RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy16566
         (281 letters)



>d1okca_ f.42.1.1 (A:) ADP,ATP carrier protein {Cow (Bos taurus),
           heart isoform t1 [TaxId: 9913]}
          Length = 292

 Score = 86.7 bits (213), Expect = 2e-20
 Identities = 48/265 (18%), Positives = 85/265 (32%), Gaps = 13/265 (4%)

Query: 23  KTRLQVQGQQLDQQYAKLKYRGMTDVLLQISRKDGFWALYSGISPAVIRQATYGTIKFGT 82
           K  LQVQ         K +Y+G+ D +++I ++ GF + + G    VIR      + F  
Sbjct: 31  KLLLQVQHASKQISAEK-QYKGIIDCVVRIPKEQGFLSFWRGNLANVIRYFPTQALNFAF 89

Query: 83  YYSLKNFIV-----EKTGQEDIVVNVGCAVAAGILASSIANPTDVVKVHMQV----VHSN 133
               K   +      K        N+    AAG  +     P D  +  +        + 
Sbjct: 90  KDKYKQIFLGGVDRHKQFWRYFAGNLASGGAAGATSLCFVYPLDFARTRLAADVGKGAAQ 149

Query: 134 RRGWSLLVKFGTYYSLKNFI-VEKTGQEDIVVNVGCAVAAGILASSIANPTDVVKVRMQV 192
           R    L       +       + +     +   +    A   +  +        K    +
Sbjct: 150 REFTGLGNCITKIFKSDGLRGLYQGFNVSVQGIIIYRAAYFGVYDTAKGMLPDPKNVHII 209

Query: 193 VHSNSLVTCLHDIYTKEGVGAFWKTRLMNQKHLKNQHVRVYKGSIDCMLQTIKHEGFMAL 252
           V      T               + R+M Q   K   +  Y G++DC  +  K EG  A 
Sbjct: 210 VSWMIAQTVTAVAGLVSYPFDTVRRRMMMQSGRKGADIM-YTGTVDCWRKIAKDEGPKAF 268

Query: 253 YKGFIPTWVRMGPWNIIFFITYEQL 277
           +KG     +R G       + Y+++
Sbjct: 269 FKGAWSNVLR-GMGGAFVLVLYDEI 292



 Score = 46.6 bits (109), Expect = 1e-06
 Identities = 31/186 (16%), Positives = 64/186 (34%), Gaps = 14/186 (7%)

Query: 109 AGILASSIANPTDVVKVHMQVVHSNRRGWSLLVKFGTYYSLKNFIVE---KTGQEDIVVN 165
           A  ++ +   P + VK+ +QV H++++  +     G    +     E    +     + N
Sbjct: 16  AAAISKTAVAPIERVKLLLQVQHASKQISAEKQYKGIIDCVVRIPKEQGFLSFWRGNLAN 75

Query: 166 VGCAVAAGILASSIANPTDVVKVRMQVVHSNSLVTCLHDIYTKEGVGAF----------W 215
           V        L  +  +    + +     H         ++ +    GA            
Sbjct: 76  VIRYFPTQALNFAFKDKYKQIFLGGVDRHKQFWRYFAGNLASGGAAGATSLCFVYPLDFA 135

Query: 216 KTRLMNQKHLKNQHVRVYKGSIDCMLQTIKHEGFMALYKGFIPTWVRMGPWNIIFFITYE 275
           +TRL      K    R + G  +C+ +  K +G   LY+GF  +   +  +   +F  Y+
Sbjct: 136 RTRLAADVG-KGAAQREFTGLGNCITKIFKSDGLRGLYQGFNVSVQGIIIYRAAYFGVYD 194

Query: 276 QLKKHF 281
             K   
Sbjct: 195 TAKGML 200


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.323    0.137    0.410 

Gapped
Lambda     K      H
   0.267   0.0607    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,023,549
Number of extensions: 45711
Number of successful extensions: 102
Number of sequences better than 10.0: 1
Number of HSP's gapped: 96
Number of HSP's successfully gapped: 7
Length of query: 281
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 197
Effective length of database: 1,254,276
Effective search space: 247092372
Effective search space used: 247092372
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 52 (24.1 bits)