BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy16567
(127 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1AOZ|A Chain A, Refined Crystal Structure Of Ascorbate Oxidase At 1.9
Angstroms Resolution
pdb|1AOZ|B Chain B, Refined Crystal Structure Of Ascorbate Oxidase At 1.9
Angstroms Resolution
pdb|1ASO|A Chain A, X-Ray Structures And Mechanistic Implications Of Three
Functional Derivatives Of Ascorbate Oxidase From
Zucchini: Reduced-, Peroxide-, And Azide-Forms
pdb|1ASO|B Chain B, X-Ray Structures And Mechanistic Implications Of Three
Functional Derivatives Of Ascorbate Oxidase From
Zucchini: Reduced-, Peroxide-, And Azide-Forms
pdb|1ASP|A Chain A, X-ray Structures And Mechanistic Implications Of Three
Functional Derivatives Of Ascorbate Oxidase From
Zucchini: Reduced-, Peroxide-, And Azide-forms
pdb|1ASP|B Chain B, X-ray Structures And Mechanistic Implications Of Three
Functional Derivatives Of Ascorbate Oxidase From
Zucchini: Reduced-, Peroxide-, And Azide-forms
pdb|1ASQ|A Chain A, X-Ray Structures And Mechanistic Implications Of Three
Functional Derivatives Of Ascorbate Oxidase From
Zucchini: Reduced-, Peroxide-, And Azide-Forms
pdb|1ASQ|B Chain B, X-Ray Structures And Mechanistic Implications Of Three
Functional Derivatives Of Ascorbate Oxidase From
Zucchini: Reduced-, Peroxide-, And Azide-Forms
Length = 552
Score = 91.3 bits (225), Expect = 1e-19, Method: Composition-based stats.
Identities = 37/87 (42%), Positives = 53/87 (60%)
Query: 25 ERAILSINRQLPGPSIQVCKGDTIIVDVKNHMIDREVTLHWHGVYQKVTPWMDGVPMVTQ 84
E ++ IN Q PGP+I+ GD+++V++ N + V +HWHG+ Q+ TPW DG ++Q
Sbjct: 21 ENIVMGINGQFPGPTIRANAGDSVVVELTNKLHTEGVVIHWHGILQRGTPWADGTASISQ 80
Query: 85 CPIPSSTTFRYKFPAMPSGTFFYHSHV 111
C I TF Y F GTFFYH H+
Sbjct: 81 CAINPGETFFYNFTVDNPGTFFYHGHL 107
>pdb|3SQR|A Chain A, Crystal Structure Of Laccase From Botrytis Aclada At 1.67
A Resolution
Length = 580
Score = 88.2 bits (217), Expect = 1e-18, Method: Composition-based stats.
Identities = 39/92 (42%), Positives = 55/92 (59%)
Query: 19 VTADGFERAILSINRQLPGPSIQVCKGDTIIVDVKNHMIDREVTLHWHGVYQKVTPWMDG 78
+T DG+ R+ ++ N +PGP+I GD +I+ V N++ ++HWHG+ Q + DG
Sbjct: 79 ITPDGYTRSAMTFNGTVPGPAIIADWGDNLIIHVTNNLEHNGTSIHWHGIRQLGSLEYDG 138
Query: 79 VPMVTQCPIPSSTTFRYKFPAMPSGTFFYHSH 110
VP VTQCPI T YKF GT +YHSH
Sbjct: 139 VPGVTQCPIAPGDTLTYKFQVTQYGTTWYHSH 170
>pdb|3V9E|A Chain A, Structure Of The L513m Mutant Of The Laccase From B.aclada
Length = 580
Score = 88.2 bits (217), Expect = 1e-18, Method: Composition-based stats.
Identities = 39/92 (42%), Positives = 55/92 (59%)
Query: 19 VTADGFERAILSINRQLPGPSIQVCKGDTIIVDVKNHMIDREVTLHWHGVYQKVTPWMDG 78
+T DG+ R+ ++ N +PGP+I GD +I+ V N++ ++HWHG+ Q + DG
Sbjct: 79 ITPDGYTRSAMTFNGTVPGPAIIADWGDNLIIHVTNNLEHNGTSIHWHGIRQLGSLEYDG 138
Query: 79 VPMVTQCPIPSSTTFRYKFPAMPSGTFFYHSH 110
VP VTQCPI T YKF GT +YHSH
Sbjct: 139 VPGVTQCPIAPGDTLTYKFQVTQYGTTWYHSH 170
>pdb|3KW7|A Chain A, Crystal Structure Of Lacb From Trametes Sp. Ah28-2
pdb|3KW7|B Chain B, Crystal Structure Of Lacb From Trametes Sp. Ah28-2
Length = 502
Score = 87.4 bits (215), Expect = 2e-18, Method: Composition-based stats.
Identities = 45/105 (42%), Positives = 62/105 (59%), Gaps = 8/105 (7%)
Query: 19 VTADGFERAILSINRQLPGPSIQVCKGDTIIVDVKNHMID----REVTLHWHGVYQKVTP 74
VT DGF RA + N PGP I KGD ++V +++ + + T+HWHG++Q T
Sbjct: 15 VTPDGFTRAAVVANGVFPGPLITGNKGDNFQINVIDNLTNATMLKTTTIHWHGLFQHGTN 74
Query: 75 WMDGVPMVTQCPIPSSTTFRYKFPAMP--SGTFFYHSHVDRRPYC 117
W DG V QCPI S +F Y F +P +GTF+YHSH+ + YC
Sbjct: 75 WADGPAFVNQCPIASGNSFLYDF-TVPDQAGTFWYHSHLSTQ-YC 117
>pdb|2QT6|A Chain A, Crystal Structure Determination Of A Blue Laccase From
Lentinus Tigrinus
pdb|2QT6|B Chain B, Crystal Structure Determination Of A Blue Laccase From
Lentinus Tigrinus
Length = 498
Score = 85.9 bits (211), Expect = 5e-18, Method: Composition-based stats.
Identities = 42/105 (40%), Positives = 60/105 (57%), Gaps = 8/105 (7%)
Query: 19 VTADGFERAILSINRQLPGPSIQVCKGDT----IIVDVKNHMIDREVTLHWHGVYQKVTP 74
+ DGFERA + +N P P I GD ++ + NH + + ++HWHG +QK T
Sbjct: 15 IVPDGFERAAIVVNNVFPAPLITGNMGDNFQLNLVNQMTNHTMLKTTSIHWHGFFQKGTN 74
Query: 75 WMDGVPMVTQCPIPSSTTFRYKFPAMP--SGTFFYHSHVDRRPYC 117
W DG + QCPI S +F Y F +P +GTF+YHSH+ + YC
Sbjct: 75 WADGPAFINQCPIASGNSFLYDF-QVPGQAGTFWYHSHLSTQ-YC 117
>pdb|1KYA|A Chain A, Active Laccase From Trametes Versicolor Complexed With
2,5-Xylidine
pdb|1KYA|B Chain B, Active Laccase From Trametes Versicolor Complexed With
2,5-Xylidine
pdb|1KYA|C Chain C, Active Laccase From Trametes Versicolor Complexed With
2,5-Xylidine
pdb|1KYA|D Chain D, Active Laccase From Trametes Versicolor Complexed With
2,5-Xylidine
Length = 499
Score = 85.9 bits (211), Expect = 6e-18, Method: Composition-based stats.
Identities = 43/105 (40%), Positives = 61/105 (58%), Gaps = 8/105 (7%)
Query: 19 VTADGFERAILSINRQLPGPSIQVCKGD----TIIVDVKNHMIDREVTLHWHGVYQKVTP 74
V+ DGF R + +N PGP I GD +I ++ NH + + ++HWHG +QK T
Sbjct: 15 VSPDGFSRQAVVVNGGTPGPLITGNMGDRFQLNVIDNLTNHTMLKSTSIHWHGFFQKGTN 74
Query: 75 WMDGVPMVTQCPIPSSTTFRYKFPAMP--SGTFFYHSHVDRRPYC 117
W DG + QCPI S +F Y F +P +GTF+YHSH+ + YC
Sbjct: 75 WADGPAFINQCPISSGHSFLYDF-QVPDQAGTFWYHSHLSTQ-YC 117
>pdb|2HZH|A Chain A, Crystal Structure Of Laccase From Coriolus Zonatus At 2.6
A Resolution
Length = 499
Score = 85.5 bits (210), Expect = 8e-18, Method: Composition-based stats.
Identities = 42/104 (40%), Positives = 61/104 (58%), Gaps = 6/104 (5%)
Query: 19 VTADGFERAILSINRQLPGPSIQVCKGDTIIVDVKNHMID----REVTLHWHGVYQKVTP 74
V ADG R + +N PGP I KGD ++V N++ + + ++HWHG +QK T
Sbjct: 15 VAADGHSRDAVVVNGGTPGPLITGNKGDQFQLNVINNLTNFTMLKSTSVHWHGFFQKGTN 74
Query: 75 WMDGVPMVTQCPIPSSTTFRYKFPA-MPSGTFFYHSHVDRRPYC 117
W DG V QCPI + ++F Y F + +GTF+YHSH+ + YC
Sbjct: 75 WADGPAFVNQCPIAAGSSFLYDFSTPIQAGTFWYHSHLSTQ-YC 117
>pdb|4A2F|A Chain A, Coriolopsis Gallica Laccase Collected At 12.65 Kev
Length = 497
Score = 84.3 bits (207), Expect = 1e-17, Method: Composition-based stats.
Identities = 43/107 (40%), Positives = 60/107 (56%), Gaps = 8/107 (7%)
Query: 17 GCVTADGFERAILSINRQLPGPSIQVCKGD----TIIVDVKNHMIDREVTLHWHGVYQKV 72
G V+ DGF R + +N P P I KGD +I ++ NH + + ++HWHG +Q
Sbjct: 13 GAVSPDGFSRQAILVNDVFPSPLITGNKGDRFQLNVIDNMTNHTMLKSTSIHWHGFFQHG 72
Query: 73 TPWMDGVPMVTQCPIPSSTTFRYKFPAMP--SGTFFYHSHVDRRPYC 117
T W DG V QCPI + F Y F +P +GTF+YHSH+ + YC
Sbjct: 73 TNWADGPAFVNQCPISTGHAFLYDF-QVPDQAGTFWYHSHLSTQ-YC 117
>pdb|4A2D|A Chain A, Coriolopsis Gallica Laccase T2 Copper Depleted At Ph 4.5
pdb|4A2E|A Chain A, Crystal Structure Of A Coriolopsis Gallica Laccase At 1.7
A Resolution Ph 5.5
pdb|4A2H|A Chain A, Crystal Structure Of Laccase From Coriolopsis Gallica Ph
7.0
pdb|4A2G|A Chain A, Coriolopsis Gallica Laccase Collected At 8.98 Kev
Length = 496
Score = 84.3 bits (207), Expect = 1e-17, Method: Composition-based stats.
Identities = 43/107 (40%), Positives = 60/107 (56%), Gaps = 8/107 (7%)
Query: 17 GCVTADGFERAILSINRQLPGPSIQVCKGD----TIIVDVKNHMIDREVTLHWHGVYQKV 72
G V+ DGF R + +N P P I KGD +I ++ NH + + ++HWHG +Q
Sbjct: 13 GAVSPDGFSRQAILVNDVFPSPLITGNKGDRFQLNVIDNMTNHTMLKSTSIHWHGFFQHG 72
Query: 73 TPWMDGVPMVTQCPIPSSTTFRYKFPAMP--SGTFFYHSHVDRRPYC 117
T W DG V QCPI + F Y F +P +GTF+YHSH+ + YC
Sbjct: 73 TNWADGPAFVNQCPISTGHAFLYDF-QVPDQAGTFWYHSHLSTQ-YC 117
>pdb|2HRG|A Chain A, Crystal Structure Of Blue Laccase From Trametes Trogii
Complexed With P-Methylbenzoate
pdb|2HRH|A Chain A, Crystal Strucure Of Blue Laccase From Trametes Trogii
Length = 496
Score = 84.3 bits (207), Expect = 2e-17, Method: Composition-based stats.
Identities = 43/107 (40%), Positives = 60/107 (56%), Gaps = 8/107 (7%)
Query: 17 GCVTADGFERAILSINRQLPGPSIQVCKGD----TIIVDVKNHMIDREVTLHWHGVYQKV 72
G V+ DGF R + +N P P I KGD +I ++ NH + + ++HWHG +Q
Sbjct: 13 GAVSPDGFSRQAILVNDVFPSPLITGNKGDRFQLNVIDNMTNHTMLKSTSIHWHGFFQHG 72
Query: 73 TPWMDGVPMVTQCPIPSSTTFRYKFPAMP--SGTFFYHSHVDRRPYC 117
T W DG V QCPI + F Y F +P +GTF+YHSH+ + YC
Sbjct: 73 TNWADGPAFVNQCPISTGHAFLYDF-QVPDQAGTFWYHSHLSTQ-YC 117
>pdb|1ZPU|A Chain A, Crystal Structure Of Fet3p, A Multicopper Oxidase That
Functions In Iron Import
pdb|1ZPU|B Chain B, Crystal Structure Of Fet3p, A Multicopper Oxidase That
Functions In Iron Import
pdb|1ZPU|C Chain C, Crystal Structure Of Fet3p, A Multicopper Oxidase That
Functions In Iron Import
pdb|1ZPU|D Chain D, Crystal Structure Of Fet3p, A Multicopper Oxidase That
Functions In Iron Import
pdb|1ZPU|E Chain E, Crystal Structure Of Fet3p, A Multicopper Oxidase That
Functions In Iron Import
pdb|1ZPU|F Chain F, Crystal Structure Of Fet3p, A Multicopper Oxidase That
Functions In Iron Import
Length = 534
Score = 83.2 bits (204), Expect = 4e-17, Method: Composition-based stats.
Identities = 39/93 (41%), Positives = 56/93 (60%), Gaps = 2/93 (2%)
Query: 22 DGFE-RAILSINRQLPGPSIQVCKGDTIIVDVKNHMIDREVTLHWHGVYQKVTPWMDGVP 80
DG + R +++ N Q P P I V KGD + + + N M + ++H+HG++Q T MDGVP
Sbjct: 17 DGLKSRPVITCNGQFPWPDITVNKGDRVQIYLTNGMNNTNTSMHFHGLFQNGTASMDGVP 76
Query: 81 MVTQCPIPSSTTFRYKFPA-MPSGTFFYHSHVD 112
+TQCPI +T Y F GT++YHSH D
Sbjct: 77 FLTQCPIAPGSTMLYNFTVDYNVGTYWYHSHTD 109
>pdb|1HFU|A Chain A, Type-2 Cu-Depleted Laccase From Coprinus Cinereus At 1.68
A Resolution
Length = 503
Score = 81.3 bits (199), Expect = 1e-16, Method: Composition-based stats.
Identities = 44/104 (42%), Positives = 61/104 (58%), Gaps = 7/104 (6%)
Query: 19 VTADGFERAILSINRQLPGPSIQVCKGDT----IIVDVKNHMIDREVTLHWHGVYQKVTP 74
V+ DGF RA + +N + GP I+ K D ++ D+ N + R ++HWHG++Q+ T
Sbjct: 16 VSPDGFTRAGILVN-GVHGPLIRGGKNDNFELNVVNDLDNPTMLRPTSIHWHGLFQRGTN 74
Query: 75 WMDGVPMVTQCPIPSSTTFRYKF-PAMPSGTFFYHSHVDRRPYC 117
W DG V QCPI F YKF PA +GTF+YHSH + YC
Sbjct: 75 WADGADGVNQCPISPGHAFLYKFTPAGHAGTFWYHSHFGTQ-YC 117
>pdb|1A65|A Chain A, Type-2 Cu-depleted Laccase From Coprinus Cinereus
Length = 504
Score = 81.3 bits (199), Expect = 1e-16, Method: Composition-based stats.
Identities = 44/104 (42%), Positives = 61/104 (58%), Gaps = 7/104 (6%)
Query: 19 VTADGFERAILSINRQLPGPSIQVCKGDT----IIVDVKNHMIDREVTLHWHGVYQKVTP 74
V+ DGF RA + +N + GP I+ K D ++ D+ N + R ++HWHG++Q+ T
Sbjct: 16 VSPDGFTRAGILVN-GVHGPLIRGGKNDNFELNVVNDLDNPTMLRPTSIHWHGLFQRGTN 74
Query: 75 WMDGVPMVTQCPIPSSTTFRYKF-PAMPSGTFFYHSHVDRRPYC 117
W DG V QCPI F YKF PA +GTF+YHSH + YC
Sbjct: 75 WADGADGVNQCPISPGHAFLYKFTPAGHAGTFWYHSHFGTQ-YC 117
>pdb|2XYB|A Chain A, Crystal Structure Of A Fully Functional Laccase From The
Ligninolytic Fungus Pycnoporus Cinnabarinus
Length = 497
Score = 80.9 bits (198), Expect = 2e-16, Method: Composition-based stats.
Identities = 43/105 (40%), Positives = 60/105 (57%), Gaps = 8/105 (7%)
Query: 19 VTADGFERAILSINRQLPGPSIQVCKGD----TIIVDVKNHMIDREVTLHWHGVYQKVTP 74
V+ DGF R + +N P P I KGD +I + NH + + ++HWHG +Q+ T
Sbjct: 15 VSPDGFAREAVVVNGITPAPLITGNKGDRFQLNVIDQLTNHTMLKTSSIHWHGFFQQGTN 74
Query: 75 WMDGVPMVTQCPIPSSTTFRYKFPAMP--SGTFFYHSHVDRRPYC 117
W DG V QCPI S +F Y F +P +GTF+YHSH+ + YC
Sbjct: 75 WADGPAFVNQCPIASGHSFLYDF-QVPDQAGTFWYHSHLSTQ-YC 117
>pdb|1GYC|A Chain A, Crystal Structure Determination At Room Temperature Of A
Laccase From Trametes Versicolor In Its Oxidised Form
Containing A Full Complement Of Copper Ions
Length = 499
Score = 80.1 bits (196), Expect = 3e-16, Method: Composition-based stats.
Identities = 43/105 (40%), Positives = 59/105 (56%), Gaps = 8/105 (7%)
Query: 19 VTADGFERAILSINRQLPGPSIQVCKGDTIIVDV----KNHMIDREVTLHWHGVYQKVTP 74
V+ DGF R + +N P P I KGD ++V NH + + ++HWHG +Q T
Sbjct: 15 VSPDGFLRDAIVVNGVFPSPLITGKKGDRFQLNVVDTLTNHTMLKSTSIHWHGFFQAGTN 74
Query: 75 WMDGVPMVTQCPIPSSTTFRYKFPAMP--SGTFFYHSHVDRRPYC 117
W DG V QCPI S +F Y F +P +GTF+YHSH+ + YC
Sbjct: 75 WADGPAFVNQCPIASGHSFLYDF-HVPDQAGTFWYHSHLSTQ-YC 117
>pdb|3FPX|A Chain A, Native Fungus Laccase From Trametes Hirsuta
pdb|3V9C|A Chain A, Type-2 Cu-Depleted Fungus Laccase From Trametes Hirsuta At
Low Dose Of Ionization Radiation
Length = 499
Score = 79.7 bits (195), Expect = 4e-16, Method: Composition-based stats.
Identities = 40/105 (38%), Positives = 59/105 (56%), Gaps = 8/105 (7%)
Query: 19 VTADGFERAILSINRQLPGPSIQVCKGD----TIIVDVKNHMIDREVTLHWHGVYQKVTP 74
V+ DGF R + +N PGP + GD +I ++ NH + + ++HWHG +Q T
Sbjct: 15 VSPDGFSRQAVVVNGVTPGPLVAGNIGDRFQLNVIDNLTNHTMLKSTSIHWHGFFQHGTN 74
Query: 75 WMDGVPMVTQCPIPSSTTFRYKFPAMP--SGTFFYHSHVDRRPYC 117
W DG + QCPI +F Y F +P +GTF+YHSH+ + YC
Sbjct: 75 WADGPAFINQCPISPGHSFLYDF-QVPDQAGTFWYHSHLSTQ-YC 117
>pdb|3PXL|A Chain A, Type-2 Cu-Depleted Fungus Laccase From Trametes Hirsuta
Length = 499
Score = 79.3 bits (194), Expect = 4e-16, Method: Composition-based stats.
Identities = 40/105 (38%), Positives = 59/105 (56%), Gaps = 8/105 (7%)
Query: 19 VTADGFERAILSINRQLPGPSIQVCKGD----TIIVDVKNHMIDREVTLHWHGVYQKVTP 74
V+ DGF R + +N PGP + GD +I ++ NH + + ++HWHG +Q T
Sbjct: 15 VSPDGFSRQAVVVNGVTPGPLVAGNIGDRFQLNVIDNLTNHTMLKSTSIHWHGFFQHGTN 74
Query: 75 WMDGVPMVTQCPIPSSTTFRYKFPAMP--SGTFFYHSHVDRRPYC 117
W DG + QCPI +F Y F +P +GTF+YHSH+ + YC
Sbjct: 75 WADGPAFINQCPISPGHSFLYDF-QVPDQAGTFWYHSHLSTQ-YC 117
>pdb|2H5U|A Chain A, Crystal Structure Of Laccase From Cerrena Maxima At 1.9a
Resolution
Length = 499
Score = 78.2 bits (191), Expect = 1e-15, Method: Composition-based stats.
Identities = 38/103 (36%), Positives = 57/103 (55%), Gaps = 6/103 (5%)
Query: 20 TADGFERAILSINRQLPGPSIQVCKGD----TIIVDVKNHMIDREVTLHWHGVYQKVTPW 75
+ DGF R + +N PGP + GD +I ++ NH + + ++HWHG +Q+ T W
Sbjct: 16 SPDGFSRQAVVVNGVTPGPLVAGNIGDRFQLNVIDNLTNHTMLKTTSVHWHGFFQQGTNW 75
Query: 76 MDGVPMVTQCPIPSSTTFRYKFPA-MPSGTFFYHSHVDRRPYC 117
DG + QCPI +F Y F +GTF+YHSH+ + YC
Sbjct: 76 ADGPAFINQCPISPGHSFLYDFQVPNQAGTFWYHSHLSTQ-YC 117
>pdb|3DIV|A Chain A, Crystal Structure Of Laccase From Cerrena Maxima At 1.76a
Resolution
Length = 499
Score = 78.2 bits (191), Expect = 1e-15, Method: Composition-based stats.
Identities = 38/103 (36%), Positives = 57/103 (55%), Gaps = 6/103 (5%)
Query: 20 TADGFERAILSINRQLPGPSIQVCKGD----TIIVDVKNHMIDREVTLHWHGVYQKVTPW 75
+ DGF R + +N PGP + GD +I ++ NH + + ++HWHG +Q+ T W
Sbjct: 16 SPDGFSRQAVVVNGVTPGPLVAGNIGDRFQLNVIDNLTNHTMLKTTSVHWHGFFQQGTNW 75
Query: 76 MDGVPMVTQCPIPSSTTFRYKFPA-MPSGTFFYHSHVDRRPYC 117
DG + QCPI +F Y F +GTF+YHSH+ + YC
Sbjct: 76 ADGPAFINQCPISPGHSFLYDFQVPNQAGTFWYHSHLSTQ-YC 117
>pdb|3T6V|A Chain A, Crystal Structure Of Laccase From Steccherinum Ochraceum
pdb|3T6V|B Chain B, Crystal Structure Of Laccase From Steccherinum Ochraceum
pdb|3T6V|C Chain C, Crystal Structure Of Laccase From Steccherinum Ochraceum
pdb|3T6W|A Chain A, Crystal Structure Of Steccherinum Ochraceum Laccase
Obtained By Multi- Crystals Composite Data Collection
Technique (10% Dose)
pdb|3T6W|B Chain B, Crystal Structure Of Steccherinum Ochraceum Laccase
Obtained By Multi- Crystals Composite Data Collection
Technique (10% Dose)
pdb|3T6W|C Chain C, Crystal Structure Of Steccherinum Ochraceum Laccase
Obtained By Multi- Crystals Composite Data Collection
Technique (10% Dose)
pdb|3T6X|A Chain A, Crystal Structure Of Steccherinum Ochraceum Laccase
Obtained By Multi- Crystals Composite Data Collection
Technique (20% Dose)
pdb|3T6X|B Chain B, Crystal Structure Of Steccherinum Ochraceum Laccase
Obtained By Multi- Crystals Composite Data Collection
Technique (20% Dose)
pdb|3T6X|C Chain C, Crystal Structure Of Steccherinum Ochraceum Laccase
Obtained By Multi- Crystals Composite Data Collection
Technique (20% Dose)
pdb|3T6Z|A Chain A, Crystal Structure Of Steccherinum Ochraceum Laccase
Obtained By Multi- Crystals Composite Data Collection
Technique (60% Dose)
pdb|3T6Z|B Chain B, Crystal Structure Of Steccherinum Ochraceum Laccase
Obtained By Multi- Crystals Composite Data Collection
Technique (60% Dose)
pdb|3T6Z|C Chain C, Crystal Structure Of Steccherinum Ochraceum Laccase
Obtained By Multi- Crystals Composite Data Collection
Technique (60% Dose)
pdb|3T71|A Chain A, Crystal Structure Of Steccherinum Ochraceum Laccase
Obtained By Multi- Crystals Composite Data Collection
Technique (90% Dose)
pdb|3T71|B Chain B, Crystal Structure Of Steccherinum Ochraceum Laccase
Obtained By Multi- Crystals Composite Data Collection
Technique (90% Dose)
pdb|3T71|C Chain C, Crystal Structure Of Steccherinum Ochraceum Laccase
Obtained By Multi- Crystals Composite Data Collection
Technique (90% Dose)
Length = 495
Score = 76.6 bits (187), Expect = 3e-15, Method: Composition-based stats.
Identities = 40/105 (38%), Positives = 57/105 (54%), Gaps = 8/105 (7%)
Query: 19 VTADGFERAILSINRQLPGPSIQVCKGDTIIVDVKNHMID----REVTLHWHGVYQKVTP 74
+ DGF R ++ PGP I GD + N +I+ + ++HWHG +QK T
Sbjct: 16 IVPDGFVRPAVNAGGTFPGPVIAGNVGDNFQIVTFNQLIECSMLVDTSIHWHGEFQKGTN 75
Query: 75 WMDGVPMVTQCPIPSSTTFRYKF--PAMPSGTFFYHSHVDRRPYC 117
W DG +TQCPI +F Y F P M +GT++YHSH+ + YC
Sbjct: 76 WADGPAFITQCPIIVGNSFSYNFNVPGM-AGTYWYHSHLTTQ-YC 118
>pdb|3G5W|A Chain A, Crystal Structure Of Blue Copper Oxidase From Nitrosomonas
Europaea
pdb|3G5W|B Chain B, Crystal Structure Of Blue Copper Oxidase From Nitrosomonas
Europaea
pdb|3G5W|C Chain C, Crystal Structure Of Blue Copper Oxidase From Nitrosomonas
Europaea
pdb|3G5W|D Chain D, Crystal Structure Of Blue Copper Oxidase From Nitrosomonas
Europaea
pdb|3G5W|E Chain E, Crystal Structure Of Blue Copper Oxidase From Nitrosomonas
Europaea
pdb|3G5W|F Chain F, Crystal Structure Of Blue Copper Oxidase From Nitrosomonas
Europaea
Length = 318
Score = 75.5 bits (184), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 39/84 (46%), Positives = 50/84 (59%), Gaps = 1/84 (1%)
Query: 29 LSINRQLPGPSIQVCKGDTIIVDVKNHMIDREVTLHWHGVYQKVTPWMDGVPMVTQCPIP 88
+ N Q+P P I V +GD + V+V N M T+HWHG+ Q+ T DGVP TQ I
Sbjct: 25 FAFNGQVPAPLIHVMEGDDVTVNVTN-MTTLPHTIHWHGMLQRGTWQSDGVPHATQHAIE 83
Query: 89 SSTTFRYKFPAMPSGTFFYHSHVD 112
TF YKF A P+GT +YH HV+
Sbjct: 84 PGDTFTYKFKAEPAGTMWYHCHVN 107
>pdb|1GW0|A Chain A, Crystal Structure Of Laccase From Melanocarpus Albomyces
In Four Copper Form
pdb|1GW0|B Chain B, Crystal Structure Of Laccase From Melanocarpus Albomyces
In Four Copper Form
pdb|2IH8|A Chain A, A Low-dose Crystal Structure Of A Recombinant Melanocarpus
Albomyces Laccase
pdb|2IH8|B Chain B, A Low-dose Crystal Structure Of A Recombinant Melanocarpus
Albomyces Laccase
pdb|2IH9|A Chain A, A High-Dose Crystal Structure Of A Recombinant
Melanocarbus Albomyces Laccase
pdb|2IH9|B Chain B, A High-Dose Crystal Structure Of A Recombinant
Melanocarbus Albomyces Laccase
pdb|3FU7|B Chain B, Melanocarpus Albomyces Laccase Crystal Soaked (4 Sec) With
2,6- Dimethoxyphenol
pdb|3FU9|A Chain A, Melanocarpus Albomyces Laccase Crystal Soaked (20 Min)
With 2,6- Dimethoxyphenol
pdb|3FU9|B Chain B, Melanocarpus Albomyces Laccase Crystal Soaked (20 Min)
With 2,6- Dimethoxyphenol
pdb|3QPK|A Chain A, Probing Oxygen Channels In Melanocarpus Albomyces Laccase
pdb|3QPK|B Chain B, Probing Oxygen Channels In Melanocarpus Albomyces Laccase
Length = 559
Score = 69.7 bits (169), Expect = 4e-13, Method: Composition-based stats.
Identities = 35/84 (41%), Positives = 51/84 (60%), Gaps = 1/84 (1%)
Query: 28 ILSINRQLPGPSIQVCKGDTIIVDVKNHMIDREVTLHWHGVYQKVTPWMDGVPMVTQCPI 87
++ IN + GP+I GDT+ V V N+++ ++HWHG++QK T DG VT+CPI
Sbjct: 57 VMLINGNIMGPNIVANWGDTVEVTVINNLVTNGTSIHWHGIHQKDTNLHDGANGVTECPI 116
Query: 88 PSSTTFR-YKFPAMPSGTFFYHSH 110
P R Y++ A GT +YHSH
Sbjct: 117 PPKGGQRTYRWRARQYGTSWYHSH 140
>pdb|3DKH|A Chain A, L559a Mutant Of Melanocarpus Albomyces Laccase
pdb|3DKH|B Chain B, L559a Mutant Of Melanocarpus Albomyces Laccase
Length = 559
Score = 69.7 bits (169), Expect = 4e-13, Method: Composition-based stats.
Identities = 35/84 (41%), Positives = 51/84 (60%), Gaps = 1/84 (1%)
Query: 28 ILSINRQLPGPSIQVCKGDTIIVDVKNHMIDREVTLHWHGVYQKVTPWMDGVPMVTQCPI 87
++ IN + GP+I GDT+ V V N+++ ++HWHG++QK T DG VT+CPI
Sbjct: 57 VMLINGNIMGPNIVANWGDTVEVTVINNLVTNGTSIHWHGIHQKDTNLHDGANGVTECPI 116
Query: 88 PSSTTFR-YKFPAMPSGTFFYHSH 110
P R Y++ A GT +YHSH
Sbjct: 117 PPKGGQRTYRWRARQYGTSWYHSH 140
>pdb|2Q9O|A Chain A, Near-Atomic Resolution Structure Of A Melanocarpus
Albomyces Laccase
pdb|2Q9O|B Chain B, Near-Atomic Resolution Structure Of A Melanocarpus
Albomyces Laccase
pdb|3FU7|A Chain A, Melanocarpus Albomyces Laccase Crystal Soaked (4 Sec) With
2,6- Dimethoxyphenol
pdb|3FU8|A Chain A, Melanocarpus Albomyces Laccase Crystal Soaked (10 Sec)
With 2,6- Dimethoxyphenol
pdb|3FU8|B Chain B, Melanocarpus Albomyces Laccase Crystal Soaked (10 Sec)
With 2,6- Dimethoxyphenol
Length = 559
Score = 68.6 bits (166), Expect = 1e-12, Method: Composition-based stats.
Identities = 35/84 (41%), Positives = 50/84 (59%), Gaps = 1/84 (1%)
Query: 28 ILSINRQLPGPSIQVCKGDTIIVDVKNHMIDREVTLHWHGVYQKVTPWMDGVPMVTQCPI 87
++ IN + GP+I GDT+ V V N+++ ++HWHG+ QK T DG VT+CPI
Sbjct: 57 VMLINGNIMGPNIVANWGDTVEVTVINNLVTNGTSIHWHGIXQKDTNLHDGANGVTECPI 116
Query: 88 PSSTTFR-YKFPAMPSGTFFYHSH 110
P R Y++ A GT +YHSH
Sbjct: 117 PPKGGQRTYRWRARQYGTSWYHSH 140
>pdb|3PPS|A Chain A, Crystal Structure Of An Ascomycete Fungal Laccase From
Thielavia Arenaria
pdb|3PPS|B Chain B, Crystal Structure Of An Ascomycete Fungal Laccase From
Thielavia Arenaria
pdb|3PPS|C Chain C, Crystal Structure Of An Ascomycete Fungal Laccase From
Thielavia Arenaria
pdb|3PPS|D Chain D, Crystal Structure Of An Ascomycete Fungal Laccase From
Thielavia Arenaria
Length = 604
Score = 65.5 bits (158), Expect = 8e-12, Method: Composition-based stats.
Identities = 35/98 (35%), Positives = 55/98 (56%), Gaps = 2/98 (2%)
Query: 15 RKGCVTADG-FERAILSINRQLPGPSIQVCKGDTIIVDVKNHMIDREVTLHWHGVYQKVT 73
++ + DG + ++ +N ++ GP+I+ GD I V V N++ ++HWHG+ Q
Sbjct: 84 KENWIGPDGVLKNVVMLVNDKIIGPTIRANWGDNIEVTVINNLKTNGTSMHWHGLRQLGN 143
Query: 74 PWMDGVPMVTQCPIPSSTTFR-YKFPAMPSGTFFYHSH 110
+ DG VT+CPIP + YKF A GT +YHSH
Sbjct: 144 VFNDGANGVTECPIPPKGGRKTYKFRATQYGTSWYHSH 181
>pdb|1V10|A Chain A, Structure Of Rigidoporus Lignosus Laccase From
Hemihedrally Twinned Crystals
Length = 521
Score = 58.5 bits (140), Expect = 8e-10, Method: Composition-based stats.
Identities = 30/78 (38%), Positives = 45/78 (57%), Gaps = 8/78 (10%)
Query: 46 DTIIVDVKNHMID----REVTLHWHGVYQKVTPWMDGVPMVTQCPIPSSTTFRYKFPAMP 101
D ++V + + D R ++HWHG +Q T MDG V QCPI + +F Y F +P
Sbjct: 63 DRFQINVIDQLTDANMRRATSIHWHGFFQAGTTEMDGPAFVNQCPIIPNESFVYDF-VVP 121
Query: 102 --SGTFFYHSHVDRRPYC 117
+GT++YHSH+ + YC
Sbjct: 122 GQAGTYWYHSHLSTQ-YC 138
>pdb|3GDC|A Chain A, Crystal Structure Of Multicopper Oxidase
pdb|3GDC|B Chain B, Crystal Structure Of Multicopper Oxidase
pdb|3GDC|C Chain C, Crystal Structure Of Multicopper Oxidase
Length = 288
Score = 53.9 bits (128), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 48/98 (48%), Gaps = 6/98 (6%)
Query: 30 SINRQLPGPSIQVCKGDTIIVDVKNHMIDREVTLHWHGVYQKVTPWMDGVPMVTQCPIPS 89
S N ++PGP++ +GD + + N T+H+HGV++ MDG P + I
Sbjct: 58 SYNGRIPGPTLWAREGDALRIHFTNAGAHPH-TIHFHGVHRAT---MDGTPGIGAGSIAP 113
Query: 90 STTFRYKFPAMPSGTFFYHSHVDRRPYCPEIEEKKKTG 127
+F Y+F A P GT YH H + P P I + G
Sbjct: 114 GQSFTYEFDATPFGTHLYHCH--QSPLAPHIAKGLYGG 149
>pdb|3ZX1|A Chain A, Multicopper Oxidase From Campylobacter Jejuni: A
Metallo-Oxidase
Length = 481
Score = 53.5 bits (127), Expect = 3e-08, Method: Composition-based stats.
Identities = 30/83 (36%), Positives = 45/83 (54%), Gaps = 8/83 (9%)
Query: 30 SINRQLPGPSIQVCKGDTIIVDVKNHMIDREVTLHWHGVYQKVTPWMDGVPMVTQCPIPS 89
+ N +P P I+V +GD + + VKN + T+HWHGV V P DG P PI +
Sbjct: 74 TYNGLVPAPKIEVFEGDKLEILVKNKL-KEATTIHWHGV--PVPPDQDGSP---HDPILA 127
Query: 90 ST--TFRYKFPAMPSGTFFYHSH 110
+R++ P +GT++YH H
Sbjct: 128 GEERIYRFEIPQDSAGTYWYHPH 150
>pdb|2XU9|A Chain A, Crystal Structure Of Laccase From Thermus Thermophilus
Hb27
pdb|2XUW|A Chain A, Crystal Structure Of Apolaccase From Thermus Thermophilus
Hb27
pdb|2XVB|A Chain A, Crystal Structure Of Laccase From Thermus Thermophilus
Hb27 Complexed With Hg, Crystal Of The Apoenzyme Soaked
For 5 Min. In 5 Mm Hgcl2 At 278 K.
pdb|4AI7|A Chain A, Crystal Structure Of Laccase From Thermus Thermophilus
Hb27 Complexed With Hg, Crystal Of The Apoenzyme Soaked
For 2 H In 5 Mm Hgcl2 At 278 K.
pdb|2YAE|A Chain A, X-Ray Induced Reduction Of Laccase From Thermus
Thermophilus Hb27(0.0-12.5 Percent Dose)
pdb|2YAF|A Chain A, X-Ray Induced Reduction Of Laccase From Thermus
Thermophilus Hb27 (12.5-25.0 Percent Dose)
pdb|2YAH|A Chain A, X-Ray Induced Reduction Of Laccase From Thermus
Thermophilus Hb27 (25.0-37.5 Percent Dose)
pdb|2YAM|A Chain A, X-Ray Induced Reduction Of Laccase From Thermus
Thermophilus Hb27 (37.5-50.0 Percent Dose)
pdb|2YAO|A Chain A, X-Ray Induced Reduction Of Laccase From Thermus
Thermophilus Hb27 (50.0-62.5 Percent Dose)
pdb|2YAP|A Chain A, X-Ray Induced Reduction Of Laccase From Thermus
Thermophilus Hb27 (62.5-75.0 Percent Dose)
pdb|2YAQ|A Chain A, X-Ray Induced Reduction Of Laccase From Thermus
Thermophilus Hb27 (75.0-87.5 Percent Dose)
pdb|2YAR|A Chain A, X-Ray Induced Reduction Of Laccase From Thermus
Thermophilus Hb27 (87.5-100.0 Percent Dose)
Length = 439
Score = 49.3 bits (116), Expect = 6e-07, Method: Composition-based stats.
Identities = 28/92 (30%), Positives = 50/92 (54%), Gaps = 5/92 (5%)
Query: 23 GFERAILSINRQLPGPSIQVCKGDTIIVDVKNHMIDREVTLHWHGVYQKVTPWMDGVPMV 82
G +L+ PGP+++V DT+ + ++N + + LHWHG+ ++P +D P +
Sbjct: 32 GQRATLLTYGGSFPGPTLRVRPRDTVRLTLENRLPE-PTNLHWHGL--PISPKVDD-PFL 87
Query: 83 TQCPIPSSTTFRYKFPAMPSGTFFYHSHVDRR 114
+ P S T+ + P +GTF+YH H+ R
Sbjct: 88 -EIPPGESWTYEFTVPKELAGTFWYHPHLHGR 118
>pdb|3UAA|A Chain A, Multicopper Oxidase Cueo Mutant C500se506q (Data1)
pdb|3UAB|A Chain A, Multicopper Oxidase Cueo Mutant C500se506q (Data2)
pdb|3UAC|A Chain A, Multicopper Oxidase Cueo Mutant C500se506q (Data4)
pdb|3UAD|A Chain A, Multicopper Oxidase Cueo Mutant C500se506q (Data5)
pdb|3UAE|A Chain A, Multicopper Oxidase Cueo Mutant C500se506q (Data6)
Length = 489
Score = 42.0 bits (97), Expect = 8e-05, Method: Composition-based stats.
Identities = 29/83 (34%), Positives = 43/83 (51%), Gaps = 13/83 (15%)
Query: 32 NRQLPGPSIQVCKGDTIIVDVKNHMIDREVTLHWHGVYQKVTPWMDGVPMVTQCPIP--- 88
N L GP++++ +G + VD+ N + + E TLHWHG+ +V +DG P Q IP
Sbjct: 42 NGNLLGPAVKLQRGKAVTVDIYNQLTE-ETTLHWHGL--EVPGEVDGGP---QGIIPPGG 95
Query: 89 -SSTTFRYKFPAMPSGTFFYHSH 110
S T PA T ++H H
Sbjct: 96 KRSVTLNVDQPA---ATCWFHPH 115
>pdb|1KV7|A Chain A, Crystal Structure Of Cueo, A Multi-Copper Oxidase From E.
Coli Involved In Copper Homeostasis
pdb|1N68|A Chain A, Copper Bound To The Multicopper Oxidase Cueo
pdb|2FQD|A Chain A, Crystal Structures Of E. Coli Laccase Cueo Under Different
Copper Binding Situations
pdb|2FQE|A Chain A, Crystal Structures Of E. Coli Laccase Cueo Under Different
Copper Binding Situations
pdb|2FQF|A Chain A, Crystal Structures Of E. Coli Laccase Cueo Under Different
Copper Binding Situations
pdb|2FQG|A Chain A, Crystal Structures Of E. Coli Laccase Cueo Under Different
Copper Binding Situations
pdb|3NSD|A Chain A, Silver Bound To The Multicopper Oxidase Cueo (Untagged)
pdb|3OD3|A Chain A, Cueo At 1.1 A Resolution Including Residues In Previously
Disordered Region
pdb|3PAU|A Chain A, Cueo In The Resting Oxidized State
pdb|3PAV|A Chain A, The Reduced Form Of Cueo
Length = 488
Score = 42.0 bits (97), Expect = 8e-05, Method: Composition-based stats.
Identities = 29/83 (34%), Positives = 43/83 (51%), Gaps = 13/83 (15%)
Query: 32 NRQLPGPSIQVCKGDTIIVDVKNHMIDREVTLHWHGVYQKVTPWMDGVPMVTQCPIP--- 88
N L GP++++ +G + VD+ N + + E TLHWHG+ +V +DG P Q IP
Sbjct: 42 NGNLLGPAVKLQRGKAVTVDIYNQLTE-ETTLHWHGL--EVPGEVDGGP---QGIIPPGG 95
Query: 89 -SSTTFRYKFPAMPSGTFFYHSH 110
S T PA T ++H H
Sbjct: 96 KRSVTLNVDQPA---ATCWFHPH 115
>pdb|3NSC|A Chain A, C500s Mutant Of Cueo Bound To Cu(Ii)
pdb|3NT0|A Chain A, C500s (T1d) Mutant Of Cueo Soaked In And Bound To Cu(I)
Length = 505
Score = 42.0 bits (97), Expect = 8e-05, Method: Composition-based stats.
Identities = 29/83 (34%), Positives = 43/83 (51%), Gaps = 13/83 (15%)
Query: 32 NRQLPGPSIQVCKGDTIIVDVKNHMIDREVTLHWHGVYQKVTPWMDGVPMVTQCPIP--- 88
N L GP++++ +G + VD+ N + + E TLHWHG+ +V +DG P Q IP
Sbjct: 42 NGNLLGPAVKLQRGKAVTVDIYNQLTE-ETTLHWHGL--EVPGEVDGGP---QGIIPPGG 95
Query: 89 -SSTTFRYKFPAMPSGTFFYHSH 110
S T PA T ++H H
Sbjct: 96 KRSVTLNVDQPA---ATCWFHPH 115
>pdb|3QQX|A Chain A, Reduced Native Intermediate Of The Multicopper Oxidase
Cueo
Length = 505
Score = 42.0 bits (97), Expect = 8e-05, Method: Composition-based stats.
Identities = 29/83 (34%), Positives = 43/83 (51%), Gaps = 13/83 (15%)
Query: 32 NRQLPGPSIQVCKGDTIIVDVKNHMIDREVTLHWHGVYQKVTPWMDGVPMVTQCPIP--- 88
N L GP++++ +G + VD+ N + + E TLHWHG+ +V +DG P Q IP
Sbjct: 42 NGNLLGPAVKLQRGKAVTVDIYNQLTE-ETTLHWHGL--EVPGEVDGGP---QGIIPPGG 95
Query: 89 -SSTTFRYKFPAMPSGTFFYHSH 110
S T PA T ++H H
Sbjct: 96 KRSVTLNVDQPA---ATCWFHPH 115
>pdb|1PF3|A Chain A, Crystal Structure Of The M441l Mutant Of The Multicopper
Oxidase Cueo
Length = 498
Score = 42.0 bits (97), Expect = 9e-05, Method: Composition-based stats.
Identities = 29/83 (34%), Positives = 43/83 (51%), Gaps = 13/83 (15%)
Query: 32 NRQLPGPSIQVCKGDTIIVDVKNHMIDREVTLHWHGVYQKVTPWMDGVPMVTQCPIP--- 88
N L GP++++ +G + VD+ N + + E TLHWHG+ +V +DG P Q IP
Sbjct: 42 NGNLLGPAVKLQRGKAVTVDIYNQLTE-ETTLHWHGL--EVPGEVDGGP---QGIIPPGG 95
Query: 89 -SSTTFRYKFPAMPSGTFFYHSH 110
S T PA T ++H H
Sbjct: 96 KRSVTLNVDQPA---ATCWFHPH 115
>pdb|3NSF|A Chain A, Apo Form Of The Multicopper Oxidase Cueo
Length = 505
Score = 42.0 bits (97), Expect = 9e-05, Method: Composition-based stats.
Identities = 29/83 (34%), Positives = 43/83 (51%), Gaps = 13/83 (15%)
Query: 32 NRQLPGPSIQVCKGDTIIVDVKNHMIDREVTLHWHGVYQKVTPWMDGVPMVTQCPIP--- 88
N L GP++++ +G + VD+ N + + E TLHWHG+ +V +DG P Q IP
Sbjct: 42 NGNLLGPAVKLQRGKAVTVDIYNQLTE-ETTLHWHGL--EVPGEVDGGP---QGIIPPGG 95
Query: 89 -SSTTFRYKFPAMPSGTFFYHSH 110
S T PA T ++H H
Sbjct: 96 KRSVTLNVDQPA---ATCWFHPH 115
>pdb|3NSY|A Chain A, The Multi-Copper Oxidase Cueo With Six Met To Ser
Mutations (M358s, M361s,M362s,M364s,M366s,M368s)
Length = 511
Score = 42.0 bits (97), Expect = 9e-05, Method: Composition-based stats.
Identities = 29/83 (34%), Positives = 43/83 (51%), Gaps = 13/83 (15%)
Query: 32 NRQLPGPSIQVCKGDTIIVDVKNHMIDREVTLHWHGVYQKVTPWMDGVPMVTQCPIP--- 88
N L GP++++ +G + VD+ N + + E TLHWHG+ +V +DG P Q IP
Sbjct: 42 NGNLLGPAVKLQRGKAVTVDIYNQLTE-ETTLHWHGL--EVPGEVDGGP---QGIIPPGG 95
Query: 89 -SSTTFRYKFPAMPSGTFFYHSH 110
S T PA T ++H H
Sbjct: 96 KRSVTLNVDQPA---ATCWFHPH 115
>pdb|2YXV|A Chain A, The Deletion Mutant Of Multicopper Oxidase Cueo
pdb|2YXV|B Chain B, The Deletion Mutant Of Multicopper Oxidase Cueo
pdb|2YXW|A Chain A, The Deletion Mutant Of Multicopper Oxidase Cueo
pdb|2YXW|B Chain B, The Deletion Mutant Of Multicopper Oxidase Cueo
Length = 446
Score = 41.6 bits (96), Expect = 1e-04, Method: Composition-based stats.
Identities = 29/83 (34%), Positives = 43/83 (51%), Gaps = 13/83 (15%)
Query: 32 NRQLPGPSIQVCKGDTIIVDVKNHMIDREVTLHWHGVYQKVTPWMDGVPMVTQCPIP--- 88
N L GP++++ +G + VD+ N + + E TLHWHG+ +V +DG P Q IP
Sbjct: 42 NGNLLGPAVKLQRGKAVTVDIYNQLTE-ETTLHWHGL--EVPGEVDGGP---QGIIPPGG 95
Query: 89 -SSTTFRYKFPAMPSGTFFYHSH 110
S T PA T ++H H
Sbjct: 96 KRSVTLNVDQPA---ATCWFHPH 115
>pdb|3CG8|A Chain A, Laccase From Streptomyces Coelicolor
pdb|3CG8|B Chain B, Laccase From Streptomyces Coelicolor
pdb|3CG8|C Chain C, Laccase From Streptomyces Coelicolor
Length = 343
Score = 40.0 bits (92), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 47/101 (46%), Gaps = 19/101 (18%)
Query: 23 GFERAILSINRQLPGPSIQVCKGDTIIVDVKNHMIDREVTLHWHGVYQKVTPWMDGVPMV 82
GFE+ S+ PGP I+V +GDT+ ++ N M D +LH HG+ +++ DG M
Sbjct: 66 GFEKGKASV----PGPLIEVNEGDTLHIEFTNTM-DVRASLHVHGLDYEISS--DGTAMN 118
Query: 83 TQCPIPSST---TFRYKFPAM---------PSGTFFYHSHV 111
P T T+R P +G + YH HV
Sbjct: 119 KSDVEPGGTRTYTWRTHKPGRRDDGTWRPGSAGYWHYHDHV 159
>pdb|4GY4|A Chain A, Role Of The Biradical Intermediate Observed During The
Turnover Of Slac: A Two-Domain Laccase From Streptomyces
Coelicolor
pdb|4GY4|B Chain B, Role Of The Biradical Intermediate Observed During The
Turnover Of Slac: A Two-Domain Laccase From Streptomyces
Coelicolor
pdb|4GY4|C Chain C, Role Of The Biradical Intermediate Observed During The
Turnover Of Slac: A Two-Domain Laccase From Streptomyces
Coelicolor
Length = 278
Score = 39.7 bits (91), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 47/101 (46%), Gaps = 19/101 (18%)
Query: 23 GFERAILSINRQLPGPSIQVCKGDTIIVDVKNHMIDREVTLHWHGVYQKVTPWMDGVPMV 82
GFE+ S+ PGP I+V +GDT+ ++ N M D +LH HG+ +++ DG M
Sbjct: 28 GFEKGKASV----PGPLIEVNEGDTLHIEFTNTM-DVRASLHVHGLDAEISS--DGTAMN 80
Query: 83 TQCPIPSST---TFRYKFPAM---------PSGTFFYHSHV 111
P T T+R P +G + YH HV
Sbjct: 81 KSDVEPGGTRTYTWRTHKPGRRDDGTWRPGSAGYWHYHDHV 121
>pdb|3KW8|A Chain A, Two-Domain Laccase From Streptomyces Coelicolor At 2.3 A
Resolution
Length = 276
Score = 39.3 bits (90), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 47/101 (46%), Gaps = 19/101 (18%)
Query: 23 GFERAILSINRQLPGPSIQVCKGDTIIVDVKNHMIDREVTLHWHGVYQKVTPWMDGVPMV 82
GFE+ S+ PGP I+V +GDT+ ++ N M D +LH HG+ +++ DG M
Sbjct: 25 GFEKGKASV----PGPLIEVNEGDTLHIEFTNTM-DVRASLHVHGLDYEISS--DGTAMN 77
Query: 83 TQCPIPSST---TFRYKFPAM---------PSGTFFYHSHV 111
P T T+R P +G + YH HV
Sbjct: 78 KSDVEPGGTRTYTWRTHKPGRRDDGTWRPGSAGYWHYHDHV 118
>pdb|3TAS|A Chain A, Small Laccase From Streptomyces Viridosporus T7a
pdb|3TAS|B Chain B, Small Laccase From Streptomyces Viridosporus T7a
pdb|3TAS|C Chain C, Small Laccase From Streptomyces Viridosporus T7a
pdb|3TBB|A Chain A, Small Laccase From Streptomyces Viridosporus T7a;
Alternate Crystal Form.
pdb|3TBB|B Chain B, Small Laccase From Streptomyces Viridosporus T7a;
Alternate Crystal Form.
pdb|3TBB|C Chain C, Small Laccase From Streptomyces Viridosporus T7a;
Alternate Crystal Form.
pdb|3TBC|A Chain A, Small Laccase From Streptomyces Viridosporus T7a;
Alternate Crystal Form Complexed With Acetovanillone.
pdb|3TBC|B Chain B, Small Laccase From Streptomyces Viridosporus T7a;
Alternate Crystal Form Complexed With Acetovanillone.
pdb|3TBC|C Chain C, Small Laccase From Streptomyces Viridosporus T7a;
Alternate Crystal Form Complexed With Acetovanillone
Length = 313
Score = 39.3 bits (90), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 51/112 (45%), Gaps = 19/112 (16%)
Query: 12 ACRRKGCVTADGFERAILSINRQLPGPSIQVCKGDTIIVDVKNHMIDREVTLHWHGVYQK 71
A R G G E+ +I PGP I++ +GDT+ ++ +N M D V+LH HG+ +
Sbjct: 20 AERLGGGQMGYGLEKGKATI----PGPLIELNEGDTLHIEFENTM-DVPVSLHVHGLDYE 74
Query: 72 VTPWMDGVPMVTQCPIPSST---TFRYKFP---------AMPSGTFFYHSHV 111
++ DG P T T+R P A +G + YH HV
Sbjct: 75 ISS--DGTKQSRSDVEPGGTRTYTWRTHVPGRRADGTWRAGSAGYWHYHDHV 124
>pdb|4GXF|A Chain A, Role Of The Biradical Intermediate Observed During The
Turnover Of Slac: A Two-Domain Laccase From Streptomyces
Coelicolor
pdb|4GXF|B Chain B, Role Of The Biradical Intermediate Observed During The
Turnover Of Slac: A Two-Domain Laccase From Streptomyces
Coelicolor
pdb|4GXF|C Chain C, Role Of The Biradical Intermediate Observed During The
Turnover Of Slac: A Two-Domain Laccase From Streptomyces
Coelicolor
Length = 279
Score = 38.9 bits (89), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 47/101 (46%), Gaps = 19/101 (18%)
Query: 23 GFERAILSINRQLPGPSIQVCKGDTIIVDVKNHMIDREVTLHWHGVYQKVTPWMDGVPMV 82
GFE+ S+ PGP I+V +GDT+ ++ N M D +LH HG+ +++ DG M
Sbjct: 29 GFEKGKASV----PGPLIEVNEGDTLHIEFTNTM-DVRASLHVHGLDFEISS--DGTAMN 81
Query: 83 TQCPIPSST---TFRYKFPAM---------PSGTFFYHSHV 111
P T T+R P +G + YH HV
Sbjct: 82 KSDVEPGGTRTYTWRTHKPGRRDDGTWRPGSAGYWHYHDHV 122
>pdb|3T9W|A Chain A, Small Laccase From Amycolatopsis Sp. Atcc 39116
pdb|3TA4|F Chain F, Small Laccase From Amycolatopsis Sp. Atcc 39116 Complexed
With 1-(3,4-
Dimethoxyphenyl)-2-(2-Methoxyphenoxy)-1,
3-Dihydroxypropane
pdb|3TA4|D Chain D, Small Laccase From Amycolatopsis Sp. Atcc 39116 Complexed
With 1-(3,4-
Dimethoxyphenyl)-2-(2-Methoxyphenoxy)-1,
3-Dihydroxypropane
pdb|3TA4|E Chain E, Small Laccase From Amycolatopsis Sp. Atcc 39116 Complexed
With 1-(3,4-
Dimethoxyphenyl)-2-(2-Methoxyphenoxy)-1,
3-Dihydroxypropane
Length = 299
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 35/63 (55%), Gaps = 4/63 (6%)
Query: 35 LPGPSIQVCKGDTIIVDVKNHMIDREVTLHWHGVYQKVTPWMDGVPMVTQCPIPSSTTFR 94
+PGP +++ +GDT+ +D+ N DR ++LH HGV V DG M +P T R
Sbjct: 55 VPGPVLEMWEGDTLEIDLVN-TTDRVLSLHPHGVDYDVNS--DGTLMNGSAVMPGQTR-R 110
Query: 95 YKF 97
Y +
Sbjct: 111 YTW 113
>pdb|2ZOO|A Chain A, Crystal Structure Of Nitrite Reductase From
Pseudoalteromonas Haloplanktis Tac125
Length = 442
Score = 33.5 bits (75), Expect = 0.031, Method: Composition-based stats.
Identities = 27/91 (29%), Positives = 38/91 (41%), Gaps = 12/91 (13%)
Query: 21 ADGFERAILSINRQLPGPSIQVCKGDTIIVDVKNH---MIDREVTLHWHGVYQKVTPWMD 77
ADG E S +PG I+V +GD I ++ NH + + LH VT
Sbjct: 43 ADGVEYVFWSFGETVPGSFIRVREGDEIEFNLSNHPSSKMPHNIDLH------AVTGPGG 96
Query: 78 GVPMVTQCPIPSSTTFRYKFPAMPSGTFFYH 108
G P +ST + F A+ G + YH
Sbjct: 97 GAESSFTAPGHTST---FNFKALNPGLYIYH 124
>pdb|1GS8|A Chain A, Crystal Structure Of Mutant D92n Alcaligenes Xylosoxidans
Nitrite Reductase
Length = 336
Score = 32.0 bits (71), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 41/98 (41%), Gaps = 12/98 (12%)
Query: 14 RRKGCVTADGFERAILSINRQLPGPSIQVCKGDTI---IVDVKNHMIDREVTLHWHGVYQ 70
+K + G ++ N +PGP++ V +GD + +V+ + + V H
Sbjct: 41 EKKMVIDDKGTTLQAMTFNGSMPGPTLVVHEGDYVQLTLVNPATNAMPHNVNFH------ 94
Query: 71 KVTPWMDGVPMVTQCPIPSSTTFRYKFPAMPSGTFFYH 108
T + G + P +T +F A SGTF YH
Sbjct: 95 GATGALGGAKLTNVNPGEQAT---LRFKADRSGTFVYH 129
>pdb|2BO0|A Chain A, Crystal Structure Of The C130a Mutant Of Nitrite Reductase
From Alcaligenes Xylosoxidans
Length = 336
Score = 32.0 bits (71), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 24/99 (24%), Positives = 42/99 (42%), Gaps = 12/99 (12%)
Query: 14 RRKGCVTADGFERAILSINRQLPGPSIQVCKGDTI---IVDVKNHMIDREVTLHWHGVYQ 70
+K + G ++ N +PGP++ V +GD + +V+ + + V H
Sbjct: 41 EKKMVIDDKGTTLQAMTFNGSMPGPTLVVHEGDYVQLTLVNPATNAMPHNVDFH------ 94
Query: 71 KVTPWMDGVPMVTQCPIPSSTTFRYKFPAMPSGTFFYHS 109
T + G + P +T +F A SGTF YH+
Sbjct: 95 GATGALGGAKLTNVNPGEQAT---LRFKADRSGTFVYHA 130
>pdb|1NDT|A Chain A, Nitrite Reductase From Alcaligenes Xylosoxidans
Length = 336
Score = 31.6 bits (70), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 41/98 (41%), Gaps = 12/98 (12%)
Query: 14 RRKGCVTADGFERAILSINRQLPGPSIQVCKGDTI---IVDVKNHMIDREVTLHWHGVYQ 70
+K + G ++ N +PGP++ V +GD + +V+ + + V H
Sbjct: 41 EKKMVIDDSGTTLQAMTFNGSMPGPTLVVHEGDYVQLTLVNPATNAMPHNVDFH------ 94
Query: 71 KVTPWMDGVPMVTQCPIPSSTTFRYKFPAMPSGTFFYH 108
T + G + P +T +F A SGTF YH
Sbjct: 95 GATGALGGAKLTNVNPGEQAT---LRFKADRSGTFVYH 129
>pdb|1OE2|A Chain A, Atomic Resolution Structure Of D92e Mutant Of Alcaligenes
Xylosoxidans Nitrite Reductase
Length = 336
Score = 31.6 bits (70), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 41/98 (41%), Gaps = 12/98 (12%)
Query: 14 RRKGCVTADGFERAILSINRQLPGPSIQVCKGDTI---IVDVKNHMIDREVTLHWHGVYQ 70
+K + G ++ N +PGP++ V +GD + +V+ + + V H
Sbjct: 41 EKKMVIDDKGTTLQAMTFNGSMPGPTLVVHEGDYVQLTLVNPATNAMPHNVEFH------ 94
Query: 71 KVTPWMDGVPMVTQCPIPSSTTFRYKFPAMPSGTFFYH 108
T + G + P +T +F A SGTF YH
Sbjct: 95 GATGALGGAKLTNVNPGEQAT---LRFKADRSGTFVYH 129
>pdb|1WA0|X Chain X, Crystal Structure Of W138h Mutant Of Alcaligenes
Xylosoxidans Nitrite Reductase
Length = 336
Score = 31.6 bits (70), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 41/98 (41%), Gaps = 12/98 (12%)
Query: 14 RRKGCVTADGFERAILSINRQLPGPSIQVCKGDTI---IVDVKNHMIDREVTLHWHGVYQ 70
+K + G ++ N +PGP++ V +GD + +V+ + + V H
Sbjct: 41 EKKMVIDDKGTTLQAMTFNGSMPGPTLVVHEGDYVQLTLVNPATNAMPHNVDFH------ 94
Query: 71 KVTPWMDGVPMVTQCPIPSSTTFRYKFPAMPSGTFFYH 108
T + G + P +T +F A SGTF YH
Sbjct: 95 GATGALGGAKLTNVNPGEQAT---LRFKADRSGTFVYH 129
>pdb|2BP0|A Chain A, M168l Mutant Of Nitrite Reductase From Alcaligenes
Xylosoxidans
Length = 336
Score = 31.6 bits (70), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 41/98 (41%), Gaps = 12/98 (12%)
Query: 14 RRKGCVTADGFERAILSINRQLPGPSIQVCKGDTI---IVDVKNHMIDREVTLHWHGVYQ 70
+K + G ++ N +PGP++ V +GD + +V+ + + V H
Sbjct: 41 EKKMVIDDKGTTLQAMTFNGSMPGPTLVVHEGDYVQLTLVNPATNAMPHNVDFH------ 94
Query: 71 KVTPWMDGVPMVTQCPIPSSTTFRYKFPAMPSGTFFYH 108
T + G + P +T +F A SGTF YH
Sbjct: 95 GATGALGGAKLTNVNPGEQAT---LRFKADRSGTFVYH 129
>pdb|2BP0|B Chain B, M168l Mutant Of Nitrite Reductase From Alcaligenes
Xylosoxidans
Length = 336
Score = 31.6 bits (70), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 41/98 (41%), Gaps = 12/98 (12%)
Query: 14 RRKGCVTADGFERAILSINRQLPGPSIQVCKGDTI---IVDVKNHMIDREVTLHWHGVYQ 70
+K + G ++ N +PGP++ V +GD + +V+ + + V H
Sbjct: 41 EKKMVIDDKGTTLQAMTFNGSMPGPTLVVHEGDYVQLTLVNPATNAMPHNVDFH------ 94
Query: 71 KVTPWMDGVPMVTQCPIPSSTTFRYKFPAMPSGTFFYH 108
T + G + P +T +F A SGTF YH
Sbjct: 95 GATGALGGAKLTNVNPGEQAT---LRFKADRSGTFVYH 129
>pdb|1BQ5|A Chain A, Nitrite Reductase From Alcaligenes Xylosoxidans Gifu 1051
Length = 342
Score = 31.6 bits (70), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 41/98 (41%), Gaps = 12/98 (12%)
Query: 14 RRKGCVTADGFERAILSINRQLPGPSIQVCKGDTI---IVDVKNHMIDREVTLHWHGVYQ 70
+K + G ++ N +PGP++ V +GD + +V+ + + V H
Sbjct: 47 EKKMVIDDKGTTLQAMTFNGSMPGPTLVVHEGDYVQLTLVNPATNAMPHNVDFH------ 100
Query: 71 KVTPWMDGVPMVTQCPIPSSTTFRYKFPAMPSGTFFYH 108
T + G + P +T +F A SGTF YH
Sbjct: 101 GATGALGGAKLTNVNPGEQAT---LRFKADRSGTFVYH 135
>pdb|2XWZ|A Chain A, Structure Of The Recombinant Native Nitrite Reductase From
Alcaligenes Xylosoxidans Complexed With Nitrite
pdb|2XWZ|B Chain B, Structure Of The Recombinant Native Nitrite Reductase From
Alcaligenes Xylosoxidans Complexed With Nitrite
pdb|2XWZ|C Chain C, Structure Of The Recombinant Native Nitrite Reductase From
Alcaligenes Xylosoxidans Complexed With Nitrite
pdb|2XWZ|D Chain D, Structure Of The Recombinant Native Nitrite Reductase From
Alcaligenes Xylosoxidans Complexed With Nitrite
pdb|2XWZ|E Chain E, Structure Of The Recombinant Native Nitrite Reductase From
Alcaligenes Xylosoxidans Complexed With Nitrite
pdb|2XWZ|F Chain F, Structure Of The Recombinant Native Nitrite Reductase From
Alcaligenes Xylosoxidans Complexed With Nitrite
Length = 336
Score = 31.6 bits (70), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 41/98 (41%), Gaps = 12/98 (12%)
Query: 14 RRKGCVTADGFERAILSINRQLPGPSIQVCKGDTI---IVDVKNHMIDREVTLHWHGVYQ 70
+K + G ++ N +PGP++ V +GD + +V+ + + V H
Sbjct: 41 EKKMVIDDKGTTLQAMTFNGSMPGPTLVVHEGDYVQLTLVNPATNAMPHNVDFH------ 94
Query: 71 KVTPWMDGVPMVTQCPIPSSTTFRYKFPAMPSGTFFYH 108
T + G + P +T +F A SGTF YH
Sbjct: 95 GATGALGGAKLTNVNPGEQAT---LRFKADRSGTFVYH 129
>pdb|2BP8|A Chain A, M168q Structure Of Nitrite Reductase From Alcaligenes
Xylosoxidans
Length = 336
Score = 31.6 bits (70), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 41/98 (41%), Gaps = 12/98 (12%)
Query: 14 RRKGCVTADGFERAILSINRQLPGPSIQVCKGDTI---IVDVKNHMIDREVTLHWHGVYQ 70
+K + G ++ N +PGP++ V +GD + +V+ + + V H
Sbjct: 41 EKKMVIDDKGTTLQAMTFNGSMPGPTLVVHEGDYVQLTLVNPATNAMPHNVDFH------ 94
Query: 71 KVTPWMDGVPMVTQCPIPSSTTFRYKFPAMPSGTFFYH 108
T + G + P +T +F A SGTF YH
Sbjct: 95 GATGALGGAKLTNVNPGEQAT---LRFKADRSGTFVYH 129
>pdb|2BP8|B Chain B, M168q Structure Of Nitrite Reductase From Alcaligenes
Xylosoxidans
Length = 336
Score = 31.6 bits (70), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 41/98 (41%), Gaps = 12/98 (12%)
Query: 14 RRKGCVTADGFERAILSINRQLPGPSIQVCKGDTI---IVDVKNHMIDREVTLHWHGVYQ 70
+K + G ++ N +PGP++ V +GD + +V+ + + V H
Sbjct: 41 EKKMVIDDKGTTLQAMTFNGSMPGPTLVVHEGDYVQLTLVNPATNAMPHNVDFH------ 94
Query: 71 KVTPWMDGVPMVTQCPIPSSTTFRYKFPAMPSGTFFYH 108
T + G + P +T +F A SGTF YH
Sbjct: 95 GATGALGGAKLTNVNPGEQAT---LRFKADRSGTFVYH 129
>pdb|1WA1|X Chain X, Crystal Structure Of H313q Mutant Of Alcaligenes
Xylosoxidans Nitrite Reductase
pdb|1WA2|X Chain X, Crystal Structure Of H313q Mutant Of Alcaligenes
Xylosoxidans Nitrite Reductase With Nitrite Bound
Length = 336
Score = 31.6 bits (70), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 41/98 (41%), Gaps = 12/98 (12%)
Query: 14 RRKGCVTADGFERAILSINRQLPGPSIQVCKGDTI---IVDVKNHMIDREVTLHWHGVYQ 70
+K + G ++ N +PGP++ V +GD + +V+ + + V H
Sbjct: 41 EKKMVIDDKGTTLQAMTFNGSMPGPTLVVHEGDYVQLTLVNPATNAMPHNVDFH------ 94
Query: 71 KVTPWMDGVPMVTQCPIPSSTTFRYKFPAMPSGTFFYH 108
T + G + P +T +F A SGTF YH
Sbjct: 95 GATGALGGAKLTNVNPGEQAT---LRFKADRSGTFVYH 129
>pdb|1OE1|A Chain A, Atomic Resolution Structure Of The Wildtype Native Nitrite
Reductase From Alcaligenes Xylosoxidans
pdb|1OE3|A Chain A, Atomic Resolution Structure Of 'half Apo' Nir
Length = 336
Score = 31.6 bits (70), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 41/98 (41%), Gaps = 12/98 (12%)
Query: 14 RRKGCVTADGFERAILSINRQLPGPSIQVCKGDTI---IVDVKNHMIDREVTLHWHGVYQ 70
+K + G ++ N +PGP++ V +GD + +V+ + + V H
Sbjct: 41 EKKMVIDDKGTTLQAMTFNGSMPGPTLVVHEGDYVQLTLVNPATNAMPHNVDFH------ 94
Query: 71 KVTPWMDGVPMVTQCPIPSSTTFRYKFPAMPSGTFFYH 108
T + G + P +T +F A SGTF YH
Sbjct: 95 GATGALGGAKLTNVNPGEQAT---LRFKADRSGTFVYH 129
>pdb|1GS6|X Chain X, Crystal Structure Of M144a Mutant Of Alcaligenes
Xylosoxidans Nitrite Reductase
Length = 336
Score = 31.6 bits (70), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 41/98 (41%), Gaps = 12/98 (12%)
Query: 14 RRKGCVTADGFERAILSINRQLPGPSIQVCKGDTI---IVDVKNHMIDREVTLHWHGVYQ 70
+K + G ++ N +PGP++ V +GD + +V+ + + V H
Sbjct: 41 EKKMVIDDKGTTLQAMTFNGSMPGPTLVVHEGDYVQLTLVNPATNAMPHNVDFH------ 94
Query: 71 KVTPWMDGVPMVTQCPIPSSTTFRYKFPAMPSGTFFYH 108
T + G + P +T +F A SGTF YH
Sbjct: 95 GATGALGGAKLTNVNPGEQAT---LRFKADRSGTFVYH 129
>pdb|1HAU|A Chain A, X-Ray Structure Of A Blue Copper Nitrite Reductase At High
Ph And In Copper Free Form At 1.9 A Resolution
pdb|1HAW|A Chain A, X-Ray Structure Of A Blue Copper Nitrite Reductase At High
Ph And In Copper Free Form At 1.9a Resolution
pdb|2VM3|A Chain A, Structure Of Alcaligenes Xylosoxidans In Space Group R3 -
1 Of 2
pdb|2VM4|A Chain A, Structure Of Alcaligenes Xylosoxidans Nitrite Reductase In
Space Group R3 - 2 Of 2
pdb|2VW4|A Chain A, Nitrite Reductase From Alcaligenes Xylosoxidans - 2 Of 3
pdb|2VW4|B Chain B, Nitrite Reductase From Alcaligenes Xylosoxidans - 2 Of 3
pdb|2VW6|A Chain A, Nitrite Reductase From Alcaligenes Xylosoxidans - 3 Of 3
pdb|2VW6|B Chain B, Nitrite Reductase From Alcaligenes Xylosoxidans - 3 Of 3
pdb|2VW7|A Chain A, Nitrite Reductase From Alcaligenes Xylosoxidans - 1 Of 3
pdb|2VW7|B Chain B, Nitrite Reductase From Alcaligenes Xylosoxidans - 1 Of 3
pdb|2ZON|A Chain A, Crystal Structure Of Electron Transfer Complex Of Nitrite
Reductase With Cytochrome C
pdb|2ZON|B Chain B, Crystal Structure Of Electron Transfer Complex Of Nitrite
Reductase With Cytochrome C
pdb|2ZON|C Chain C, Crystal Structure Of Electron Transfer Complex Of Nitrite
Reductase With Cytochrome C
Length = 336
Score = 31.6 bits (70), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 41/98 (41%), Gaps = 12/98 (12%)
Query: 14 RRKGCVTADGFERAILSINRQLPGPSIQVCKGDTI---IVDVKNHMIDREVTLHWHGVYQ 70
+K + G ++ N +PGP++ V +GD + +V+ + + V H
Sbjct: 41 EKKMVIDDKGTTLQAMTFNGSMPGPTLVVHEGDYVQLTLVNPATNAMPHNVDFH------ 94
Query: 71 KVTPWMDGVPMVTQCPIPSSTTFRYKFPAMPSGTFFYH 108
T + G + P +T +F A SGTF YH
Sbjct: 95 GATGALGGAKLTNVNPGEQAT---LRFKADRSGTFVYH 129
>pdb|1GS7|A Chain A, Crystal Structure Of H254f Mutant Of Alcaligenes
Xylosoxidans Nitrite Reductase
Length = 336
Score = 31.6 bits (70), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 41/98 (41%), Gaps = 12/98 (12%)
Query: 14 RRKGCVTADGFERAILSINRQLPGPSIQVCKGDTI---IVDVKNHMIDREVTLHWHGVYQ 70
+K + G ++ N +PGP++ V +GD + +V+ + + V H
Sbjct: 41 EKKMVIDDKGTTLQAMTFNGSMPGPTLVVHEGDYVQLTLVNPATNAMPHNVDFH------ 94
Query: 71 KVTPWMDGVPMVTQCPIPSSTTFRYKFPAMPSGTFFYH 108
T + G + P +T +F A SGTF YH
Sbjct: 95 GATGALGGAKLTNVNPGEQAT---LRFKADRSGTFVYH 129
>pdb|2XXF|A Chain A, Cu Metallated H254f Mutant Of Nitrite Reductase
pdb|2XXF|B Chain B, Cu Metallated H254f Mutant Of Nitrite Reductase
Length = 336
Score = 31.6 bits (70), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 41/98 (41%), Gaps = 12/98 (12%)
Query: 14 RRKGCVTADGFERAILSINRQLPGPSIQVCKGDTI---IVDVKNHMIDREVTLHWHGVYQ 70
+K + G ++ N +PGP++ V +GD + +V+ + + V H
Sbjct: 41 EKKMVIDDKGTTLQAMTFNGSMPGPTLVVHEGDYVQLTLVNPATNAMPHNVDFH------ 94
Query: 71 KVTPWMDGVPMVTQCPIPSSTTFRYKFPAMPSGTFFYH 108
T + G + P +T +F A SGTF YH
Sbjct: 95 GATGALGGAKLTNVNPGEQAT---LRFKADRSGTFVYH 129
>pdb|2JFC|A Chain A, M144l Mutant Of Nitrite Reductase From Alcaligenes
Xylosoxidans In Space Group P212121
pdb|2JFC|B Chain B, M144l Mutant Of Nitrite Reductase From Alcaligenes
Xylosoxidans In Space Group P212121
pdb|2JFC|C Chain C, M144l Mutant Of Nitrite Reductase From Alcaligenes
Xylosoxidans In Space Group P212121
pdb|2JFC|D Chain D, M144l Mutant Of Nitrite Reductase From Alcaligenes
Xylosoxidans In Space Group P212121
pdb|2JFC|E Chain E, M144l Mutant Of Nitrite Reductase From Alcaligenes
Xylosoxidans In Space Group P212121
pdb|2JFC|F Chain F, M144l Mutant Of Nitrite Reductase From Alcaligenes
Xylosoxidans In Space Group P212121
Length = 335
Score = 31.6 bits (70), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 41/98 (41%), Gaps = 12/98 (12%)
Query: 14 RRKGCVTADGFERAILSINRQLPGPSIQVCKGDTI---IVDVKNHMIDREVTLHWHGVYQ 70
+K + G ++ N +PGP++ V +GD + +V+ + + V H
Sbjct: 40 EKKMVIDDKGTTLQAMTFNGSMPGPTLVVHEGDYVQLTLVNPATNAMPHNVDFH------ 93
Query: 71 KVTPWMDGVPMVTQCPIPSSTTFRYKFPAMPSGTFFYH 108
T + G + P +T +F A SGTF YH
Sbjct: 94 GATGALGGAKLTNVNPGEQAT---LRFKADRSGTFVYH 128
>pdb|2VMJ|A Chain A, Type 1 Copper-Binding Loop Of Nitrite Reductase Mutant:
130- Capegmvpwhvvsgm-144 To 130-Ctphpfm-136
Length = 329
Score = 31.6 bits (70), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 41/98 (41%), Gaps = 12/98 (12%)
Query: 14 RRKGCVTADGFERAILSINRQLPGPSIQVCKGDTI---IVDVKNHMIDREVTLHWHGVYQ 70
+K + G ++ N +PGP++ V +GD + +V+ + + V H
Sbjct: 42 EKKMVIDDKGTTLQAMTFNGSMPGPTLVVHEGDYVQLTLVNPATNAMPHNVDFH------ 95
Query: 71 KVTPWMDGVPMVTQCPIPSSTTFRYKFPAMPSGTFFYH 108
T + G + P +T +F A SGTF YH
Sbjct: 96 GATGALGGAKLTNVNPGEQAT---LRFKADRSGTFVYH 130
>pdb|2XX1|A Chain A, Structure Of The N90s Mutant Of Nitrite Reductase From
Alcaligenes Xylosoxidans Complexed With Nitrite
pdb|2XX1|B Chain B, Structure Of The N90s Mutant Of Nitrite Reductase From
Alcaligenes Xylosoxidans Complexed With Nitrite
pdb|2XX1|C Chain C, Structure Of The N90s Mutant Of Nitrite Reductase From
Alcaligenes Xylosoxidans Complexed With Nitrite
pdb|2XX1|D Chain D, Structure Of The N90s Mutant Of Nitrite Reductase From
Alcaligenes Xylosoxidans Complexed With Nitrite
pdb|2XX1|E Chain E, Structure Of The N90s Mutant Of Nitrite Reductase From
Alcaligenes Xylosoxidans Complexed With Nitrite
pdb|2XX1|F Chain F, Structure Of The N90s Mutant Of Nitrite Reductase From
Alcaligenes Xylosoxidans Complexed With Nitrite
Length = 336
Score = 31.6 bits (70), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 41/98 (41%), Gaps = 12/98 (12%)
Query: 14 RRKGCVTADGFERAILSINRQLPGPSIQVCKGDTI---IVDVKNHMIDREVTLHWHGVYQ 70
+K + G ++ N +PGP++ V +GD + +V+ + + V H
Sbjct: 41 EKKMVIDDKGTTLQAMTFNGSMPGPTLVVHEGDYVQLTLVNPATNAMPHSVDFH------ 94
Query: 71 KVTPWMDGVPMVTQCPIPSSTTFRYKFPAMPSGTFFYH 108
T + G + P +T +F A SGTF YH
Sbjct: 95 GATGALGGAKLTNVNPGEQAT---LRFKADRSGTFVYH 129
>pdb|2VN3|A Chain A, Nitrite Reductase From Alcaligenes Xylosoxidans
Length = 337
Score = 31.6 bits (70), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 41/98 (41%), Gaps = 12/98 (12%)
Query: 14 RRKGCVTADGFERAILSINRQLPGPSIQVCKGDTI---IVDVKNHMIDREVTLHWHGVYQ 70
+K + G ++ N +PGP++ V +GD + +V+ + + V H
Sbjct: 42 EKKMVIDDKGTTLQAMTFNGSMPGPTLVVHEGDYVQLTLVNPATNAMPHNVDFH------ 95
Query: 71 KVTPWMDGVPMVTQCPIPSSTTFRYKFPAMPSGTFFYH 108
T + G + P +T +F A SGTF YH
Sbjct: 96 GATGALGGAKLTNVNPGEQAT---LRFKADRSGTFVYH 130
>pdb|2XXG|A Chain A, Structure Of The N90s Mutant Of Nitrite Reductase From
Alcaligenes Xylosoxidans
pdb|2XXG|C Chain C, Structure Of The N90s Mutant Of Nitrite Reductase From
Alcaligenes Xylosoxidans
Length = 336
Score = 31.2 bits (69), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 41/98 (41%), Gaps = 12/98 (12%)
Query: 14 RRKGCVTADGFERAILSINRQLPGPSIQVCKGDTI---IVDVKNHMIDREVTLHWHGVYQ 70
+K + G ++ N +PGP++ V +GD + +V+ + + V H
Sbjct: 41 EKKMVIDDKGTTLQAMTFNGSMPGPTLVVHEGDYVQLTLVNPATNAMPHSVDFH------ 94
Query: 71 KVTPWMDGVPMVTQCPIPSSTTFRYKFPAMPSGTFFYH 108
T + G + P +T +F A SGTF YH
Sbjct: 95 GATGALGGAKLTNVNPGEQAT---LRFKADRSGTFVYH 129
>pdb|2XX0|A Chain A, Structure Of The N90s-H254f Mutant Of Nitrite Reductase
From Alcaligenes Xylosoxidans
pdb|2XX0|B Chain B, Structure Of The N90s-H254f Mutant Of Nitrite Reductase
From Alcaligenes Xylosoxidans
Length = 336
Score = 31.2 bits (69), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 41/98 (41%), Gaps = 12/98 (12%)
Query: 14 RRKGCVTADGFERAILSINRQLPGPSIQVCKGDTI---IVDVKNHMIDREVTLHWHGVYQ 70
+K + G ++ N +PGP++ V +GD + +V+ + + V H
Sbjct: 41 EKKMVIDDKGTTLQAMTFNGSMPGPTLVVHEGDYVQLTLVNPATNAMPHSVDFH------ 94
Query: 71 KVTPWMDGVPMVTQCPIPSSTTFRYKFPAMPSGTFFYH 108
T + G + P +T +F A SGTF YH
Sbjct: 95 GATGALGGAKLTNVNPGEQAT---LRFKADRSGTFVYH 129
>pdb|2DV6|A Chain A, Crystal Structure Of Nitrite Reductase From Hyphomicrobium
Denitrificans
pdb|2DV6|B Chain B, Crystal Structure Of Nitrite Reductase From Hyphomicrobium
Denitrificans
pdb|2DV6|C Chain C, Crystal Structure Of Nitrite Reductase From Hyphomicrobium
Denitrificans
pdb|2DV6|D Chain D, Crystal Structure Of Nitrite Reductase From Hyphomicrobium
Denitrificans
pdb|2DV6|E Chain E, Crystal Structure Of Nitrite Reductase From Hyphomicrobium
Denitrificans
pdb|2DV6|F Chain F, Crystal Structure Of Nitrite Reductase From Hyphomicrobium
Denitrificans
Length = 447
Score = 28.9 bits (63), Expect = 0.76, Method: Composition-based stats.
Identities = 11/26 (42%), Positives = 19/26 (73%)
Query: 30 SINRQLPGPSIQVCKGDTIIVDVKNH 55
+ N ++PGP ++V GDT+ + +KNH
Sbjct: 187 TFNGKVPGPFLRVRVGDTVELHLKNH 212
>pdb|1WAE|A Chain A, Crystal Structure Of H129v Mutant Of Alcaligenes
Xylosoxidans Nitrite Reductase
Length = 336
Score = 28.5 bits (62), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 23/97 (23%), Positives = 40/97 (41%), Gaps = 12/97 (12%)
Query: 14 RRKGCVTADGFERAILSINRQLPGPSIQVCKGDTI---IVDVKNHMIDREVTLHWHGVYQ 70
+K + G ++ N +PGP++ V +GD + +V+ + + V H
Sbjct: 41 EKKMVIDDKGTTLQAMTFNGSMPGPTLVVHEGDYVQLTLVNPATNAMPHNVDFH------ 94
Query: 71 KVTPWMDGVPMVTQCPIPSSTTFRYKFPAMPSGTFFY 107
T + G + P +T +F A SGTF Y
Sbjct: 95 GATGALGGAKLTNVNPGEQAT---LRFKADRSGTFVY 128
>pdb|1N8P|A Chain A, Crystal Structure Of Cystathionine Gamma-lyase From Yeast
pdb|1N8P|B Chain B, Crystal Structure Of Cystathionine Gamma-lyase From Yeast
pdb|1N8P|C Chain C, Crystal Structure Of Cystathionine Gamma-lyase From Yeast
pdb|1N8P|D Chain D, Crystal Structure Of Cystathionine Gamma-lyase From Yeast
Length = 393
Score = 28.1 bits (61), Expect = 1.3, Method: Composition-based stats.
Identities = 12/22 (54%), Positives = 14/22 (63%)
Query: 86 PIPSSTTFRYKFPAMPSGTFFY 107
PI STTF+ PA P GT+ Y
Sbjct: 28 PISLSTTFKQSSPANPIGTYEY 49
>pdb|3CDZ|A Chain A, Crystal Structure Of Human Factor Viii
Length = 754
Score = 27.3 bits (59), Expect = 2.1, Method: Composition-based stats.
Identities = 15/34 (44%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Query: 35 LPGPSIQVCKGDTIIVDVKNHMIDREVTLHWHGV 68
L GP+IQ DT+++ +KN M V+LH GV
Sbjct: 71 LLGPTIQAEVYDTVVITLKN-MASHPVSLHAVGV 103
>pdb|2R7E|A Chain A, Crystal Structure Analysis Of Coagulation Factor Viii
Length = 742
Score = 27.3 bits (59), Expect = 2.2, Method: Composition-based stats.
Identities = 15/34 (44%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Query: 35 LPGPSIQVCKGDTIIVDVKNHMIDREVTLHWHGV 68
L GP+IQ DT+++ +KN M V+LH GV
Sbjct: 72 LLGPTIQAEVYDTVVITLKN-MASHPVSLHAVGV 104
>pdb|1NDR|A Chain A, Crystallographic Structure Of A Blue Copper Nitrite
Reductase From Alcaligenes Xylosoxidans
pdb|1NDR|B Chain B, Crystallographic Structure Of A Blue Copper Nitrite
Reductase From Alcaligenes Xylosoxidans
pdb|1NDR|C Chain C, Crystallographic Structure Of A Blue Copper Nitrite
Reductase From Alcaligenes Xylosoxidans
pdb|1NDS|A Chain A, Crystallographic Structure Of A Substrate Bound Blue
Copper Nitrite Reductase From Alcaligenes Xylosoxidans
pdb|1NDS|B Chain B, Crystallographic Structure Of A Substrate Bound Blue
Copper Nitrite Reductase From Alcaligenes Xylosoxidans
pdb|1NDS|C Chain C, Crystallographic Structure Of A Substrate Bound Blue
Copper Nitrite Reductase From Alcaligenes Xylosoxidans
Length = 330
Score = 27.3 bits (59), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 25/98 (25%), Positives = 37/98 (37%), Gaps = 12/98 (12%)
Query: 14 RRKGCVTADGFERAILSINRQLPGPSIQVCKGDTI---IVDVKNHMIDREVTLHWHGVYQ 70
+K DG ++ N +PGP++ V +GD I +V+ + + V H
Sbjct: 37 EKKMVADDDGTTAQAMTFNGSVPGPTLVVHEGDYIELTLVNPATNSMPHNVDFHAATGAL 96
Query: 71 KVTPWMDGVPMVTQCPIPSSTTFRYKFPAMPSGTFFYH 108
VP R+K A SGTF YH
Sbjct: 97 GGAGLTQVVP-------GQEAVLRFK--ADRSGTFVYH 125
>pdb|2NZ2|A Chain A, Crystal Structure Of Human Argininosuccinate Synthase In
Complex With Aspartate And Citrulline
Length = 413
Score = 26.2 bits (56), Expect = 5.6, Method: Composition-based stats.
Identities = 9/24 (37%), Positives = 15/24 (62%)
Query: 101 PSGTFFYHSHVDRRPYCPEIEEKK 124
P+GT YH+H+D + + E +K
Sbjct: 286 PAGTILYHAHLDIEAFTMDREVRK 309
>pdb|1KBW|A Chain A, Crystal Structure Of The Soluble Domain Of Ania From
Neisseria Gonorrhoeae
pdb|1KBW|B Chain B, Crystal Structure Of The Soluble Domain Of Ania From
Neisseria Gonorrhoeae
pdb|1KBW|C Chain C, Crystal Structure Of The Soluble Domain Of Ania From
Neisseria Gonorrhoeae
pdb|1KBW|D Chain D, Crystal Structure Of The Soluble Domain Of Ania From
Neisseria Gonorrhoeae
pdb|1KBW|E Chain E, Crystal Structure Of The Soluble Domain Of Ania From
Neisseria Gonorrhoeae
pdb|1KBW|F Chain F, Crystal Structure Of The Soluble Domain Of Ania From
Neisseria Gonorrhoeae
pdb|1KBV|A Chain A, Nitrite-Soaked Crystal Structure Of The Soluble Domain
Of Ania From Neisseria Gonorrhoeae
pdb|1KBV|B Chain B, Nitrite-Soaked Crystal Structure Of The Soluble Domain
Of Ania From Neisseria Gonorrhoeae
pdb|1KBV|C Chain C, Nitrite-Soaked Crystal Structure Of The Soluble Domain
Of Ania From Neisseria Gonorrhoeae
pdb|1KBV|D Chain D, Nitrite-Soaked Crystal Structure Of The Soluble Domain
Of Ania From Neisseria Gonorrhoeae
pdb|1KBV|E Chain E, Nitrite-Soaked Crystal Structure Of The Soluble Domain
Of Ania From Neisseria Gonorrhoeae
pdb|1KBV|F Chain F, Nitrite-Soaked Crystal Structure Of The Soluble Domain
Of Ania From Neisseria Gonorrhoeae
Length = 327
Score = 25.8 bits (55), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 20/34 (58%)
Query: 22 DGFERAILSINRQLPGPSIQVCKGDTIIVDVKNH 55
DG E + + +PG I+V +GDT+ V+ N+
Sbjct: 54 DGVEYRYWTFDGDVPGRMIRVREGDTVEVEFSNN 87
>pdb|1WW9|A Chain A, Crystal Structure Of The Terminal Oxygenase Component Of
Carbazole 1, 9a-dioxygenase, A Non-heme Iron Oxygenase
System Catalyzing The Novel Angular Dioxygenation For
Carbazole And Dioxin
pdb|2DE5|A Chain A, Crystal Structure Of The Electron Transfer Complex Between
Oxygenase And Ferredoxin In Carbazole 1,9a-Dioxygenase
pdb|2DE5|B Chain B, Crystal Structure Of The Electron Transfer Complex Between
Oxygenase And Ferredoxin In Carbazole 1,9a-Dioxygenase
pdb|2DE5|C Chain C, Crystal Structure Of The Electron Transfer Complex Between
Oxygenase And Ferredoxin In Carbazole 1,9a-Dioxygenase
pdb|2DE6|A Chain A, The Reduced Complex Between Oxygenase And Ferredoxin In
Carbazole 1,9a-Dioxygenase
pdb|2DE6|B Chain B, The Reduced Complex Between Oxygenase And Ferredoxin In
Carbazole 1,9a-Dioxygenase
pdb|2DE6|C Chain C, The Reduced Complex Between Oxygenase And Ferredoxin In
Carbazole 1,9a-Dioxygenase
pdb|2DE7|A Chain A, The Substrate-Bound Complex Between Oxygenase And
Ferredoxin In Carbazole 1,9a-Dioxygenase
pdb|2DE7|B Chain B, The Substrate-Bound Complex Between Oxygenase And
Ferredoxin In Carbazole 1,9a-Dioxygenase
pdb|2DE7|C Chain C, The Substrate-Bound Complex Between Oxygenase And
Ferredoxin In Carbazole 1,9a-Dioxygenase
pdb|3VMG|A Chain A, Reduced Carbazole-Bound Complex Between Oxygenase And
Ferredoxin In Carbazole 1,9a-Dioxygenase
pdb|3VMG|B Chain B, Reduced Carbazole-Bound Complex Between Oxygenase And
Ferredoxin In Carbazole 1,9a-Dioxygenase
pdb|3VMG|C Chain C, Reduced Carbazole-Bound Complex Between Oxygenase And
Ferredoxin In Carbazole 1,9a-Dioxygenase
pdb|3VMH|A Chain A, Oxygen-Bound Complex Between Oxygenase And Ferredoxin In
Carbazole 1, 9a-Dioxygenase
pdb|3VMH|B Chain B, Oxygen-Bound Complex Between Oxygenase And Ferredoxin In
Carbazole 1, 9a-Dioxygenase
pdb|3VMH|C Chain C, Oxygen-Bound Complex Between Oxygenase And Ferredoxin In
Carbazole 1, 9a-Dioxygenase
pdb|3VMI|A Chain A, Carbazole- And Oxygen-Bound Complex Between Oxygenase And
Ferredoxin In Carbazole 1,9a-Dioxygenase
pdb|3VMI|B Chain B, Carbazole- And Oxygen-Bound Complex Between Oxygenase And
Ferredoxin In Carbazole 1,9a-Dioxygenase
pdb|3VMI|C Chain C, Carbazole- And Oxygen-Bound Complex Between Oxygenase And
Ferredoxin In Carbazole 1,9a-Dioxygenase
Length = 392
Score = 25.4 bits (54), Expect = 9.1, Method: Composition-based stats.
Identities = 16/58 (27%), Positives = 25/58 (43%), Gaps = 3/58 (5%)
Query: 68 VYQKVTPWMDGVPMVTQCPIPSSTTFRYKFPAMPSGTFFYHSHVDRRPYCPEIEEKKK 125
V ++ W+ GV V P P F + P + T +Y + + C EE+KK
Sbjct: 258 VANDISIWLPGVLKVNPFPNPDMMQFEWYVP-IDENTHYYFQTLGKP--CANDEERKK 312
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.138 0.460
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,211,827
Number of Sequences: 62578
Number of extensions: 164747
Number of successful extensions: 362
Number of sequences better than 100.0: 78
Number of HSP's better than 100.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 38
Number of HSP's that attempted gapping in prelim test: 247
Number of HSP's gapped (non-prelim): 80
length of query: 127
length of database: 14,973,337
effective HSP length: 87
effective length of query: 40
effective length of database: 9,529,051
effective search space: 381162040
effective search space used: 381162040
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 45 (21.9 bits)