q + + + L+ ++
Sbjct: 1872 IKLQKIDIIELQKSLSLEEVE 1892
Score = 30.8 bits (69), Expect = 0.56
Identities = 44/280 (15%), Positives = 82/280 (29%), Gaps = 89/280 (31%)
Query: 16 VNELLSAKTRLQVQGQQLDQQYAKLKYRGMTDVLLQISRKDGFWALYSGISPAVIRQATY 75
+LL V+ ++L + Y +K + A+ R
Sbjct: 105 AAKLLQENDTTLVKTKELIKNY----ITARIMAKRPFDKK---------SNSALFRAVGE 151
Query: 76 GTIK----FG------TYYS-LKN-FIVEKTGQEDIVVNVGCAVAAGILASSIANPTDVV 123
G + FG Y+ L++ + D++ +A L+ I D
Sbjct: 152 GNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLI-----KFSAETLSELIRTTLDAE 206
Query: 124 KVHMQVVHSNRRGW------------------SL----LVKFGTYY-----------SLK 150
KV Q + N W S +++ Y L+
Sbjct: 207 KVFTQGL--NILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELR 264
Query: 151 NFIVEKTGQ-EDIVVNVGCAVAAGILASSIANPTDVVK------VRMQVVHSNSLV--TC 201
+++ TG + +V V A S + + VR + N+ + +
Sbjct: 265 SYLKGATGHSQGLVTAVAIA-ETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSI 323
Query: 202 LHD-IYTKEGV--------GAFWKTRLMNQKHLK--NQHV 230
L D + EGV T+ Q ++ N H+
Sbjct: 324 LEDSLENNEGVPSPMLSISNL---TQEQVQDYVNKTNSHL 360
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 30.7 bits (68), Expect = 0.30
Identities = 11/47 (23%), Positives = 17/47 (36%), Gaps = 20/47 (42%)
Query: 29 QGQQLDQQYAKLKYRGMTDVLLQISRKDGFWALYS-GISPAVIRQAT 74
+ Q L + A LK LY+ +PA+ +AT
Sbjct: 18 EKQALKKLQASLK-------------------LYADDSAPALAIKAT 45
>1zd1_A Sulfotransferase 4A1; SGC, SULT4A1, structural genomics, structural
genomics conso transferase; 2.24A {Homo sapiens}
Length = 284
Score = 30.1 bits (68), Expect = 0.63
Identities = 9/63 (14%), Positives = 21/63 (33%), Gaps = 13/63 (20%)
Query: 224 HLKNQHVRVYKGSIDCMLQTIKHEGFMALYKGFIPTWVRMGPW-------NIIFFITYEQ 276
++ Y+G+ FM G+ + + + N+ F+ YE
Sbjct: 145 FHRSLRTMSYRGTFQEFC-----RRFMNDKLGYGSWFEHVQEFWEHRMDSNV-LFLKYED 198
Query: 277 LKK 279
+ +
Sbjct: 199 MHR 201
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 29.8 bits (66), Expect = 1.4
Identities = 41/290 (14%), Positives = 78/290 (26%), Gaps = 93/290 (32%)
Query: 8 LILAREKGVNELLSAKTRLQVQGQQLDQQYAKLKYRGMTDVLLQISRKDGFWALYSGISP 67
L+ R K V + LSA T + +T Y P
Sbjct: 269 LLTTRFKQVTDFLSAATTTHISLDHHSM--------TLTP-----DEVKSLLLKYLDCRP 315
Query: 68 AVI-RQATYG---TIK-FGTYYSLKNFIVEKTGQEDIVVNVGCAVAAGILASSIAN--PT 120
+ R+ + S+++ + D +V C I+ SS+ P
Sbjct: 316 QDLPREVLTTNPRRLSIIAE--SIRDGL----ATWDNWKHVNCDKLTTIIESSLNVLEPA 369
Query: 121 DVVKVHMQVVHSNRRGWSLLVKFGTYYSLKNFIVEKTGQEDIVVNVGCAVAAGILASSIA 180
+ R+ + L F ++ + + ++ +
Sbjct: 370 EY-----------RK---------MFDRLSVF------PPS--AHIPTILLS-LIWFDV- 399
Query: 181 NPTDVVKVRMQVVHSNSLVTC--------LHDIYTKEGVGAFWKTRLMNQKHLKNQHVRV 232
V V + +H SLV + IY + K +L N+ L H +
Sbjct: 400 -IKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLEL------KVKLENEYAL---HRSI 449
Query: 233 YKGSIDCMLQTIKHEGFMALYKGFIPTWVRMGPWNIIF-FITYEQLKKHF 281
+D + IP ++ + I + H
Sbjct: 450 ----VDHYNIPKTFD-----SDDLIPPYLD----QYFYSHIGH-----HL 481
>2zpt_X Tyrosine-ester sulfotransferase; SULT1D1, catecholamine,
sulfonation; HET: A3P GOL; 1.15A {Mus musculus} PDB:
2zvp_X* 2zvq_X* 2zyt_X* 2zyu_X* 2zyv_X* 2zyw_X*
Length = 295
Score = 28.5 bits (64), Expect = 2.5
Identities = 13/63 (20%), Positives = 23/63 (36%), Gaps = 13/63 (20%)
Query: 224 HLKNQHVRVYKGSIDCMLQTIKHEGFMALYKGFIPTWVRMGPW-------NIIFFITYEQ 276
+ + G+ + L E FMA F P + + W I ++ YE
Sbjct: 142 FYQMAKIHPEPGTWEEFL-----EKFMAGQVSFGPWYDHVKSWWEKRKEYRI-LYLFYED 195
Query: 277 LKK 279
+K+
Sbjct: 196 MKE 198
>3jth_A Transcription activator HLYU; transcription factor, RTXA,
DNA-binding, transcription regulation; 2.00A {Vibrio
vulnificus}
Length = 98
Score = 26.8 bits (60), Expect = 3.0
Identities = 16/65 (24%), Positives = 26/65 (40%), Gaps = 8/65 (12%)
Query: 7 YLILAREKGVNELLSAKTRLQVQGQQLDQQYAKLKYRGMTDVLLQISRKDGFWALYSGIS 66
++ +E V EL + LQ+ L Q A L+ G+ +RK+ Y+ S
Sbjct: 30 CMLHNQELSVGELCAK---LQLSQSALSQHLAWLRRDGLVT-----TRKEAQTVYYTLKS 81
Query: 67 PAVIR 71
V
Sbjct: 82 EEVKA 86
>3ibp_A Chromosome partition protein MUKB; structural maintenance of
chromosomes, SMC, condensin, chromosome segregation,
hinge, dimerization domain; 3.10A {Escherichia coli}
Length = 302
Score = 27.8 bits (61), Expect = 3.6
Identities = 7/36 (19%), Positives = 15/36 (41%)
Query: 8 LILAREKGVNELLSAKTRLQVQGQQLDQQYAKLKYR 43
+I + V+ + L+ + +QL + L R
Sbjct: 4 MIASLSDSVSNAREERMALRQEQEQLQSRIQSLMQR 39
>1ls6_A ARYL sulfotransferase; SULT 1A1, PAP, P-nitrophenol, positive
cooperativity, two substrate binding sites; HET: A3P
NPO; 1.90A {Homo sapiens} SCOP: c.37.1.5 PDB: 2d06_A*
3u3o_A* 3u3k_A* 3u3m_A* 3u3j_A* 3u3r_A* 1z28_A* 3qvv_A*
3qvu_A* 1z29_A* 1cjm_A 2a3r_A*
Length = 295
Score = 27.5 bits (61), Expect = 5.0
Identities = 11/63 (17%), Positives = 20/63 (31%), Gaps = 13/63 (20%)
Query: 224 HLKNQHVRVYKGSIDCMLQTIKHEGFMALYKGFIPTWVRMGPW-------NIIFFITYEQ 276
V G+ D L E FM + + + W + ++ YE
Sbjct: 142 FYHMAKVHPEPGTWDSFL-----EKFMVGEVSYGSWYQHVQEWWELSRTHPV-LYLFYED 195
Query: 277 LKK 279
+K+
Sbjct: 196 MKE 198
>3bfx_A Sulfotransferase 1C2; PAP, structural genomics, PSI, protein
structure initiative, structural genomics consortium,
SGC, alternative splicing; HET: A3P; 1.80A {Homo
sapiens} SCOP: c.37.1.5
Length = 296
Score = 27.4 bits (61), Expect = 5.2
Identities = 10/63 (15%), Positives = 21/63 (33%), Gaps = 13/63 (20%)
Query: 224 HLKNQHVRVYKGSIDCMLQTIKHEGFMALYKGFIPTWVRMGPW-------NIIFFITYEQ 276
+ H+ G+ + E F+ + + + W I F+ YE
Sbjct: 143 FQRMNHMLPDPGTWEEYF-----ETFINGKVVWGSWFDHVKGWWEMKDRHQI-LFLFYED 196
Query: 277 LKK 279
+K+
Sbjct: 197 IKR 199
>3ckl_A Sulfotransferase family cytosolic 1B member 1; SULT1B1, human
cytosolic sulfotransferase, resveratrol, SGC, cytoplasm,
lipid metabolism; HET: STL A3P; 2.00A {Homo sapiens}
PDB: 2z5f_A*
Length = 298
Score = 27.1 bits (60), Expect = 6.2
Identities = 10/62 (16%), Positives = 23/62 (37%), Gaps = 11/62 (17%)
Query: 224 HLKNQHVRVYKGSIDCMLQTIKHEGFMALYKGFIPTWVRMGPWNI------IFFITYEQL 277
+++ + G+ + L E F+ + + + W I F+ YE +
Sbjct: 145 FDLMNNLQPFPGTWEEYL-----EKFLTGKVAYGSWFTHVKNWWKKKEEHPILFLYYEDM 199
Query: 278 KK 279
K+
Sbjct: 200 KE 201
>1q1q_A SULT2B1A, sulfotransferase family, cytosolic, 2B, member 1 isoform
A; pregnenolone, PAP; HET: A3P NHE; 2.91A {Homo sapiens}
SCOP: c.37.1.5
Length = 350
Score = 27.1 bits (60), Expect = 6.3
Identities = 14/63 (22%), Positives = 22/63 (34%), Gaps = 13/63 (20%)
Query: 224 HLKNQHVRVYKGSIDCMLQTIKHEGFMALYKGFIPTWVRMGPW-------NIIFFITYEQ 276
+ K G+ D L F+ F + + W N FITYE+
Sbjct: 144 YSKIAGQLKDPGTPDQFL-----RDFLKGEVQFGSWFDHIKGWLRMKGKDNF-LFITYEE 197
Query: 277 LKK 279
L++
Sbjct: 198 LQQ 200
>2reo_A Putative sulfotransferase 1C3; sulfate conjugation, PAP, structural
genom consortium, SGC; HET: A3P; 2.65A {Homo sapiens}
PDB: 2h8k_A*
Length = 305
Score = 27.0 bits (60), Expect = 6.8
Identities = 9/63 (14%), Positives = 19/63 (30%), Gaps = 13/63 (20%)
Query: 224 HLKNQHVRVYKGSIDCMLQTIKHEGFMALYKGFIPTWVRMGPW-------NIIFFITYEQ 276
+ +++ E FM+ + + W I ++ YE
Sbjct: 152 FHRMASFMPDPQNLEEFY-----EKFMSGKVVGGSWFDHVKGWWAAKDMHRI-LYLFYED 205
Query: 277 LKK 279
+KK
Sbjct: 206 IKK 208
>2gwh_A Sulfotransferase 1C2; sulfate conjugation, pentachlorophenol, PA
pesticide, structural genomics, structural genomics
consort transferase; HET: A3P PCI; 1.80A {Homo sapiens}
PDB: 2ad1_A*
Length = 298
Score = 26.7 bits (59), Expect = 7.9
Identities = 10/63 (15%), Positives = 19/63 (30%), Gaps = 13/63 (20%)
Query: 224 HLKNQHVRVYKGSIDCMLQTIKHEGFMALYKGFIPTWVRMGPW-------NIIFFITYEQ 276
+ G+ + E F+A + + W I ++ YE
Sbjct: 145 FQRMNKALPAPGTWEEYF-----ETFLAGKVCWGSWHEHVKGWWEAKDKHRI-LYLFYED 198
Query: 277 LKK 279
+KK
Sbjct: 199 MKK 201
>2ftc_K 39S ribosomal protein L19, mitochondrial; mitochondrial ribosome,
large ribosomal subunit, ribosomal R ribosome; 12.10A
{Bos taurus}
Length = 98
Score = 25.6 bits (57), Expect = 8.0
Identities = 1/18 (5%), Positives = 8/18 (44%)
Query: 118 NPTDVVKVHMQVVHSNRR 135
+++V +++ +
Sbjct: 5 YVGSILRVTTADPYASGK 22
>1iay_A ACC synthase 2, 1-aminocyclopropane-1-carboxylate synthase 2;
protein-cofactor-inhibitor complex, V6-dependent enzyme,
LYA; HET: PLP AVG; 2.70A {Solanum lycopersicum} SCOP:
c.67.1.4 PDB: 1iax_A*
Length = 428
Score = 26.9 bits (60), Expect = 9.4
Identities = 14/90 (15%), Positives = 25/90 (27%), Gaps = 14/90 (15%)
Query: 45 MTDVLLQ-ISRKDGFWALYSGISPAVIRQATYGTIKFGTYYSLKNFIVEKTGQ------- 96
D++ I R GI + G + I + +
Sbjct: 49 CLDLIEDWIKRNPKGSICSEGIKS--FKAIANFQDYHGLP-EFRKAIAKFMEKTRGGRVR 105
Query: 97 ---EDIVVNVGCAVAAGILASSIANPTDVV 123
E +V+ G A + +A+P D
Sbjct: 106 FDPERVVMAGGATGANETIIFCLADPGDAF 135
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.323 0.137 0.410
Gapped
Lambda K H
0.267 0.0771 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,260,354
Number of extensions: 251518
Number of successful extensions: 520
Number of sequences better than 10.0: 1
Number of HSP's gapped: 505
Number of HSP's successfully gapped: 39
Length of query: 281
Length of database: 6,701,793
Length adjustment: 92
Effective length of query: 189
Effective length of database: 4,133,061
Effective search space: 781148529
Effective search space used: 781148529
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 57 (25.7 bits)