Query psy16567
Match_columns 127
No_of_seqs 123 out of 1146
Neff 7.4
Searched_HMMs 46136
Date Fri Aug 16 16:20:04 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16567.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/16567hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF07732 Cu-oxidase_3: Multico 100.0 2.4E-37 5.1E-42 212.3 10.0 109 16-125 4-117 (117)
2 PLN02835 oxidoreductase 100.0 1.2E-33 2.6E-38 235.0 12.5 107 16-124 38-149 (539)
3 PLN02168 copper ion binding / 100.0 1.3E-33 2.9E-38 234.8 12.3 108 16-125 35-147 (545)
4 TIGR03389 laccase laccase, pla 100.0 1.9E-33 4.2E-38 233.8 12.9 108 17-125 13-124 (539)
5 PLN02354 copper ion binding / 100.0 1.5E-33 3.3E-38 234.9 11.3 108 16-125 36-148 (552)
6 PLN02191 L-ascorbate oxidase 100.0 2.9E-33 6.2E-38 234.2 11.1 108 17-124 33-144 (574)
7 PLN02991 oxidoreductase 100.0 4.1E-33 8.8E-38 231.8 11.9 108 16-125 37-149 (543)
8 TIGR03390 ascorbOXfungal L-asc 100.0 6.4E-33 1.4E-37 230.7 12.9 110 16-125 17-131 (538)
9 PLN00044 multi-copper oxidase- 100.0 8.5E-33 1.8E-37 231.6 12.1 108 16-125 36-150 (596)
10 PLN02792 oxidoreductase 100.0 1.3E-32 2.7E-37 228.7 11.8 106 16-123 25-135 (536)
11 TIGR03388 ascorbase L-ascorbat 100.0 4E-32 8.7E-37 226.1 12.8 110 16-125 10-123 (541)
12 PLN02604 oxidoreductase 100.0 1.6E-31 3.4E-36 223.5 12.3 110 16-125 33-146 (566)
13 TIGR01480 copper_res_A copper- 100.0 7.5E-31 1.6E-35 219.9 12.5 107 15-124 53-163 (587)
14 KOG1263|consensus 100.0 1.8E-29 3.9E-34 210.2 12.5 108 16-125 37-149 (563)
15 PRK10965 multicopper oxidase; 100.0 2.7E-28 5.9E-33 202.4 12.4 103 17-125 55-167 (523)
16 PRK10883 FtsI repressor; Provi 99.9 7.9E-27 1.7E-31 191.7 13.2 97 23-125 62-167 (471)
17 TIGR02376 Cu_nitrite_red nitri 99.9 9E-26 2E-30 177.1 12.3 98 21-125 42-148 (311)
18 COG2132 SufI Putative multicop 99.9 7.5E-22 1.6E-26 161.2 11.9 112 12-126 38-153 (451)
19 TIGR01480 copper_res_A copper- 99.9 1.8E-21 3.9E-26 163.5 12.0 107 13-121 471-586 (587)
20 TIGR03095 rusti_cyanin rusticy 99.8 3.7E-18 7.9E-23 121.5 11.0 105 17-122 19-148 (148)
21 PF07731 Cu-oxidase_2: Multico 99.5 4.4E-14 9.5E-19 98.0 6.8 84 37-122 33-135 (138)
22 TIGR03096 nitroso_cyanin nitro 99.4 2.4E-12 5.2E-17 90.1 10.2 81 19-113 41-122 (135)
23 PLN02835 oxidoreductase 99.3 2.1E-11 4.6E-16 102.1 8.7 86 40-126 413-516 (539)
24 TIGR03388 ascorbase L-ascorbat 99.2 1.2E-10 2.7E-15 97.5 8.9 85 40-124 418-525 (541)
25 TIGR03389 laccase laccase, pla 99.2 1.8E-10 3.8E-15 96.5 9.8 77 39-115 416-509 (539)
26 COG2132 SufI Putative multicop 99.1 2.2E-10 4.9E-15 93.9 8.9 90 24-115 340-438 (451)
27 PLN02604 oxidoreductase 99.1 2.2E-10 4.8E-15 96.5 8.6 85 40-124 441-548 (566)
28 PLN02191 L-ascorbate oxidase 99.1 5.3E-10 1.1E-14 94.4 8.8 85 40-124 441-548 (574)
29 PLN02354 copper ion binding / 99.1 5.5E-10 1.2E-14 93.9 8.3 75 40-115 420-508 (552)
30 PLN02168 copper ion binding / 99.1 8.5E-10 1.8E-14 92.6 9.3 71 40-111 417-501 (545)
31 PLN02792 oxidoreductase 99.1 9.1E-10 2E-14 92.3 9.4 86 40-126 405-508 (536)
32 PLN02991 oxidoreductase 99.0 1.3E-09 2.9E-14 91.4 9.2 82 40-122 412-508 (543)
33 PRK10965 multicopper oxidase; 99.0 1.1E-09 2.4E-14 91.6 8.1 91 29-121 414-522 (523)
34 TIGR03390 ascorbOXfungal L-asc 99.0 2.5E-09 5.4E-14 89.7 8.3 77 39-115 413-521 (538)
35 PRK02888 nitrous-oxide reducta 98.9 1.6E-08 3.5E-13 85.7 11.8 97 16-123 531-634 (635)
36 PF13473 Cupredoxin_1: Cupredo 98.9 5.1E-09 1.1E-13 69.8 6.7 78 30-121 27-104 (104)
37 PLN00044 multi-copper oxidase- 98.9 1E-08 2.2E-13 87.0 9.2 85 40-125 435-537 (596)
38 PRK10883 FtsI repressor; Provi 98.8 2E-08 4.4E-13 83.1 8.5 93 28-124 362-470 (471)
39 TIGR02376 Cu_nitrite_red nitri 98.8 1.5E-08 3.3E-13 79.8 7.4 88 26-114 188-283 (311)
40 TIGR02656 cyanin_plasto plasto 98.8 5.1E-08 1.1E-12 64.6 8.1 82 36-122 15-99 (99)
41 TIGR02657 amicyanin amicyanin. 98.7 9E-08 2E-12 61.5 8.3 75 36-122 9-83 (83)
42 PF00127 Copper-bind: Copper b 98.7 1.2E-07 2.6E-12 62.8 7.3 76 37-122 16-99 (99)
43 PF00394 Cu-oxidase: Multicopp 98.5 4.6E-07 1E-11 64.6 7.9 85 25-110 35-136 (159)
44 KOG1263|consensus 98.5 5.2E-07 1.1E-11 76.2 8.3 78 38-115 430-525 (563)
45 PRK02710 plastocyanin; Provisi 98.4 1.8E-06 3.8E-11 59.2 8.5 74 35-122 44-119 (119)
46 TIGR02375 pseudoazurin pseudoa 98.3 5.5E-06 1.2E-10 56.7 8.7 74 37-125 14-90 (116)
47 COG3794 PetE Plastocyanin [Ene 98.2 1.6E-05 3.4E-10 55.4 7.9 74 37-123 53-128 (128)
48 TIGR03102 halo_cynanin halocya 98.1 3.1E-05 6.8E-10 52.9 9.0 73 37-122 41-115 (115)
49 PF06525 SoxE: Sulfocyanin (So 98.0 0.00016 3.5E-09 53.5 10.9 97 27-124 74-188 (196)
50 TIGR03094 sulfo_cyanin sulfocy 98.0 0.00015 3.3E-09 53.2 10.3 97 28-125 74-188 (195)
51 PF00116 COX2: Cytochrome C ox 97.0 0.0069 1.5E-07 41.5 7.9 60 37-111 45-104 (120)
52 TIGR02695 azurin azurin. Azuri 96.4 0.027 5.8E-07 39.1 7.6 78 37-115 15-116 (125)
53 COG4263 NosZ Nitrous oxide red 96.1 0.039 8.5E-07 46.1 8.3 74 38-122 558-636 (637)
54 PRK10378 inactive ferrous ion 95.9 0.16 3.4E-06 41.4 10.7 80 32-124 38-118 (375)
55 TIGR02866 CoxB cytochrome c ox 95.6 0.095 2.1E-06 38.8 7.9 72 38-124 117-193 (201)
56 COG1622 CyoA Heme/copper-type 94.1 0.69 1.5E-05 35.6 9.3 73 37-124 136-213 (247)
57 COG4454 Uncharacterized copper 92.8 1.5 3.1E-05 31.6 8.5 82 35-121 60-156 (158)
58 PF12690 BsuPI: Intracellular 91.3 2.6 5.6E-05 26.9 7.7 58 38-107 16-80 (82)
59 COG4263 NosZ Nitrous oxide red 89.9 0.95 2.1E-05 38.1 5.7 92 7-111 517-610 (637)
60 PF05938 Self-incomp_S1: Plant 89.6 1.4 2.9E-05 29.2 5.5 56 49-113 2-57 (110)
61 MTH00047 COX2 cytochrome c oxi 88.5 5.9 0.00013 29.3 8.7 73 39-126 117-194 (194)
62 PF05506 DUF756: Domain of unk 88.3 4.8 0.0001 25.6 8.4 55 37-99 8-65 (89)
63 PRK13202 ureB urease subunit b 85.1 5.4 0.00012 26.8 6.2 60 39-99 12-84 (104)
64 PF10633 NPCBM_assoc: NPCBM-as 81.6 5.7 0.00012 24.5 5.1 59 43-106 2-70 (78)
65 MTH00140 COX2 cytochrome c oxi 80.1 10 0.00022 28.6 6.9 72 38-124 140-216 (228)
66 PRK13203 ureB urease subunit b 79.1 13 0.00027 24.9 6.2 60 39-99 12-83 (102)
67 TIGR00192 urease_beta urease, 78.7 13 0.00029 24.8 6.2 60 39-99 12-83 (101)
68 PF04744 Monooxygenase_B: Mono 77.3 1.5 3.2E-05 35.7 1.6 46 75-120 71-118 (381)
69 PF04744 Monooxygenase_B: Mono 76.6 7.8 0.00017 31.7 5.5 17 84-100 318-334 (381)
70 cd00407 Urease_beta Urease bet 76.6 18 0.00038 24.2 6.4 60 39-99 12-83 (101)
71 PRK13204 ureB urease subunit b 73.2 19 0.0004 25.9 6.2 60 39-99 35-106 (159)
72 PRK13205 ureB urease subunit b 73.1 19 0.00042 25.9 6.2 60 39-99 12-83 (162)
73 TIGR03079 CH4_NH3mon_ox_B meth 72.8 3.3 7.2E-05 33.8 2.6 46 75-120 91-138 (399)
74 PRK13201 ureB urease subunit b 72.0 23 0.0005 24.8 6.3 60 39-99 12-83 (136)
75 PRK13198 ureB urease subunit b 71.4 21 0.00047 25.6 6.1 60 39-99 40-111 (158)
76 TIGR03079 CH4_NH3mon_ox_B meth 70.7 8.5 0.00018 31.5 4.5 20 82-101 335-354 (399)
77 PRK05461 apaG CO2+/MG2+ efflux 69.4 21 0.00046 24.7 5.7 16 84-99 73-88 (127)
78 MTH00008 COX2 cytochrome c oxi 67.0 31 0.00067 26.1 6.7 58 38-110 140-197 (228)
79 PF04379 DUF525: Protein of un 65.6 12 0.00026 24.3 3.7 15 85-99 57-71 (90)
80 PF09394 Inhibitor_I42: Chagas 64.3 15 0.00032 23.1 3.9 62 40-105 1-67 (92)
81 KOG4387|consensus 63.9 5.1 0.00011 29.6 1.8 29 40-69 71-99 (191)
82 MTH00051 COX2 cytochrome c oxi 63.6 34 0.00074 25.9 6.4 58 38-110 144-201 (234)
83 COG1188 Ribosome-associated he 63.2 5.7 0.00012 26.5 1.8 29 29-57 36-64 (100)
84 PF10989 DUF2808: Protein of u 62.7 8.7 0.00019 26.9 2.8 28 84-111 96-127 (146)
85 TIGR01432 QOXA cytochrome aa3 61.7 29 0.00062 25.9 5.6 58 38-110 130-187 (217)
86 MTH00098 COX2 cytochrome c oxi 61.5 47 0.001 25.1 6.8 59 38-111 140-198 (227)
87 PTZ00047 cytochrome c oxidase 60.9 61 0.0013 23.5 7.1 58 39-111 74-131 (162)
88 cd00918 Der-p2_like Several gr 59.2 54 0.0012 22.3 7.4 60 38-99 20-87 (120)
89 PF00699 Urease_beta: Urease b 58.9 16 0.00035 24.4 3.3 60 39-99 11-82 (100)
90 TIGR01433 CyoA cytochrome o ub 58.6 36 0.00078 25.7 5.7 72 38-124 139-215 (226)
91 MTH00129 COX2 cytochrome c oxi 57.1 58 0.0013 24.6 6.6 58 39-111 141-198 (230)
92 PRK13192 bifunctional urease s 56.5 48 0.001 24.9 5.9 59 40-99 122-192 (208)
93 PF00927 Transglut_C: Transglu 54.7 22 0.00048 23.1 3.6 56 44-104 13-81 (107)
94 MTH00023 COX2 cytochrome c oxi 52.3 72 0.0016 24.3 6.5 58 38-110 151-208 (240)
95 MTH00038 COX2 cytochrome c oxi 51.9 68 0.0015 24.2 6.3 58 38-110 140-197 (229)
96 PRK13986 urease subunit alpha; 50.5 62 0.0014 24.6 5.7 59 40-99 118-188 (225)
97 cd05468 pVHL von Hippel-Landau 50.3 59 0.0013 22.7 5.3 41 44-94 5-45 (141)
98 PF04151 PPC: Bacterial pre-pe 50.0 53 0.0012 19.5 5.9 58 40-107 7-66 (70)
99 PF14646 MYCBPAP: MYCBP-associ 48.1 74 0.0016 26.1 6.4 64 40-104 241-316 (426)
100 PF07731 Cu-oxidase_2: Multico 47.6 82 0.0018 20.9 5.8 57 13-70 52-123 (138)
101 MTH00139 COX2 cytochrome c oxi 46.6 1.2E+02 0.0027 22.7 7.2 58 38-110 140-197 (226)
102 MTH00168 COX2 cytochrome c oxi 45.7 1E+02 0.0022 23.1 6.4 59 38-111 140-198 (225)
103 cd00916 Npc2_like Niemann-Pick 45.1 94 0.002 20.9 6.7 61 39-99 23-91 (123)
104 TIGR03396 PC_PLC phospholipase 45.0 2.3E+02 0.0049 25.3 9.4 57 37-101 593-652 (690)
105 COG2967 ApaG Uncharacterized p 44.9 51 0.0011 22.8 4.1 51 48-99 32-87 (126)
106 PF00386 C1q: C1q domain; Int 44.7 26 0.00057 23.3 2.8 17 38-54 91-107 (127)
107 PRK05659 sulfur carrier protei 42.6 29 0.00063 20.4 2.5 25 27-51 32-60 (66)
108 PF14453 ThiS-like: ThiS-like 42.0 30 0.00066 20.6 2.4 27 25-51 28-54 (57)
109 MTH00154 COX2 cytochrome c oxi 41.7 1.2E+02 0.0026 22.9 6.2 58 38-110 140-197 (227)
110 COG0361 InfA Translation initi 40.6 89 0.0019 19.7 4.5 30 24-53 20-58 (75)
111 MTH00185 COX2 cytochrome c oxi 39.9 1.6E+02 0.0035 22.2 7.1 59 38-111 140-198 (230)
112 PF14451 Ub-Mut7C: Mut7-C ubiq 39.3 27 0.00058 22.2 2.0 28 24-51 47-74 (81)
113 smart00110 C1Q Complement comp 39.2 34 0.00074 23.6 2.7 17 37-53 95-111 (135)
114 KOG1554|consensus 38.5 28 0.00061 27.7 2.4 10 104-113 134-143 (347)
115 KOG1692|consensus 38.2 1.3E+02 0.0029 22.5 5.7 21 89-110 74-94 (201)
116 PRK07440 hypothetical protein; 37.8 39 0.00084 20.6 2.5 26 26-51 35-64 (70)
117 COG4633 Plastocyanin domain co 37.6 1.9E+02 0.0042 22.4 7.5 85 24-122 84-168 (272)
118 PF06030 DUF916: Bacterial pro 36.2 1.4E+02 0.003 20.2 6.7 61 40-101 21-103 (121)
119 TIGR02988 YaaA_near_RecF S4 do 36.0 21 0.00046 20.7 1.1 22 29-50 36-58 (59)
120 COG0832 UreB Urea amidohydrola 35.6 1.4E+02 0.003 20.1 6.0 60 39-99 12-83 (106)
121 PF01847 VHL: von Hippel-Linda 35.5 69 0.0015 23.0 3.8 50 37-96 3-53 (156)
122 PF14478 DUF4430: Domain of un 34.4 25 0.00054 21.1 1.3 22 29-50 43-67 (68)
123 PF05753 TRAP_beta: Translocon 34.1 1.9E+02 0.004 21.1 6.4 60 47-106 41-104 (181)
124 PF05896 NQRA: Na(+)-transloca 33.7 55 0.0012 25.4 3.3 18 32-49 33-52 (257)
125 PRK10525 cytochrome o ubiquino 33.5 1.7E+02 0.0036 23.4 6.1 58 38-110 151-208 (315)
126 PF13464 DUF4115: Domain of un 33.3 1.2E+02 0.0025 18.5 8.4 32 36-70 28-59 (77)
127 cd00565 ThiS ThiaminS ubiquiti 33.3 39 0.00085 19.9 2.0 24 28-51 32-59 (65)
128 COG2104 ThiS Sulfur transfer p 33.3 47 0.001 20.3 2.4 27 25-51 32-62 (68)
129 PF11614 FixG_C: IG-like fold 32.9 1.2E+02 0.0025 19.9 4.5 58 36-99 19-82 (118)
130 cd08058 MPN_euk_mb Mpr1p, Pad1 32.3 24 0.00052 23.4 1.0 10 104-113 68-77 (119)
131 PRK06437 hypothetical protein; 31.6 54 0.0012 19.7 2.4 24 28-51 38-61 (67)
132 smart00363 S4 S4 RNA-binding d 31.0 46 0.001 18.0 2.0 24 29-52 28-52 (60)
133 PF07653 SH3_2: Variant SH3 do 30.7 28 0.00061 19.7 1.0 13 39-51 15-27 (55)
134 PRK10862 SoxR reducing system 29.5 58 0.0013 23.1 2.6 15 42-56 59-73 (154)
135 MTH00076 COX2 cytochrome c oxi 29.3 2.5E+02 0.0054 21.2 6.4 58 39-111 141-198 (228)
136 PRK01777 hypothetical protein; 29.2 38 0.00082 22.2 1.5 24 27-50 50-73 (95)
137 MTH00117 COX2 cytochrome c oxi 28.5 2.4E+02 0.0052 21.2 6.0 57 39-110 141-197 (227)
138 KOG3201|consensus 28.1 19 0.0004 26.6 -0.1 9 2-10 109-117 (201)
139 PRK08364 sulfur carrier protei 27.8 55 0.0012 19.8 2.0 24 27-50 40-63 (70)
140 PRK09838 periplasmic copper-bi 27.8 92 0.002 21.1 3.3 21 41-62 88-108 (115)
141 cd05886 Ig1_Nectin-1_like Firs 27.3 1.8E+02 0.0038 18.8 7.0 45 22-70 28-72 (99)
142 cd04462 S1_RNAPII_Rpb7 S1_RNAP 27.1 99 0.0021 19.6 3.2 20 38-57 52-71 (88)
143 PRK06488 sulfur carrier protei 26.4 67 0.0014 18.9 2.2 25 26-50 30-58 (65)
144 PF14977 FAM194: FAM194 protei 26.3 2.8E+02 0.0062 20.8 6.5 44 14-57 86-132 (208)
145 PF04246 RseC_MucC: Positive r 26.1 78 0.0017 21.5 2.8 17 39-55 49-65 (135)
146 PF11142 DUF2917: Protein of u 26.0 1.5E+02 0.0033 17.7 3.7 15 36-50 42-56 (63)
147 PF09962 DUF2196: Uncharacteri 26.0 62 0.0014 19.7 1.9 35 42-79 9-55 (62)
148 PF07705 CARDB: CARDB; InterP 25.9 1.6E+02 0.0035 17.9 5.7 24 86-109 56-81 (101)
149 TIGR03833 conserved hypothetic 25.6 75 0.0016 19.3 2.2 17 60-79 38-54 (62)
150 PLN02303 urease 25.1 2.2E+02 0.0047 26.0 5.9 59 40-99 143-213 (837)
151 MTH00080 COX2 cytochrome c oxi 25.1 2.8E+02 0.0062 21.0 5.9 56 40-110 145-200 (231)
152 TIGR01451 B_ant_repeat conserv 24.6 53 0.0012 18.8 1.4 21 86-106 7-27 (53)
153 PF00868 Transglut_N: Transglu 24.0 1.3E+02 0.0029 20.1 3.5 19 35-53 22-40 (118)
154 cd08069 MPN_RPN11_CSN5 Mov34/M 23.8 75 0.0016 24.6 2.5 9 104-112 90-98 (268)
155 cd08068 MPN_BRCC36 Mov34/MPN/P 23.7 41 0.0009 25.9 1.1 10 104-113 92-101 (244)
156 PRK07696 sulfur carrier protei 23.7 79 0.0017 18.9 2.2 26 26-51 32-61 (67)
157 PF04170 NlpE: NlpE N-terminal 23.6 1.3E+02 0.0028 19.0 3.2 32 2-38 7-38 (87)
158 PRK14868 DNA topoisomerase VI 23.1 2.8E+02 0.0061 25.2 6.1 59 44-103 709-777 (795)
159 PF08116 Toxin_29: PhTx neurot 23.1 53 0.0012 16.9 1.1 17 3-19 1-17 (31)
160 PF15436 PGBA_N: Plasminogen-b 23.1 63 0.0014 24.5 1.9 24 32-55 70-93 (218)
161 KOG1555|consensus 22.9 40 0.00087 27.0 0.9 11 104-114 118-128 (316)
162 cd08067 MPN_2A_DUB Mov34/MPN/P 22.7 44 0.00095 24.5 1.0 11 104-114 82-92 (187)
163 PF10949 DUF2777: Protein of u 22.2 2.1E+02 0.0045 21.2 4.4 39 14-52 46-87 (185)
164 PF07385 DUF1498: Protein of u 22.1 2.1E+02 0.0047 21.8 4.6 31 14-50 136-166 (225)
165 COG1310 Predicted metal-depend 21.9 51 0.0011 22.3 1.2 11 104-114 72-82 (134)
166 cd04486 YhcR_OBF_like YhcR_OBF 21.9 62 0.0014 20.1 1.5 12 40-51 43-54 (78)
167 smart00207 TNF Tumour necrosis 21.8 84 0.0018 21.0 2.2 21 34-54 87-107 (125)
168 TIGR01683 thiS thiamine biosyn 21.2 1.3E+02 0.0028 17.6 2.7 27 25-51 28-58 (64)
169 KOG4063|consensus 21.2 3.3E+02 0.0071 19.7 5.9 64 36-99 46-122 (158)
170 cd02558 PSRA_1 PSRA_1: Pseudou 20.8 88 0.0019 23.6 2.4 25 28-52 3-27 (246)
171 COG3354 FlaG Putative archaeal 20.6 3.3E+02 0.0072 19.5 5.4 44 13-57 87-133 (154)
172 PF03743 TrbI: Bacterial conju 20.4 1E+02 0.0022 21.9 2.5 17 37-53 166-182 (187)
173 PF01345 DUF11: Domain of unkn 20.2 69 0.0015 19.2 1.4 19 86-104 36-54 (76)
No 1
>PF07732 Cu-oxidase_3: Multicopper oxidase; InterPro: IPR011707 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 3 (or coupled binuclear) domains. ; GO: 0005507 copper ion binding; PDB: 2QT6_B 3KW7_B 2R7E_A 3CDZ_A 1SDD_A 3G5W_D 3UAC_A 2YXV_A 3OD3_A 3NSY_A ....
Probab=100.00 E-value=2.4e-37 Score=212.26 Aligned_cols=109 Identities=44% Similarity=0.846 Sum_probs=100.9
Q ss_pred ceEeecCCceEEEEEECCCCCCCeEEEecCCEEEEEEEcCCCCCceEEEEeeeeeecCCCCCCCcccceeeeCCCCEEEE
Q psy16567 16 KGCVTADGFERAILSINRQLPGPSIQVCKGDTIIVDVKNHMIDREVTLHWHGVYQKVTPWMDGVPMVTQCPIPSSTTFRY 95 (127)
Q Consensus 16 ~~~v~~~G~~~~~~~~ng~~pgP~i~v~~Gd~v~v~~~N~~~~~~~siH~HG~~~~~~~~~DG~~~~~~~~i~PG~~~~y 95 (127)
+..+.++|..+++|+|||++|||+|++++||+|+|+|+|.++ .+++|||||+++...+|+||++..++++|.||++++|
T Consensus 4 ~~~~~~~~~~~~~~~~ng~~pGPtI~v~~Gd~v~i~~~N~l~-~~~siH~HG~~~~~~~~~DG~~~~~~~~i~pG~~~~Y 82 (117)
T PF07732_consen 4 ETTVSPDGGTRKVWTYNGQFPGPTIRVREGDTVRITVTNNLD-EPTSIHWHGLHQPPSPWMDGVPGVTQCPIAPGESFTY 82 (117)
T ss_dssp EEEEETTSTEEEEEEETTBSSEEEEEEETTEEEEEEEEEESS-SGBSEEEETSBSTTGGGGSGGTTTSGSSBSTTEEEEE
T ss_pred EEEEEeCCcEEEEEEECCCCCCCEEEEEcCCeeEEEEEeccc-cccccccceeeeeeeeecCCcccccceeEEeecceee
Confidence 456778888899999999999999999999999999999998 8999999999998877899999999999999999999
Q ss_pred EEeCCC-ceeeEEccCCCCCc----eeeEEEEcCC
Q psy16567 96 KFPAMP-SGTFFYHSHVDRRP----YCPEIEEKKK 125 (127)
Q Consensus 96 ~~~~~~-~Gt~~yH~H~~~~~----~g~liV~d~~ 125 (127)
+|++++ +||||||||...+. +|+|||++++
T Consensus 83 ~~~~~~~~Gt~wYH~H~~~~~~~GL~G~~iV~~~~ 117 (117)
T PF07732_consen 83 EFTANQQAGTYWYHSHVHGQQVMGLYGAIIVEPPE 117 (117)
T ss_dssp EEEESSCSEEEEEEECSTTHHHTTEEEEEEEE-TT
T ss_pred eEeeeccccceeEeeCCCchhcCcCEEEEEEcCCC
Confidence 999987 99999999998874 9999999874
No 2
>PLN02835 oxidoreductase
Probab=100.00 E-value=1.2e-33 Score=235.04 Aligned_cols=107 Identities=31% Similarity=0.616 Sum_probs=100.5
Q ss_pred ceEeecCCceEEEEEECCCCCCCeEEEecCCEEEEEEEcCCCCCceEEEEeeeeeecCCCCCCCcccceeeeCCCCEEEE
Q psy16567 16 KGCVTADGFERAILSINRQLPGPSIQVCKGDTIIVDVKNHMIDREVTLHWHGVYQKVTPWMDGVPMVTQCPIPSSTTFRY 95 (127)
Q Consensus 16 ~~~v~~~G~~~~~~~~ng~~pgP~i~v~~Gd~v~v~~~N~~~~~~~siH~HG~~~~~~~~~DG~~~~~~~~i~PG~~~~y 95 (127)
...+.+||+++.+|+|||++|||+|++++||+|+|+|+|+++ ++++|||||++++..+|+||++. +||+|+||++|+|
T Consensus 38 ~~~~~~dg~~~~~~~~NG~~PGP~I~~~~GD~v~v~v~N~L~-~~ttiHWHGl~~~~~~~~DGv~~-tQ~pI~PG~sf~Y 115 (539)
T PLN02835 38 YGTISPLGVPQQVILINGQFPGPRLDVVTNDNIILNLINKLD-QPFLLTWNGIKQRKNSWQDGVLG-TNCPIPPNSNYTY 115 (539)
T ss_pred EEEeccCCeEEEEEEECCcCCCCCEEEECCCEEEEEEEeCCC-CCCcEEeCCcccCCCCCCCCCcc-CcCCCCCCCcEEE
Confidence 357788999999999999999999999999999999999999 89999999999998889999998 8999999999999
Q ss_pred EEeC-CCceeeEEccCCCCCc----eeeEEEEcC
Q psy16567 96 KFPA-MPSGTFFYHSHVDRRP----YCPEIEEKK 124 (127)
Q Consensus 96 ~~~~-~~~Gt~~yH~H~~~~~----~g~liV~d~ 124 (127)
+|++ +++||||||+|...|+ +|+|||+++
T Consensus 116 ~F~~~~q~GT~WYHsH~~~q~~~Gl~G~lIV~~~ 149 (539)
T PLN02835 116 KFQTKDQIGTFTYFPSTLFHKAAGGFGAINVYER 149 (539)
T ss_pred EEEECCCCEeEEEEeCccchhcCcccceeEEeCC
Confidence 9986 6899999999998886 999999753
No 3
>PLN02168 copper ion binding / pectinesterase
Probab=100.00 E-value=1.3e-33 Score=234.82 Aligned_cols=108 Identities=25% Similarity=0.491 Sum_probs=102.0
Q ss_pred ceEeecCCceEEEEEECCCCCCCeEEEecCCEEEEEEEcCCCCCceEEEEeeeeeecCCCCCCCcccceeeeCCCCEEEE
Q psy16567 16 KGCVTADGFERAILSINRQLPGPSIQVCKGDTIIVDVKNHMIDREVTLHWHGVYQKVTPWMDGVPMVTQCPIPSSTTFRY 95 (127)
Q Consensus 16 ~~~v~~~G~~~~~~~~ng~~pgP~i~v~~Gd~v~v~~~N~~~~~~~siH~HG~~~~~~~~~DG~~~~~~~~i~PG~~~~y 95 (127)
...+.+||+++.+|+|||++|||+|++++||+|+|++.|+++ ++++|||||+++...+|+||++. +||||+||++|+|
T Consensus 35 ~~~~~pdG~~~~~~~vNG~~PGP~I~~~~GD~v~V~v~N~L~-~~ttiHWHGl~~~~~~~~DGv~g-tQcpI~PG~sftY 112 (545)
T PLN02168 35 YSQRFILGGNKQVIVINDMFPGPLLNATANDVINVNIFNNLT-EPFLMTWNGLQLRKNSWQDGVRG-TNCPILPGTNWTY 112 (545)
T ss_pred EEEecCCCeEEEEEEECCcCCCCcEEEECCCEEEEEEEeCCC-CCccEeeCCccCCCCCCcCCCCC-CcCCCCCCCcEEE
Confidence 346789999999999999999999999999999999999999 89999999999999899999998 9999999999999
Q ss_pred EEeC-CCceeeEEccCCCCCc----eeeEEEEcCC
Q psy16567 96 KFPA-MPSGTFFYHSHVDRRP----YCPEIEEKKK 125 (127)
Q Consensus 96 ~~~~-~~~Gt~~yH~H~~~~~----~g~liV~d~~ 125 (127)
+|++ +++||||||+|...|+ +|+|||++++
T Consensus 113 ~F~~~~q~GT~WYHsH~~~Q~~~GL~G~lII~~~~ 147 (545)
T PLN02168 113 RFQVKDQIGSYFYFPSLLLQKAAGGYGAIRIYNPE 147 (545)
T ss_pred EEEeCCCCceEEEecChhhhhhCcceeEEEEcCCc
Confidence 9999 5899999999998886 9999999865
No 4
>TIGR03389 laccase laccase, plant. Members of this protein family include the copper-containing enzyme laccase (EC 1.10.3.2), often several from a single plant species, and additional, uncharacterized, closely related plant proteins termed laccase-like multicopper oxidases. This protein family shows considerable sequence similarity to the L-ascorbate oxidase (EC 1.10.3.3) family. Laccases are enzymes of rather broad specificity, and classification of all proteins scoring about the trusted cutoff of this model as laccases may be appropriate.
Probab=100.00 E-value=1.9e-33 Score=233.82 Aligned_cols=108 Identities=36% Similarity=0.675 Sum_probs=101.8
Q ss_pred eEeecCCceEEEEEECCCCCCCeEEEecCCEEEEEEEcCCCCCceEEEEeeeeeecCCCCCCCcccceeeeCCCCEEEEE
Q psy16567 17 GCVTADGFERAILSINRQLPGPSIQVCKGDTIIVDVKNHMIDREVTLHWHGVYQKVTPWMDGVPMVTQCPIPSSTTFRYK 96 (127)
Q Consensus 17 ~~v~~~G~~~~~~~~ng~~pgP~i~v~~Gd~v~v~~~N~~~~~~~siH~HG~~~~~~~~~DG~~~~~~~~i~PG~~~~y~ 96 (127)
..+.+||+++.+|+|||++|||+|++++||+|+|+|.|+++ .+++|||||+++...+|+||++.++||+|.||++++|+
T Consensus 13 ~~~~pdG~~~~~~~~NG~~PGP~i~~~~GD~v~v~v~N~l~-~~tsiHwHGl~q~~~~~~DGv~~vTq~pI~PG~s~~Y~ 91 (539)
T TIGR03389 13 KNVTRLCSTKSILTVNGKFPGPTLYAREGDTVIVNVTNNVQ-YNVTIHWHGVRQLRNGWADGPAYITQCPIQPGQSYVYN 91 (539)
T ss_pred EEeccCCcEeEEEEECCcccCCEEEEEcCCEEEEEEEeCCC-CCeeEecCCCCCCCCCCCCCCcccccCCcCCCCeEEEE
Confidence 35789999999999999999999999999999999999999 89999999999988889999999999999999999999
Q ss_pred EeC-CCceeeEEccCCCCCc---eeeEEEEcCC
Q psy16567 97 FPA-MPSGTFFYHSHVDRRP---YCPEIEEKKK 125 (127)
Q Consensus 97 ~~~-~~~Gt~~yH~H~~~~~---~g~liV~d~~ 125 (127)
|++ +++||||||||...++ +|+|||+++.
T Consensus 92 f~~~~~~GT~WYHsH~~~~~~Gl~G~lIV~~~~ 124 (539)
T TIGR03389 92 FTITGQRGTLWWHAHISWLRATVYGAIVILPKP 124 (539)
T ss_pred EEecCCCeeEEEecCchhhhccceEEEEEcCCC
Confidence 998 5999999999997665 9999999865
No 5
>PLN02354 copper ion binding / oxidoreductase
Probab=100.00 E-value=1.5e-33 Score=234.89 Aligned_cols=108 Identities=31% Similarity=0.637 Sum_probs=101.9
Q ss_pred ceEeecCCceEEEEEECCCCCCCeEEEecCCEEEEEEEcCCCCCceEEEEeeeeeecCCCCCCCcccceeeeCCCCEEEE
Q psy16567 16 KGCVTADGFERAILSINRQLPGPSIQVCKGDTIIVDVKNHMIDREVTLHWHGVYQKVTPWMDGVPMVTQCPIPSSTTFRY 95 (127)
Q Consensus 16 ~~~v~~~G~~~~~~~~ng~~pgP~i~v~~Gd~v~v~~~N~~~~~~~siH~HG~~~~~~~~~DG~~~~~~~~i~PG~~~~y 95 (127)
...+.+||+++.+|+|||++|||+|++++||+|+|+|.|+++ ++++|||||+++...+|+||++. +||+|.||++|+|
T Consensus 36 ~~~~~pdG~~r~~~~iNGq~PGP~I~~~~GD~v~V~v~N~l~-~~ttiHWHGi~q~~~~~~DGv~~-TQcpI~PG~sf~Y 113 (552)
T PLN02354 36 YGTASPLGVPQQVILINGQFPGPNINSTSNNNIVINVFNNLD-EPFLLTWSGIQQRKNSWQDGVPG-TNCPIPPGTNFTY 113 (552)
T ss_pred EEEecCCCeEEEEEEECCCCcCCcEEEeCCCEEEEEEEECCC-CCcccccccccCCCCcccCCCcC-CcCCCCCCCcEEE
Confidence 346789999999999999999999999999999999999998 89999999999998899999998 9999999999999
Q ss_pred EEeC-CCceeeEEccCCCCCc----eeeEEEEcCC
Q psy16567 96 KFPA-MPSGTFFYHSHVDRRP----YCPEIEEKKK 125 (127)
Q Consensus 96 ~~~~-~~~Gt~~yH~H~~~~~----~g~liV~d~~ 125 (127)
+|++ +++||||||+|...|+ +|+|||++++
T Consensus 114 ~F~~~~q~GT~WYHsH~~~Q~~~Gl~G~lII~~~~ 148 (552)
T PLN02354 114 HFQPKDQIGSYFYYPSTGMHRAAGGFGGLRVNSRL 148 (552)
T ss_pred EEEeCCCCcceEEecCccceecCCccceEEEcCCc
Confidence 9998 5899999999999887 9999999764
No 6
>PLN02191 L-ascorbate oxidase
Probab=100.00 E-value=2.9e-33 Score=234.19 Aligned_cols=108 Identities=40% Similarity=0.733 Sum_probs=101.6
Q ss_pred eEeecCCceEEEEEECCCCCCCeEEEecCCEEEEEEEcCCCCCceEEEEeeeeeecCCCCCCCcccceeeeCCCCEEEEE
Q psy16567 17 GCVTADGFERAILSINRQLPGPSIQVCKGDTIIVDVKNHMIDREVTLHWHGVYQKVTPWMDGVPMVTQCPIPSSTTFRYK 96 (127)
Q Consensus 17 ~~v~~~G~~~~~~~~ng~~pgP~i~v~~Gd~v~v~~~N~~~~~~~siH~HG~~~~~~~~~DG~~~~~~~~i~PG~~~~y~ 96 (127)
..+.+||+++.+|+|||++|||+|++++||+|+|+|.|+++..+++|||||+++...+|+||+++++|++|.||++++|+
T Consensus 33 ~~~~pdG~~~~v~~vNg~~pGP~i~~~~Gd~v~v~v~N~l~~~~tsiHwHGl~~~~~~~~DGv~gvtq~pI~PG~s~~Y~ 112 (574)
T PLN02191 33 KYWWPDCKEGAVMTVNGQFPGPTIDAVAGDTIVVHLTNKLTTEGLVIHWHGIRQKGSPWADGAAGVTQCAINPGETFTYK 112 (574)
T ss_pred EEeccCCceeeEEEECCcCCCCeEEEEcCCEEEEEEEECCCCCCccEECCCCCCCCCccccCCCccccCCcCCCCeEEEE
Confidence 36789999999999999999999999999999999999987468999999999998889999999999999999999999
Q ss_pred EeCCCceeeEEccCCCCCc----eeeEEEEcC
Q psy16567 97 FPAMPSGTFFYHSHVDRRP----YCPEIEEKK 124 (127)
Q Consensus 97 ~~~~~~Gt~~yH~H~~~~~----~g~liV~d~ 124 (127)
|+++++||||||||...|+ +|+|||+++
T Consensus 113 f~~~~~GT~wYHsH~~~q~~~Gl~G~liV~~~ 144 (574)
T PLN02191 113 FTVEKPGTHFYHGHYGMQRSAGLYGSLIVDVA 144 (574)
T ss_pred EECCCCeEEEEeeCcHHHHhCCCEEEEEEccC
Confidence 9999999999999998876 999999854
No 7
>PLN02991 oxidoreductase
Probab=100.00 E-value=4.1e-33 Score=231.78 Aligned_cols=108 Identities=25% Similarity=0.517 Sum_probs=101.2
Q ss_pred ceEeecCCceEEEEEECCCCCCCeEEEecCCEEEEEEEcCCCCCceEEEEeeeeeecCCCCCCCcccceeeeCCCCEEEE
Q psy16567 16 KGCVTADGFERAILSINRQLPGPSIQVCKGDTIIVDVKNHMIDREVTLHWHGVYQKVTPWMDGVPMVTQCPIPSSTTFRY 95 (127)
Q Consensus 16 ~~~v~~~G~~~~~~~~ng~~pgP~i~v~~Gd~v~v~~~N~~~~~~~siH~HG~~~~~~~~~DG~~~~~~~~i~PG~~~~y 95 (127)
...+.+||.++.+|+|||++|||+|++++||+|+|+|.|+++ ++++|||||+++...+|+||++. +||+|+||++|+|
T Consensus 37 ~~~~~pdG~~r~~~~vNG~~PGP~I~~~~GD~v~V~V~N~L~-~~ttiHWHGi~q~~~~~~DGv~~-tQcpI~PG~sftY 114 (543)
T PLN02991 37 YGNISPLGVAQQGILINGKFPGPDIISVTNDNLIINVFNHLD-EPFLISWSGIRNWRNSYQDGVYG-TTCPIPPGKNYTY 114 (543)
T ss_pred EEEeCCCCEEEEEEEEcCCCCCCcEEEECCCEEEEEecCCCC-CCccEEECCcccCCCccccCCCC-CCCccCCCCcEEE
Confidence 346789999999999999999999999999999999999998 89999999999988889999987 8999999999999
Q ss_pred EEeC-CCceeeEEccCCCCCc----eeeEEEEcCC
Q psy16567 96 KFPA-MPSGTFFYHSHVDRRP----YCPEIEEKKK 125 (127)
Q Consensus 96 ~~~~-~~~Gt~~yH~H~~~~~----~g~liV~d~~ 125 (127)
+|++ +++||||||+|...|+ +|+|||+++.
T Consensus 115 ~F~~~~q~GT~WYHsH~~~q~~~Gl~G~lIV~~~~ 149 (543)
T PLN02991 115 ALQVKDQIGSFYYFPSLGFHKAAGGFGAIRISSRP 149 (543)
T ss_pred EEEeCCCCcceEEecCcchhhhCCCeeeEEEeCCc
Confidence 9999 5899999999998876 9999999753
No 8
>TIGR03390 ascorbOXfungal L-ascorbate oxidase, fungal type. This model describes a family of fungal ascorbate oxidases, within a larger family of multicopper oxidases that also includes plant ascorbate oxidases (TIGR03388), plant laccases and laccase-like proteins (TIGR03389), and related proteins. The member from Acremonium sp. HI-25 is characterized.
Probab=100.00 E-value=6.4e-33 Score=230.70 Aligned_cols=110 Identities=35% Similarity=0.669 Sum_probs=102.3
Q ss_pred ceEeecCCceEEEEEECCCCCCCeEEEecCCEEEEEEEcCCCCCceEEEEeeeeeecCCCCCCCcccceeeeCCCCEEEE
Q psy16567 16 KGCVTADGFERAILSINRQLPGPSIQVCKGDTIIVDVKNHMIDREVTLHWHGVYQKVTPWMDGVPMVTQCPIPSSTTFRY 95 (127)
Q Consensus 16 ~~~v~~~G~~~~~~~~ng~~pgP~i~v~~Gd~v~v~~~N~~~~~~~siH~HG~~~~~~~~~DG~~~~~~~~i~PG~~~~y 95 (127)
...+.+||+++.+|+|||++|||+|++++||+|+|+|.|.+++.+++|||||+++...+|+||++.++||+|.||++++|
T Consensus 17 ~~~~~~~g~~r~~~~~NG~~PGP~I~~~~GD~v~V~v~N~L~~~~ttiHwHGi~~~~~~~~DGvp~vTQcpI~PG~sf~Y 96 (538)
T TIGR03390 17 SDNIKIACSSRYSVVVNGTSPGPEIRLQEGQTTWIRVYNDIPDNNVTMHWHGLTQRTAPFSDGTPLASQWPIPPGHFFDY 96 (538)
T ss_pred EeEeccCCeEEEEEEECCcCCCCeEEEeCCCEEEEEEEECCCCCCceEECCCCCCCCCCCCCCCcccccCCCCCCCcEEE
Confidence 44677999999999999999999999999999999999998657899999999998888999999999999999999999
Q ss_pred EEeC--CCceeeEEccCCCCCc---eeeEEEEcCC
Q psy16567 96 KFPA--MPSGTFFYHSHVDRRP---YCPEIEEKKK 125 (127)
Q Consensus 96 ~~~~--~~~Gt~~yH~H~~~~~---~g~liV~d~~ 125 (127)
+|++ +++||||||||...|+ +|+|||++++
T Consensus 97 ~f~~~~~q~GT~WYHsH~~~Q~~~l~G~lIV~~~~ 131 (538)
T TIGR03390 97 EIKPEPGDAGSYFYHSHVGFQAVTAFGPLIVEDCE 131 (538)
T ss_pred EEEecCCCCeeeEEecCCchhhhcceeEEEEccCC
Confidence 9997 4899999999998886 9999999764
No 9
>PLN00044 multi-copper oxidase-related protein; Provisional
Probab=100.00 E-value=8.5e-33 Score=231.61 Aligned_cols=108 Identities=30% Similarity=0.585 Sum_probs=100.4
Q ss_pred ceEeecCC--ceEEEEEECCCCCCCeEEEecCCEEEEEEEcCCCCCceEEEEeeeeeecCCCCCCCcccceeeeCCCCEE
Q psy16567 16 KGCVTADG--FERAILSINRQLPGPSIQVCKGDTIIVDVKNHMIDREVTLHWHGVYQKVTPWMDGVPMVTQCPIPSSTTF 93 (127)
Q Consensus 16 ~~~v~~~G--~~~~~~~~ng~~pgP~i~v~~Gd~v~v~~~N~~~~~~~siH~HG~~~~~~~~~DG~~~~~~~~i~PG~~~ 93 (127)
...+.+|| .++.+++|||++|||+|++++||+|+|+|.|+++ ++++|||||++++..+|+||++. +||||+||++|
T Consensus 36 ~~~~~pdg~~~~~~vi~vNGq~PGPtI~~~~GD~v~V~V~N~L~-~~ttIHWHGl~q~~t~w~DGv~~-TQcPI~PG~sf 113 (596)
T PLN00044 36 YVSAAPLGGVKKQEAIGINGQFPGPALNVTTNWNLVVNVRNALD-EPLLLTWHGVQQRKSAWQDGVGG-TNCAIPAGWNW 113 (596)
T ss_pred EEEEccCCCceeeEEEEEcCcCCCCcEEEECCCEEEEEEEeCCC-CCccEEECCccCCCCccccCCCC-CcCCcCCCCcE
Confidence 44678898 5568999999999999999999999999999999 89999999999998899999987 99999999999
Q ss_pred EEEEeC-CCceeeEEccCCCCCc----eeeEEEEcCC
Q psy16567 94 RYKFPA-MPSGTFFYHSHVDRRP----YCPEIEEKKK 125 (127)
Q Consensus 94 ~y~~~~-~~~Gt~~yH~H~~~~~----~g~liV~d~~ 125 (127)
+|+|++ +++||||||+|...|+ +|+|||++++
T Consensus 114 tY~F~~~dq~GT~WYHsH~~~Q~~~Gl~GalII~~~~ 150 (596)
T PLN00044 114 TYQFQVKDQVGSFFYAPSTALHRAAGGYGAITINNRD 150 (596)
T ss_pred EEEEEeCCCCceeEeeccchhhhhCcCeeEEEEcCcc
Confidence 999999 5899999999999986 9999999764
No 10
>PLN02792 oxidoreductase
Probab=100.00 E-value=1.3e-32 Score=228.69 Aligned_cols=106 Identities=28% Similarity=0.554 Sum_probs=99.5
Q ss_pred ceEeecCCceEEEEEECCCCCCCeEEEecCCEEEEEEEcCCCCCceEEEEeeeeeecCCCCCCCcccceeeeCCCCEEEE
Q psy16567 16 KGCVTADGFERAILSINRQLPGPSIQVCKGDTIIVDVKNHMIDREVTLHWHGVYQKVTPWMDGVPMVTQCPIPSSTTFRY 95 (127)
Q Consensus 16 ~~~v~~~G~~~~~~~~ng~~pgP~i~v~~Gd~v~v~~~N~~~~~~~siH~HG~~~~~~~~~DG~~~~~~~~i~PG~~~~y 95 (127)
...+.+||.++.+|+|||++|||+|++++||+|+|+|.|+++ ++++|||||+++...+|+||++. +||||+||++|+|
T Consensus 25 ~~~~~pdg~~~~~~~vNGq~PGP~I~~~~GD~v~V~v~N~L~-~~ttiHWHGl~q~~~~~~DGv~~-tqcPI~PG~sftY 102 (536)
T PLN02792 25 YGNISLLTLPRRGILINGQFPGPEIRSLTNDNLVINVHNDLD-EPFLLSWNGVHMRKNSYQDGVYG-TTCPIPPGKNYTY 102 (536)
T ss_pred EEEeCCCCeEEEEEEECCCCCCCcEEEECCCEEEEEEEeCCC-CCcCEeCCCcccCCCCccCCCCC-CcCccCCCCcEEE
Confidence 457789999999999999999999999999999999999999 99999999999999999999977 8899999999999
Q ss_pred EEeC-CCceeeEEccCCCCCc----eeeEEEEc
Q psy16567 96 KFPA-MPSGTFFYHSHVDRRP----YCPEIEEK 123 (127)
Q Consensus 96 ~~~~-~~~Gt~~yH~H~~~~~----~g~liV~d 123 (127)
+|++ +++||||||+|...|+ +|+|||.+
T Consensus 103 ~F~~~~q~GT~WYHsH~~~q~~~Gl~G~liI~~ 135 (536)
T PLN02792 103 DFQVKDQVGSYFYFPSLAVQKAAGGYGSLRIYS 135 (536)
T ss_pred EEEeCCCccceEEecCcchhhhcccccceEEeC
Confidence 9999 5899999999998886 99998865
No 11
>TIGR03388 ascorbase L-ascorbate oxidase, plant type. Members of this protein family are the copper-containing enzyme L-ascorbate oxidase (EC 1.10.3.3), also called ascorbase. This family is found in flowering plants, and shows greater sequence similarity to a family of laccases (EC 1.10.3.2) from plants than to other known ascorbate oxidases.
Probab=99.98 E-value=4e-32 Score=226.06 Aligned_cols=110 Identities=40% Similarity=0.741 Sum_probs=102.6
Q ss_pred ceEeecCCceEEEEEECCCCCCCeEEEecCCEEEEEEEcCCCCCceEEEEeeeeeecCCCCCCCcccceeeeCCCCEEEE
Q psy16567 16 KGCVTADGFERAILSINRQLPGPSIQVCKGDTIIVDVKNHMIDREVTLHWHGVYQKVTPWMDGVPMVTQCPIPSSTTFRY 95 (127)
Q Consensus 16 ~~~v~~~G~~~~~~~~ng~~pgP~i~v~~Gd~v~v~~~N~~~~~~~siH~HG~~~~~~~~~DG~~~~~~~~i~PG~~~~y 95 (127)
...+.+||+++.+|+|||++|||+|++++||+|+|+|.|.+..++++|||||+++...+|+||++.++|++|.||++++|
T Consensus 10 ~~~~~pdG~~~~~~~~Ng~~pGP~i~~~~Gd~v~v~v~N~l~~~~t~iHwHGl~~~~~~~~DG~~~vtq~~I~PG~s~~y 89 (541)
T TIGR03388 10 YEFWSPDCFEKLVIGINGQFPGPTIRAQAGDTIVVELTNKLHTEGVVIHWHGIRQIGTPWADGTAGVTQCAINPGETFIY 89 (541)
T ss_pred EEEecCCCeEeeEEEECCcCCCCeEEEEcCCEEEEEEEECCCCCCccEEecCcCCcCCcccCCCCccccCCcCCCCEEEE
Confidence 34678999999999999999999999999999999999998547899999999998888999999999999999999999
Q ss_pred EEeCCCceeeEEccCCCCCc----eeeEEEEcCC
Q psy16567 96 KFPAMPSGTFFYHSHVDRRP----YCPEIEEKKK 125 (127)
Q Consensus 96 ~~~~~~~Gt~~yH~H~~~~~----~g~liV~d~~ 125 (127)
+|+++++||||||||...|+ +|+|||+++.
T Consensus 90 ~f~~~~~Gt~wyH~H~~~q~~~Gl~G~liV~~~~ 123 (541)
T TIGR03388 90 NFVVDRPGTYFYHGHYGMQRSAGLYGSLIVDVPD 123 (541)
T ss_pred EEEcCCCEEEEEEecchHHhhccceEEEEEecCC
Confidence 99999999999999998775 9999999774
No 12
>PLN02604 oxidoreductase
Probab=99.97 E-value=1.6e-31 Score=223.51 Aligned_cols=110 Identities=38% Similarity=0.746 Sum_probs=102.0
Q ss_pred ceEeecCCceEEEEEECCCCCCCeEEEecCCEEEEEEEcCCCCCceEEEEeeeeeecCCCCCCCcccceeeeCCCCEEEE
Q psy16567 16 KGCVTADGFERAILSINRQLPGPSIQVCKGDTIIVDVKNHMIDREVTLHWHGVYQKVTPWMDGVPMVTQCPIPSSTTFRY 95 (127)
Q Consensus 16 ~~~v~~~G~~~~~~~~ng~~pgP~i~v~~Gd~v~v~~~N~~~~~~~siH~HG~~~~~~~~~DG~~~~~~~~i~PG~~~~y 95 (127)
...+.+||+++.+|+|||++|||+|++++||+|+|+|.|.+..++++|||||+++...+|+||++.+++++|.||++++|
T Consensus 33 ~~~~~pdG~~r~~~~~Ng~~pgP~i~~~~Gd~v~v~v~N~l~~~~~~iH~HG~~~~~~~~~DG~~~~tq~~i~pg~s~~y 112 (566)
T PLN02604 33 YEYKSPDCFKKLVITINGRSPGPTILAQQGDTVIVELKNSLLTENVAIHWHGIRQIGTPWFDGTEGVTQCPILPGETFTY 112 (566)
T ss_pred EEEECCCCceeeEEEECCccCCCcEEEECCCEEEEEEEeCCCCCCCCEEeCCCCCCCCccccCCCccccCccCCCCeEEE
Confidence 34678999999999999999999999999999999999998437899999999988778999999999999999999999
Q ss_pred EEeCCCceeeEEccCCCCCc----eeeEEEEcCC
Q psy16567 96 KFPAMPSGTFFYHSHVDRRP----YCPEIEEKKK 125 (127)
Q Consensus 96 ~~~~~~~Gt~~yH~H~~~~~----~g~liV~d~~ 125 (127)
+|+++++||||||||...|+ +|+|||++++
T Consensus 113 ~f~~~~~Gt~wyH~H~~~q~~~Gl~G~liV~~~~ 146 (566)
T PLN02604 113 EFVVDRPGTYLYHAHYGMQREAGLYGSIRVSLPR 146 (566)
T ss_pred EEEcCCCEEEEEeeCcHHHHhCCCeEEEEEEecC
Confidence 99999999999999998886 9999999763
No 13
>TIGR01480 copper_res_A copper-resistance protein, CopA family. This model represents the CopA copper resistance protein family. CopA is related to laccase (benzenediol:oxygen oxidoreductase) and L-ascorbate oxidase, both copper-containing enzymes. Most members have a typical TAT (twin-arginine translocation) signal sequence with an Arg-Arg pair. Twin-arginine translocation is observed for a large number of periplasmic proteins that cross the inner membrane with metal-containing cofactors already bound. The combination of copper-binding sites and TAT translocation motif suggests a mechansism of resistance by packaging and export.
Probab=99.97 E-value=7.5e-31 Score=219.87 Aligned_cols=107 Identities=36% Similarity=0.677 Sum_probs=99.5
Q ss_pred cceEeecCCceEEEEEECCCCCCCeEEEecCCEEEEEEEcCCCCCceEEEEeeeeeecCCCCCCCcccceeeeCCCCEEE
Q psy16567 15 RKGCVTADGFERAILSINRQLPGPSIQVCKGDTIIVDVKNHMIDREVTLHWHGVYQKVTPWMDGVPMVTQCPIPSSTTFR 94 (127)
Q Consensus 15 ~~~~v~~~G~~~~~~~~ng~~pgP~i~v~~Gd~v~v~~~N~~~~~~~siH~HG~~~~~~~~~DG~~~~~~~~i~PG~~~~ 94 (127)
++..+.++|+.+.+|+|||++|||+|++++||+|+|+|.|+++ .+++|||||+..+. ++||++.+++++|.||++++
T Consensus 53 ~~~~~~~~G~~~~~~~~Ng~~PGP~ir~~~Gd~v~v~v~N~l~-~~tsiHwHGl~~~~--~~DGvP~vt~~~I~PG~s~~ 129 (587)
T TIGR01480 53 GETMVNFTGRARPAITVNGSIPGPLLRWREGDTVRLRVTNTLP-EDTSIHWHGILLPF--QMDGVPGVSFAGIAPGETFT 129 (587)
T ss_pred EEEEEecCCeEEEEEEECCccCCceEEEECCCEEEEEEEcCCC-CCceEEcCCCcCCc--cccCCCcccccccCCCCeEE
Confidence 4556788999999999999999999999999999999999999 89999999998864 69999999999999999999
Q ss_pred EEEeCCCceeeEEccCCCCCc----eeeEEEEcC
Q psy16567 95 YKFPAMPSGTFFYHSHVDRRP----YCPEIEEKK 124 (127)
Q Consensus 95 y~~~~~~~Gt~~yH~H~~~~~----~g~liV~d~ 124 (127)
|+|+++++||||||||...|. +|+|||+++
T Consensus 130 Y~f~~~~~GTyWYHsH~~~q~~~GL~G~lIV~~~ 163 (587)
T TIGR01480 130 YRFPVRQSGTYWYHSHSGFQEQAGLYGPLIIDPA 163 (587)
T ss_pred EEEECCCCeeEEEecCchhHhhccceEEEEECCC
Confidence 999999999999999997775 999999864
No 14
>KOG1263|consensus
Probab=99.96 E-value=1.8e-29 Score=210.22 Aligned_cols=108 Identities=39% Similarity=0.782 Sum_probs=102.2
Q ss_pred ceEeecCCceEEEEEECCCCCCCeEEEecCCEEEEEEEcCCCCCceEEEEeeeeeecCCCCCCCcccceeeeCCCCEEEE
Q psy16567 16 KGCVTADGFERAILSINRQLPGPSIQVCKGDTIIVDVKNHMIDREVTLHWHGVYQKVTPWMDGVPMVTQCPIPSSTTFRY 95 (127)
Q Consensus 16 ~~~v~~~G~~~~~~~~ng~~pgP~i~v~~Gd~v~v~~~N~~~~~~~siH~HG~~~~~~~~~DG~~~~~~~~i~PG~~~~y 95 (127)
...+.++|.+..++++||++|||+|++++||+|.|+|.|.++ ++.+|||||+++...+|+|| +..+||||+||++++|
T Consensus 37 ~~~~s~l~~~~~vi~iNG~fPGP~I~~~~gD~ivV~v~N~~~-~~~sihWhGv~q~kn~w~DG-~~~TqCPI~Pg~~~tY 114 (563)
T KOG1263|consen 37 YGTASPLCVEKQVITINGQFPGPTINAEEGDTIVVNVVNRLD-EPFSIHWHGVRQRKNPWQDG-VYITQCPIQPGENFTY 114 (563)
T ss_pred eeeeccCCccceeEeecCCCCCCeEEEEeCCEEEEEEEeCCC-CceEEEeccccccCCccccC-CccccCCcCCCCeEEE
Confidence 456778889999999999999999999999999999999998 99999999999999999999 8899999999999999
Q ss_pred EEeCC-CceeeEEccCCCCCc----eeeEEEEcCC
Q psy16567 96 KFPAM-PSGTFFYHSHVDRRP----YCPEIEEKKK 125 (127)
Q Consensus 96 ~~~~~-~~Gt~~yH~H~~~~~----~g~liV~d~~ 125 (127)
+|+++ +.||||||+|++.|+ +|+|||.++.
T Consensus 115 ~F~v~~q~GT~~yh~h~~~~Ra~G~~G~liI~~~~ 149 (563)
T KOG1263|consen 115 RFTVKDQIGTLWYHSHVSWQRATGVFGALIINPRP 149 (563)
T ss_pred EEEeCCcceeEEEeeccccccccCceeEEEEcCCc
Confidence 99996 999999999999998 9999998764
No 15
>PRK10965 multicopper oxidase; Provisional
Probab=99.95 E-value=2.7e-28 Score=202.43 Aligned_cols=103 Identities=27% Similarity=0.429 Sum_probs=89.0
Q ss_pred eEeecCC-ceEEEEEECCCCCCCeEEEecCCEEEEEEEcCCCCCceEEEEeeeeeecCCCCCCCcccceeeeCCCCEEEE
Q psy16567 17 GCVTADG-FERAILSINRQLPGPSIQVCKGDTIIVDVKNHMIDREVTLHWHGVYQKVTPWMDGVPMVTQCPIPSSTTFRY 95 (127)
Q Consensus 17 ~~v~~~G-~~~~~~~~ng~~pgP~i~v~~Gd~v~v~~~N~~~~~~~siH~HG~~~~~~~~~DG~~~~~~~~i~PG~~~~y 95 (127)
..+.+++ ..+.+|+|||++|||+|++++||+|+|+|+|.++ .++++||||++++. .+||++ +++|.||++++|
T Consensus 55 ~~~~~~~~~~t~~~~yNg~~PGPtIr~~~Gd~v~v~~~N~L~-~~ttiHwHGl~~~~--~~DG~p---q~~I~PG~s~~Y 128 (523)
T PRK10965 55 GQSSFAGKTATATWGYNGNLLGPAVRLQRGKAVTVDITNQLP-EETTLHWHGLEVPG--EVDGGP---QGIIAPGGKRTV 128 (523)
T ss_pred EEEEecCCceeEEEEECCCCCCceEEEECCCEEEEEEEECCC-CCccEEcccccCCC--ccCCCC---CCCCCCCCEEEE
Confidence 3344433 4567999999999999999999999999999999 89999999999875 489986 679999999999
Q ss_pred EEeCCC-ceeeEEccCCCC----Cc----eeeEEEEcCC
Q psy16567 96 KFPAMP-SGTFFYHSHVDR----RP----YCPEIEEKKK 125 (127)
Q Consensus 96 ~~~~~~-~Gt~~yH~H~~~----~~----~g~liV~d~~ 125 (127)
+|++++ +||||||+|..+ |. +|+|||+|++
T Consensus 129 ~f~~~q~aGT~WYH~H~~g~t~~Qv~~GL~G~lIV~d~~ 167 (523)
T PRK10965 129 TFTVDQPAATCWFHPHQHGKTGRQVAMGLAGLVLIEDDE 167 (523)
T ss_pred EeccCCCCceEEEecCCCCCcHHHHhCcCeEEEEEcCcc
Confidence 999975 799999999743 32 9999999875
No 16
>PRK10883 FtsI repressor; Provisional
Probab=99.94 E-value=7.9e-27 Score=191.73 Aligned_cols=97 Identities=22% Similarity=0.329 Sum_probs=85.4
Q ss_pred CceEEEEEECCCCCCCeEEEecCCEEEEEEEcCCCCCceEEEEeeeeeecCCCCCCCcccceeeeCCCCEEEEEEeCC-C
Q psy16567 23 GFERAILSINRQLPGPSIQVCKGDTIIVDVKNHMIDREVTLHWHGVYQKVTPWMDGVPMVTQCPIPSSTTFRYKFPAM-P 101 (127)
Q Consensus 23 G~~~~~~~~ng~~pgP~i~v~~Gd~v~v~~~N~~~~~~~siH~HG~~~~~~~~~DG~~~~~~~~i~PG~~~~y~~~~~-~ 101 (127)
|+.+.+|+|||++|||+|++++||+|+|++.|.++ .++++||||+++... ..||++ .+|.||++++|+|+++ +
T Consensus 62 g~~~~v~~~ng~~pGPtir~~~Gd~v~v~v~N~L~-~~ttiHwHGl~~~~~-~~~g~~----~~I~PG~~~~y~f~~~~~ 135 (471)
T PRK10883 62 GTKASVWGINGRYLGPTIRVWKGDDVKLIYSNRLT-EPVSMTVSGLQVPGP-LMGGPA----RMMSPNADWAPVLPIRQN 135 (471)
T ss_pred CceeeEEEECCcccCCeEEEECCCEEEEEEEeCCC-CCCceeECCccCCCC-CCCCcc----ccCCCCCeEEEEEecCCC
Confidence 57889999999999999999999999999999999 899999999998764 356653 3699999999999886 5
Q ss_pred ceeeEEccCCCCCc--------eeeEEEEcCC
Q psy16567 102 SGTFFYHSHVDRRP--------YCPEIEEKKK 125 (127)
Q Consensus 102 ~Gt~~yH~H~~~~~--------~g~liV~d~~ 125 (127)
+||||||+|..... +|++||+|+.
T Consensus 136 aGT~WYH~H~~~~t~~qv~~GL~G~lII~d~~ 167 (471)
T PRK10883 136 AATCWYHANTPNRMAQHVYNGLAGMWLVEDEV 167 (471)
T ss_pred ceeeEEccCCCCchhhhHhcCCeEEEEEeCCc
Confidence 89999999986632 9999999875
No 17
>TIGR02376 Cu_nitrite_red nitrite reductase, copper-containing. This family consists of copper-type nitrite reductase. It reduces nitrite to nitric oxide, the first step in denitrification.
Probab=99.93 E-value=9e-26 Score=177.12 Aligned_cols=98 Identities=21% Similarity=0.334 Sum_probs=84.5
Q ss_pred cCCceEEEEEECCCCCCCeEEEecCCEEEEEEEcCCCC-CceEEEEeeeeeecCCCCCCCcccceeeeCCCCEEEEEEeC
Q psy16567 21 ADGFERAILSINRQLPGPSIQVCKGDTIIVDVKNHMID-REVTLHWHGVYQKVTPWMDGVPMVTQCPIPSSTTFRYKFPA 99 (127)
Q Consensus 21 ~~G~~~~~~~~ng~~pgP~i~v~~Gd~v~v~~~N~~~~-~~~siH~HG~~~~~~~~~DG~~~~~~~~i~PG~~~~y~~~~ 99 (127)
.+|.++.+|+|||++|||+|++++||+|+|+|+|.+.. .+|++||||.. ++||.+...+ |.||++++|+|.+
T Consensus 42 ~~G~~~~~~~~nG~~pGP~irv~~Gd~v~v~v~N~~~~~~~h~~h~H~~~-----~~dg~~~~~~--I~PG~t~ty~F~~ 114 (311)
T TIGR02376 42 DDGVTYQAMTFDGSVPGPLIRVHEGDYVELTLINPPTNTMPHNVDFHAAT-----GALGGAALTQ--VNPGETATLRFKA 114 (311)
T ss_pred CCCeEEEEEEECCcccCceEEEECCCEEEEEEEeCCCCCCceeeeecCCC-----ccCCCCccee--ECCCCeEEEEEEc
Confidence 57999999999999999999999999999999999742 58999999963 3677665543 9999999999999
Q ss_pred CCceeeEEccCCCC----Cc----eeeEEEEcCC
Q psy16567 100 MPSGTFFYHSHVDR----RP----YCPEIEEKKK 125 (127)
Q Consensus 100 ~~~Gt~~yH~H~~~----~~----~g~liV~d~~ 125 (127)
+++||||||||... |. +|+|||++++
T Consensus 115 ~~~Gty~YH~H~~~~~~~q~~~Gl~G~liV~~~~ 148 (311)
T TIGR02376 115 TRPGAFVYHCAPPGMVPWHVVSGMNGAIMVLPRE 148 (311)
T ss_pred CCCEEEEEEcCCCCchhHHhhcCcceEEEeeccC
Confidence 99999999999643 42 9999999754
No 18
>COG2132 SufI Putative multicopper oxidases [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.87 E-value=7.5e-22 Score=161.24 Aligned_cols=112 Identities=34% Similarity=0.571 Sum_probs=98.9
Q ss_pred ccCcceEeecCCceEEEEEECCCCCCCeEEEecCCEEEEEEEcCCCCCceEEEEeeeeeecCCCCCCCcccceeeeCCCC
Q psy16567 12 ACRRKGCVTADGFERAILSINRQLPGPSIQVCKGDTIIVDVKNHMIDREVTLHWHGVYQKVTPWMDGVPMVTQCPIPSST 91 (127)
Q Consensus 12 ~~~~~~~v~~~G~~~~~~~~ng~~pgP~i~v~~Gd~v~v~~~N~~~~~~~siH~HG~~~~~~~~~DG~~~~~~~~i~PG~ 91 (127)
...+......++.....|.+||++|+|+|++++||+|+++++|.+. ..+++||||+..+. .+||++...+..+.|++
T Consensus 38 ~~~~~~~~~~~~~~~~~~~~~g~~~gP~i~~~~Gd~v~l~~~N~l~-~~t~vh~HG~~~p~--~~dG~~~~~~~~~~~~~ 114 (451)
T COG2132 38 TAQRAQLAFAPGTGATVWGYNGALPGPTIRVKKGDTVTLDLTNRLL-VDTSVHWHGLPVPG--EMDGVPPLTQIPPGPGE 114 (451)
T ss_pred eecccceeeecCCCceeEEecccccCceEEEecCCEEEEEEEeCCC-CCceEEEcCcccCc--cccCCCcccccCCCCCC
Confidence 3455566677788889999999999999999999999999999987 45999999987763 69998888888899999
Q ss_pred EEEEEEeCCCceeeEEccCCCCCc----eeeEEEEcCCC
Q psy16567 92 TFRYKFPAMPSGTFFYHSHVDRRP----YCPEIEEKKKT 126 (127)
Q Consensus 92 ~~~y~~~~~~~Gt~~yH~H~~~~~----~g~liV~d~~~ 126 (127)
+++|.|+.+.+||||||+|.+.|. +|++||+++.+
T Consensus 115 ~~~y~f~~~~~gT~wyh~H~~~Q~~~Gl~G~~II~~~~~ 153 (451)
T COG2132 115 TPTYTFTQDVPGTYWYHPHTHGQVYDGLAGALIIEDENS 153 (451)
T ss_pred cEEEeecCCCCcceEeccCCCchhhcccceeEEEeCCCC
Confidence 999999999999999999998775 99999998754
No 19
>TIGR01480 copper_res_A copper-resistance protein, CopA family. This model represents the CopA copper resistance protein family. CopA is related to laccase (benzenediol:oxygen oxidoreductase) and L-ascorbate oxidase, both copper-containing enzymes. Most members have a typical TAT (twin-arginine translocation) signal sequence with an Arg-Arg pair. Twin-arginine translocation is observed for a large number of periplasmic proteins that cross the inner membrane with metal-containing cofactors already bound. The combination of copper-binding sites and TAT translocation motif suggests a mechansism of resistance by packaging and export.
Probab=99.86 E-value=1.8e-21 Score=163.52 Aligned_cols=107 Identities=18% Similarity=0.263 Sum_probs=86.0
Q ss_pred cCcceEeecCC-ceEEEEEECCCCCC--CeEEEecCCEEEEEEEcCCCCCceEEEEeeeeeecCCCCCCCcc--cceeee
Q psy16567 13 CRRKGCVTADG-FERAILSINRQLPG--PSIQVCKGDTIIVDVKNHMIDREVTLHWHGVYQKVTPWMDGVPM--VTQCPI 87 (127)
Q Consensus 13 ~~~~~~v~~~G-~~~~~~~~ng~~pg--P~i~v~~Gd~v~v~~~N~~~~~~~siH~HG~~~~~~~~~DG~~~--~~~~~i 87 (127)
..|+..+.+.| .++.+|+|||+.++ +.|++++||+|+|+|.|.+. ++|+|||||+.+.... .||... .....|
T Consensus 471 p~r~~~~~L~g~m~~~~wtiNG~~~~~~~pl~v~~Gervri~l~N~t~-~~HpmHlHG~~f~v~~-~~G~~~~~~dTv~V 548 (587)
T TIGR01480 471 PGREIELHLTGNMERFAWSFDGEAFGLKTPLRFNYGERLRVVLVNDTM-MAHPIHLHGMWSELED-GQGEFQVRKHTVDV 548 (587)
T ss_pred CCceEEEEEcCCCceeEEEECCccCCCCCceEecCCCEEEEEEECCCC-CCcceeEcCceeeeec-CCCcccccCCceee
Confidence 45566666655 67888999999877 46999999999999999998 9999999999775432 355311 123578
Q ss_pred CCCCEEEEEEeCCCceeeEEccCCCCCc----eeeEEE
Q psy16567 88 PSSTTFRYKFPAMPSGTFFYHSHVDRRP----YCPEIE 121 (127)
Q Consensus 88 ~PG~~~~y~~~~~~~Gt~~yH~H~~~~~----~g~liV 121 (127)
.||++++|+|.++++|+||||||...|. ++.+.|
T Consensus 549 ~Pg~t~~~~f~ad~pG~w~~HCH~l~H~~~GM~~~~~v 586 (587)
T TIGR01480 549 PPGGKRSFRVTADALGRWAYHCHMLLHMEAGMFREVTV 586 (587)
T ss_pred CCCCEEEEEEECCCCeEEEEcCCCHHHHhCcCcEEEEe
Confidence 9999999999999999999999997775 666665
No 20
>TIGR03095 rusti_cyanin rusticyanin. Rusticyanin is a blue copper protein, described in an obligate acidophilic chemolithoautroph, Acidithiobacillus ferrooxidans, as an electron transfer protein. It can constitute up to 5 percent of protein in cells grown on Fe(II) and is thought to be part of an electron chain for Fe(II) oxidation, with two c-type cytochromes, an aa3-type cytochrome oxidase, and 02 as terminal electron acceptor. It is rather closely related to sulfocyanin (TIGR03094).
Probab=99.77 E-value=3.7e-18 Score=121.46 Aligned_cols=105 Identities=18% Similarity=0.275 Sum_probs=75.3
Q ss_pred eEeecCCceEEE-------------EEECCCCCCCeEEEecCCEEEEEEEcCCCC--CceEEEEeeeeeecCCCCCCCcc
Q psy16567 17 GCVTADGFERAI-------------LSINRQLPGPSIQVCKGDTIIVDVKNHMID--REVTLHWHGVYQKVTPWMDGVPM 81 (127)
Q Consensus 17 ~~v~~~G~~~~~-------------~~~ng~~pgP~i~v~~Gd~v~v~~~N~~~~--~~~siH~HG~~~~~~~~~DG~~~ 81 (127)
+.|..+|.+..+ +.+++ .++|+|++++||+|+|+|+|.+.+ +.+.||+||...+..+.+||++.
T Consensus 19 ~~v~~~g~~v~v~~~~~~~~~~~~~f~~~~-~~~P~I~v~~Gd~V~v~v~N~~~~~~H~~~I~~~g~~~~~~p~mdG~~~ 97 (148)
T TIGR03095 19 STIYYNNSTTLVVAAGPMPGPSMYSFEIHD-LKNPTIVIPEGVTVHFTVINTDTDSGHNFDISKRGPPYPYMPGMDGLGF 97 (148)
T ss_pred CEEEEcCCEEEEEEEEcCCCCCceeEEecC-CCCCEEEEcCCCEEEEEEEeCCCCccccEEeecCCCccccccccCCCCc
Confidence 556677744432 23345 568999999999999999998641 34555666554433334798887
Q ss_pred cceeeeCC----CCE--EEEEEeCCCceeeEEccCCCCCc----eeeEEEE
Q psy16567 82 VTQCPIPS----STT--FRYKFPAMPSGTFFYHSHVDRRP----YCPEIEE 122 (127)
Q Consensus 82 ~~~~~i~P----G~~--~~y~~~~~~~Gt~~yH~H~~~~~----~g~liV~ 122 (127)
..++++.| |+. .++.|+++++|+||||||...|+ +|+|||+
T Consensus 98 ~~~~~i~p~~~~g~~~~~~~tf~f~~aGtywyhC~~pgH~~~GM~G~iiV~ 148 (148)
T TIGR03095 98 VAGTGFLPPPKSGKFGYTDFTYHFSTAGTYWYLCTYPGHAENGMYGKIVVK 148 (148)
T ss_pred cccCcccCCCCCCccceeEEEEECCCCeEEEEEcCChhHHHCCCEEEEEEC
Confidence 77777766 322 46677777999999999997776 9999995
No 21
>PF07731 Cu-oxidase_2: Multicopper oxidase; InterPro: IPR011706 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 2 domains.; GO: 0005507 copper ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3GDC_C 3ZX1_A 2YAH_A 2YAR_A 2YAQ_A 2YAO_A 2YAM_A 2YAF_A 2YAP_A 2XU9_A ....
Probab=99.51 E-value=4.4e-14 Score=97.97 Aligned_cols=84 Identities=21% Similarity=0.315 Sum_probs=67.0
Q ss_pred CCeEEEecCCEEEEEEEcCCCCCceEEEEeeeeeecCCCCCCCcc---------------cceeeeCCCCEEEEEEeCCC
Q psy16567 37 GPSIQVCKGDTIIVDVKNHMIDREVTLHWHGVYQKVTPWMDGVPM---------------VTQCPIPSSTTFRYKFPAMP 101 (127)
Q Consensus 37 gP~i~v~~Gd~v~v~~~N~~~~~~~siH~HG~~~~~~~~~DG~~~---------------~~~~~i~PG~~~~y~~~~~~ 101 (127)
.+.+.++.|+.++++|.|... .+|++|+||..+.... .++... .....|.|++..+++|.+++
T Consensus 33 ~~~~~~~~g~~v~~~l~N~~~-~~Hp~HlHG~~F~vl~-~~~~~~~~~~~~~~~~~~~~~~DTv~v~~~~~~~i~~~~~~ 110 (138)
T PF07731_consen 33 TPVIEVKNGDVVEIVLQNNGS-MPHPFHLHGHSFQVLG-RGGGPWNPDDTQSYNPENPGWRDTVLVPPGGWVVIRFRADN 110 (138)
T ss_dssp TSEEEEETTSEEEEEEEECTT-SSEEEEETTSEEEEEE-ETTEESTTHCGGCCCSSSSSEESEEEEETTEEEEEEEEETS
T ss_pred cceEEEeCCCEEEEEEECCCC-CccceEEEeeEEEeee-cCCcccccccccccccccCcccccccccceeEEEEEEEeec
Confidence 478999999999999999988 8999999998876433 222221 23445889999999999999
Q ss_pred ceeeEEccCCCCCc----eeeEEEE
Q psy16567 102 SGTFFYHSHVDRRP----YCPEIEE 122 (127)
Q Consensus 102 ~Gt~~yH~H~~~~~----~g~liV~ 122 (127)
+|.|+||||+..+. .+.+.|.
T Consensus 111 ~G~w~~HCHi~~H~~~GM~~~~~v~ 135 (138)
T PF07731_consen 111 PGPWLFHCHILEHEDNGMMAVFVVG 135 (138)
T ss_dssp TEEEEEEESSHHHHHTT-EEEEEEC
T ss_pred ceEEEEEEchHHHHhCCCeEEEEEc
Confidence 99999999997665 6666664
No 22
>TIGR03096 nitroso_cyanin nitrosocyanin. Nitrosocyanin, as described from the obligate chemolithoautotroph Nitrosomonas europaea, is a red copper protein of unknown function with sequence similarity to a number of blue copper redox proteins.
Probab=99.42 E-value=2.4e-12 Score=90.08 Aligned_cols=81 Identities=20% Similarity=0.228 Sum_probs=63.3
Q ss_pred eecCCceEEEE-EECCCCCCCeEEEecCCEEEEEEEcCCCCCceEEEEeeeeeecCCCCCCCcccceeeeCCCCEEEEEE
Q psy16567 19 VTADGFERAIL-SINRQLPGPSIQVCKGDTIIVDVKNHMIDREVTLHWHGVYQKVTPWMDGVPMVTQCPIPSSTTFRYKF 97 (127)
Q Consensus 19 v~~~G~~~~~~-~~ng~~pgP~i~v~~Gd~v~v~~~N~~~~~~~siH~HG~~~~~~~~~DG~~~~~~~~i~PG~~~~y~~ 97 (127)
+...|.....+ ++|+++..+.|+|++||+|+|+|.|..+ .+ |++.... .|. ...|.||++.+++|
T Consensus 41 ~~~~~~~~~~i~a~n~~~~P~~I~VkaGD~Vtl~vtN~d~-~~-----H~f~i~~----~gi----s~~I~pGet~TitF 106 (135)
T TIGR03096 41 LNVEGVTVKNIRAFNVLNEPEALVVKKGTPVKVTVENKSP-IS-----EGFSIDA----YGI----SEVIKAGETKTISF 106 (135)
T ss_pred EEeCCEEEEEEEeeeeEEcCCEEEECCCCEEEEEEEeCCC-Cc-----cceEECC----CCc----ceEECCCCeEEEEE
Confidence 34677777667 9999999999999999999999999876 44 4433321 111 12489999999999
Q ss_pred eCCCceeeEEccCCCC
Q psy16567 98 PAMPSGTFFYHSHVDR 113 (127)
Q Consensus 98 ~~~~~Gt~~yH~H~~~ 113 (127)
+++++|+|+|||-...
T Consensus 107 ~adKpG~Y~y~C~~HP 122 (135)
T TIGR03096 107 KADKAGAFTIWCQLHP 122 (135)
T ss_pred ECCCCEEEEEeCCCCC
Confidence 9999999999996543
No 23
>PLN02835 oxidoreductase
Probab=99.26 E-value=2.1e-11 Score=102.14 Aligned_cols=86 Identities=13% Similarity=-0.024 Sum_probs=64.1
Q ss_pred EEEecCCEEEEEEEcCCCCCceEEEEeeeeeecCCCCCCC--------------cccceeeeCCCCEEEEEEeCCCceee
Q psy16567 40 IQVCKGDTIIVDVKNHMIDREVTLHWHGVYQKVTPWMDGV--------------PMVTQCPIPSSTTFRYKFPAMPSGTF 105 (127)
Q Consensus 40 i~v~~Gd~v~v~~~N~~~~~~~siH~HG~~~~~~~~~DG~--------------~~~~~~~i~PG~~~~y~~~~~~~Gt~ 105 (127)
++++.|+.|+|.|.|... ..|+||+||+.+......+|. +......|.|++....+|.+++||.|
T Consensus 413 ~~~~~~~~Veivi~N~~~-~~HP~HLHGh~F~Vlg~G~g~~~~~~~~~~nl~nP~~RDTv~vp~~gw~~IrF~aDNPG~W 491 (539)
T PLN02835 413 MQTSLHDFLEVVFQNNEK-TMQSWHLDGYDFWVVGYGSGQWTPAKRSLYNLVDALTRHTAQVYPKSWTTILVSLDNQGMW 491 (539)
T ss_pred EEcCCCCEEEEEEECCCC-CCCCCCCCCccEEEEeccCCCCCcccccccCCCCCCccceEEeCCCCEEEEEEECcCCEEe
Confidence 455678899999999887 799999999887644333331 11122347789999999999999999
Q ss_pred EEccCCCCCc----eeeEEEEcCCC
Q psy16567 106 FYHSHVDRRP----YCPEIEEKKKT 126 (127)
Q Consensus 106 ~yH~H~~~~~----~g~liV~d~~~ 126 (127)
++|||+..|. ...++|+++.+
T Consensus 492 l~HCHi~~H~~~Gm~~~~~V~~~~~ 516 (539)
T PLN02835 492 NMRSAIWERQYLGQQFYLRVWNQVH 516 (539)
T ss_pred eeeecchhhhhcccEEEEEEccCCC
Confidence 9999997765 55666666543
No 24
>TIGR03388 ascorbase L-ascorbate oxidase, plant type. Members of this protein family are the copper-containing enzyme L-ascorbate oxidase (EC 1.10.3.3), also called ascorbase. This family is found in flowering plants, and shows greater sequence similarity to a family of laccases (EC 1.10.3.2) from plants than to other known ascorbate oxidases.
Probab=99.17 E-value=1.2e-10 Score=97.52 Aligned_cols=85 Identities=19% Similarity=0.179 Sum_probs=62.6
Q ss_pred EEEecCCEEEEEEEcCCC-----CCceEEEEeeeeeecCCCCCCC---------------cccceeeeCCCCEEEEEEeC
Q psy16567 40 IQVCKGDTIIVDVKNHMI-----DREVTLHWHGVYQKVTPWMDGV---------------PMVTQCPIPSSTTFRYKFPA 99 (127)
Q Consensus 40 i~v~~Gd~v~v~~~N~~~-----~~~~siH~HG~~~~~~~~~DG~---------------~~~~~~~i~PG~~~~y~~~~ 99 (127)
++++.|+.|+|.|.|... ..+|+||+||+.+.......|. +......|.|+.....+|.+
T Consensus 418 ~~~~~g~~Vdivi~n~~~~~~~~~~~HP~HLHGh~F~vlg~g~g~~~~~~~~~~~n~~nP~~RDTv~vp~~gwvvIRF~a 497 (541)
T TIGR03388 418 YRLKFNTTVDVILQNANTLNGNNSETHPWHLHGHDFWVLGYGEGKFRPGVDEKSYNLKNPPLRNTVVIFPYGWTALRFVA 497 (541)
T ss_pred EEecCCCeEEEEEECCccccCCCCCCCcEEecCCceEEEeeccCCCCcccCcccccCCCCCEeceEEeCCCceEEEEEEC
Confidence 788889999999999642 2579999999876543222121 11223347899999999999
Q ss_pred CCceeeEEccCCCCCc---eeeEEEEcC
Q psy16567 100 MPSGTFFYHSHVDRRP---YCPEIEEKK 124 (127)
Q Consensus 100 ~~~Gt~~yH~H~~~~~---~g~liV~d~ 124 (127)
++||.|++|||+..|. .+++|+|.+
T Consensus 498 dNPG~W~~HCHi~~H~~~GM~~~~~e~~ 525 (541)
T TIGR03388 498 DNPGVWAFHCHIEPHLHMGMGVVFAEGV 525 (541)
T ss_pred CCCeEeeeeccchhhhhcccEEEEeccc
Confidence 9999999999999987 455555543
No 25
>TIGR03389 laccase laccase, plant. Members of this protein family include the copper-containing enzyme laccase (EC 1.10.3.2), often several from a single plant species, and additional, uncharacterized, closely related plant proteins termed laccase-like multicopper oxidases. This protein family shows considerable sequence similarity to the L-ascorbate oxidase (EC 1.10.3.3) family. Laccases are enzymes of rather broad specificity, and classification of all proteins scoring about the trusted cutoff of this model as laccases may be appropriate.
Probab=99.17 E-value=1.8e-10 Score=96.52 Aligned_cols=77 Identities=18% Similarity=0.224 Sum_probs=58.8
Q ss_pred eEEEecCCEEEEEEEcCCC--CCceEEEEeeeeeecCCCCCCCc---------------ccceeeeCCCCEEEEEEeCCC
Q psy16567 39 SIQVCKGDTIIVDVKNHMI--DREVTLHWHGVYQKVTPWMDGVP---------------MVTQCPIPSSTTFRYKFPAMP 101 (127)
Q Consensus 39 ~i~v~~Gd~v~v~~~N~~~--~~~~siH~HG~~~~~~~~~DG~~---------------~~~~~~i~PG~~~~y~~~~~~ 101 (127)
+++++.|+.|+|.|.|... ..+|+||+||+.+.......|.. ......|.|+.....+|.+++
T Consensus 416 v~~~~~~~~V~ivi~n~~~~~~~~HP~HLHGh~F~Vlg~g~g~~~~~~~~~~~nl~nP~rRDTv~vp~~g~vvirf~adN 495 (539)
T TIGR03389 416 VVRLKFNSTVELVLQDTSILGSENHPIHLHGYNFFVVGTGFGNFDPKKDPAKFNLVDPPERNTVGVPTGGWAAIRFVADN 495 (539)
T ss_pred EEEecCCCEEEEEEecCCcCCCCCCcEeEcCCceEEEEeccCCCCcccCccccccCCCCeeeeEEcCCCceEEEEEecCC
Confidence 3788899999999999742 14899999998765433222211 112334778999999999999
Q ss_pred ceeeEEccCCCCCc
Q psy16567 102 SGTFFYHSHVDRRP 115 (127)
Q Consensus 102 ~Gt~~yH~H~~~~~ 115 (127)
||.|++|||+..|.
T Consensus 496 PG~W~~HCHi~~H~ 509 (539)
T TIGR03389 496 PGVWFMHCHLEVHT 509 (539)
T ss_pred CeEEEEEecccchh
Confidence 99999999999987
No 26
>COG2132 SufI Putative multicopper oxidases [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.14 E-value=2.2e-10 Score=93.85 Aligned_cols=90 Identities=16% Similarity=0.190 Sum_probs=71.8
Q ss_pred ceEEEEEECCCCCC---CeEEEecCCEEEEEEEcCCCCCceEEEEeeeeeecCCCCC------CCcccceeeeCCCCEEE
Q psy16567 24 FERAILSINRQLPG---PSIQVCKGDTIIVDVKNHMIDREVTLHWHGVYQKVTPWMD------GVPMVTQCPIPSSTTFR 94 (127)
Q Consensus 24 ~~~~~~~~ng~~pg---P~i~v~~Gd~v~v~~~N~~~~~~~siH~HG~~~~~~~~~D------G~~~~~~~~i~PG~~~~ 94 (127)
....+|.+|+.... +.+.++.|+++++++.|... +.|++|.||+.+.... .| -........+.|++...
T Consensus 340 ~~~~~~~~n~~~~~~~~~~~~~~~G~~~~~~i~n~~~-~~HP~HlHg~~F~v~~-~~~~~~~~~~~~kDTv~v~~~~~~~ 417 (451)
T COG2132 340 IGGYVWAINGKAFDDNRVTLIAKAGTRERWVLTNDTP-MPHPFHLHGHFFQVLS-GDAPAPGAAPGWKDTVLVAPGERLL 417 (451)
T ss_pred cccccccccCccCCCCcCceeecCCCEEEEEEECCCC-CccCeEEcCceEEEEe-cCCCcccccCccceEEEeCCCeEEE
Confidence 44577999998655 56899999999999999998 9999999998876433 21 00111233589999999
Q ss_pred EEEeCCCceeeEEccCCCCCc
Q psy16567 95 YKFPAMPSGTFFYHSHVDRRP 115 (127)
Q Consensus 95 y~~~~~~~Gt~~yH~H~~~~~ 115 (127)
++|+++.+|.|+||||...|.
T Consensus 418 v~~~a~~~g~~~~HCH~l~H~ 438 (451)
T COG2132 418 VRFDADYPGPWMFHCHILEHE 438 (451)
T ss_pred EEEeCCCCCceEEeccchhHh
Confidence 999999999999999997775
No 27
>PLN02604 oxidoreductase
Probab=99.13 E-value=2.2e-10 Score=96.47 Aligned_cols=85 Identities=19% Similarity=0.205 Sum_probs=62.7
Q ss_pred EEEecCCEEEEEEEcCCC-----CCceEEEEeeeeeecCCCCCCC---------------cccceeeeCCCCEEEEEEeC
Q psy16567 40 IQVCKGDTIIVDVKNHMI-----DREVTLHWHGVYQKVTPWMDGV---------------PMVTQCPIPSSTTFRYKFPA 99 (127)
Q Consensus 40 i~v~~Gd~v~v~~~N~~~-----~~~~siH~HG~~~~~~~~~DG~---------------~~~~~~~i~PG~~~~y~~~~ 99 (127)
+.++.|+.|+|.|.|..+ ..+|+||+||+.+.......|. +......|.|+.....+|.+
T Consensus 441 ~~~~~~~~Vdivi~n~~~~~~~~~~~HP~HLHGH~F~Vlg~G~G~~~~~~~~~~~nl~nP~rRDTv~vp~~gwvvIRF~a 520 (566)
T PLN02604 441 YRLQFNSTVDIILQNANTMNANNSETHPWHLHGHDFWVLGYGEGKFNMSSDPKKYNLVDPIMKNTVPVHPYGWTALRFRA 520 (566)
T ss_pred EEccCCCeEEEEEECCccccCCCCCCCCEEecCCceEEEEecCCCCCccccccccCCCCCCccceEEeCCCceEEEEEEC
Confidence 788899999999999742 2479999999876543222221 11223347889999999999
Q ss_pred CCceeeEEccCCCCCc---eeeEEEEcC
Q psy16567 100 MPSGTFFYHSHVDRRP---YCPEIEEKK 124 (127)
Q Consensus 100 ~~~Gt~~yH~H~~~~~---~g~liV~d~ 124 (127)
++||.|++|||+..|. ..++++|.+
T Consensus 521 DNPG~WlfHCHI~~Hl~~GM~~v~~e~~ 548 (566)
T PLN02604 521 DNPGVWAFHCHIESHFFMGMGVVFEEGI 548 (566)
T ss_pred CCCeEeeEeecchhHhhcCCEEEEeeCh
Confidence 9999999999999887 445555543
No 28
>PLN02191 L-ascorbate oxidase
Probab=99.08 E-value=5.3e-10 Score=94.38 Aligned_cols=85 Identities=19% Similarity=0.187 Sum_probs=63.4
Q ss_pred EEEecCCEEEEEEEcCC-----CCCceEEEEeeeeeecCCCCCCC---------------cccceeeeCCCCEEEEEEeC
Q psy16567 40 IQVCKGDTIIVDVKNHM-----IDREVTLHWHGVYQKVTPWMDGV---------------PMVTQCPIPSSTTFRYKFPA 99 (127)
Q Consensus 40 i~v~~Gd~v~v~~~N~~-----~~~~~siH~HG~~~~~~~~~DG~---------------~~~~~~~i~PG~~~~y~~~~ 99 (127)
+.++.|+.|+|.|.|.. ....|+||+||+.+-......|. +......+.|+.....+|.+
T Consensus 441 ~~~~~~~~Vdivi~n~~~~~~~~~~~HP~HLHGh~F~Vlg~G~g~~~~~~~~~~~nl~nP~rRDTv~vp~~Gw~vIRf~a 520 (574)
T PLN02191 441 YVFPFNVTVDVIIQNANVLKGVVSEIHPWHLHGHDFWVLGYGDGKFKPGIDEKTYNLKNPPLRNTAILYPYGWTAIRFVT 520 (574)
T ss_pred EEecCCCEEEEEEECCCcccCCCCCCCCEEeCCCCeEEEEecCCCCCcccCcccccCCCCCcCCeEEeCCCCEEEEEEEC
Confidence 56677999999999975 12689999999876533222221 11223347789999999999
Q ss_pred CCceeeEEccCCCCCc---eeeEEEEcC
Q psy16567 100 MPSGTFFYHSHVDRRP---YCPEIEEKK 124 (127)
Q Consensus 100 ~~~Gt~~yH~H~~~~~---~g~liV~d~ 124 (127)
++||.|++|||+..|. .+..++|.+
T Consensus 521 DNPG~Wl~HCHi~~Hl~~Gm~~~~~e~~ 548 (574)
T PLN02191 521 DNPGVWFFHCHIEPHLHMGMGVVFAEGL 548 (574)
T ss_pred CCCEEEEEecCchhhhhcCCEEEEecCh
Confidence 9999999999999987 667777654
No 29
>PLN02354 copper ion binding / oxidoreductase
Probab=99.06 E-value=5.5e-10 Score=93.89 Aligned_cols=75 Identities=11% Similarity=-0.004 Sum_probs=56.6
Q ss_pred EEEecCCEEEEEEEcCCCCCceEEEEeeeeeecCCCCCCC--------------cccceeeeCCCCEEEEEEeCCCceee
Q psy16567 40 IQVCKGDTIIVDVKNHMIDREVTLHWHGVYQKVTPWMDGV--------------PMVTQCPIPSSTTFRYKFPAMPSGTF 105 (127)
Q Consensus 40 i~v~~Gd~v~v~~~N~~~~~~~siH~HG~~~~~~~~~DG~--------------~~~~~~~i~PG~~~~y~~~~~~~Gt~ 105 (127)
++++.|+.|+|.|.|... .+|+||+||+.+-.....+|. +......|.++.....+|.+++||.|
T Consensus 420 ~~~~~~~~VeiVi~n~~~-~~HP~HLHGh~F~Vlg~G~G~~~~~~~~~~nl~nP~rRDTv~vp~~Gw~vIRF~aDNPGvW 498 (552)
T PLN02354 420 LNITFRTFVEIIFENHEK-SMQSWHLDGYSFFAVAVEPGTWTPEKRKNYNLLDAVSRHTVQVYPKSWAAILLTFDNAGMW 498 (552)
T ss_pred EEcCCCCEEEEEEeCCCC-CCCCCcCCCccEEEEeecCCCCCccccccCCcCCCCccceEEeCCCCeEEEEEEecCCeEE
Confidence 566778999999999876 799999999876543322221 11122346788999999999999999
Q ss_pred EEccCCCCCc
Q psy16567 106 FYHSHVDRRP 115 (127)
Q Consensus 106 ~yH~H~~~~~ 115 (127)
++|||+..|.
T Consensus 499 ~~HCHi~~H~ 508 (552)
T PLN02354 499 NIRSENWERR 508 (552)
T ss_pred eeeccccccc
Confidence 9999996543
No 30
>PLN02168 copper ion binding / pectinesterase
Probab=99.06 E-value=8.5e-10 Score=92.64 Aligned_cols=71 Identities=11% Similarity=0.031 Sum_probs=54.7
Q ss_pred EEEecCCEEEEEEEcCCCCCceEEEEeeeeeecCCCCCCC--------------cccceeeeCCCCEEEEEEeCCCceee
Q psy16567 40 IQVCKGDTIIVDVKNHMIDREVTLHWHGVYQKVTPWMDGV--------------PMVTQCPIPSSTTFRYKFPAMPSGTF 105 (127)
Q Consensus 40 i~v~~Gd~v~v~~~N~~~~~~~siH~HG~~~~~~~~~DG~--------------~~~~~~~i~PG~~~~y~~~~~~~Gt~ 105 (127)
++++.|+.|.|.|.|... .+|+||+||+.+-......|. +......+.++.....+|.+++||.|
T Consensus 417 ~~~~~~~~VeiViqn~~~-~~HP~HLHGh~F~Vvg~g~g~~~~~~~~~~Nl~nP~rRDTv~vp~~Gw~vIRF~aDNPG~W 495 (545)
T PLN02168 417 VDIHYKDFYHIVFQNPLF-SLESYHIDGYNFFVVGYGFGAWSESKKAGYNLVDAVSRSTVQVYPYSWTAILIAMDNQGMW 495 (545)
T ss_pred EEecCCCEEEEEEeCCCC-CCCCeeeCCCceEEEECCCCCCCccccccCCCCCCCccceEEeCCCCEEEEEEEccCCeEE
Confidence 677889999999999877 799999999876533222221 11122346789999999999999999
Q ss_pred EEccCC
Q psy16567 106 FYHSHV 111 (127)
Q Consensus 106 ~yH~H~ 111 (127)
++|||+
T Consensus 496 l~HCHi 501 (545)
T PLN02168 496 NVRSQK 501 (545)
T ss_pred eeeecC
Confidence 999997
No 31
>PLN02792 oxidoreductase
Probab=99.06 E-value=9.1e-10 Score=92.32 Aligned_cols=86 Identities=9% Similarity=-0.075 Sum_probs=63.8
Q ss_pred EEEecCCEEEEEEEcCCCCCceEEEEeeeeeecCCCCCCCc--------------ccceeeeCCCCEEEEEEeCCCceee
Q psy16567 40 IQVCKGDTIIVDVKNHMIDREVTLHWHGVYQKVTPWMDGVP--------------MVTQCPIPSSTTFRYKFPAMPSGTF 105 (127)
Q Consensus 40 i~v~~Gd~v~v~~~N~~~~~~~siH~HG~~~~~~~~~DG~~--------------~~~~~~i~PG~~~~y~~~~~~~Gt~ 105 (127)
++++.|+.|+|.|.|... ..|+||+||+.+-.....+|.. ......|.|+.-...+|.+++||.|
T Consensus 405 ~~~~~~~~VeiViqn~~~-~~HP~HLHGh~F~Vvg~G~G~~~~~~~~~~Nl~nP~~RdTv~v~~~gw~aIRf~aDNPGvW 483 (536)
T PLN02792 405 MGAHHNAFLEIIFQNREK-IVQSYHLDGYNFWVVGINKGIWSRASRREYNLKDAISRSTTQVYPESWTAVYVALDNVGMW 483 (536)
T ss_pred EEcCCCCEEEEEEECCCC-CCCCeeeCCCceEEEeecCCCCCcccccccCcCCCCccceEEECCCCEEEEEEEeeCCEEE
Confidence 678889999999999766 7899999998765333222221 1122346789999999999999999
Q ss_pred EEccCCCCCc----eeeEEEEcCCC
Q psy16567 106 FYHSHVDRRP----YCPEIEEKKKT 126 (127)
Q Consensus 106 ~yH~H~~~~~----~g~liV~d~~~ 126 (127)
++|||...+. .-.++|+++.+
T Consensus 484 ~~HCh~~~h~~~Gm~~~~~v~~~~~ 508 (536)
T PLN02792 484 NLRSQFWARQYLGQQFYLRVYSPTH 508 (536)
T ss_pred eeeEcchhccccceEEEEEEccCCC
Confidence 9999998775 44555665544
No 32
>PLN02991 oxidoreductase
Probab=99.03 E-value=1.3e-09 Score=91.44 Aligned_cols=82 Identities=12% Similarity=-0.063 Sum_probs=60.5
Q ss_pred EEEecCCEEEEEEEcCCCCCceEEEEeeeeeecCCCCCCC--------------cccceeeeCCCCEEEEEEeCCCceee
Q psy16567 40 IQVCKGDTIIVDVKNHMIDREVTLHWHGVYQKVTPWMDGV--------------PMVTQCPIPSSTTFRYKFPAMPSGTF 105 (127)
Q Consensus 40 i~v~~Gd~v~v~~~N~~~~~~~siH~HG~~~~~~~~~DG~--------------~~~~~~~i~PG~~~~y~~~~~~~Gt~ 105 (127)
+.++.++.|+|.|.|... .+|+||+||+.+-......|. +......|.++.....+|.+++||.|
T Consensus 412 ~~~~~~~~VeiViqn~~~-~~HP~HLHGh~F~Vvg~G~G~f~~~~~~~~Nl~nP~rRDTv~vp~~Gw~vIRF~aDNPG~W 490 (543)
T PLN02991 412 MQTDYKAFVEIVFENWED-IVQTWHLDGYSFYVVGMELGKWSAASRKVYNLNDAVSRCTVQVYPRSWTAIYVSLDNVGMW 490 (543)
T ss_pred EEcCCCCEEEEEEeCCCC-CCCCeeeCCcceEEEEeCCCCCCcccccccCCCCCCcccEEEECCCCEEEEEEECCCCEEe
Confidence 566789999999999876 799999999876533222221 11122347789999999999999999
Q ss_pred EEccCCCCCc-eeeEEEE
Q psy16567 106 FYHSHVDRRP-YCPEIEE 122 (127)
Q Consensus 106 ~yH~H~~~~~-~g~liV~ 122 (127)
++|||+..+. .|.-+|+
T Consensus 491 ~~HCHi~~h~~~gm~~~~ 508 (543)
T PLN02991 491 NLRSELWERQYLGQQFYM 508 (543)
T ss_pred eeeeCccccccccEEEEE
Confidence 9999996654 5555555
No 33
>PRK10965 multicopper oxidase; Provisional
Probab=99.02 E-value=1.1e-09 Score=91.59 Aligned_cols=91 Identities=15% Similarity=0.076 Sum_probs=63.3
Q ss_pred EEECCCCC---CCeEEEecCCEEEEEEEcCCCCCceEEEEeeeeeecCCCCCCCcc-------cceeeeCCCCEEEEE--
Q psy16567 29 LSINRQLP---GPSIQVCKGDTIIVDVKNHMIDREVTLHWHGVYQKVTPWMDGVPM-------VTQCPIPSSTTFRYK-- 96 (127)
Q Consensus 29 ~~~ng~~p---gP~i~v~~Gd~v~v~~~N~~~~~~~siH~HG~~~~~~~~~DG~~~-------~~~~~i~PG~~~~y~-- 96 (127)
|+|||+.. -|.++++.|++.+++|+|....+.|+||+||+.+.... .||.+. .....|.| ++.++.
T Consensus 414 ~~ING~~~~~~~~~~~~~~G~~e~w~i~N~~~~~~Hp~HlHg~~F~Vl~-~~g~~~~~~~~~wkDTv~v~~-~~~~i~~~ 491 (523)
T PRK10965 414 NKINGKAFDMNKPMFAAKKGQYERWVISGVGDMMLHPFHIHGTQFRILS-ENGKPPAAHRAGWKDTVRVEG-GRSEVLVK 491 (523)
T ss_pred ccCCCeECCCCCcceecCCCCEEEEEEEeCCCCCccCeEEeCcEEEEEE-ecCCCCCccccccccEEEECC-cEEEEEEE
Confidence 58999843 35689999999999999987426899999999876543 455421 11224556 444443
Q ss_pred Ee--CCCceeeEEccCCCCCc----eeeEEE
Q psy16567 97 FP--AMPSGTFFYHSHVDRRP----YCPEIE 121 (127)
Q Consensus 97 ~~--~~~~Gt~~yH~H~~~~~----~g~liV 121 (127)
|. ++.+|.|+||||...|. .+.+.|
T Consensus 492 f~~~~~~~g~~~~HCHiL~Hed~GMM~~~~V 522 (523)
T PRK10965 492 FDHDAPKEHAYMAHCHLLEHEDTGMMLGFTV 522 (523)
T ss_pred ecCCCCCCCCEEEEeCchhhhccCccceeEe
Confidence 43 35678999999997775 555544
No 34
>TIGR03390 ascorbOXfungal L-ascorbate oxidase, fungal type. This model describes a family of fungal ascorbate oxidases, within a larger family of multicopper oxidases that also includes plant ascorbate oxidases (TIGR03388), plant laccases and laccase-like proteins (TIGR03389), and related proteins. The member from Acremonium sp. HI-25 is characterized.
Probab=98.96 E-value=2.5e-09 Score=89.71 Aligned_cols=77 Identities=13% Similarity=0.070 Sum_probs=56.2
Q ss_pred eEEEecCCEEEEEEEcCC-------CCCceEEEEeeeeeecCCCCCCCcc---------------cceeee---------
Q psy16567 39 SIQVCKGDTIIVDVKNHM-------IDREVTLHWHGVYQKVTPWMDGVPM---------------VTQCPI--------- 87 (127)
Q Consensus 39 ~i~v~~Gd~v~v~~~N~~-------~~~~~siH~HG~~~~~~~~~DG~~~---------------~~~~~i--------- 87 (127)
++.++.|+.|+|.|.|.. ....|+||+||+.+-.....+|... .....+
T Consensus 413 ~~~~~~~~~V~ivi~n~~~~~~~~~~~~~HP~HlHGh~F~vlg~G~G~~~~~~~~~~~nl~nP~rRDTv~vp~~~~~~~~ 492 (538)
T TIGR03390 413 AFPAKVGEVLEIVWQNTGSYTGPNGGVDTHPFHAHGRHFYDIGGGDGEYNATANEAKLENYTPVLRDTTMLYRYAVKVVP 492 (538)
T ss_pred EEEcCCCCEEEEEEECCcccccCCCCCCCCCeeecCCcEEEEcccccccCCccChhhhccCCCCeecceeeccccccccc
Confidence 467788999999999974 1268999999977654333333210 011112
Q ss_pred -CCCCEEEEEEeCCCceeeEEccCCCCCc
Q psy16567 88 -PSSTTFRYKFPAMPSGTFFYHSHVDRRP 115 (127)
Q Consensus 88 -~PG~~~~y~~~~~~~Gt~~yH~H~~~~~ 115 (127)
.|+.....+|.+++||.|++|||+..|.
T Consensus 493 ~~~~~~~~ir~~~dNPG~W~~HCHi~~H~ 521 (538)
T TIGR03390 493 GAPAGWRAWRIRVTNPGVWMMHCHILQHM 521 (538)
T ss_pred cCCCceEEEEEEcCCCeeEEEeccchhhh
Confidence 3778889999999999999999998887
No 35
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.93 E-value=1.6e-08 Score=85.65 Aligned_cols=97 Identities=22% Similarity=0.183 Sum_probs=71.1
Q ss_pred ceEeecCCceE--EEEEECCCCCCCeEEEecCCEEEEEEEcCCCCCceEEEEeeeeeecCCCCCCCcccceeeeCCCCEE
Q psy16567 16 KGCVTADGFER--AILSINRQLPGPSIQVCKGDTIIVDVKNHMIDREVTLHWHGVYQKVTPWMDGVPMVTQCPIPSSTTF 93 (127)
Q Consensus 16 ~~~v~~~G~~~--~~~~~ng~~pgP~i~v~~Gd~v~v~~~N~~~~~~~siH~HG~~~~~~~~~DG~~~~~~~~i~PG~~~ 93 (127)
.+.|..+|.+. ++.+..-.+-.+.|+|++||+|+++++|.......+ ||+..+.. +. ...+.||++.
T Consensus 531 ~~~v~R~G~kv~Vym~a~a~~f~p~~i~Vk~GDeVt~~lTN~d~~~DVi---HGF~Ip~~----nI----~~dv~PG~t~ 599 (635)
T PRK02888 531 DSKVIRDGNKVRVYMTSQAPAFGLREFTVKQGDEVTVIVTNLDKVEDLT---HGFAIPNY----GV----NMEVAPQATA 599 (635)
T ss_pred ccceEEeCCEEEEEEEEEecccCCceEEecCCCEEEEEEEeCCcccccc---cceeeccc----Cc----cEEEcCCceE
Confidence 56678888554 555666666667799999999999999964322333 77765431 11 1247899999
Q ss_pred EEEEeCCCceeeEEccCC----C-CCceeeEEEEc
Q psy16567 94 RYKFPAMPSGTFFYHSHV----D-RRPYCPEIEEK 123 (127)
Q Consensus 94 ~y~~~~~~~Gt~~yH~H~----~-~~~~g~liV~d 123 (127)
+..|++++||+|||+|.. . ..|.|.++|++
T Consensus 600 svtF~adkPGvy~~~CtefCGa~H~~M~G~~iVep 634 (635)
T PRK02888 600 SVTFTADKPGVYWYYCTWFCHALHMEMRGRMLVEP 634 (635)
T ss_pred EEEEEcCCCEEEEEECCcccccCcccceEEEEEEe
Confidence 999999999999999964 2 23499999975
No 36
>PF13473 Cupredoxin_1: Cupredoxin-like domain; PDB: 1IBZ_D 1IC0_E 1IBY_D.
Probab=98.91 E-value=5.1e-09 Score=69.84 Aligned_cols=78 Identities=13% Similarity=0.157 Sum_probs=47.0
Q ss_pred EECCCCCCCeEEEecCCEEEEEEEcCCCCCceEEEEeeeeeecCCCCCCCcccceeeeCCCCEEEEEEeCCCceeeEEcc
Q psy16567 30 SINRQLPGPSIQVCKGDTIIVDVKNHMIDREVTLHWHGVYQKVTPWMDGVPMVTQCPIPSSTTFRYKFPAMPSGTFFYHS 109 (127)
Q Consensus 30 ~~ng~~pgP~i~v~~Gd~v~v~~~N~~~~~~~siH~HG~~~~~~~~~DG~~~~~~~~i~PG~~~~y~~~~~~~Gt~~yH~ 109 (127)
.-|+++-...|+++.|++|+|++.|... ..|.+..-++. . ...+.||++.++.|.++++|+|-|+|
T Consensus 27 ~~~~~f~P~~i~v~~G~~v~l~~~N~~~-~~h~~~i~~~~------------~-~~~l~~g~~~~~~f~~~~~G~y~~~C 92 (104)
T PF13473_consen 27 VTDFGFSPSTITVKAGQPVTLTFTNNDS-RPHEFVIPDLG------------I-SKVLPPGETATVTFTPLKPGEYEFYC 92 (104)
T ss_dssp ---EEEES-EEEEETTCEEEEEEEE-SS-S-EEEEEGGGT------------E-EEEE-TT-EEEEEEEE-S-EEEEEB-
T ss_pred ccCCeEecCEEEEcCCCeEEEEEEECCC-CcEEEEECCCc------------e-EEEECCCCEEEEEEcCCCCEEEEEEc
Confidence 3355555578999999999999999987 55444333311 1 12589999999999999999999999
Q ss_pred CCCCCceeeEEE
Q psy16567 110 HVDRRPYCPEIE 121 (127)
Q Consensus 110 H~~~~~~g~liV 121 (127)
-....+-|.|+|
T Consensus 93 ~~~~~m~G~liV 104 (104)
T PF13473_consen 93 TMHPNMKGTLIV 104 (104)
T ss_dssp SSS-TTB-----
T ss_pred CCCCcceecccC
Confidence 887766777776
No 37
>PLN00044 multi-copper oxidase-related protein; Provisional
Probab=98.88 E-value=1e-08 Score=86.96 Aligned_cols=85 Identities=8% Similarity=-0.146 Sum_probs=60.7
Q ss_pred EEEecCCEEEEEEEcCCCCCceEEEEeeeeeecCCCCCCCc--------------ccceeeeCCCCEEEEEEeCCCceee
Q psy16567 40 IQVCKGDTIIVDVKNHMIDREVTLHWHGVYQKVTPWMDGVP--------------MVTQCPIPSSTTFRYKFPAMPSGTF 105 (127)
Q Consensus 40 i~v~~Gd~v~v~~~N~~~~~~~siH~HG~~~~~~~~~DG~~--------------~~~~~~i~PG~~~~y~~~~~~~Gt~ 105 (127)
++++.++.|+|.|.|... .+|+||+||+.+-...+..|.. ......+.+|.-...+|.+|+||.|
T Consensus 435 ~~~~~n~~VeiV~qn~~~-~~HP~HLHGh~F~Vvg~G~G~~~~~~~~~~Nl~nPp~RdTv~vp~~gW~aIRF~aDNPG~W 513 (596)
T PLN00044 435 INGTYKGFMEIIFQNNAT-NVQSYHLDGYAFFVVGMDYGLWTDNSRGTYNKWDGVARSTIQVFPGAWTAILVFLDNAGIW 513 (596)
T ss_pred EEcCCCCEEEEEEeCCCC-CCCCeeEcCccEEEEeecCCCCCCCcccccccCCCCccceEEeCCCCeEEEEEecCCCEEe
Confidence 567789999999999765 6899999998765332222221 1122346789999999999999999
Q ss_pred EEccCCCCCc----eeeEEEEcCC
Q psy16567 106 FYHSHVDRRP----YCPEIEEKKK 125 (127)
Q Consensus 106 ~yH~H~~~~~----~g~liV~d~~ 125 (127)
++|||+..+. .-.++|+++.
T Consensus 514 ~lHCH~~~h~~~Gm~~~~~v~~~~ 537 (596)
T PLN00044 514 NLRVENLDAWYLGQEVYINVVNPE 537 (596)
T ss_pred hhhccCchhhcccCcEEEEEecCC
Confidence 9999954433 3345565544
No 38
>PRK10883 FtsI repressor; Provisional
Probab=98.81 E-value=2e-08 Score=83.08 Aligned_cols=93 Identities=12% Similarity=0.057 Sum_probs=63.4
Q ss_pred EEEECCCCCCC---eEEEecCCEEEEEEEcCCCCCceEEEEeeeeeecCCCCCCCccc---c--eeeeCCCCEEEEEEeC
Q psy16567 28 ILSINRQLPGP---SIQVCKGDTIIVDVKNHMIDREVTLHWHGVYQKVTPWMDGVPMV---T--QCPIPSSTTFRYKFPA 99 (127)
Q Consensus 28 ~~~~ng~~pgP---~i~v~~Gd~v~v~~~N~~~~~~~siH~HG~~~~~~~~~DG~~~~---~--~~~i~PG~~~~y~~~~ 99 (127)
.|++||+...+ .++++.|++.+++|.|. +.|+||+||..+.... .+|.+.. . ...|..+++.+..+..
T Consensus 362 ~~~INg~~~~~~~~~~~~~~g~~e~W~~~n~---~~HP~HlHg~~FqVl~-~~G~~~~~~~~gwkDTV~v~~~v~i~~~f 437 (471)
T PRK10883 362 LPGINGALWDMNRIDVTAQQGTWERWTVRAD---MPQAFHIEGVMFLIRN-VNGAMPFPEDRGWKDTVWVDGQVELLVYF 437 (471)
T ss_pred cCccCCcccCCCcceeecCCCCEEEEEEECC---CCcCEeECCccEEEEE-ecCCCCCccccCcCcEEEcCCeEEEEEEe
Confidence 36899985332 36899999999999996 4699999998876543 4554210 0 1122223457777777
Q ss_pred CCce----eeEEccCCCCCc----eeeEEEEcC
Q psy16567 100 MPSG----TFFYHSHVDRRP----YCPEIEEKK 124 (127)
Q Consensus 100 ~~~G----t~~yH~H~~~~~----~g~liV~d~ 124 (127)
++++ .|+||||+..|. .|.+.|.+|
T Consensus 438 ~~~~~~~~~~m~HCHiLeHeD~GMM~~~~V~~~ 470 (471)
T PRK10883 438 GQPSWAHFPFLFYSQTLEMADRGSIGQLLVNPA 470 (471)
T ss_pred cCCCCCCCcEEeecccccccccCCccCeEEecC
Confidence 7665 799999997765 777777543
No 39
>TIGR02376 Cu_nitrite_red nitrite reductase, copper-containing. This family consists of copper-type nitrite reductase. It reduces nitrite to nitric oxide, the first step in denitrification.
Probab=98.81 E-value=1.5e-08 Score=79.83 Aligned_cols=88 Identities=16% Similarity=0.138 Sum_probs=69.7
Q ss_pred EEEEEECCCCC--CCeEEEecCCEEEEEEEcCCCCCceEEEEeeeeeecCCCCCCCcc------cceeeeCCCCEEEEEE
Q psy16567 26 RAILSINRQLP--GPSIQVCKGDTIIVDVKNHMIDREVTLHWHGVYQKVTPWMDGVPM------VTQCPIPSSTTFRYKF 97 (127)
Q Consensus 26 ~~~~~~ng~~p--gP~i~v~~Gd~v~v~~~N~~~~~~~siH~HG~~~~~~~~~DG~~~------~~~~~i~PG~~~~y~~ 97 (127)
...+++||+.. .|.+.++.|+++|++|.|........+|++|.+.... +.||.+. .....|.||+++.+.+
T Consensus 188 ~~~~~iNG~~~~~~~~~~v~~G~~~RlRiiNa~~~~~~~~~~~g~~~~~v-~~DG~~~~~~~~~~~~~~i~PG~R~dv~v 266 (311)
T TIGR02376 188 PTHVVFNGAVGALTGDNALTAGVGERVLFVHSQPNRDSRPHLIGGHGDYV-WVTGKFANPPNRDVETWFIPGGSAAAALY 266 (311)
T ss_pred CCEEEECCccCCCCCCcccccCCcEEEEEEcCCCCCCCCCeEecCCceEE-EECCcccCCCCCCcceEEECCCceEEEEE
Confidence 36789999842 3678999999999999998775678899999776543 2577632 2334689999999999
Q ss_pred eCCCceeeEEccCCCCC
Q psy16567 98 PAMPSGTFFYHSHVDRR 114 (127)
Q Consensus 98 ~~~~~Gt~~yH~H~~~~ 114 (127)
+++++|.|+.+||...+
T Consensus 267 ~~~~pG~y~~~~~~~~~ 283 (311)
T TIGR02376 267 TFEQPGVYAYVDHNLIE 283 (311)
T ss_pred EeCCCeEEEEECcHHHH
Confidence 99999999999997543
No 40
>TIGR02656 cyanin_plasto plastocyanin. Members of this family are plastocyanin, a blue copper protein related to pseudoazurin, halocyanin, amicyanin, etc. This protein, located in the thylakoid luman, performs electron transport to photosystem I in Cyanobacteria and chloroplasts.
Probab=98.78 E-value=5.1e-08 Score=64.65 Aligned_cols=82 Identities=12% Similarity=0.067 Sum_probs=52.2
Q ss_pred CCCeEEEecCCEEEEEEEcCCCCCceEEEEeeeeeecCCC-CCCCcccceeeeCCCCEEEEEEeCCCceeeEEccCCCC-
Q psy16567 36 PGPSIQVCKGDTIIVDVKNHMIDREVTLHWHGVYQKVTPW-MDGVPMVTQCPIPSSTTFRYKFPAMPSGTFFYHSHVDR- 113 (127)
Q Consensus 36 pgP~i~v~~Gd~v~v~~~N~~~~~~~siH~HG~~~~~~~~-~DG~~~~~~~~i~PG~~~~y~~~~~~~Gt~~yH~H~~~- 113 (127)
-...|++++||+|+ |+|... .+|++.+.......... ..+........+.||+++++.|.. +|+|.|+|....
T Consensus 15 ~P~~i~v~~G~~V~--~~N~~~-~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~pG~t~~~tF~~--~G~y~y~C~~H~~ 89 (99)
T TIGR02656 15 EPAKISIAAGDTVE--WVNNKG-GPHNVVFDEDAVPAGVKELAKSLSHKDLLNSPGESYEVTFST--PGTYTFYCEPHRG 89 (99)
T ss_pred eCCEEEECCCCEEE--EEECCC-CCceEEECCCCCccchhhhcccccccccccCCCCEEEEEeCC--CEEEEEEcCCccc
Confidence 34679999999875 557765 67877765432211000 000000112246899999998885 999999996333
Q ss_pred -CceeeEEEE
Q psy16567 114 -RPYCPEIEE 122 (127)
Q Consensus 114 -~~~g~liV~ 122 (127)
.+.|.|+|+
T Consensus 90 aGM~G~I~V~ 99 (99)
T TIGR02656 90 AGMVGKITVE 99 (99)
T ss_pred cCCEEEEEEC
Confidence 459999884
No 41
>TIGR02657 amicyanin amicyanin. Members of this family are amicyanin, a type I blue copper protein that accepts electrons from the tryptophan tryptophylquinone (TTQ) cofactor of the methylamine dehydrogenase light chain and then transfers them to the heme group of cytochrome c-551i. Amicyanin, methylamine dehydrogenase, and cytochrome c-551i are periplasmic and form a complex. This system has been studied primarily in Paracoccus denitrificans and Methylobacterium extorquens. Related type I blue copper proteins include plastocyanin, pseudoazurin, halocyanin, etc.
Probab=98.75 E-value=9e-08 Score=61.52 Aligned_cols=75 Identities=19% Similarity=0.228 Sum_probs=51.9
Q ss_pred CCCeEEEecCCEEEEEEEcCCCCCceEEEEeeeeeecCCCCCCCcccceeeeCCCCEEEEEEeCCCceeeEEccCCCCCc
Q psy16567 36 PGPSIQVCKGDTIIVDVKNHMIDREVTLHWHGVYQKVTPWMDGVPMVTQCPIPSSTTFRYKFPAMPSGTFFYHSHVDRRP 115 (127)
Q Consensus 36 pgP~i~v~~Gd~v~v~~~N~~~~~~~siH~HG~~~~~~~~~DG~~~~~~~~i~PG~~~~y~~~~~~~Gt~~yH~H~~~~~ 115 (127)
-.+.|+++.||+|+ +.|... .+|+++...... +........+.||+++++.| +++|+|-|||-....|
T Consensus 9 ~P~~i~v~~GdtVt--~~N~d~-~~Hnv~~~~g~~-------~~~~~~~~~~~~g~~~~~tf--~~~G~y~y~C~~Hp~M 76 (83)
T TIGR02657 9 ETPELHVKVGDTVT--WINREA-MPHNVHFVAGVL-------GEAALKGPMMKKEQAYSLTF--TEAGTYDYHCTPHPFM 76 (83)
T ss_pred cCCEEEECCCCEEE--EEECCC-CCccEEecCCCC-------ccccccccccCCCCEEEEEC--CCCEEEEEEcCCCCCC
Confidence 35779999999986 578766 678887654221 10001111256777776655 6899999999888888
Q ss_pred eeeEEEE
Q psy16567 116 YCPEIEE 122 (127)
Q Consensus 116 ~g~liV~ 122 (127)
-|.|+|+
T Consensus 77 ~G~v~V~ 83 (83)
T TIGR02657 77 RGKVVVE 83 (83)
T ss_pred eEEEEEC
Confidence 9999985
No 42
>PF00127 Copper-bind: Copper binding proteins, plastocyanin/azurin family; InterPro: IPR000923 Blue (type 1) copper proteins are small proteins which bind a single copper atom and which are characterised by an intense electronic absorption band near 600 nm [, ]. The most well known members of this class of proteins are the plant chloroplastic plastocyanins, which exchange electrons with cytochrome c6, and the distantly related bacterial azurins, which exchange electrons with cytochrome c551. This family of proteins also includes amicyanin from bacteria such as Methylobacterium extorquens or Paracoccus versutus (Thiobacillus versutus) that can grow on methylamine; auracyanins A and B from Chloroflexus aurantiacus []; blue copper protein from Alcaligenes faecalis; cupredoxin (CPC) from Cucumis sativus (Cucumber) peelings []; cusacyanin (basic blue protein; plantacyanin, CBP) from cucumber; halocyanin from Natronomonas pharaonis (Natronobacterium pharaonis) [], a membrane associated copper-binding protein; pseudoazurin from Pseudomonas; rusticyanin from Thiobacillus ferrooxidans []; stellacyanin from Rhus vernicifera (Japanese lacquer tree); umecyanin from the roots of Armoracia rusticana (Horseradish); and allergen Ra3 from ragweed. This pollen protein is evolutionary related to the above proteins, but seems to have lost the ability to bind copper. Although there is an appreciable amount of divergence in the sequences of all these proteins, the copper ligand sites are conserved.; GO: 0005507 copper ion binding, 0009055 electron carrier activity; PDB: 1UAT_A 1CUO_A 1PLC_A 4PCY_A 3PCY_A 1PND_A 1PNC_A 1JXG_A 6PCY_A 1TKW_A ....
Probab=98.67 E-value=1.2e-07 Score=62.78 Aligned_cols=76 Identities=20% Similarity=0.202 Sum_probs=50.7
Q ss_pred CCeEEEecCCEEEEEEEcCCCCCceEEEEeeeeeecCCCCCCC------cccceeeeCCCCEEEEEEeCCCceeeEEccC
Q psy16567 37 GPSIQVCKGDTIIVDVKNHMIDREVTLHWHGVYQKVTPWMDGV------PMVTQCPIPSSTTFRYKFPAMPSGTFFYHSH 110 (127)
Q Consensus 37 gP~i~v~~Gd~v~v~~~N~~~~~~~siH~HG~~~~~~~~~DG~------~~~~~~~i~PG~~~~y~~~~~~~Gt~~yH~H 110 (127)
.+.|.++.||+|++ .|... .+|++.+=- ..+..+. .......+.||+++++.|+ ++|+|.|+|-
T Consensus 16 P~~i~V~~G~tV~~--~n~~~-~~Hnv~~~~-----~~~~~~~~~~~~~~~~~~~~~~~G~~~~~tF~--~~G~y~y~C~ 85 (99)
T PF00127_consen 16 PSEITVKAGDTVTF--VNNDS-MPHNVVFVA-----DGMPAGADSDYVPPGDSSPLLAPGETYSVTFT--KPGTYEYYCT 85 (99)
T ss_dssp SSEEEEETTEEEEE--EEESS-SSBEEEEET-----TSSHTTGGHCHHSTTCEEEEBSTTEEEEEEEE--SSEEEEEEET
T ss_pred CCEEEECCCCEEEE--EECCC-CCceEEEec-----ccccccccccccCccccceecCCCCEEEEEeC--CCeEEEEEcC
Confidence 47799999998764 55444 567765522 1111111 0012235789999999998 8999999995
Q ss_pred --CCCCceeeEEEE
Q psy16567 111 --VDRRPYCPEIEE 122 (127)
Q Consensus 111 --~~~~~~g~liV~ 122 (127)
....+.|.|+|+
T Consensus 86 PH~~~GM~G~i~V~ 99 (99)
T PF00127_consen 86 PHYEAGMVGTIIVE 99 (99)
T ss_dssp TTGGTTSEEEEEEE
T ss_pred CCcccCCEEEEEEC
Confidence 444569999996
No 43
>PF00394 Cu-oxidase: Multicopper oxidase; InterPro: IPR001117 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 1 (blue) domains. These domains are also present in proteins that have lost the ability to bind copper.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1RZP_A 2AVF_D 1NIA_A 1KCB_A 2NRD_A 1NIB_A 2BW4_A 1RZQ_C 2BWD_A 2BWI_A ....
Probab=98.54 E-value=4.6e-07 Score=64.62 Aligned_cols=85 Identities=19% Similarity=0.257 Sum_probs=65.7
Q ss_pred eEEEEEECCC------------CCCCeEEEecCCEEEEEEEcCCCCCceEEEEeeeeeecCCCCCCCcc----cceeeeC
Q psy16567 25 ERAILSINRQ------------LPGPSIQVCKGDTIIVDVKNHMIDREVTLHWHGVYQKVTPWMDGVPM----VTQCPIP 88 (127)
Q Consensus 25 ~~~~~~~ng~------------~pgP~i~v~~Gd~v~v~~~N~~~~~~~siH~HG~~~~~~~~~DG~~~----~~~~~i~ 88 (127)
.....++||+ -..|+|.+++|+++++||.|......+.+++.|+...... .||.+. +....|.
T Consensus 35 ~~d~~liNG~~~~~~~~~~~~~~~~~~~~v~~g~~~rlRliNa~~~~~~~~~i~gh~~~Via-~DG~~v~p~~~~~l~l~ 113 (159)
T PF00394_consen 35 IPDSILINGKGRFDCSSADYTGGEPPVIKVKPGERYRLRLINAGASTSFNFSIDGHPMTVIA-ADGVPVEPYKVDTLVLA 113 (159)
T ss_dssp SCSEEEETTBTCBTTCTTGSTTSTSGEEEEETTTEEEEEEEEESSS-BEEEEETTBCEEEEE-ETTEEEEEEEESBEEE-
T ss_pred CCcEEEECCccccccccccccccccceEEEcCCcEEEEEEEeccCCeeEEEEeeccceeEee-eccccccccccceEEee
Confidence 3456788883 2248899999999999999998855788999998766543 788754 2233589
Q ss_pred CCCEEEEEEeCCC-ceeeEEccC
Q psy16567 89 SSTTFRYKFPAMP-SGTFFYHSH 110 (127)
Q Consensus 89 PG~~~~y~~~~~~-~Gt~~yH~H 110 (127)
||+++++-+++++ +|.||..+.
T Consensus 114 ~G~R~dvlv~~~~~~g~y~i~~~ 136 (159)
T PF00394_consen 114 PGQRYDVLVTADQPPGNYWIRAS 136 (159)
T ss_dssp TTEEEEEEEEECSCSSEEEEEEE
T ss_pred CCeEEEEEEEeCCCCCeEEEEEe
Confidence 9999999999987 899999994
No 44
>KOG1263|consensus
Probab=98.50 E-value=5.2e-07 Score=76.16 Aligned_cols=78 Identities=15% Similarity=0.175 Sum_probs=58.1
Q ss_pred CeEEEecCCEEEEEEEcCCCC--CceEEEEeeeeeecCCCCCCCcc----------------cceeeeCCCCEEEEEEeC
Q psy16567 38 PSIQVCKGDTIIVDVKNHMID--REVTLHWHGVYQKVTPWMDGVPM----------------VTQCPIPSSTTFRYKFPA 99 (127)
Q Consensus 38 P~i~v~~Gd~v~v~~~N~~~~--~~~siH~HG~~~~~~~~~DG~~~----------------~~~~~i~PG~~~~y~~~~ 99 (127)
-+++++-++.|+|.|.|...- ..|++|+||..+.....-+|... .....|.||.-...+|.+
T Consensus 430 ~v~~~~~~~~veIVlqN~~~~~~~~hp~HLHG~~F~Vvg~g~G~~~~~~d~~~~yNl~dp~~R~Tv~V~pggw~aIrf~a 509 (563)
T KOG1263|consen 430 SVMKLEFNSFVEIVLQNTSTGTQENHPNHLHGYNFYVVGYGFGNWDPAKDPRKKYNLVDPVSRDTVQVPPGGWTAIRFVA 509 (563)
T ss_pred eEEEeecCCEEEEEEeCCccccCCCCccceeceEEEEEEecccccCcCcChhhhcccCCCcccceEEeCCCCEEEEEEEc
Confidence 347999999999999998752 35677999987653221122111 122347899999999999
Q ss_pred CCceeeEEccCCCCCc
Q psy16567 100 MPSGTFFYHSHVDRRP 115 (127)
Q Consensus 100 ~~~Gt~~yH~H~~~~~ 115 (127)
++||.|.+|||+..|.
T Consensus 510 dNPG~W~~HCHie~H~ 525 (563)
T KOG1263|consen 510 DNPGVWLMHCHIEDHL 525 (563)
T ss_pred CCCcEEEEEEecHHHH
Confidence 9999999999997775
No 45
>PRK02710 plastocyanin; Provisional
Probab=98.45 E-value=1.8e-06 Score=59.16 Aligned_cols=74 Identities=15% Similarity=0.225 Sum_probs=51.6
Q ss_pred CCCCeEEEecCCEEEEEEEcCCCCCceEEEEeeeeeecCCCCCCCcccceeeeCCCCEEEEEEeCCCceeeEEccCCCC-
Q psy16567 35 LPGPSIQVCKGDTIIVDVKNHMIDREVTLHWHGVYQKVTPWMDGVPMVTQCPIPSSTTFRYKFPAMPSGTFFYHSHVDR- 113 (127)
Q Consensus 35 ~pgP~i~v~~Gd~v~v~~~N~~~~~~~siH~HG~~~~~~~~~DG~~~~~~~~i~PG~~~~y~~~~~~~Gt~~yH~H~~~- 113 (127)
|-.+.|.++.||+|+ |+|... .+|++.+.+.. ... .....+.||+++++.|+. +|+|-|+|-.+.
T Consensus 44 F~P~~i~v~~Gd~V~--~~N~~~-~~H~v~~~~~~--------~~~-~~~~~~~pg~t~~~tF~~--~G~y~y~C~~H~~ 109 (119)
T PRK02710 44 FEPSTLTIKAGDTVK--WVNNKL-APHNAVFDGAK--------ELS-HKDLAFAPGESWEETFSE--AGTYTYYCEPHRG 109 (119)
T ss_pred EeCCEEEEcCCCEEE--EEECCC-CCceEEecCCc--------ccc-ccccccCCCCEEEEEecC--CEEEEEEcCCCcc
Confidence 335779999999865 567765 67777654321 100 111237899999988886 899999996443
Q ss_pred -CceeeEEEE
Q psy16567 114 -RPYCPEIEE 122 (127)
Q Consensus 114 -~~~g~liV~ 122 (127)
.+.|.|+|+
T Consensus 110 ~gM~G~I~V~ 119 (119)
T PRK02710 110 AGMVGKITVE 119 (119)
T ss_pred CCcEEEEEEC
Confidence 459999984
No 46
>TIGR02375 pseudoazurin pseudoazurin. Pseudoazurin, also called cupredoxin, is a small, blue periplasmic protein with a single bound copper atom. Pseudoazurin is related plastocyanins. Several examples of pseudoazurin are encoded by a neighboring gene for, or have been shown to transfer electrons to, copper-containing nitrite reductases (TIGR02376) of the same species.
Probab=98.33 E-value=5.5e-06 Score=56.74 Aligned_cols=74 Identities=9% Similarity=0.068 Sum_probs=46.4
Q ss_pred CCeEEEecCCEEEEEEEcCCCCCceEEEE-eeeeeecCCCCCCCcccceeeeCCCCEEEEEEeCCCceeeEEccCCCCC-
Q psy16567 37 GPSIQVCKGDTIIVDVKNHMIDREVTLHW-HGVYQKVTPWMDGVPMVTQCPIPSSTTFRYKFPAMPSGTFFYHSHVDRR- 114 (127)
Q Consensus 37 gP~i~v~~Gd~v~v~~~N~~~~~~~siH~-HG~~~~~~~~~DG~~~~~~~~i~PG~~~~y~~~~~~~Gt~~yH~H~~~~- 114 (127)
.+.|.++.||+|++...|. .|+... .+. ..+|.... ...+|++++ |+.+++|+|-|+|-.+..
T Consensus 14 P~~v~V~~GdTV~f~n~d~----~Hnv~~~~~~------~p~g~~~~---~s~~g~~~~--~tF~~~G~Y~Y~C~pH~~~ 78 (116)
T TIGR02375 14 PAYIRAAPGDTVTFVPTDK----GHNVETIKGM------IPEGAEAF---KSKINEEYT--VTVTEEGVYGVKCTPHYGM 78 (116)
T ss_pred CCEEEECCCCEEEEEECCC----CeeEEEccCC------CcCCcccc---cCCCCCEEE--EEeCCCEEEEEEcCCCccC
Confidence 4679999999999766553 344332 111 12332211 123455555 555689999999965444
Q ss_pred -ceeeEEEEcCC
Q psy16567 115 -PYCPEIEEKKK 125 (127)
Q Consensus 115 -~~g~liV~d~~ 125 (127)
+.|.|+|-+|.
T Consensus 79 GM~G~V~Vg~~~ 90 (116)
T TIGR02375 79 GMVALIQVGDPP 90 (116)
T ss_pred CCEEEEEECCCC
Confidence 69999998863
No 47
>COG3794 PetE Plastocyanin [Energy production and conversion]
Probab=98.16 E-value=1.6e-05 Score=55.38 Aligned_cols=74 Identities=15% Similarity=0.101 Sum_probs=47.8
Q ss_pred CCeEEEecCCEEEEEEEcCCCCCceEEEEeeeeeecCCCCCCCcccceeeeCCCCEEEEEEeCCCceeeEEccCC--CCC
Q psy16567 37 GPSIQVCKGDTIIVDVKNHMIDREVTLHWHGVYQKVTPWMDGVPMVTQCPIPSSTTFRYKFPAMPSGTFFYHSHV--DRR 114 (127)
Q Consensus 37 gP~i~v~~Gd~v~v~~~N~~~~~~~siH~HG~~~~~~~~~DG~~~~~~~~i~PG~~~~y~~~~~~~Gt~~yH~H~--~~~ 114 (127)
...++++.||+|+ +.|... ..|+++.-+... .+|... ....+|+++++.|. .+|+|-|.|-. ...
T Consensus 53 PA~v~v~pGDTVt--w~~~d~-~~Hnv~~~~~~~-----~~g~~~---~~~~~~~s~~~Tfe--~~G~Y~Y~C~PH~~~g 119 (128)
T COG3794 53 PAEVTVKPGDTVT--WVNTDS-VGHNVTAVGGMD-----PEGSGT---LKAGINESFTHTFE--TPGEYTYYCTPHPGMG 119 (128)
T ss_pred CcEEEECCCCEEE--EEECCC-CCceEEEeCCCC-----cccccc---cccCCCcceEEEec--ccceEEEEeccCCCCC
Confidence 3569999999987 567665 577765544320 122211 12344566655555 59999999955 447
Q ss_pred ceeeEEEEc
Q psy16567 115 PYCPEIEEK 123 (127)
Q Consensus 115 ~~g~liV~d 123 (127)
+.|.|+|++
T Consensus 120 M~G~IvV~~ 128 (128)
T COG3794 120 MKGKIVVGE 128 (128)
T ss_pred cEEEEEeCC
Confidence 799999975
No 48
>TIGR03102 halo_cynanin halocyanin domain. Halocyanins are blue (type I) copper redox proteins found in halophilic archaea such as Natronobacterium pharaonis. This model represents a domain duplicated in some halocyanins, while appearing once in others. This domain includes the characteristic copper ligand residues. This family does not include plastocyanins, and does not include certain divergent paralogs of halocyanin.
Probab=98.13 E-value=3.1e-05 Score=52.94 Aligned_cols=73 Identities=16% Similarity=0.132 Sum_probs=47.1
Q ss_pred CCeEEEecCCEEEEEEEcCCCCCceEEEEeeeeeecCCCCCCCcccceeeeCCCCEEEEEEeCCCceeeEEccCCCC--C
Q psy16567 37 GPSIQVCKGDTIIVDVKNHMIDREVTLHWHGVYQKVTPWMDGVPMVTQCPIPSSTTFRYKFPAMPSGTFFYHSHVDR--R 114 (127)
Q Consensus 37 gP~i~v~~Gd~v~v~~~N~~~~~~~siH~HG~~~~~~~~~DG~~~~~~~~i~PG~~~~y~~~~~~~Gt~~yH~H~~~--~ 114 (127)
.+.|+++.||+|++ +|+.+..+|++..- ....+ | .......+|+++++.| +++|+|-|+|-.+. .
T Consensus 41 P~~ltV~~GdTVtw--~~~~d~~~HnV~s~----~~~~f-~----s~~~~~~~G~t~s~Tf--~~~G~Y~Y~C~pH~~~g 107 (115)
T TIGR03102 41 PPAIRVDPGTTVVW--EWTGEGGGHNVVSD----GDGDL-D----ESERVSEEGTTYEHTF--EEPGIYLYVCVPHEALG 107 (115)
T ss_pred CCEEEECCCCEEEE--EECCCCCCEEEEEC----CCCCc-c----ccccccCCCCEEEEEe--cCCcEEEEEccCCCCCC
Confidence 46799999999985 54332145665421 00111 1 1111257899988888 57999999996655 5
Q ss_pred ceeeEEEE
Q psy16567 115 PYCPEIEE 122 (127)
Q Consensus 115 ~~g~liV~ 122 (127)
|.|.|+|+
T Consensus 108 M~G~I~V~ 115 (115)
T TIGR03102 108 MKGAVVVE 115 (115)
T ss_pred CEEEEEEC
Confidence 79999984
No 49
>PF06525 SoxE: Sulfocyanin (SoxE); InterPro: IPR010532 Members of this family are blue-copper redox proteins designated sulfocyanin, from the archaeal genera Sulfolobus, Ferroplasma, and Picrophilus. The most closely related proteins characterised as functionally different are the rusticyanins.
Probab=97.99 E-value=0.00016 Score=53.55 Aligned_cols=97 Identities=15% Similarity=0.110 Sum_probs=67.5
Q ss_pred EEEEECCCCCC-CeEEEecCCEEEEEEEcCCCCCceEEEEeeeee--e--cCCCCCCCcc---------cceeeeCCCCE
Q psy16567 27 AILSINRQLPG-PSIQVCKGDTIIVDVKNHMIDREVTLHWHGVYQ--K--VTPWMDGVPM---------VTQCPIPSSTT 92 (127)
Q Consensus 27 ~~~~~ng~~pg-P~i~v~~Gd~v~v~~~N~~~~~~~siH~HG~~~--~--~~~~~DG~~~---------~~~~~i~PG~~ 92 (127)
..+.|||..-| ++|.+..|-+|.|+|+|... ++|++-+-=-.. + ..-+.||.-. .....|.+|++
T Consensus 74 ~~~nfnGts~G~m~i~VPAGw~V~i~f~N~~~-l~Hnl~iv~~~~~~p~~~~i~~DgkIl~~~G~s~~~~~~~GI~~G~s 152 (196)
T PF06525_consen 74 NPFNFNGTSNGQMTIYVPAGWNVQITFTNQES-LPHNLVIVQNDTPTPNNPPISSDGKILLYVGASPGNYTSNGISSGQS 152 (196)
T ss_pred CceeeecccCCcEEEEEcCCCEEEEEEEcCCC-CCeeEEEEeCCCCCCCccccCCCCceeeeccCCCCccccCCccCCce
Confidence 36788888766 77999999999999999877 887765431110 0 1113455211 01124678999
Q ss_pred EEEEEeCCCceeeEEccCCCCCc----eeeEEEEcC
Q psy16567 93 FRYKFPAMPSGTFFYHSHVDRRP----YCPEIEEKK 124 (127)
Q Consensus 93 ~~y~~~~~~~Gt~~yH~H~~~~~----~g~liV~d~ 124 (127)
..-.|..-++|.||+=|-+-+|. ++-|+|.+-
T Consensus 153 ~~~~~~~l~aG~YwlvC~ipGHA~sGMw~~LiVs~~ 188 (196)
T PF06525_consen 153 ASGVYNDLPAGYYWLVCGIPGHAESGMWGVLIVSSN 188 (196)
T ss_pred eeEEEccCCCceEEEEccCCChhhcCCEEEEEEecC
Confidence 98888777899999999776665 788888654
No 50
>TIGR03094 sulfo_cyanin sulfocyanin. Members of this family are blue-copper redox proteins designated sulfocyanin, from the archaeal genera Sulfolobus, Ferroplasma, and Picrophilus. The most closely related proteins characterized as functionally different are the rustacyanins.
Probab=97.97 E-value=0.00015 Score=53.18 Aligned_cols=97 Identities=13% Similarity=0.041 Sum_probs=66.1
Q ss_pred EEEECCCCCC-CeEEEecCCEEEEEEEcCCCCCceEEEEeeeee--e--cCCCCCCCcc----cc-----eeeeCCCCEE
Q psy16567 28 ILSINRQLPG-PSIQVCKGDTIIVDVKNHMIDREVTLHWHGVYQ--K--VTPWMDGVPM----VT-----QCPIPSSTTF 93 (127)
Q Consensus 28 ~~~~ng~~pg-P~i~v~~Gd~v~v~~~N~~~~~~~siH~HG~~~--~--~~~~~DG~~~----~~-----~~~i~PG~~~ 93 (127)
.+-|||+..| ++|.+..|-+|.|+|+|... .+|++-+-=-.. + .....||..- .. ..-+.+|++.
T Consensus 74 ~fNfnGts~G~mtIyiPaGw~V~V~f~N~e~-~pHnl~iv~n~t~~P~~~~~s~dgkil~~vG~~~s~~~~NGi~~Gqs~ 152 (195)
T TIGR03094 74 PFNFNGTSYGAMTIYLPAGWNVYVTFTNYES-LPHNLKLLPNSTQTPRGPIWAHTGKIINSTGATTSIYYGNGISSGHSR 152 (195)
T ss_pred cccccCccCCceEEEEeCCCEEEEEEEcCCC-CCccEEEecCCCCCCCccccccCceeEeecccccCcccccccccccee
Confidence 3677898776 88999999999999999987 787765511111 0 0012344211 00 0125678887
Q ss_pred EEEEeCCCceeeEEccCCCCCc----eeeEEEEcCC
Q psy16567 94 RYKFPAMPSGTFFYHSHVDRRP----YCPEIEEKKK 125 (127)
Q Consensus 94 ~y~~~~~~~Gt~~yH~H~~~~~----~g~liV~d~~ 125 (127)
.-.|+.-++|+|||-|-+-+|. ++-+||..-.
T Consensus 153 sg~~~~~~~G~YwlvCgipGHAesGMw~~lIVSs~v 188 (195)
T TIGR03094 153 SGWWNDTSAGKYWLVCGITGHAESGMWAVVIVSSNV 188 (195)
T ss_pred EEEeccCCCeeEEEEcccCChhhcCcEEEEEEecCc
Confidence 7777777999999999776664 8888886543
No 51
>PF00116 COX2: Cytochrome C oxidase subunit II, periplasmic domain This family corresponds to chains b and o.; InterPro: IPR002429 Cytochrome c oxidase (1.9.3.1 from EC) [, ] is an oligomeric enzymatic complex which is a component of the respiratory chain and is involved in the transfer of electrons from cytochrome c to oxygen. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. The number of polypeptides in the complex ranges from 3-4 (prokaryotes), up to 13(mammals). Subunit 2 (CO II) transfers the electrons from cytochrome c to the catalytic subunit 1. It contains two adjacent transmembrane regions in its N terminus and the major part of the protein is exposed to the periplasmic or to the mitochondrial intermembrane space, respectively. CO II provides the substrate-binding site and contains a copper centre called Cu(A), probably the primary acceptor in cytochrome c oxidase. An exception is the corresponding subunit of the cbb3-type oxidase which lacks the copper A redox-centre. Several bacterial CO II have a C-terminal extension that contains a covalently bound haem c.; GO: 0004129 cytochrome-c oxidase activity, 0005507 copper ion binding, 0016020 membrane; PDB: 3OMN_D 3OMA_B 3OMI_D 3OM3_B 3EHB_B 1AR1_B 1QLE_B 3HB3_B 2IWK_B 2IWF_A ....
Probab=96.97 E-value=0.0069 Score=41.50 Aligned_cols=60 Identities=12% Similarity=0.198 Sum_probs=44.7
Q ss_pred CCeEEEecCCEEEEEEEcCCCCCceEEEEeeeeeecCCCCCCCcccceeeeCCCCEEEEEEeCCCceeeEEccCC
Q psy16567 37 GPSIQVCKGDTIIVDVKNHMIDREVTLHWHGVYQKVTPWMDGVPMVTQCPIPSSTTFRYKFPAMPSGTFFYHSHV 111 (127)
Q Consensus 37 gP~i~v~~Gd~v~v~~~N~~~~~~~siH~HG~~~~~~~~~DG~~~~~~~~i~PG~~~~y~~~~~~~Gt~~yH~H~ 111 (127)
.+.|.++.|++|++.+++.. .- ||+..+. . | + +.-+-||+.....|+++++|+|.+.|.-
T Consensus 45 ~~~l~lp~g~~v~~~ltS~D--Vi-----Hsf~ip~---~-~---~-k~d~~PG~~~~~~~~~~~~G~y~~~C~e 104 (120)
T PF00116_consen 45 DNELVLPAGQPVRFHLTSED--VI-----HSFWIPE---L-G---I-KMDAIPGRTNSVTFTPDKPGTYYGQCAE 104 (120)
T ss_dssp SSEEEEETTSEEEEEEEESS--S------EEEEETT---C-T---E-EEEEBTTCEEEEEEEESSSEEEEEEE-S
T ss_pred cceecccccceEeEEEEcCC--cc-----ccccccc---c-C---c-ccccccccceeeeeeeccCCcEEEcCcc
Confidence 46799999999999999964 33 5554432 1 1 1 1236899999999999999999999964
No 52
>TIGR02695 azurin azurin. Azurin is a blue copper-binding protein in the plastocyanin/azurin family (see Pfam model pfam00127). It serves as a redox partner to enzymes such as nitrite reductase or arsenite oxidase. The most closely related copper-binding proteins to this family are auracyanins, as in Chloroflexus aurantiacus, which have similar redox activities.
Probab=96.43 E-value=0.027 Score=39.06 Aligned_cols=78 Identities=18% Similarity=0.117 Sum_probs=49.0
Q ss_pred CCeEEEec-CCEEEEEEEcCCCCCceEEEEeeeeeecCCCC-----C----C-----Ccc------cceeeeCCCCEEEE
Q psy16567 37 GPSIQVCK-GDTIIVDVKNHMIDREVTLHWHGVYQKVTPWM-----D----G-----VPM------VTQCPIPSSTTFRY 95 (127)
Q Consensus 37 gP~i~v~~-Gd~v~v~~~N~~~~~~~siH~HG~~~~~~~~~-----D----G-----~~~------~~~~~i~PG~~~~y 95 (127)
-..|.|+. +.+|+|+|.|... .+...--|..-....... | | ++. .....|.|||+.+.
T Consensus 15 ~~~i~V~a~~k~vtv~l~h~G~-lpk~~MgHN~Vl~k~~d~~~v~~~g~~ag~~~~Yvp~~d~~ViAhTkliggGes~sv 93 (125)
T TIGR02695 15 TKSISVPKSCKEFTVNLKHTGK-LPKAVMGHNWVLAKSADMQAVATDGMSAGADNNYVKPGDARVIAHTKVIGGGEKTSV 93 (125)
T ss_pred ccEEEEcCCCcEEEEEEecCCc-CchhccCccEEEeccccHHHHHHHHHhcccccCccCCCCcceEEEccccCCCceEEE
Confidence 46799998 5899999999865 444443343211100000 0 1 111 01123789999999
Q ss_pred EEeCC--Ccee-eEEccCCCCCc
Q psy16567 96 KFPAM--PSGT-FFYHSHVDRRP 115 (127)
Q Consensus 96 ~~~~~--~~Gt-~~yH~H~~~~~ 115 (127)
.|++. ++|. |-|-|-+-+|.
T Consensus 94 tF~~~~l~~g~~Y~f~CSFPGH~ 116 (125)
T TIGR02695 94 TFDVSKLSAGEDYTFFCSFPGHW 116 (125)
T ss_pred EEECCCCCCCCcceEEEcCCCcH
Confidence 99985 6885 99999887764
No 53
>COG4263 NosZ Nitrous oxide reductase [Energy production and conversion]
Probab=96.12 E-value=0.039 Score=46.07 Aligned_cols=74 Identities=22% Similarity=0.204 Sum_probs=51.7
Q ss_pred CeEEEecCCEEEEEEEcCCCCCceEEEEeeeeeecCCCCCCCcccceeeeCCCCEEEEEEeCCCceeeEEccC----C-C
Q psy16567 38 PSIQVCKGDTIIVDVKNHMIDREVTLHWHGVYQKVTPWMDGVPMVTQCPIPSSTTFRYKFPAMPSGTFFYHSH----V-D 112 (127)
Q Consensus 38 P~i~v~~Gd~v~v~~~N~~~~~~~siH~HG~~~~~~~~~DG~~~~~~~~i~PG~~~~y~~~~~~~Gt~~yH~H----~-~ 112 (127)
-.+.|++||.|++.++|-...+..+ ||.-.+. -|+ ...+.|-++-.|.|.++.+|.+||.|- . .
T Consensus 558 ~ef~Vkq~DEVt~l~tnld~Ved~t---hgfv~p~----~~v----~~~v~pq~tasvtf~a~kpgv~w~ycs~fchalh 626 (637)
T COG4263 558 TEFKVKQGDEVTVLTTNLDEVEDLT---HGFVIPN----YGV----NMEVKPQRTASVTFYADKPGVAWYYCSWFCHALH 626 (637)
T ss_pred EEEEEecCcEEEEEecccceecccc---ceeeecc----Cce----EEEEccCCceEEEEEccCCeeeehhhhhHHHHHH
Confidence 3488888999988888865522222 5654332 122 125889999999999999999999973 2 3
Q ss_pred CCceeeEEEE
Q psy16567 113 RRPYCPEIEE 122 (127)
Q Consensus 113 ~~~~g~liV~ 122 (127)
.++.|-+|||
T Consensus 627 ~em~~rmlve 636 (637)
T COG4263 627 MEMAGRMLVE 636 (637)
T ss_pred Hhhccceeec
Confidence 3448888886
No 54
>PRK10378 inactive ferrous ion transporter periplasmic protein EfeO; Provisional
Probab=95.88 E-value=0.16 Score=41.40 Aligned_cols=80 Identities=14% Similarity=0.134 Sum_probs=55.0
Q ss_pred CCCCCCCeEEEecCCEEEEEEEcCCCCCceEEEEeeeeeecCCCCCCCcc-cceeeeCCCCEEEEEEeCCCceeeEEccC
Q psy16567 32 NRQLPGPSIQVCKGDTIIVDVKNHMIDREVTLHWHGVYQKVTPWMDGVPM-VTQCPIPSSTTFRYKFPAMPSGTFFYHSH 110 (127)
Q Consensus 32 ng~~pgP~i~v~~Gd~v~v~~~N~~~~~~~siH~HG~~~~~~~~~DG~~~-~~~~~i~PG~~~~y~~~~~~~Gt~~yH~H 110 (127)
+..+-...+.++.|+ +++.++|... .++-+-.- +|..- .....|.||.+..+.+++ .||+|-|+|-
T Consensus 38 d~~c~p~~~tVpAG~-~~f~V~N~~~-~~~Efe~~----------~~~~vv~e~EnIaPG~s~~l~~~L-~pGtY~~~C~ 104 (375)
T PRK10378 38 DKQCEPMTLTVNAGK-TQFIIQNHSQ-KALEWEIL----------KGVMVVEERENIAPGFSQKMTANL-QPGEYDMTCG 104 (375)
T ss_pred CCccccCceeeCCCC-EEEEEEeCCC-CcceEEee----------ccccccccccccCCCCceEEEEec-CCceEEeecC
Confidence 446666779999996 8888999887 55432211 11100 011258999998887777 7999999996
Q ss_pred CCCCceeeEEEEcC
Q psy16567 111 VDRRPYCPEIEEKK 124 (127)
Q Consensus 111 ~~~~~~g~liV~d~ 124 (127)
+...+-|.++|..+
T Consensus 105 ~~~~~~g~l~Vtg~ 118 (375)
T PRK10378 105 LLTNPKGKLIVKGE 118 (375)
T ss_pred cCCCCCceEEEeCC
Confidence 65545789999754
No 55
>TIGR02866 CoxB cytochrome c oxidase, subunit II. Cytochrome c oxidase is the terminal electron acceptor of mitochondria (and one of several possible acceptors in prokaryotes) in the electron transport chain of aerobic respiration. The enzyme couples the oxidation of reduced cytochrome c with the reduction of molecular oxygen to water. This process results in the pumping of four protons across the membrane which are used in the proton gradient powered synthesis of ATP. The oxidase contains two heme a cofactors and three copper atoms as well as other bound ions.
Probab=95.61 E-value=0.095 Score=38.78 Aligned_cols=72 Identities=11% Similarity=0.107 Sum_probs=52.3
Q ss_pred CeEEEecCCEEEEEEEcCCCCCceEEEEeeeeeecCCCCCCCcccceeeeCCCCEEEEEEeCCCceeeEEccCC-----C
Q psy16567 38 PSIQVCKGDTIIVDVKNHMIDREVTLHWHGVYQKVTPWMDGVPMVTQCPIPSSTTFRYKFPAMPSGTFFYHSHV-----D 112 (127)
Q Consensus 38 P~i~v~~Gd~v~v~~~N~~~~~~~siH~HG~~~~~~~~~DG~~~~~~~~i~PG~~~~y~~~~~~~Gt~~yH~H~-----~ 112 (127)
..|.+..|++|++++++..- - ||+..+. . |. +.-+-||..-+..|+++++|+|...|.- .
T Consensus 117 ~~l~vp~g~~v~~~~ts~DV--~-----Hsf~ip~---~-~~----k~da~PG~~~~~~~~~~~~G~y~~~c~e~cG~~h 181 (201)
T TIGR02866 117 NELVVPAGTPVRLQVTSKDV--I-----HSFWVPE---L-GG----KIDAIPGQYNALWFNADEPGVYYGYCAELCGAGH 181 (201)
T ss_pred CEEEEEcCCEEEEEEEeCch--h-----hcccccc---c-Cc----eEEecCCcEEEEEEEeCCCEEEEEEehhhCCcCc
Confidence 57999999999999998542 2 6665432 1 11 1125799999999999999999999964 2
Q ss_pred CCceeeEEEEcC
Q psy16567 113 RRPYCPEIEEKK 124 (127)
Q Consensus 113 ~~~~g~liV~d~ 124 (127)
..+.+-++|.++
T Consensus 182 ~~M~~~v~v~~~ 193 (201)
T TIGR02866 182 SLMLFKVVVVER 193 (201)
T ss_pred cCCeEEEEEECH
Confidence 334777777654
No 56
>COG1622 CyoA Heme/copper-type cytochrome/quinol oxidases, subunit 2 [Energy production and conversion]
Probab=94.12 E-value=0.69 Score=35.60 Aligned_cols=73 Identities=11% Similarity=-0.016 Sum_probs=52.7
Q ss_pred CCeEEEecCCEEEEEEEcCCCCCceEEEEeeeeeecCCCCCCCcccceeeeCCCCEEEEEEeCCCceeeEEccCC-----
Q psy16567 37 GPSIQVCKGDTIIVDVKNHMIDREVTLHWHGVYQKVTPWMDGVPMVTQCPIPSSTTFRYKFPAMPSGTFFYHSHV----- 111 (127)
Q Consensus 37 gP~i~v~~Gd~v~v~~~N~~~~~~~siH~HG~~~~~~~~~DG~~~~~~~~i~PG~~~~y~~~~~~~Gt~~yH~H~----- 111 (127)
...|.+..|.+|++.++-.. .- |++..+... + +.-+-||...+..++++++|+|.-.|.-
T Consensus 136 ~n~l~lPv~~~V~f~ltS~D--Vi-----HsF~IP~l~---~-----k~d~iPG~~~~~~~~~~~~G~Y~g~Cae~CG~g 200 (247)
T COG1622 136 VNELVLPVGRPVRFKLTSAD--VI-----HSFWIPQLG---G-----KIDAIPGMTTELWLTANKPGTYRGICAEYCGPG 200 (247)
T ss_pred cceEEEeCCCeEEEEEEech--hc-----eeEEecCCC---c-----eeeecCCceEEEEEecCCCeEEEEEcHhhcCCC
Confidence 37899999999999987653 33 555543311 1 1125789999999999999999999964
Q ss_pred CCCceeeEEEEcC
Q psy16567 112 DRRPYCPEIEEKK 124 (127)
Q Consensus 112 ~~~~~g~liV~d~ 124 (127)
...|-+.++|.++
T Consensus 201 H~~M~~~v~vvs~ 213 (247)
T COG1622 201 HSFMRFKVIVVSQ 213 (247)
T ss_pred cccceEEEEEEcH
Confidence 2334788888754
No 57
>COG4454 Uncharacterized copper-binding protein [Inorganic ion transport and metabolism]
Probab=92.84 E-value=1.5 Score=31.64 Aligned_cols=82 Identities=10% Similarity=0.020 Sum_probs=54.3
Q ss_pred CCCCeEEEecCCEEEEEEEcCCCCCceEEEEeeeeee-----------cCCCCCCCcccceeeeCCCCEEEEEEeCCCce
Q psy16567 35 LPGPSIQVCKGDTIIVDVKNHMIDREVTLHWHGVYQK-----------VTPWMDGVPMVTQCPIPSSTTFRYKFPAMPSG 103 (127)
Q Consensus 35 ~pgP~i~v~~Gd~v~v~~~N~~~~~~~siH~HG~~~~-----------~~~~~DG~~~~~~~~i~PG~~~~y~~~~~~~G 103 (127)
|++..+.++.|++++..+.|... -.|= -.+..+ ..+.+++. ......+.||++-+..|...++|
T Consensus 60 f~p~~~~v~aG~tv~~v~~n~~e-l~he---f~~~~~~~~~~~~~~~~~~~Dme~d-~~~~v~L~PG~s~elvv~ft~~g 134 (158)
T COG4454 60 FKPSSFEVKAGETVRFVLKNEGE-LKHE---FTMDAPDKNLEHVTHMILADDMEHD-DPNTVTLAPGKSGELVVVFTGAG 134 (158)
T ss_pred cCCCcccccCCcEEeeeecCccc-ceEE---EeccCccccchhHHHhhhCCccccC-CcceeEeCCCCcEEEEEEecCCc
Confidence 46677999999999999988764 2221 111111 00111221 11123589999999999999999
Q ss_pred eeEEccCCCCCc----eeeEEE
Q psy16567 104 TFFYHSHVDRRP----YCPEIE 121 (127)
Q Consensus 104 t~~yH~H~~~~~----~g~liV 121 (127)
.|-+.|-+.+|+ .|.|-|
T Consensus 135 ~ye~~C~iPGHy~AGM~g~itV 156 (158)
T COG4454 135 KYEFACNIPGHYEAGMVGEITV 156 (158)
T ss_pred cEEEEecCCCcccCCcEEEEEe
Confidence 999999888886 555544
No 58
>PF12690 BsuPI: Intracellular proteinase inhibitor; InterPro: IPR020481 BsuPI is a intracellular proteinase inhibitor that directly regulates the major intracellular proteinase (ISP-1) activity in vivo. It inhibits ISP-1 in the early stages of sporulation and then may be inactivated by a membrane-bound proteinase [].; PDB: 3ISY_A.
Probab=91.31 E-value=2.6 Score=26.86 Aligned_cols=58 Identities=16% Similarity=0.206 Sum_probs=30.4
Q ss_pred CeEEEecCCEEEEEEEcCCCCCceEEEEeeeeeecCCCCCCCcc---cceeeeCCCCEEEEEEeCC--C--ceeeEE
Q psy16567 38 PSIQVCKGDTIIVDVKNHMIDREVTLHWHGVYQKVTPWMDGVPM---VTQCPIPSSTTFRYKFPAM--P--SGTFFY 107 (127)
Q Consensus 38 P~i~v~~Gd~v~v~~~N~~~~~~~siH~HG~~~~~~~~~DG~~~---~~~~~i~PG~~~~y~~~~~--~--~Gt~~y 107 (127)
=+|+..-|++..+.|.|... . .+- .|++|..+ +....|.||++.+|+...+ . +|+|..
T Consensus 16 v~l~f~sgq~~D~~v~d~~g-~---------~vw--rwS~~~~FtQal~~~~l~pGe~~~~~~~~~~~~~~~G~Y~~ 80 (82)
T PF12690_consen 16 VTLQFPSGQRYDFVVKDKEG-K---------EVW--RWSDGKMFTQALQEETLEPGESLTYEETWDLKDLSPGEYTL 80 (82)
T ss_dssp EEEEESSS--EEEEEE-TT------------EEE--ETTTT-------EEEEE-TT-EEEEEEEESS----SEEEEE
T ss_pred EEEEeCCCCEEEEEEECCCC-C---------EEE--EecCCchhhheeeEEEECCCCEEEEEEEECCCCCCCceEEE
Confidence 34666666666666665433 1 111 26777655 3445689999999999874 3 788853
No 59
>COG4263 NosZ Nitrous oxide reductase [Energy production and conversion]
Probab=89.85 E-value=0.95 Score=38.10 Aligned_cols=92 Identities=8% Similarity=-0.089 Sum_probs=65.0
Q ss_pred CCCccccCcceEeecCCceEEEEEECCC-CC-CCeEEEecCCEEEEEEEcCCCCCceEEEEeeeeeecCCCCCCCcccce
Q psy16567 7 KGNQKACRRKGCVTADGFERAILSINRQ-LP-GPSIQVCKGDTIIVDVKNHMIDREVTLHWHGVYQKVTPWMDGVPMVTQ 84 (127)
Q Consensus 7 ~~~~~~~~~~~~v~~~G~~~~~~~~ng~-~p-gP~i~v~~Gd~v~v~~~N~~~~~~~siH~HG~~~~~~~~~DG~~~~~~ 84 (127)
|++. .-+......|+.+.++..-+|. .- -.+..+++++.+++.++|.. ..+.-.||++.. .|+. .
T Consensus 517 f~i~--v~~~~e~g~Dlmk~n~vvr~g~kv~v~~~staps~~l~ef~Vkq~D---EVt~l~tnld~V----ed~t----h 583 (637)
T COG4263 517 FAIA--VKVAKEDGRDLMKVNVVVRSGNKVRVYMTSTAPSFGLTEFKVKQGD---EVTVLTTNLDEV----EDLT----H 583 (637)
T ss_pred chhh--hhchhhhhhccccceeEEecCCceEEEEeeccCCCceEEEEEecCc---EEEEEeccccee----cccc----c
Confidence 4444 4555666677766655555553 11 14567889999999999975 367777888763 2443 2
Q ss_pred eeeCCCCEEEEEEeCCCceeeEEccCC
Q psy16567 85 CPIPSSTTFRYKFPAMPSGTFFYHSHV 111 (127)
Q Consensus 85 ~~i~PG~~~~y~~~~~~~Gt~~yH~H~ 111 (127)
..+.|.....+.|.++++|++||.|--
T Consensus 584 gfv~p~~~v~~~v~pq~tasvtf~a~k 610 (637)
T COG4263 584 GFVIPNYGVNMEVKPQRTASVTFYADK 610 (637)
T ss_pred eeeeccCceEEEEccCCceEEEEEccC
Confidence 247889999999999999999999854
No 60
>PF05938 Self-incomp_S1: Plant self-incompatibility protein S1; InterPro: IPR010264 This family consists of a series of plant proteins which are related to the Papaver rhoeas S1 self-incompatibility protein. Self-incompatibility (SI) is the single most important outbreeding device found in angiosperms and is a mechanism that regulates the acceptance or rejection of pollen. S1 is known to exhibit specific pollen-inhibitory properties [].
Probab=89.62 E-value=1.4 Score=29.25 Aligned_cols=56 Identities=16% Similarity=0.167 Sum_probs=37.6
Q ss_pred EEEEEcCCCCCceEEEEeeeeeecCCCCCCCcccceeeeCCCCEEEEEEeCCCceeeEEccCCCC
Q psy16567 49 IVDVKNHMIDREVTLHWHGVYQKVTPWMDGVPMVTQCPIPSSTTFRYKFPAMPSGTFFYHSHVDR 113 (127)
Q Consensus 49 ~v~~~N~~~~~~~siH~HG~~~~~~~~~DG~~~~~~~~i~PG~~~~y~~~~~~~Gt~~yH~H~~~ 113 (127)
.|+|+|.+. ....+.+|=-.-. .| ++.-.+.||+++.++|..+-.|+-.|.|++..
T Consensus 2 ~V~I~N~L~-~~~~L~vhC~S~d----~D----lg~~~l~~g~~~~~~F~~~~~~~t~f~C~~~~ 57 (110)
T PF05938_consen 2 HVVIINNLG-PGKILTVHCKSKD----DD----LGWHVLKPGQSYSFSFRDNFFGTTLFWCHFRW 57 (110)
T ss_pred EEEEEECCC-CCCeEEEEeeCCC----cc----CCCEECCCCCEEEEEEecCcCCceeEEEEEEE
Confidence 578899985 4455555443210 12 22235899999999998776687778898755
No 61
>MTH00047 COX2 cytochrome c oxidase subunit II; Provisional
Probab=88.48 E-value=5.9 Score=29.35 Aligned_cols=73 Identities=8% Similarity=-0.096 Sum_probs=49.8
Q ss_pred eEEEecCCEEEEEEEcCCCCCceEEEEeeeeeecCCCCCCCcccceeeeCCCCEEEEEEeCCCceeeEEccCC-----CC
Q psy16567 39 SIQVCKGDTIIVDVKNHMIDREVTLHWHGVYQKVTPWMDGVPMVTQCPIPSSTTFRYKFPAMPSGTFFYHSHV-----DR 113 (127)
Q Consensus 39 ~i~v~~Gd~v~v~~~N~~~~~~~siH~HG~~~~~~~~~DG~~~~~~~~i~PG~~~~y~~~~~~~Gt~~yH~H~-----~~ 113 (127)
.+.+..|.+|+++++-.. .- |++..+.. . ... -.-||..-...|+++++|+|.--|.- ..
T Consensus 117 ~l~lp~g~~v~~~ltS~D--Vi-----Hsf~vp~l---~----~k~-d~~PG~~~~~~~~~~~~G~y~g~C~e~CG~~H~ 181 (194)
T MTH00047 117 PLRLVYGVPYHLLVTSSD--VI-----HSFSVPDL---N----LKM-DAIPGRINHLFFCPDRHGVFVGYCSELCGVGHS 181 (194)
T ss_pred eEEEeCCCEEEeeeecCc--cc-----cceecccc---C----cee-ecCCCceEEEEEEcCCCEEEEEEeehhhCcCcc
Confidence 488899999999887543 33 44444321 1 111 14689999999999999999999863 22
Q ss_pred CceeeEEEEcCCC
Q psy16567 114 RPYCPEIEEKKKT 126 (127)
Q Consensus 114 ~~~g~liV~d~~~ 126 (127)
.+.+.+.|.++++
T Consensus 182 ~M~~~v~v~~~~~ 194 (194)
T MTH00047 182 YMPIVIEVVDVDS 194 (194)
T ss_pred cCcEEEEEEcCCC
Confidence 3466777777664
No 62
>PF05506 DUF756: Domain of unknown function (DUF756); InterPro: IPR008475 This domain is found, normally as a tandem repeat, at the C terminus of bacterial phospholipase C proteins.; GO: 0004629 phospholipase C activity, 0016042 lipid catabolic process
Probab=88.31 E-value=4.8 Score=25.60 Aligned_cols=55 Identities=13% Similarity=0.099 Sum_probs=37.8
Q ss_pred CCeEEEec---CCEEEEEEEcCCCCCceEEEEeeeeeecCCCCCCCcccceeeeCCCCEEEEEEeC
Q psy16567 37 GPSIQVCK---GDTIIVDVKNHMIDREVTLHWHGVYQKVTPWMDGVPMVTQCPIPSSTTFRYKFPA 99 (127)
Q Consensus 37 gP~i~v~~---Gd~v~v~~~N~~~~~~~siH~HG~~~~~~~~~DG~~~~~~~~i~PG~~~~y~~~~ 99 (127)
.|.+.++. ...|+|+|.|... ....+.+....+ ..+. ..+..|.||++.+..|.+
T Consensus 8 ~~~v~~~~~~~~g~l~l~l~N~g~-~~~~~~v~~~~y-----~~~~--~~~~~v~ag~~~~~~w~l 65 (89)
T PF05506_consen 8 APEVTARYDPATGNLRLTLSNPGS-AAVTFTVYDNAY-----GGGG--PWTYTVAAGQTVSLTWPL 65 (89)
T ss_pred CCEEEEEEECCCCEEEEEEEeCCC-CcEEEEEEeCCc-----CCCC--CEEEEECCCCEEEEEEee
Confidence 46666653 3589999999988 777777665322 1111 123468999999999987
No 63
>PRK13202 ureB urease subunit beta; Reviewed
Probab=85.09 E-value=5.4 Score=26.78 Aligned_cols=60 Identities=17% Similarity=0.159 Sum_probs=37.4
Q ss_pred eEEEecC--CEEEEEEEcCCCCCceEE--EEeeeeeecCCCCC-----C----CcccceeeeCCCCEEEEEEeC
Q psy16567 39 SIQVCKG--DTIIVDVKNHMIDREVTL--HWHGVYQKVTPWMD-----G----VPMVTQCPIPSSTTFRYKFPA 99 (127)
Q Consensus 39 ~i~v~~G--d~v~v~~~N~~~~~~~si--H~HG~~~~~~~~~D-----G----~~~~~~~~i~PG~~~~y~~~~ 99 (127)
.|.+++| ++++|+++|..+ .+.-+ |+|=+........| | .|.-+..-.+||++++..+..
T Consensus 12 ~I~ln~grr~~~~l~V~NtGD-RPIQVGSHyHF~E~N~aL~FDR~~A~G~RLdIpaGTavRFEPG~~k~V~LV~ 84 (104)
T PRK13202 12 DIEMNAAALSRLQMRIINAGD-RPVQVGSHVHLPQANRALSFDRATAHGYRLDIPAATAVRFEPGIPQIVGLVP 84 (104)
T ss_pred CEEeCCCCCceEEEEEEeCCC-CceEEccccchhhcCcceeecHhHhcCcccccCCCCeEEECCCCeEEEEEEE
Confidence 4889999 589999999998 76555 55544332211111 1 111122236899999999874
No 64
>PF10633 NPCBM_assoc: NPCBM-associated, NEW3 domain of alpha-galactosidase; InterPro: IPR018905 This domain has been named NEW3, but its function is not known. It is found on proteins which are bacterial galactosidases [].; PDB: 1EUT_A 2BZD_A 1WCQ_C 2BER_A 1W8O_A 1EUU_A 1W8N_A.
Probab=81.56 E-value=5.7 Score=24.47 Aligned_cols=59 Identities=19% Similarity=0.320 Sum_probs=26.5
Q ss_pred ecCC--EEEEEEEcCCCCCc---eEEEEeeeeeecCCCCCCCcccceeeeCCCCEEEEEEeCC-----CceeeE
Q psy16567 43 CKGD--TIIVDVKNHMIDRE---VTLHWHGVYQKVTPWMDGVPMVTQCPIPSSTTFRYKFPAM-----PSGTFF 106 (127)
Q Consensus 43 ~~Gd--~v~v~~~N~~~~~~---~siH~HG~~~~~~~~~DG~~~~~~~~i~PG~~~~y~~~~~-----~~Gt~~ 106 (127)
+.|+ ++.++|.|... .+ ..+-+- .+..|...........|.||++.+..|.+. .+|+|.
T Consensus 2 ~~G~~~~~~~tv~N~g~-~~~~~v~~~l~----~P~GW~~~~~~~~~~~l~pG~s~~~~~~V~vp~~a~~G~y~ 70 (78)
T PF10633_consen 2 TPGETVTVTLTVTNTGT-APLTNVSLSLS----LPEGWTVSASPASVPSLPPGESVTVTFTVTVPADAAPGTYT 70 (78)
T ss_dssp -TTEEEEEEEEEE--SS-S-BSS-EEEEE------TTSE---EEEEE--B-TTSEEEEEEEEEE-TT--SEEEE
T ss_pred CCCCEEEEEEEEEECCC-CceeeEEEEEe----CCCCccccCCccccccCCCCCEEEEEEEEECCCCCCCceEE
Confidence 4565 45577779875 22 222221 123454211111222589999999999873 468864
No 65
>MTH00140 COX2 cytochrome c oxidase subunit II; Provisional
Probab=80.11 E-value=10 Score=28.64 Aligned_cols=72 Identities=11% Similarity=-0.084 Sum_probs=49.0
Q ss_pred CeEEEecCCEEEEEEEcCCCCCceEEEEeeeeeecCCCCCCCcccceeeeCCCCEEEEEEeCCCceeeEEccCC-----C
Q psy16567 38 PSIQVCKGDTIIVDVKNHMIDREVTLHWHGVYQKVTPWMDGVPMVTQCPIPSSTTFRYKFPAMPSGTFFYHSHV-----D 112 (127)
Q Consensus 38 P~i~v~~Gd~v~v~~~N~~~~~~~siH~HG~~~~~~~~~DG~~~~~~~~i~PG~~~~y~~~~~~~Gt~~yH~H~-----~ 112 (127)
..|.+..|.+|++.+++.. .- |+...+. -|.. . -.-||..-...+.++.+|+|+-.|.- +
T Consensus 140 n~l~lP~~~~v~~~~ts~D--Vi-----Hsf~ip~----~~~k---~-d~~Pg~~~~~~~~~~~~g~y~~~C~e~CG~~H 204 (228)
T MTH00140 140 NRLVLPYSVDTRVLVTSAD--VI-----HSWTVPS----LGVK---V-DAIPGRLNQLSFEPKRPGVFYGQCSEICGANH 204 (228)
T ss_pred CeEEEeeCcEEEEEEEcCc--cc-----cceeccc----cCce---e-ECCCCcceeEEEEeCCCEEEEEECccccCcCc
Confidence 5689999999999999854 23 5554432 1211 1 25689999999999999999998853 2
Q ss_pred CCceeeEEEEcC
Q psy16567 113 RRPYCPEIEEKK 124 (127)
Q Consensus 113 ~~~~g~liV~d~ 124 (127)
..+.+.++|.++
T Consensus 205 ~~M~~~v~v~~~ 216 (228)
T MTH00140 205 SFMPIVVEAVPL 216 (228)
T ss_pred CCCeEEEEEECH
Confidence 223555555443
No 66
>PRK13203 ureB urease subunit beta; Reviewed
Probab=79.11 E-value=13 Score=24.95 Aligned_cols=60 Identities=22% Similarity=0.298 Sum_probs=36.9
Q ss_pred eEEEecC-CEEEEEEEcCCCCCceEE--EEeeeeeecCCCCC-----C----CcccceeeeCCCCEEEEEEeC
Q psy16567 39 SIQVCKG-DTIIVDVKNHMIDREVTL--HWHGVYQKVTPWMD-----G----VPMVTQCPIPSSTTFRYKFPA 99 (127)
Q Consensus 39 ~i~v~~G-d~v~v~~~N~~~~~~~si--H~HG~~~~~~~~~D-----G----~~~~~~~~i~PG~~~~y~~~~ 99 (127)
.|.+++| ++++|+++|..+ .+.-+ |+|=.........| | .|.-+..-.+||++++.++..
T Consensus 12 ~I~ln~gr~~~~l~V~NtGD-RPIQVGSH~HF~E~N~aL~FDR~~A~G~RLdIpaGTavRFEPG~~k~V~LV~ 83 (102)
T PRK13203 12 EIELNAGRETVTLTVANTGD-RPIQVGSHYHFFEVNPALSFDREAARGMRLNIPAGTAVRFEPGQTREVELVP 83 (102)
T ss_pred CEEeCCCCCEEEEEEEeCCC-CceEEccccchhhcCcchhccHhhhcCcccccCCCCeEeECCCCeEEEEEEE
Confidence 3778887 789999999998 76555 55544332211112 1 111122236899999998874
No 67
>TIGR00192 urease_beta urease, beta subunit. In a number of species, including B.subtilis, Synechocystis, and Haemophilus influenzae, urease subunits beta and gamma are encoded as separate polypeptides. In Helicobacter pylori UreA and in the fission yeast Schizosaccharomyces pombe, beta subunit-like sequence follows gamma subunit-like sequence in a single chain; the fission yeast protein contains additional C-terminal regions.
Probab=78.75 E-value=13 Score=24.80 Aligned_cols=60 Identities=25% Similarity=0.293 Sum_probs=36.8
Q ss_pred eEEEecC-CEEEEEEEcCCCCCceEE--EEeeeeeecCCCCC-----C----CcccceeeeCCCCEEEEEEeC
Q psy16567 39 SIQVCKG-DTIIVDVKNHMIDREVTL--HWHGVYQKVTPWMD-----G----VPMVTQCPIPSSTTFRYKFPA 99 (127)
Q Consensus 39 ~i~v~~G-d~v~v~~~N~~~~~~~si--H~HG~~~~~~~~~D-----G----~~~~~~~~i~PG~~~~y~~~~ 99 (127)
.|.++.| ++++|.+.|..+ .+.-+ |+|=.........| | .|.-+..-.+||++++..+..
T Consensus 12 ~I~ln~gr~~~~l~V~NtGD-RPIQVGSHyHF~E~N~aL~FDR~~A~G~RLdIpaGTavRFEPG~~k~V~LV~ 83 (101)
T TIGR00192 12 DITINEGRKTVSVKVKNTGD-RPIQVGSHFHFFEVNRALDFDRELAFGMRLDIPSGTAVRFEPGEEKSVELVA 83 (101)
T ss_pred CEEeCCCCcEEEEEEEeCCC-cceEEccccchhhcCcceeecHhhhcCcccccCCCCeEeECCCCeEEEEEEE
Confidence 3778887 789999999998 76555 55544332211111 1 111122236899999998874
No 68
>PF04744 Monooxygenase_B: Monooxygenase subunit B protein; InterPro: IPR006833 Ammonia monooxygenase and the particulate methane monooxygenase are both integral membrane proteins, occurring in ammonia oxidisers and methanotrophs respectively, which are thought to be evolutionarily related []. These enzymes have a relatively wide substrate specificity and can catalyse the oxidation of a range of substrates including ammonia, methane, halogenated hydrocarbons and aromatic molecules []. These enzymes are composed of 3 subunits - A (IPR003393 from INTERPRO), B (IPR006833 from INTERPRO) and C (IPR006980 from INTERPRO) - and contain various metal centres, including copper. Particulate methane monooxygenase from Methylococcus capsulatus str. Bath is an ABC homotrimer, which contains mononuclear and dinuclear copper metal centres, and a third metal centre containing a metal ion whose identity in vivo is not certain[]. The soluble regions of these enzymes derive primarily from the B subunit. This subunit forms two antiparallel beta-barrel-like structures and contains the mono- and di- nuclear copper metal centres [].; PDB: 3CHX_E 3RFR_A 3RGB_A 1YEW_A.
Probab=77.34 E-value=1.5 Score=35.75 Aligned_cols=46 Identities=20% Similarity=0.476 Sum_probs=27.1
Q ss_pred CCCCCcccceeeeCCCCEEEEEEeC--CCceeeEEccCCCCCceeeEE
Q psy16567 75 WMDGVPMVTQCPIPSSTTFRYKFPA--MPSGTFFYHSHVDRRPYCPEI 120 (127)
Q Consensus 75 ~~DG~~~~~~~~i~PG~~~~y~~~~--~~~Gt~~yH~H~~~~~~g~li 120 (127)
|..|.+......+..|+++.|+..+ ..||+|.-|.-++....|++|
T Consensus 71 ~ing~~~p~S~~le~G~~y~fki~lkar~pG~~hvh~~~nv~~~Gp~~ 118 (381)
T PF04744_consen 71 WINGQPVPRSVSLELGGTYEFKIVLKARRPGTWHVHPMLNVEDAGPIV 118 (381)
T ss_dssp EETTEE-SS-B---TT-EEEEEEEEEE-S-EEEEEEEEEEETTTEEEE
T ss_pred eecCccccceEEeecCCeeeEEEEEecccCccccceeeEeeccCCCCc
Confidence 5556544444468899999888876 689999888876665556554
No 69
>PF04744 Monooxygenase_B: Monooxygenase subunit B protein; InterPro: IPR006833 Ammonia monooxygenase and the particulate methane monooxygenase are both integral membrane proteins, occurring in ammonia oxidisers and methanotrophs respectively, which are thought to be evolutionarily related []. These enzymes have a relatively wide substrate specificity and can catalyse the oxidation of a range of substrates including ammonia, methane, halogenated hydrocarbons and aromatic molecules []. These enzymes are composed of 3 subunits - A (IPR003393 from INTERPRO), B (IPR006833 from INTERPRO) and C (IPR006980 from INTERPRO) - and contain various metal centres, including copper. Particulate methane monooxygenase from Methylococcus capsulatus str. Bath is an ABC homotrimer, which contains mononuclear and dinuclear copper metal centres, and a third metal centre containing a metal ion whose identity in vivo is not certain[]. The soluble regions of these enzymes derive primarily from the B subunit. This subunit forms two antiparallel beta-barrel-like structures and contains the mono- and di- nuclear copper metal centres [].; PDB: 3CHX_E 3RFR_A 3RGB_A 1YEW_A.
Probab=76.64 E-value=7.8 Score=31.67 Aligned_cols=17 Identities=24% Similarity=0.268 Sum_probs=11.3
Q ss_pred eeeeCCCCEEEEEEeCC
Q psy16567 84 QCPIPSSTTFRYKFPAM 100 (127)
Q Consensus 84 ~~~i~PG~~~~y~~~~~ 100 (127)
..||+|||+++....++
T Consensus 318 ~~pI~PGETrtl~V~a~ 334 (381)
T PF04744_consen 318 NSPIAPGETRTLTVEAQ 334 (381)
T ss_dssp -S-B-TT-EEEEEEEEE
T ss_pred CCCcCCCceEEEEEEee
Confidence 34899999999999874
No 70
>cd00407 Urease_beta Urease beta-subunit; Urease is a nickel-dependent metalloenzyme that catalyzes the hydrolysis of urea to form ammonia and carbon dioxide. Nickel-dependent ureases are found in bacteria, archaea, fungi and plants. Their primary role is to allow the use of external and internally-generated urea as a nitrogen source. The enzyme consists of three subunits, alpha, beta and gamma, which can exist as separate proteins or can be fused on a single protein chain. The alpha-beta-gamma heterotrimer forms multimers, mainly trimers. The large alpha subunit is the catalytic domain containing an active site with a bi-nickel center complexed by a carbamylated lysine. The beta and gamma subunits play a role in subunit association to form the higher order trimers.
Probab=76.63 E-value=18 Score=24.20 Aligned_cols=60 Identities=20% Similarity=0.295 Sum_probs=36.6
Q ss_pred eEEEecC-CEEEEEEEcCCCCCceEE--EEeeeeeecCCCCC-----C----CcccceeeeCCCCEEEEEEeC
Q psy16567 39 SIQVCKG-DTIIVDVKNHMIDREVTL--HWHGVYQKVTPWMD-----G----VPMVTQCPIPSSTTFRYKFPA 99 (127)
Q Consensus 39 ~i~v~~G-d~v~v~~~N~~~~~~~si--H~HG~~~~~~~~~D-----G----~~~~~~~~i~PG~~~~y~~~~ 99 (127)
.|.++.| ++++|.++|..+ .+.-+ |+|=+........| | .|.-+..-.+||++++..+..
T Consensus 12 ~I~lN~gr~~~~l~V~NtGD-RpIQVGSH~HF~E~N~aL~FDR~~A~G~RLdIpaGTavRFEPG~~k~V~LV~ 83 (101)
T cd00407 12 DIELNAGREAVTLKVKNTGD-RPIQVGSHYHFFEVNPALKFDREKAYGMRLDIPAGTAVRFEPGEEKEVELVP 83 (101)
T ss_pred CeEeCCCCCEEEEEEEeCCC-cceEEccccchhhcCccccccHHHcccceecccCCCeEEECCCCeEEEEEEE
Confidence 3777777 689999999998 76555 55544332211122 1 111122236899999998874
No 71
>PRK13204 ureB urease subunit beta; Reviewed
Probab=73.18 E-value=19 Score=25.94 Aligned_cols=60 Identities=18% Similarity=0.247 Sum_probs=37.2
Q ss_pred eEEEecC-CEEEEEEEcCCCCCceEE--EEeeeeeecCCCCC-----C----CcccceeeeCCCCEEEEEEeC
Q psy16567 39 SIQVCKG-DTIIVDVKNHMIDREVTL--HWHGVYQKVTPWMD-----G----VPMVTQCPIPSSTTFRYKFPA 99 (127)
Q Consensus 39 ~i~v~~G-d~v~v~~~N~~~~~~~si--H~HG~~~~~~~~~D-----G----~~~~~~~~i~PG~~~~y~~~~ 99 (127)
.|.++.| ++++|.|.|..+ .+.-+ |+|=+........| | .|.-+..-.+||+++++.+..
T Consensus 35 ~I~lN~gr~~~~l~V~NtGD-RPIQVGSHyHF~EvN~aL~FDR~~A~G~RLdIPAGTAVRFEPG~~k~V~LV~ 106 (159)
T PRK13204 35 PIEINQGRPRTTLTVRNTGD-RPIQIGSHFHFFEVNRYLEFDRSKAFGLRLDIPANTAVRFEPGDEKEVTLVP 106 (159)
T ss_pred CeEeCCCCcEEEEEEEeCCC-CceEeccccchhhcCccccccHhhhcCcccccCCCCeEeECCCCeeEEEEEE
Confidence 3788888 789999999998 76555 55544332211112 1 111122236899999999874
No 72
>PRK13205 ureB urease subunit beta; Reviewed
Probab=73.08 E-value=19 Score=25.86 Aligned_cols=60 Identities=20% Similarity=0.238 Sum_probs=36.8
Q ss_pred eEEEecC-CEEEEEEEcCCCCCceEE--EEeeeeeecCCCCC-----C----CcccceeeeCCCCEEEEEEeC
Q psy16567 39 SIQVCKG-DTIIVDVKNHMIDREVTL--HWHGVYQKVTPWMD-----G----VPMVTQCPIPSSTTFRYKFPA 99 (127)
Q Consensus 39 ~i~v~~G-d~v~v~~~N~~~~~~~si--H~HG~~~~~~~~~D-----G----~~~~~~~~i~PG~~~~y~~~~ 99 (127)
.|.++.| ++++|.++|..+ .|.-+ |+|=+........| | .|.-+..-..||++++..+..
T Consensus 12 ~IelN~GR~~i~L~V~NtGD-RPIQVGSHyHF~EvN~AL~FDR~~A~G~RLdIPAGTAVRFEPGe~ktV~LV~ 83 (162)
T PRK13205 12 SLTGNVGREAKTIEIINTGD-RPVQIGSHFHFAEVNPSISFDRSEGYGFRLDIPSGTAVRLEPGDARTVNLVA 83 (162)
T ss_pred CeEeCCCCcEEEEEEEeCCC-CceEeccccchhhcCccccccHHHhcCcccccCCCCeEeECCCCeEEEEEEE
Confidence 3778888 789999999998 76555 55543332211112 1 111122236899999998873
No 73
>TIGR03079 CH4_NH3mon_ox_B methane monooxygenase/ammonia monooxygenase, subunit B. Both ammonia oxidizers such as Nitrosomonas europaea and methanotrophs (obligate methane oxidizers) such as Methylococcus capsulatus each can grow only on their own characteristic substrate. However, both groups have the ability to oxidize both substrates, and so the relevant enzymes must be named here according to their ability to oxidze both. The protein family represented here reflects subunit B of both the particulate methane monooxygenase of methylotrophs and the ammonia monooxygenase of nitrifying bacteria.
Probab=72.79 E-value=3.3 Score=33.77 Aligned_cols=46 Identities=13% Similarity=0.337 Sum_probs=31.4
Q ss_pred CCCCCcccceeeeCCCCEEEEEEeC--CCceeeEEccCCCCCceeeEE
Q psy16567 75 WMDGVPMVTQCPIPSSTTFRYKFPA--MPSGTFFYHSHVDRRPYCPEI 120 (127)
Q Consensus 75 ~~DG~~~~~~~~i~PG~~~~y~~~~--~~~Gt~~yH~H~~~~~~g~li 120 (127)
|..|.+.....++..|++++|+..+ ..||+|.-|.-++.+..|+||
T Consensus 91 ~lng~~~~~S~~LelG~dYefkv~lkaR~pG~~hvh~m~Nv~~~Gpii 138 (399)
T TIGR03079 91 KVNGMPVFISGPLEIGRDYEFEVTLQARIPGRHHMHAMLNVKDAGPIA 138 (399)
T ss_pred EECCEeecceeEeecCCceeEEEEEeeccCCcccceeEEEeccCCCCc
Confidence 4555433333457889998888765 689999888777666566554
No 74
>PRK13201 ureB urease subunit beta; Reviewed
Probab=72.00 E-value=23 Score=24.85 Aligned_cols=60 Identities=12% Similarity=0.222 Sum_probs=36.9
Q ss_pred eEEEecC-CEEEEEEEcCCCCCceEE--EEeeeeeecCCCCC-----C----CcccceeeeCCCCEEEEEEeC
Q psy16567 39 SIQVCKG-DTIIVDVKNHMIDREVTL--HWHGVYQKVTPWMD-----G----VPMVTQCPIPSSTTFRYKFPA 99 (127)
Q Consensus 39 ~i~v~~G-d~v~v~~~N~~~~~~~si--H~HG~~~~~~~~~D-----G----~~~~~~~~i~PG~~~~y~~~~ 99 (127)
.|.++.| ++++|.+.|..+ .+.-+ |+|=+........| | .|.-+..-..||++++..+..
T Consensus 12 ~I~lN~gr~~~~l~V~NtGD-RPIQVGSHyHF~EvN~aL~FDR~~A~G~RLdIPAGTAVRFEPG~~k~V~LV~ 83 (136)
T PRK13201 12 EVEINNHHPETVIEVENTGD-RPIQVGSHFHFYEANAALDFEREMAYGKHLDIPAGAAVRFEPGDKKEVQLVE 83 (136)
T ss_pred CeEeCCCCCEEEEEEEeCCC-cceEeccccchhhcCccccccHhhhcCcccccCCCCeEeECCCCeEEEEEEE
Confidence 3778888 789999999998 76555 55543332211112 1 111122236899999999874
No 75
>PRK13198 ureB urease subunit beta; Reviewed
Probab=71.39 E-value=21 Score=25.59 Aligned_cols=60 Identities=17% Similarity=0.158 Sum_probs=37.1
Q ss_pred eEEEecC-CEEEEEEEcCCCCCceEE--EEeeeeeecCCCCC-----C----CcccceeeeCCCCEEEEEEeC
Q psy16567 39 SIQVCKG-DTIIVDVKNHMIDREVTL--HWHGVYQKVTPWMD-----G----VPMVTQCPIPSSTTFRYKFPA 99 (127)
Q Consensus 39 ~i~v~~G-d~v~v~~~N~~~~~~~si--H~HG~~~~~~~~~D-----G----~~~~~~~~i~PG~~~~y~~~~ 99 (127)
.|.++.| +++.|.+.|..+ .+.-+ |+|=+........| | .|.-+..-.+||+++++.+..
T Consensus 40 ~I~lN~gr~~~~l~V~NtGD-RPIQVGSHyHF~EvN~aL~FDR~~A~G~RLdIPAGTAVRFEPG~~k~V~LV~ 111 (158)
T PRK13198 40 PITFNENKPVTKVKVRNTGD-RPIQVGSHFHFFEVNRALEFDRAAAYGKRLNISSTTAIRFEPGDETEVPLIP 111 (158)
T ss_pred CeEeCCCCcEEEEEEEeCCC-CceEeccccchhhcCccccccHhhhcCcccccCCCCeEeeCCCCeeEEEEEE
Confidence 3778888 789999999998 76555 55544332211111 1 111122236899999999874
No 76
>TIGR03079 CH4_NH3mon_ox_B methane monooxygenase/ammonia monooxygenase, subunit B. Both ammonia oxidizers such as Nitrosomonas europaea and methanotrophs (obligate methane oxidizers) such as Methylococcus capsulatus each can grow only on their own characteristic substrate. However, both groups have the ability to oxidize both substrates, and so the relevant enzymes must be named here according to their ability to oxidze both. The protein family represented here reflects subunit B of both the particulate methane monooxygenase of methylotrophs and the ammonia monooxygenase of nitrifying bacteria.
Probab=70.72 E-value=8.5 Score=31.49 Aligned_cols=20 Identities=25% Similarity=0.197 Sum_probs=16.0
Q ss_pred cceeeeCCCCEEEEEEeCCC
Q psy16567 82 VTQCPIPSSTTFRYKFPAMP 101 (127)
Q Consensus 82 ~~~~~i~PG~~~~y~~~~~~ 101 (127)
..+.||.|||+++.+..++.
T Consensus 335 ~d~~pI~PGETr~v~v~aqd 354 (399)
T TIGR03079 335 DDQSAIAPGETVEVKMEAKD 354 (399)
T ss_pred CCCCCcCCCcceEEEEEEeh
Confidence 34558999999999998853
No 77
>PRK05461 apaG CO2+/MG2+ efflux protein ApaG; Reviewed
Probab=69.45 E-value=21 Score=24.66 Aligned_cols=16 Identities=25% Similarity=0.343 Sum_probs=11.4
Q ss_pred eeeeCCCCEEEEEEeC
Q psy16567 84 QCPIPSSTTFRYKFPA 99 (127)
Q Consensus 84 ~~~i~PG~~~~y~~~~ 99 (127)
+..|.||++|+|.=-.
T Consensus 73 qP~L~PGe~F~Y~S~~ 88 (127)
T PRK05461 73 QPVLAPGESFEYTSGA 88 (127)
T ss_pred CceECCCCCeEEeCCC
Confidence 3457999988876543
No 78
>MTH00008 COX2 cytochrome c oxidase subunit II; Validated
Probab=66.98 E-value=31 Score=26.11 Aligned_cols=58 Identities=16% Similarity=0.030 Sum_probs=41.3
Q ss_pred CeEEEecCCEEEEEEEcCCCCCceEEEEeeeeeecCCCCCCCcccceeeeCCCCEEEEEEeCCCceeeEEccC
Q psy16567 38 PSIQVCKGDTIIVDVKNHMIDREVTLHWHGVYQKVTPWMDGVPMVTQCPIPSSTTFRYKFPAMPSGTFFYHSH 110 (127)
Q Consensus 38 P~i~v~~Gd~v~v~~~N~~~~~~~siH~HG~~~~~~~~~DG~~~~~~~~i~PG~~~~y~~~~~~~Gt~~yH~H 110 (127)
..+.+..|..|++.++... .- |+...+. -|.. . -.-||..-...+.++.+|+|+--|.
T Consensus 140 n~lvlP~~~~v~~~~tS~D--Vi-----Hsf~vP~----~~~k---~-daiPG~~~~~~~~~~~~G~~~g~Cs 197 (228)
T MTH00008 140 NRAVLPMQTEIRVLVTAAD--VI-----HSWTVPS----LGVK---V-DAVPGRLNQIGFTITRPGVFYGQCS 197 (228)
T ss_pred ceEEEecCCEEEEEEEeCC--cc-----ccccccc----cCcc---e-ecCCCceEEEEEEeCCCEEEEEECh
Confidence 3578889999999999854 23 5554432 1211 1 2458999999999999999998884
No 79
>PF04379 DUF525: Protein of unknown function (DUF525); InterPro: IPR007474 This domain is found in the bacterial protein ApaG and at the C termini of some F-box proteins (IPR001810 from INTERPRO). F-box proteins contain a carboxy-terminal domain that interacts with protein substrates []. The ApaG domain is ~125 amino acids in length, and is named after the bacterial ApaG protein, of which it forms the core. The Salmonella typhimurium ApaG domain protein, CorD, is involved in Co(2+) resistance and Mg(2+) efflux. Tertiary structures from different ApaG proteins show a fold of several beta-sheets. The ApaG domain may be involved in protein-protein interactions which could be implicated in substrate-specificity [, , ].; PDB: 2F1E_A 1XVS_A 1TZA_A 1XQ4_D.
Probab=65.58 E-value=12 Score=24.30 Aligned_cols=15 Identities=13% Similarity=0.264 Sum_probs=9.8
Q ss_pred eeeCCCCEEEEEEeC
Q psy16567 85 CPIPSSTTFRYKFPA 99 (127)
Q Consensus 85 ~~i~PG~~~~y~~~~ 99 (127)
..|.||++|+|.=-.
T Consensus 57 P~L~pGe~f~Y~S~~ 71 (90)
T PF04379_consen 57 PVLAPGESFEYTSGC 71 (90)
T ss_dssp -EE-TTEEEEEEEEE
T ss_pred ceECCCCcEEEcCCC
Confidence 347999988887543
No 80
>PF09394 Inhibitor_I42: Chagasin family peptidase inhibitor I42; InterPro: IPR018990 Peptide proteinase inhibitors can be found as single domain proteins or as single or multiple domains within proteins; these are referred to as either simple or compound inhibitors, respectively. In many cases they are synthesised as part of a larger precursor protein, either as a prepropeptide or as an N-terminal domain associated with an inactive peptidase or zymogen. This domain prevents access of the substrate to the active site. Removal of the N-terminal inhibitor domain either by interaction with a second peptidase or by autocatalytic cleavage activates the zymogen. Other inhibitors interact direct with proteinases using a simple noncovalent lock and key mechanism; while yet others use a conformational change-based trapping mechanism that depends on their structural and thermodynamic properties. Chagasin reversible inhibitor of papain-like cysteine proteases []. Chagasin has a beta-barrel structure, which is a unique variant of the immunoglobulin fold with homology to human CD8alpha [, ].; PDB: 2NQD_A 2NNR_A 2H7W_B 3E1Z_A 3CBK_B 3CBJ_B 2OUL_B 2FO8_A 2WGN_B 2C34_A ....
Probab=64.31 E-value=15 Score=23.09 Aligned_cols=62 Identities=19% Similarity=0.254 Sum_probs=33.1
Q ss_pred EEEecCCEEEEEEEcCCCCCceEEEEee----eeeecCCC-CCCCcccceeeeCCCCEEEEEEeCCCceee
Q psy16567 40 IQVCKGDTIIVDVKNHMIDREVTLHWHG----VYQKVTPW-MDGVPMVTQCPIPSSTTFRYKFPAMPSGTF 105 (127)
Q Consensus 40 i~v~~Gd~v~v~~~N~~~~~~~siH~HG----~~~~~~~~-~DG~~~~~~~~i~PG~~~~y~~~~~~~Gt~ 105 (127)
|.++.||++.|+|.-+.. ......+.. +......+ .+..+ ...+..+....+.|.+..+|+.
T Consensus 1 I~v~~g~~~~I~L~~nps-tGY~W~~~~~~~~l~l~~~~~~~~~~~---~~~vG~~g~~~f~f~a~~~G~~ 67 (92)
T PF09394_consen 1 ITVKVGDTFEIELPENPS-TGYSWSLSSDSDGLQLVSEEYIPDNSP---SGLVGAPGTRTFTFKALKPGTT 67 (92)
T ss_dssp -EEETTSEEEEEEEEBCC-GTBEEEECTSTTTEEEEEEEEEESSTS---STSSTSSEEEEEEEEESSSEEE
T ss_pred CeecCCCEEEEEECCCCC-CCeEEEEecCCCeEEEcCCcEEeCCCC---cCCCCCCcEEEEEEEEecCeeE
Confidence 678999999999985543 333333322 11100000 00000 0035556788899999888854
No 81
>KOG4387|consensus
Probab=63.87 E-value=5.1 Score=29.56 Aligned_cols=29 Identities=21% Similarity=0.471 Sum_probs=23.3
Q ss_pred EEEecCCEEEEEEEcCCCCCceEEEEeeee
Q psy16567 40 IQVCKGDTIIVDVKNHMIDREVTLHWHGVY 69 (127)
Q Consensus 40 i~v~~Gd~v~v~~~N~~~~~~~siH~HG~~ 69 (127)
...+-++++.+.+.|++. ...++||||+-
T Consensus 71 ~~~n~~~~~~~d~~~rlt-~~~s~~W~~vl 99 (191)
T KOG4387|consen 71 LPGNDRKPGILDFQERLT-VAKSMNWHGVL 99 (191)
T ss_pred ccccCCCCcEEeccchhh-eeeecccceEE
Confidence 344456788999999998 78999999974
No 82
>MTH00051 COX2 cytochrome c oxidase subunit II; Provisional
Probab=63.56 E-value=34 Score=25.95 Aligned_cols=58 Identities=14% Similarity=-0.003 Sum_probs=41.4
Q ss_pred CeEEEecCCEEEEEEEcCCCCCceEEEEeeeeeecCCCCCCCcccceeeeCCCCEEEEEEeCCCceeeEEccC
Q psy16567 38 PSIQVCKGDTIIVDVKNHMIDREVTLHWHGVYQKVTPWMDGVPMVTQCPIPSSTTFRYKFPAMPSGTFFYHSH 110 (127)
Q Consensus 38 P~i~v~~Gd~v~v~~~N~~~~~~~siH~HG~~~~~~~~~DG~~~~~~~~i~PG~~~~y~~~~~~~Gt~~yH~H 110 (127)
..|.+..|+.|++.++... .- |+...+. -|.. . -.-||..-...|.++.+|+|.--|.
T Consensus 144 n~lvlP~~~~v~~~itS~D--Vi-----Hsf~vp~----lg~k---~-daiPG~~~~~~~~~~~~G~y~g~Cs 201 (234)
T MTH00051 144 NRLIVPIQTQVRVLVTAAD--VL-----HSFAVPS----LSVK---I-DAVPGRLNQTSFFIKRPGVFYGQCS 201 (234)
T ss_pred eEEEEecCcEEEEEEEeCc--hh-----ccccccc----cCce---e-EccCCceEeEEEEeCCCEEEEEECh
Confidence 3588999999999999863 23 5544432 1221 1 1458999888999999999998885
No 83
>COG1188 Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog) [Translation, ribosomal structure and biogenesis]
Probab=63.21 E-value=5.7 Score=26.51 Aligned_cols=29 Identities=28% Similarity=0.391 Sum_probs=24.3
Q ss_pred EEECCCCCCCeEEEecCCEEEEEEEcCCC
Q psy16567 29 LSINRQLPGPSIQVCKGDTIIVDVKNHMI 57 (127)
Q Consensus 29 ~~~ng~~pgP~i~v~~Gd~v~v~~~N~~~ 57 (127)
..+||+.--|.=.|+.||.|+|++.|..-
T Consensus 36 V~vNG~~aKpS~~VK~GD~l~i~~~~~~~ 64 (100)
T COG1188 36 VKVNGQRAKPSKEVKVGDILTIRFGNKEF 64 (100)
T ss_pred EEECCEEcccccccCCCCEEEEEeCCcEE
Confidence 46788876788899999999999998653
No 84
>PF10989 DUF2808: Protein of unknown function (DUF2808); InterPro: IPR021256 This family of proteins with unknown function appears to be restricted to Cyanobacteria.
Probab=62.75 E-value=8.7 Score=26.88 Aligned_cols=28 Identities=21% Similarity=0.446 Sum_probs=22.0
Q ss_pred eeeeCCCCEEEEEEe-CC---CceeeEEccCC
Q psy16567 84 QCPIPSSTTFRYKFP-AM---PSGTFFYHSHV 111 (127)
Q Consensus 84 ~~~i~PG~~~~y~~~-~~---~~Gt~~yH~H~ 111 (127)
..||+||++++..+. .. ..|+|.|++-.
T Consensus 96 ~~PV~pG~tv~V~l~~v~NP~~~G~Y~f~v~a 127 (146)
T PF10989_consen 96 DEPVPPGTTVTVVLSPVRNPRSGGTYQFNVTA 127 (146)
T ss_pred CCCCCCCCEEEEEEEeeeCCCCCCeEEEEEEE
Confidence 347999999999994 32 45999999864
No 85
>TIGR01432 QOXA cytochrome aa3 quinol oxidase, subunit II. This enzyme catalyzes the oxidation of quinol with the concomitant reduction of molecular oxygen to water. This acts as the terminal electron acceptor in the respiratory chain. This subunit contains two transmembrane helices and a large external domain responsible for the binding and oxidation of quinol. QuoX is (presently) only found in gram positive bacteria of the Bacillus/Staphylococcus group. Like CyoA, the ubiquinol oxidase found in proteobacteria, the residues responsible for the ligation of Cu(a) and cytochrome c (found in the related cyt. c oxidases) are absent. Unlike CyoA, QoxA is in complex with a subunit I which contains cytochromes a similar to the cyt. c oxidases (as opposed to cytochromes b).
Probab=61.72 E-value=29 Score=25.92 Aligned_cols=58 Identities=10% Similarity=0.183 Sum_probs=41.5
Q ss_pred CeEEEecCCEEEEEEEcCCCCCceEEEEeeeeeecCCCCCCCcccceeeeCCCCEEEEEEeCCCceeeEEccC
Q psy16567 38 PSIQVCKGDTIIVDVKNHMIDREVTLHWHGVYQKVTPWMDGVPMVTQCPIPSSTTFRYKFPAMPSGTFFYHSH 110 (127)
Q Consensus 38 P~i~v~~Gd~v~v~~~N~~~~~~~siH~HG~~~~~~~~~DG~~~~~~~~i~PG~~~~y~~~~~~~Gt~~yH~H 110 (127)
..|.+..|..|++.++-.. .- |.+..+. .-+ .++ .-||..-...|.++++|+|.-.|-
T Consensus 130 n~l~iP~g~~v~~~ltS~D--Vi-----Hsf~vP~---l~~----k~d-aiPG~~~~~~~~~~~~G~y~g~Ca 187 (217)
T TIGR01432 130 NYLNIPKDRPVLFKLQSAD--TM-----TSFWIPQ---LGG----QKY-AMTGMTMNWYLQADQVGTYRGRNA 187 (217)
T ss_pred CcEEEECCCEEEEEEECCc--hh-----hhhhchh---hCc----eee-cCCCceEEEEEEeCCCEEEEEEeh
Confidence 5699999999999988653 23 4444432 111 112 358999999999999999998883
No 86
>MTH00098 COX2 cytochrome c oxidase subunit II; Validated
Probab=61.50 E-value=47 Score=25.09 Aligned_cols=59 Identities=7% Similarity=-0.014 Sum_probs=41.0
Q ss_pred CeEEEecCCEEEEEEEcCCCCCceEEEEeeeeeecCCCCCCCcccceeeeCCCCEEEEEEeCCCceeeEEccCC
Q psy16567 38 PSIQVCKGDTIIVDVKNHMIDREVTLHWHGVYQKVTPWMDGVPMVTQCPIPSSTTFRYKFPAMPSGTFFYHSHV 111 (127)
Q Consensus 38 P~i~v~~Gd~v~v~~~N~~~~~~~siH~HG~~~~~~~~~DG~~~~~~~~i~PG~~~~y~~~~~~~Gt~~yH~H~ 111 (127)
..|.+..|..|++.++-..- - |+...+. -|.. .. .-||..-...+.++++|.|+.-|.-
T Consensus 140 n~lvlP~~~~v~~~~tS~DV--i-----Hsf~ip~----lg~k---~d-aiPG~~~~~~~~~~~~G~~~g~Cse 198 (227)
T MTH00098 140 NRVVLPMEMPIRMLISSEDV--L-----HSWAVPS----LGLK---TD-AIPGRLNQTTLMSTRPGLYYGQCSE 198 (227)
T ss_pred ceEEecCCCEEEEEEEECcc--c-----ccccccc----cccc---ee-cCCCceEEEEEecCCcEEEEEECcc
Confidence 35788889999988875432 2 5555432 2221 11 4589999999999999999988853
No 87
>PTZ00047 cytochrome c oxidase subunit II; Provisional
Probab=60.92 E-value=61 Score=23.47 Aligned_cols=58 Identities=9% Similarity=0.042 Sum_probs=38.6
Q ss_pred eEEEecCCEEEEEEEcCCCCCceEEEEeeeeeecCCCCCCCcccceeeeCCCCEEEEEEeCCCceeeEEccCC
Q psy16567 39 SIQVCKGDTIIVDVKNHMIDREVTLHWHGVYQKVTPWMDGVPMVTQCPIPSSTTFRYKFPAMPSGTFFYHSHV 111 (127)
Q Consensus 39 ~i~v~~Gd~v~v~~~N~~~~~~~siH~HG~~~~~~~~~DG~~~~~~~~i~PG~~~~y~~~~~~~Gt~~yH~H~ 111 (127)
.|.+..|..|++.++-.. .- |++..+.. |. .. -+-||..-...+.++.+|+|.-.|.-
T Consensus 74 ~LvLP~g~~Vr~~lTS~D--VI-----HSF~VP~l----gv---K~-DavPGr~n~l~~~~~~~G~y~gqCsE 131 (162)
T PTZ00047 74 RLTLPTRTHIRFLITATD--VI-----HSWSVPSL----GI---KA-DAIPGRLHKINTFILREGVFYGQCSE 131 (162)
T ss_pred CEEEeCCCEEEEEEEeCc--cc-----eeeecccc----Cc---ee-eccCCceEEEEEecCCCeEEEEEcch
Confidence 477788888888776543 22 44444321 11 11 14589988889999999999999963
No 88
>cd00918 Der-p2_like Several group 2 allergen proteins belong to the ML domain family. They include Dermatophagoides pteronyssinus, group 2 (Der p 2) and D. farinae, group 2 (Der f 2) allergens. These house dust mites cause heavy atopic diseases such as asthma and dermatitis. Although the allergenic properties of these proteins have been well characterized, their biological function in mites is unknown.
Probab=59.16 E-value=54 Score=22.26 Aligned_cols=60 Identities=15% Similarity=0.267 Sum_probs=34.2
Q ss_pred CeEEEecCCEEEEEEE---cCCCCCceEEEEeee----eee-cCCCCCCCcccceeeeCCCCEEEEEEeC
Q psy16567 38 PSIQVCKGDTIIVDVK---NHMIDREVTLHWHGV----YQK-VTPWMDGVPMVTQCPIPSSTTFRYKFPA 99 (127)
Q Consensus 38 P~i~v~~Gd~v~v~~~---N~~~~~~~siH~HG~----~~~-~~~~~DG~~~~~~~~i~PG~~~~y~~~~ 99 (127)
..=.+++|+.+.+.+. |... ......+|+. ..+ .....||=. ...||+.+|+.++|.+..
T Consensus 20 ~pC~l~rG~~~~~~~~F~~~~~s-~~l~~~v~a~~~gv~iP~p~~~~daC~-~l~CPl~~G~~~~y~~~~ 87 (120)
T cd00918 20 DYCVIHRGKPLTLEAKFTANQDT-AKAKIKITASIDGLEIDVPGIETDGCK-YVKCPIKKGQHYDIKYTW 87 (120)
T ss_pred CCCEEECCCeEEEEEEEECCCcc-ceEEEEEEEEECCEEcCCCCCCCCCcc-cEeCCCcCCcEEEEEEee
Confidence 3456778887776654 2222 3345555553 222 111234321 137999999999999865
No 89
>PF00699 Urease_beta: Urease beta subunit CAUTION: The Prosite patterns do not match this subunit of the enzyme; InterPro: IPR002019 Urease 3.5.1.5 from EC is a nickel-binding enzyme that catalyzes the hydrolysis of urea to carbon dioxide and ammonia []: Urea + H2O = CO2 + 2 NH3 Historically, it was the first enzyme to be crystallized (in 1926). It is mainly found in plant seeds and microorganisms. In plants, urease is a hexamer of identical chains. In bacteria [], it consists of either two or three different subunits (alpha IPR005847 from INTERPRO, beta, described in this entry, and gamma IPR002026 from INTERPRO). The structure of the urease complex is known []. This subunit does not appear to take part in the catalytic mechanism. This subunit is known (confusingly) as alpha in Helicobacter.; GO: 0009039 urease activity, 0016151 nickel ion binding, 0006807 nitrogen compound metabolic process; PDB: 1EJS_B 1EJW_B 1A5N_B 1A5K_B 1A5M_B 1EJR_B 1EJX_B 1A5L_B 1KRB_B 1FWA_B ....
Probab=58.90 E-value=16 Score=24.37 Aligned_cols=60 Identities=22% Similarity=0.301 Sum_probs=30.1
Q ss_pred eEEEecC-CEEEEEEEcCCCCCceEE--EEeeeeeecCCCCC-----C----CcccceeeeCCCCEEEEEEeC
Q psy16567 39 SIQVCKG-DTIIVDVKNHMIDREVTL--HWHGVYQKVTPWMD-----G----VPMVTQCPIPSSTTFRYKFPA 99 (127)
Q Consensus 39 ~i~v~~G-d~v~v~~~N~~~~~~~si--H~HG~~~~~~~~~D-----G----~~~~~~~~i~PG~~~~y~~~~ 99 (127)
.|.+++| ++++|++.|..+ .+.-+ |+|=.........| | .|.-+..-.+||++++.++..
T Consensus 11 ~I~lN~gr~~~~l~V~N~GD-RPIQVGSH~HF~E~N~aL~FDR~~A~G~RLdIPaGTavRFEPG~~k~V~LV~ 82 (100)
T PF00699_consen 11 DIELNAGRERITLEVTNTGD-RPIQVGSHYHFFEVNPALEFDREAAYGMRLDIPAGTAVRFEPGDTKEVELVP 82 (100)
T ss_dssp EEETTTTSEEEEEEEEE-SS-S-EEEETTS-GGGS-TTEES-HHHHTTEEE-SSTT-EEEE-TT-EEEEEEEE
T ss_pred cEEecCCCcEEEEEEEeCCC-cceEEccccCHHHHhHHhhhhHHHhCCcccCcCCCCeEEECCCCcEEEEEEE
Confidence 3667777 478899999998 77665 44433221111111 1 011122236899999998874
No 90
>TIGR01433 CyoA cytochrome o ubiquinol oxidase subunit II. This enzyme catalyzes the oxidation of ubiquinol with the concomitant reduction of molecular oxygen to water. This acts as the terminal electron acceptor in the respiratory chain. Subunit II is responsible for binding and oxidation of the ubiquinone substrate. This sequence is closely related to QoxA, which oxidizes quinol in gram positive bacteria but which is in complex with subunits which utilize cytochromes a in the reduction of molecular oxygen. Slightly more distantly related is subunit II of cytochrome c oxidase which uses cyt. c as the oxidant.
Probab=58.55 E-value=36 Score=25.73 Aligned_cols=72 Identities=8% Similarity=-0.031 Sum_probs=46.8
Q ss_pred CeEEEecCCEEEEEEEcCCCCCceEEEEeeeeeecCCCCCCCcccceeeeCCCCEEEEEEeCCCceeeEEccCC-----C
Q psy16567 38 PSIQVCKGDTIIVDVKNHMIDREVTLHWHGVYQKVTPWMDGVPMVTQCPIPSSTTFRYKFPAMPSGTFFYHSHV-----D 112 (127)
Q Consensus 38 P~i~v~~Gd~v~v~~~N~~~~~~~siH~HG~~~~~~~~~DG~~~~~~~~i~PG~~~~y~~~~~~~Gt~~yH~H~-----~ 112 (127)
..|++..|..|+++++=.. .- |++..+.. - ..+. .-||..-...|.++++|+|.-.|-- .
T Consensus 139 nel~lP~g~pV~~~ltS~D--Vi-----HSF~VP~l---~----~K~D-aiPG~~n~~~~~~~~~G~y~g~CaE~CG~~H 203 (226)
T TIGR01433 139 NEIAFPVNTPINFKITSNS--VM-----NSFFIPQL---G----SQIY-AMAGMQTKLHLIANEPGVYDGISANYSGPGF 203 (226)
T ss_pred ceEEEECCCEEEEEEEECc--hh-----hhhhhhhc---C----Ceee-cCCCceEEEEEEeCCCEEEEEEchhhcCcCc
Confidence 5699999999999987653 23 44433321 1 1111 4589999999999999999988842 2
Q ss_pred CCceeeEEEEcC
Q psy16567 113 RRPYCPEIEEKK 124 (127)
Q Consensus 113 ~~~~g~liV~d~ 124 (127)
..+..-++|.++
T Consensus 204 a~M~~~V~v~~~ 215 (226)
T TIGR01433 204 SGMKFKAIATDR 215 (226)
T ss_pred cCCeEEEEEECH
Confidence 233555555443
No 91
>MTH00129 COX2 cytochrome c oxidase subunit II; Provisional
Probab=57.06 E-value=58 Score=24.64 Aligned_cols=58 Identities=19% Similarity=0.065 Sum_probs=40.7
Q ss_pred eEEEecCCEEEEEEEcCCCCCceEEEEeeeeeecCCCCCCCcccceeeeCCCCEEEEEEeCCCceeeEEccCC
Q psy16567 39 SIQVCKGDTIIVDVKNHMIDREVTLHWHGVYQKVTPWMDGVPMVTQCPIPSSTTFRYKFPAMPSGTFFYHSHV 111 (127)
Q Consensus 39 ~i~v~~Gd~v~v~~~N~~~~~~~siH~HG~~~~~~~~~DG~~~~~~~~i~PG~~~~y~~~~~~~Gt~~yH~H~ 111 (127)
.+.+..|..|++.++=.. .- |+...+. -|.. . -.-||..-...|.++.+|+|+-.|.-
T Consensus 141 ~lvlP~~~~v~~~~tS~D--Vi-----Hsf~ip~----~~~k---~-da~PG~~~~~~~~~~~~G~~~g~C~e 198 (230)
T MTH00129 141 RMVVPVESPIRVLVSAED--VL-----HSWAVPA----LGVK---M-DAVPGRLNQTAFIASRPGVFYGQCSE 198 (230)
T ss_pred eEEEecCcEEEEEEEeCc--cc-----cceeccc----cCCc---c-ccCCCceEEEEEEeCCceEEEEEChh
Confidence 578888999998887543 12 5555432 1221 1 24689999999999999999998853
No 92
>PRK13192 bifunctional urease subunit gamma/beta; Reviewed
Probab=56.51 E-value=48 Score=24.94 Aligned_cols=59 Identities=22% Similarity=0.314 Sum_probs=36.0
Q ss_pred EEEecC-CEEEEEEEcCCCCCceEE--EEeeeeeecCCCCC-----C----CcccceeeeCCCCEEEEEEeC
Q psy16567 40 IQVCKG-DTIIVDVKNHMIDREVTL--HWHGVYQKVTPWMD-----G----VPMVTQCPIPSSTTFRYKFPA 99 (127)
Q Consensus 40 i~v~~G-d~v~v~~~N~~~~~~~si--H~HG~~~~~~~~~D-----G----~~~~~~~~i~PG~~~~y~~~~ 99 (127)
|.++.| +++.+.++|..+ .+.-+ |+|=+........| | .|.-+..-.+||++++..+..
T Consensus 122 I~lN~gr~~~~l~V~NtGD-RPIQVGSHyHF~E~N~aL~FDR~~A~G~RLdIpAGTavRFEPG~~k~V~LV~ 192 (208)
T PRK13192 122 IELNAGRPAVTLDVTNTGD-RPIQVGSHFHFFEVNRALRFDRAAAYGMRLDIPAGTAVRFEPGETKEVRLVP 192 (208)
T ss_pred eeeCCCCCEEEEEEEeCCC-CceeeccccchhhcCchhhccHHHhcCcccccCCCCeEeECCCCeeEEEEEE
Confidence 777787 789999999998 76555 55543332211111 1 111122236899999998874
No 93
>PF00927 Transglut_C: Transglutaminase family, C-terminal ig like domain; InterPro: IPR008958 Synonym(s): Protein-glutamine gamma-glutamyltransferase, Fibrinoligase, TGase Transglutaminases catalyse the post-translational modification of proteins at glutamine residues, with formation of isopeptide bonds. Members of the transglutaminase family usually have three domains: N-terminal (IPR001102 from INTERPRO), middle (IPR013808 from INTERPRO) and C-terminal. The middle domain is usually well conserved, but family members can display major differences in their N- and C-terminal domains, although their overall structure is conserved []. This entry represents the C-terminal domain found in transglutaminases, which consists of an immunoglobulin-like beta-sandwich consisting of seven strands in two sheets with a Greek key topology. The best known transglutaminase is blood coagulation factor XIII, a plasma tetrameric protein composed of two catalytic A subunits and two non-catalytic B subunits. Factor XIII is responsible for cross-linking fibrin chains, thus stabilising the fibrin clot. Protein-glutamine gamma-glutamyltransferases (2.3.2.13 from EC) are calcium-dependent enzymes that catalyse the cross-linking of proteins by promoting the formation of isopeptide bonds between the gamma-carboxyl group of a glutamine in one polypeptide chain and the epsilon-amino group of a lysine in a second polypeptide chain. TGases also catalyse the conjugation of polyamines to proteins [, ].; GO: 0003810 protein-glutamine gamma-glutamyltransferase activity, 0018149 peptide cross-linking; PDB: 2XZZ_A 1GGY_B 1FIE_B 1GGU_B 1GGT_B 1F13_A 1QRK_B 1EVU_A 1EX0_B 1L9N_B ....
Probab=54.68 E-value=22 Score=23.05 Aligned_cols=56 Identities=14% Similarity=0.146 Sum_probs=30.3
Q ss_pred cCC--EEEEEEEcCCCCCc-e--EEEEeeeeeecCCCCCCCcc------cceeeeCCCCEEEEEEeCC--Ccee
Q psy16567 44 KGD--TIIVDVKNHMIDRE-V--TLHWHGVYQKVTPWMDGVPM------VTQCPIPSSTTFRYKFPAM--PSGT 104 (127)
Q Consensus 44 ~Gd--~v~v~~~N~~~~~~-~--siH~HG~~~~~~~~~DG~~~------~~~~~i~PG~~~~y~~~~~--~~Gt 104 (127)
.|+ .+.++|.|.++ .. . ++++...... ..|... .....|.||++.++.+.+. +.|.
T Consensus 13 vG~d~~v~v~~~N~~~-~~l~~v~~~l~~~~v~----ytG~~~~~~~~~~~~~~l~p~~~~~~~~~i~p~~yG~ 81 (107)
T PF00927_consen 13 VGQDFTVSVSFTNPSS-EPLRNVSLNLCAFTVE----YTGLTRDQFKKEKFEVTLKPGETKSVEVTITPSQYGP 81 (107)
T ss_dssp TTSEEEEEEEEEE-SS-S-EECEEEEEEEEEEE----CTTTEEEEEEEEEEEEEE-TTEEEEEEEEE-HHSHEE
T ss_pred CCCCEEEEEEEEeCCc-CccccceeEEEEEEEE----ECCcccccEeEEEcceeeCCCCEEEEEEEEEceeEec
Confidence 355 56688899988 44 3 3344333322 223321 1233589999999999873 5665
No 94
>MTH00023 COX2 cytochrome c oxidase subunit II; Validated
Probab=52.34 E-value=72 Score=24.28 Aligned_cols=58 Identities=9% Similarity=-0.051 Sum_probs=39.8
Q ss_pred CeEEEecCCEEEEEEEcCCCCCceEEEEeeeeeecCCCCCCCcccceeeeCCCCEEEEEEeCCCceeeEEccC
Q psy16567 38 PSIQVCKGDTIIVDVKNHMIDREVTLHWHGVYQKVTPWMDGVPMVTQCPIPSSTTFRYKFPAMPSGTFFYHSH 110 (127)
Q Consensus 38 P~i~v~~Gd~v~v~~~N~~~~~~~siH~HG~~~~~~~~~DG~~~~~~~~i~PG~~~~y~~~~~~~Gt~~yH~H 110 (127)
..|.+..|..|++.++=.. .-|++..-.+.. ... .-||..-...|.++++|.|.-.|.
T Consensus 151 n~lvlP~~~~v~~~~tS~D--ViHsf~iP~lgv------------K~D-aiPG~~n~~~~~~~~~G~y~g~C~ 208 (240)
T MTH00023 151 NRLVVPINTHVRILVTGAD--VLHSFAVPSLGL------------KID-AVPGRLNQTGFFIKRPGVFYGQCS 208 (240)
T ss_pred ceEEEecCCEEEEEEEcCC--cccceeecccCc------------eee-cCCCcceeEEEEcCCCEEEEEEch
Confidence 3588889999999887543 334433322211 111 358998889999999999999885
No 95
>MTH00038 COX2 cytochrome c oxidase subunit II; Provisional
Probab=51.94 E-value=68 Score=24.22 Aligned_cols=58 Identities=16% Similarity=0.032 Sum_probs=39.2
Q ss_pred CeEEEecCCEEEEEEEcCCCCCceEEEEeeeeeecCCCCCCCcccceeeeCCCCEEEEEEeCCCceeeEEccC
Q psy16567 38 PSIQVCKGDTIIVDVKNHMIDREVTLHWHGVYQKVTPWMDGVPMVTQCPIPSSTTFRYKFPAMPSGTFFYHSH 110 (127)
Q Consensus 38 P~i~v~~Gd~v~v~~~N~~~~~~~siH~HG~~~~~~~~~DG~~~~~~~~i~PG~~~~y~~~~~~~Gt~~yH~H 110 (127)
..+.+..|..+++.++-.. .- |+...+.. |. ... .-||..-...+.++++|+|.--|.
T Consensus 140 n~lvlP~~~~v~~~~tS~D--Vi-----Hsf~iP~l----g~---k~d-aiPG~~~~~~~~~~~~G~~~g~Cs 197 (229)
T MTH00038 140 NRLVLPYQTPIRVLVSSAD--VL-----HSWAVPSL----GV---KMD-AVPGRLNQTTFFISRTGLFYGQCS 197 (229)
T ss_pred ceEEEecCeEEEEEEEECC--cc-----cccccccc----Cc---eee-cCCCceEEEEEEcCCCEEEEEEcc
Confidence 3578888888888876543 23 44433321 11 111 358999999999999999999884
No 96
>PRK13986 urease subunit alpha; Provisional
Probab=50.49 E-value=62 Score=24.64 Aligned_cols=59 Identities=22% Similarity=0.206 Sum_probs=35.9
Q ss_pred EEEecC-CEEEEEEEcCCCCCceEE--EEeeeeeecCCCCC-----C----CcccceeeeCCCCEEEEEEeC
Q psy16567 40 IQVCKG-DTIIVDVKNHMIDREVTL--HWHGVYQKVTPWMD-----G----VPMVTQCPIPSSTTFRYKFPA 99 (127)
Q Consensus 40 i~v~~G-d~v~v~~~N~~~~~~~si--H~HG~~~~~~~~~D-----G----~~~~~~~~i~PG~~~~y~~~~ 99 (127)
|.++.| +++.+.++|..+ .+.-+ |+|=+........| | .|.-+..-.+||++++..+..
T Consensus 118 I~lN~gr~~~~l~V~NtGD-RPIQVGSHyHF~E~N~aL~FDR~~A~G~RLdIpAGTavRFEPG~~k~V~LV~ 188 (225)
T PRK13986 118 ITINAGKKAVSVKVKNVGD-RPVQVGSHFHFFEVNRCLEFDREKAFGKRLDIASGTAVRFEPGEEKSVELID 188 (225)
T ss_pred eecCCCCcEEEEEEEeCCC-CceeeccccchhhcCchhhccHHHhcCcccccCCCCeEeECCCCeeEEEEEE
Confidence 677777 789999999998 66554 55543332211111 1 111122236899999998874
No 97
>cd05468 pVHL von Hippel-Landau (pVHL) tumor suppressor protein. von Hippel-Landau (pVHL) protein, the gene product of VHL, is a critical regulator of the ubiquitous oxygen-sensing pathway. It is conserved throughout evolution, as its homologs are found in organisms ranging from mammals to the Drosophila melanogaster, Anopheles gambiae insects and the Caenorhabditis elegans nematode. pVHL acts as the substrate recognition component of an E3 ubiquitin ligase complex. Several proteins have been identified as pVHL-binding proteins that are subject to ubiquitin-mediated proteolysis; the best characterized putative substrates are the alpha subunits of the hypoxia-inducible factor (HIF1alpha, HIF2alpha, and HIF3alpha). In addition to HIF degradation, pVHL has been implicated to be involved in HIF independent cellular processes. Germline VHL mutations cause renal cell carcinomas, hemangioblastomas and pheochromocytomas in humans. pVHL can bind to and direct the proper deposition of fibronecti
Probab=50.27 E-value=59 Score=22.67 Aligned_cols=41 Identities=29% Similarity=0.373 Sum_probs=28.2
Q ss_pred cCCEEEEEEEcCCCCCceEEEEeeeeeecCCCCCCCcccceeeeCCCCEEE
Q psy16567 44 KGDTIIVDVKNHMIDREVTLHWHGVYQKVTPWMDGVPMVTQCPIPSSTTFR 94 (127)
Q Consensus 44 ~Gd~v~v~~~N~~~~~~~siH~HG~~~~~~~~~DG~~~~~~~~i~PG~~~~ 94 (127)
.+..+.|+|.|..+ .+.-+.|-. .+|.. .....+.||+++.
T Consensus 5 s~~~~~v~F~N~t~-~~v~~~Wid--------~~G~~-~~Y~~l~pg~~~~ 45 (141)
T cd05468 5 SRVPSTVRFVNRTD-RPVELYWID--------YDGKP-VSYGTLQPGETVR 45 (141)
T ss_pred CCceEEEEEEeCCC-CeEEEEEEC--------CCCCE-EEeeeeCCCCEEe
Confidence 46788999999998 777777732 23332 3444688998864
No 98
>PF04151 PPC: Bacterial pre-peptidase C-terminal domain; InterPro: IPR007280 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. This domain is normally found at the C terminus of secreted archaeal and bacterial peptidases, the majority of which belong to MEROPS peptidase families M4 (vibriolysin, IPR001570 from INTERPRO), M9A amd M9B (microbial collangenase, IPR002169 from INTERPRO), M28 (aminopeptidase Ap1, IPR007484 from INTERPRO) and S8 (subtilisin family peptidases, IPR000209 from INTERPRO).; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 4DY5_B 4DXZ_A 4DY3_B 3JQW_A 3JQX_C 1NQJ_B 1NQD_A 2O8O_A 1WMF_A 1WME_A ....
Probab=50.00 E-value=53 Score=19.46 Aligned_cols=58 Identities=17% Similarity=0.294 Sum_probs=32.6
Q ss_pred EEEecCCEEEEEEEcCCCCCceEEEEeeeeeecCCCCCCCcccc--eeeeCCCCEEEEEEeCCCceeeEE
Q psy16567 40 IQVCKGDTIIVDVKNHMIDREVTLHWHGVYQKVTPWMDGVPMVT--QCPIPSSTTFRYKFPAMPSGTFFY 107 (127)
Q Consensus 40 i~v~~Gd~v~v~~~N~~~~~~~siH~HG~~~~~~~~~DG~~~~~--~~~i~PG~~~~y~~~~~~~Gt~~y 107 (127)
+.++.|++|+|.+.+... ...|.+..- +|..... ...-..+..-...|.+.++|||..
T Consensus 7 f~v~ag~~l~i~l~~~~~--d~dl~l~~~--------~g~~~~~~d~~~~~~~~~~~i~~~~~~~GtYyi 66 (70)
T PF04151_consen 7 FTVPAGGTLTIDLSGGSG--DADLYLYDS--------NGNSLASYDDSSQSGGNDESITFTAPAAGTYYI 66 (70)
T ss_dssp EEESTTEEEEEEECETTS--SEEEEEEET--------TSSSCEECCCCTCETTSEEEEEEEESSSEEEEE
T ss_pred EEEcCCCEEEEEEcCCCC--CeEEEEEcC--------CCCchhhheecCCCCCCccEEEEEcCCCEEEEE
Confidence 678899999999988763 233443222 2211110 001112444566778889999863
No 99
>PF14646 MYCBPAP: MYCBP-associated protein family
Probab=48.13 E-value=74 Score=26.15 Aligned_cols=64 Identities=14% Similarity=0.156 Sum_probs=37.3
Q ss_pred EEEecCCEEE---EEEEcCCCCCceEEEEeeeeeecCC----CCCCCcc---cceeeeCCCCEEEEEEeC--CCcee
Q psy16567 40 IQVCKGDTII---VDVKNHMIDREVTLHWHGVYQKVTP----WMDGVPM---VTQCPIPSSTTFRYKFPA--MPSGT 104 (127)
Q Consensus 40 i~v~~Gd~v~---v~~~N~~~~~~~siH~HG~~~~~~~----~~DG~~~---~~~~~i~PG~~~~y~~~~--~~~Gt 104 (127)
+....|+++. ++|.|.+. .....+|.=....... ......+ .....|.||++..+.|.. ..+|.
T Consensus 241 Fe~~p~e~~~~~v~~l~N~Gt-~~I~y~W~~~~~~~~~~~~~~~~~~~F~Fd~~~gvilPGe~~~~~~~F~s~~~Gi 316 (426)
T PF14646_consen 241 FECHPGERVSKEVVRLENNGT-TAIYYSWRRVPFFKNFGSLFRAQDQRFYFDTSSGVILPGETRNFPFMFKSRKVGI 316 (426)
T ss_pred EEcccCceeeEEEEEEecCCc-eEEEEEEEecccccccchhccccCCeEEEeCCCCEECCCceEEEEEEEeCCCceE
Confidence 4555677654 44889988 6777777665542100 0000000 123358999999888776 56773
No 100
>PF07731 Cu-oxidase_2: Multicopper oxidase; InterPro: IPR011706 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 2 domains.; GO: 0005507 copper ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3GDC_C 3ZX1_A 2YAH_A 2YAR_A 2YAQ_A 2YAO_A 2YAM_A 2YAF_A 2YAP_A 2XU9_A ....
Probab=47.62 E-value=82 Score=20.93 Aligned_cols=57 Identities=11% Similarity=0.027 Sum_probs=44.5
Q ss_pred cCcceEeecCCceEEEEEECCCCC---------------CCeEEEecCCEEEEEEEcCCCCCceEEEEeeeee
Q psy16567 13 CRRKGCVTADGFERAILSINRQLP---------------GPSIQVCKGDTIIVDVKNHMIDREVTLHWHGVYQ 70 (127)
Q Consensus 13 ~~~~~~v~~~G~~~~~~~~ng~~p---------------gP~i~v~~Gd~v~v~~~N~~~~~~~siH~HG~~~ 70 (127)
......+.+-|....+...++... -.++.+..|..++|++.=.-+ -...+|.|-+..
T Consensus 52 ~~~~Hp~HlHG~~F~vl~~~~~~~~~~~~~~~~~~~~~~~DTv~v~~~~~~~i~~~~~~~-G~w~~HCHi~~H 123 (138)
T PF07731_consen 52 GSMPHPFHLHGHSFQVLGRGGGPWNPDDTQSYNPENPGWRDTVLVPPGGWVVIRFRADNP-GPWLFHCHILEH 123 (138)
T ss_dssp TTSSEEEEETTSEEEEEEETTEESTTHCGGCCCSSSSSEESEEEEETTEEEEEEEEETST-EEEEEEESSHHH
T ss_pred CCCccceEEEeeEEEeeecCCcccccccccccccccCcccccccccceeEEEEEEEeecc-eEEEEEEchHHH
Confidence 445778888888888888877543 367999999999999987655 678999998754
No 101
>MTH00139 COX2 cytochrome c oxidase subunit II; Provisional
Probab=46.63 E-value=1.2e+02 Score=22.69 Aligned_cols=58 Identities=10% Similarity=-0.039 Sum_probs=39.0
Q ss_pred CeEEEecCCEEEEEEEcCCCCCceEEEEeeeeeecCCCCCCCcccceeeeCCCCEEEEEEeCCCceeeEEccC
Q psy16567 38 PSIQVCKGDTIIVDVKNHMIDREVTLHWHGVYQKVTPWMDGVPMVTQCPIPSSTTFRYKFPAMPSGTFFYHSH 110 (127)
Q Consensus 38 P~i~v~~Gd~v~v~~~N~~~~~~~siH~HG~~~~~~~~~DG~~~~~~~~i~PG~~~~y~~~~~~~Gt~~yH~H 110 (127)
..|.+..|..|++.++-.. .-|+ ...+.. |. ... .-||..-...|.++++|+|.--|-
T Consensus 140 n~l~lP~~~~v~~~~tS~D--ViHs-----f~vP~l----~~---K~D-aiPG~~n~~~~~~~~~G~y~g~Cs 197 (226)
T MTH00139 140 NRLVLPYKSNIRALITAAD--VLHS-----WTVPSL----GV---KID-AVPGRLNQVGFFINRPGVFYGQCS 197 (226)
T ss_pred ceEEEecCCEEEEEEecCc--cccc-----eecccc----Cc---ccc-CCCCcEEEEEEEcCCCEEEEEECh
Confidence 4588888999998876543 3333 333221 11 111 348999999999999999988884
No 102
>MTH00168 COX2 cytochrome c oxidase subunit II; Provisional
Probab=45.72 E-value=1e+02 Score=23.14 Aligned_cols=59 Identities=14% Similarity=0.063 Sum_probs=40.2
Q ss_pred CeEEEecCCEEEEEEEcCCCCCceEEEEeeeeeecCCCCCCCcccceeeeCCCCEEEEEEeCCCceeeEEccCC
Q psy16567 38 PSIQVCKGDTIIVDVKNHMIDREVTLHWHGVYQKVTPWMDGVPMVTQCPIPSSTTFRYKFPAMPSGTFFYHSHV 111 (127)
Q Consensus 38 P~i~v~~Gd~v~v~~~N~~~~~~~siH~HG~~~~~~~~~DG~~~~~~~~i~PG~~~~y~~~~~~~Gt~~yH~H~ 111 (127)
..+.+..|..|++.++-.. .- |+...+.. |. ... .-||..-...+.++++|+|.--|.-
T Consensus 140 n~l~lP~~~~v~~~~tS~D--Vi-----Hsf~vP~l----g~---k~d-aiPG~~n~~~~~~~~~G~~~g~CsE 198 (225)
T MTH00168 140 NRLVLPMDSKIRVLVTSAD--VL-----HSWTLPSL----GL---KMD-AVPGRLNQLAFLSSRPGSFYGQCSE 198 (225)
T ss_pred ceEEEecCCEEEEEEEeCC--hh-----hccccccc----cc---ccc-CCCCeEEEEEEEcCCCEEEEEEccc
Confidence 4588888999998887653 23 44443321 11 111 3589999999999999999988853
No 103
>cd00916 Npc2_like Niemann-Pick type C2 (Npc2) is a lysosomal protein in which a mutation in the gene causes a rare form of Niemann-Pick type C disease, an autosomal recessive lipid storage disorder characterized by accumulation of low-density lipoprotein-derived cholesterol in lysosomes. Although Npc2 is known to bind cholesterol, the function of this protein is unknown. These proteins belong to the ML domain family.
Probab=45.10 E-value=94 Score=20.91 Aligned_cols=61 Identities=18% Similarity=0.271 Sum_probs=32.2
Q ss_pred eEEEecCCEEEEEEEcCCC--CCceEEEEe----eeeeecCC-CCCCCccc-ceeeeCCCCEEEEEEeC
Q psy16567 39 SIQVCKGDTIIVDVKNHMI--DREVTLHWH----GVYQKVTP-WMDGVPMV-TQCPIPSSTTFRYKFPA 99 (127)
Q Consensus 39 ~i~v~~Gd~v~v~~~N~~~--~~~~siH~H----G~~~~~~~-~~DG~~~~-~~~~i~PG~~~~y~~~~ 99 (127)
.=.+++|+.+.+.+.=... ........| |+..+... ..|+=... ..||+.+|+.++|.+..
T Consensus 23 PC~l~rG~~~~~~i~F~~~~~~~~~~~~v~~~~~gv~ip~~~~~~daC~~~~~~CPl~~G~~~~y~~~~ 91 (123)
T cd00916 23 PCKLKRGSTAKVSIDFTPNFDSTSLKTEVHAILLGVPVPFPLPNPDACKNLGTSCPLSAGEDVTYTLSL 91 (123)
T ss_pred CCEEECCCEEEEEEEEEcCcccceeEEEEEEEECCEEecCCCCCCccccCCCCCCCCcCCcEEEEEEee
Confidence 4456778877766552211 122233333 33332111 13331111 57999999999999965
No 104
>TIGR03396 PC_PLC phospholipase C, phosphocholine-specific, Pseudomonas-type. Members of this protein family are bacterial, phosphatidylcholine-hydrolyzing phospholipase C enzymes, with a characteristic domain architecture as found in hemolytyic (PlcH) and nonhemolytic (PlcN) secreted enzymes of Pseudomonas aeruginosa. PlcH hydrolyzes phosphatidylcholine to diacylglycerol and phosphocholine, but unlike PlcN can also hydrolyze sphingomyelin to ceramide ((N-acylsphingosine)) and phosphocholine. Members of this family share the twin-arginine signal sequence for Sec-independent transport across the plasma membrane. PlcH is secreted as a heterodimer with a small chaperone, PlcR, encoded immediately downstream.
Probab=45.02 E-value=2.3e+02 Score=25.29 Aligned_cols=57 Identities=12% Similarity=0.181 Sum_probs=36.4
Q ss_pred CCeEEEec---CCEEEEEEEcCCCCCceEEEEeeeeeecCCCCCCCcccceeeeCCCCEEEEEEeCCC
Q psy16567 37 GPSIQVCK---GDTIIVDVKNHMIDREVTLHWHGVYQKVTPWMDGVPMVTQCPIPSSTTFRYKFPAMP 101 (127)
Q Consensus 37 gP~i~v~~---Gd~v~v~~~N~~~~~~~siH~HG~~~~~~~~~DG~~~~~~~~i~PG~~~~y~~~~~~ 101 (127)
.|.++++. ...|+|+|.|... ....+|+.--.+ .++.+ ....|.+|++.+..|.+..
T Consensus 593 ~~~~~~~~d~a~G~L~L~L~N~G~-~a~~ftV~d~~Y-----~~~~p--r~ytV~aG~~~~~~w~l~~ 652 (690)
T TIGR03396 593 VPEVRVCYDVANGNLYLTLSNAGR-SPVTVTVTDNAY-----GGAGP--RTVTVAPGQRVELHWDLSA 652 (690)
T ss_pred CCceEEEEecCCCEEEEEEEeCCC-CcEEEEEEeCCC-----CCCCC--EEEEECCCCEEEEEEeccC
Confidence 35566644 4569999999987 677776653221 11112 1245889999988887643
No 105
>COG2967 ApaG Uncharacterized protein affecting Mg2+/Co2+ transport [Inorganic ion transport and metabolism]
Probab=44.90 E-value=51 Score=22.81 Aligned_cols=51 Identities=14% Similarity=0.062 Sum_probs=27.4
Q ss_pred EEEEEEcCCCC--CceEEEEeeeeeecCC---CCCCCcccceeeeCCCCEEEEEEeC
Q psy16567 48 IIVDVKNHMID--REVTLHWHGVYQKVTP---WMDGVPMVTQCPIPSSTTFRYKFPA 99 (127)
Q Consensus 48 v~v~~~N~~~~--~~~siH~HG~~~~~~~---~~DG~~~~~~~~i~PG~~~~y~~~~ 99 (127)
..|++.|+... ...+=|||=.+..+.- .-+|+- --|..+.||++++|.--+
T Consensus 32 YtitI~N~g~~~vqLlsR~W~ITd~~g~v~eV~G~GVV-GeQP~l~PG~~y~YtSg~ 87 (126)
T COG2967 32 YTVTIRNLGEVPVQLLSRYWLITDGNGRVTEVEGEGVV-GEQPLLAPGEEYQYTSGC 87 (126)
T ss_pred EEEEEecCCCccceeeeeEEEEecCCCcEEEEEcCcee-ccccccCCCCceEEcCCc
Confidence 35778888762 2234477643321100 012221 125568999999997644
No 106
>PF00386 C1q: C1q domain; InterPro: IPR001073 This entry represents the C-terminal domain of C1q. C1q is a subunit of the C1 enzyme complex that activates the serum complement system. C1q comprises 6 A, 6 B and 6 C chains. These share the same topology, each possessing a small, globular N-terminal domain, a collagen-like Gly/Pro-rich central region, and a conserved C-terminal region, the C1q domain []. The C1q protein is produced in collagen-producing cells and shows sequence and structural similarity to collagens VIII and X [, ]. This domain is also found in multimerin and EMILIN proteins.; PDB: 1O91_C 2JG8_D 2JG9_A 2WNV_A 2WNU_A 1PK6_A 4DOU_A 1C3H_C 1C28_C 2OII_A ....
Probab=44.67 E-value=26 Score=23.30 Aligned_cols=17 Identities=35% Similarity=0.577 Sum_probs=12.8
Q ss_pred CeEEEecCCEEEEEEEc
Q psy16567 38 PSIQVCKGDTIIVDVKN 54 (127)
Q Consensus 38 P~i~v~~Gd~v~v~~~N 54 (127)
-++.+++||+|.|++..
T Consensus 91 ~vl~L~~GD~V~v~~~~ 107 (127)
T PF00386_consen 91 AVLQLNKGDTVWVRLDS 107 (127)
T ss_dssp EEEEE-TT-EEEEEEEE
T ss_pred EEEEeCCCCEEEEEEec
Confidence 45899999999999885
No 107
>PRK05659 sulfur carrier protein ThiS; Validated
Probab=42.57 E-value=29 Score=20.44 Aligned_cols=25 Identities=16% Similarity=0.304 Sum_probs=18.6
Q ss_pred EEEEECCCCCC----CeEEEecCCEEEEE
Q psy16567 27 AILSINRQLPG----PSIQVCKGDTIIVD 51 (127)
Q Consensus 27 ~~~~~ng~~pg----P~i~v~~Gd~v~v~ 51 (127)
-+..+||.+-. +...++.||+|+|-
T Consensus 32 vav~vNg~iv~r~~~~~~~l~~gD~vei~ 60 (66)
T PRK05659 32 VAVEVNGEIVPRSQHASTALREGDVVEIV 60 (66)
T ss_pred EEEEECCeEeCHHHcCcccCCCCCEEEEE
Confidence 34568887554 77889999999873
No 108
>PF14453 ThiS-like: ThiS-like ubiquitin
Probab=42.05 E-value=30 Score=20.63 Aligned_cols=27 Identities=19% Similarity=0.307 Sum_probs=20.2
Q ss_pred eEEEEEECCCCCCCeEEEecCCEEEEE
Q psy16567 25 ERAILSINRQLPGPSIQVCKGDTIIVD 51 (127)
Q Consensus 25 ~~~~~~~ng~~pgP~i~v~~Gd~v~v~ 51 (127)
...+|.+||=.--.-+.+++||+|.+-
T Consensus 28 ~~DI~I~NGF~~~~d~~L~e~D~v~~I 54 (57)
T PF14453_consen 28 DADIVILNGFPTKEDIELKEGDEVFLI 54 (57)
T ss_pred CCCEEEEcCcccCCccccCCCCEEEEE
Confidence 456899999433466999999998753
No 109
>MTH00154 COX2 cytochrome c oxidase subunit II; Provisional
Probab=41.67 E-value=1.2e+02 Score=22.89 Aligned_cols=58 Identities=14% Similarity=0.056 Sum_probs=39.5
Q ss_pred CeEEEecCCEEEEEEEcCCCCCceEEEEeeeeeecCCCCCCCcccceeeeCCCCEEEEEEeCCCceeeEEccC
Q psy16567 38 PSIQVCKGDTIIVDVKNHMIDREVTLHWHGVYQKVTPWMDGVPMVTQCPIPSSTTFRYKFPAMPSGTFFYHSH 110 (127)
Q Consensus 38 P~i~v~~Gd~v~v~~~N~~~~~~~siH~HG~~~~~~~~~DG~~~~~~~~i~PG~~~~y~~~~~~~Gt~~yH~H 110 (127)
..|.+..|..|++.++-.. .- |+...+.. |. ... .-||..-...+.++++|+|.--|.
T Consensus 140 n~l~lP~~~~v~~~~tS~D--Vi-----Hsf~vp~l----~~---k~d-avPG~~~~~~~~~~~~G~y~g~Cs 197 (227)
T MTH00154 140 NRLVLPMNTQIRILITAAD--VI-----HSWTVPSL----GV---KVD-AVPGRLNQLNFLINRPGLFFGQCS 197 (227)
T ss_pred ceEEEecCCEEEEEEEcCc--hh-----hheecccc----CC---eee-cCCCceEEEEEEEcCceEEEEEee
Confidence 4588889999998876542 22 44444321 11 111 458999999999999999988884
No 110
>COG0361 InfA Translation initiation factor 1 (IF-1) [Translation, ribosomal structure and biogenesis]
Probab=40.55 E-value=89 Score=19.70 Aligned_cols=30 Identities=20% Similarity=0.352 Sum_probs=19.2
Q ss_pred ceEEEEEECCC-----CCCC----eEEEecCCEEEEEEE
Q psy16567 24 FERAILSINRQ-----LPGP----SIQVCKGDTIIVDVK 53 (127)
Q Consensus 24 ~~~~~~~~ng~-----~pgP----~i~v~~Gd~v~v~~~ 53 (127)
...++..-||. +||- -|+..+||.|.|.+.
T Consensus 20 ~~f~v~~edg~~~~ahI~GKmr~~~i~I~~GD~V~Ve~~ 58 (75)
T COG0361 20 GRFRVELENGHERLAHISGKMRKNRIRILPGDVVLVELS 58 (75)
T ss_pred CEEEEEecCCcEEEEEccCcchheeEEeCCCCEEEEEec
Confidence 44555565654 5663 377888888887654
No 111
>MTH00185 COX2 cytochrome c oxidase subunit II; Provisional
Probab=39.95 E-value=1.6e+02 Score=22.21 Aligned_cols=59 Identities=14% Similarity=0.053 Sum_probs=41.1
Q ss_pred CeEEEecCCEEEEEEEcCCCCCceEEEEeeeeeecCCCCCCCcccceeeeCCCCEEEEEEeCCCceeeEEccCC
Q psy16567 38 PSIQVCKGDTIIVDVKNHMIDREVTLHWHGVYQKVTPWMDGVPMVTQCPIPSSTTFRYKFPAMPSGTFFYHSHV 111 (127)
Q Consensus 38 P~i~v~~Gd~v~v~~~N~~~~~~~siH~HG~~~~~~~~~DG~~~~~~~~i~PG~~~~y~~~~~~~Gt~~yH~H~ 111 (127)
..+.+..|..|++.++=..- - |+...+. -|.. . -.-||..-...+.++++|+|+--|.-
T Consensus 140 n~lvlP~~~~v~~~~tS~DV--i-----Hsf~iP~----lg~k---~-daiPG~~~~~~~~~~~~G~~~g~Cse 198 (230)
T MTH00185 140 HRMVVPMESPIRVLITAEDV--L-----HSWTVPA----LGVK---M-DAVPGRLNQATFIISRPGLYYGQCSE 198 (230)
T ss_pred CeEEEecCCEEEEEEEcCcc--c-----ccccccc----cCce---e-EecCCceEEEEEEeCCcEEEEEEchh
Confidence 46888889999988875432 2 5555432 1221 1 24689999999999999999988853
No 112
>PF14451 Ub-Mut7C: Mut7-C ubiquitin
Probab=39.26 E-value=27 Score=22.18 Aligned_cols=28 Identities=18% Similarity=0.214 Sum_probs=23.4
Q ss_pred ceEEEEEECCCCCCCeEEEecCCEEEEE
Q psy16567 24 FERAILSINRQLPGPSIQVCKGDTIIVD 51 (127)
Q Consensus 24 ~~~~~~~~ng~~pgP~i~v~~Gd~v~v~ 51 (127)
.+..+..+||+.-++.-+++.||+|.|.
T Consensus 47 tEV~~i~vNG~~v~~~~~~~~Gd~v~V~ 74 (81)
T PF14451_consen 47 TEVGLILVNGRPVDFDYRLKDGDRVAVY 74 (81)
T ss_pred HHeEEEEECCEECCCcccCCCCCEEEEE
Confidence 5667788999987888899999999874
No 113
>smart00110 C1Q Complement component C1q domain. Globular domain found in many collagens and eponymously in complement C1q. When part of full length proteins these domains form a 'bouquet' due to the multimerization of heterotrimers. The C1q fold is similar to that of tumour necrosis factor.
Probab=39.18 E-value=34 Score=23.60 Aligned_cols=17 Identities=24% Similarity=0.583 Sum_probs=14.7
Q ss_pred CCeEEEecCCEEEEEEE
Q psy16567 37 GPSIQVCKGDTIIVDVK 53 (127)
Q Consensus 37 gP~i~v~~Gd~v~v~~~ 53 (127)
+-+|.+++||+|.|++.
T Consensus 95 s~vL~L~~GD~Vwl~l~ 111 (135)
T smart00110 95 GALLQLRQGDQVWLELP 111 (135)
T ss_pred cEEEEECCCCEEEEEEe
Confidence 35689999999999985
No 114
>KOG1554|consensus
Probab=38.49 E-value=28 Score=27.70 Aligned_cols=10 Identities=40% Similarity=0.564 Sum_probs=7.8
Q ss_pred eeEEccCCCC
Q psy16567 104 TFFYHSHVDR 113 (127)
Q Consensus 104 t~~yH~H~~~ 113 (127)
.=|||+|.+.
T Consensus 134 VGWyHSHPgY 143 (347)
T KOG1554|consen 134 VGWYHSHPGY 143 (347)
T ss_pred eeeeecCCCC
Confidence 6799999743
No 115
>KOG1692|consensus
Probab=38.22 E-value=1.3e+02 Score=22.49 Aligned_cols=21 Identities=24% Similarity=0.510 Sum_probs=15.6
Q ss_pred CCCEEEEEEeCCCceeeEEccC
Q psy16567 89 SSTTFRYKFPAMPSGTFFYHSH 110 (127)
Q Consensus 89 PG~~~~y~~~~~~~Gt~~yH~H 110 (127)
+..+-.|.|.|...|+|.| |-
T Consensus 74 ~~ssgk~tF~a~~~G~Y~f-CF 94 (201)
T KOG1692|consen 74 RESSGKYTFTAPKKGTYTF-CF 94 (201)
T ss_pred cccCceEEEEecCCceEEE-Ee
Confidence 3444578899999999888 53
No 116
>PRK07440 hypothetical protein; Provisional
Probab=37.78 E-value=39 Score=20.60 Aligned_cols=26 Identities=19% Similarity=0.202 Sum_probs=20.1
Q ss_pred EEEEEECCCCCC----CeEEEecCCEEEEE
Q psy16567 26 RAILSINRQLPG----PSIQVCKGDTIIVD 51 (127)
Q Consensus 26 ~~~~~~ng~~pg----P~i~v~~Gd~v~v~ 51 (127)
.-+..+|+.+.. +...++.||+|+|.
T Consensus 35 ~vav~~N~~iv~r~~w~~~~L~~gD~IEIv 64 (70)
T PRK07440 35 LVAVEYNGEILHRQFWEQTQVQPGDRLEIV 64 (70)
T ss_pred eEEEEECCEEeCHHHcCceecCCCCEEEEE
Confidence 456778888765 77889999999873
No 117
>COG4633 Plastocyanin domain containing protein [General function prediction only]
Probab=37.57 E-value=1.9e+02 Score=22.37 Aligned_cols=85 Identities=12% Similarity=0.103 Sum_probs=51.8
Q ss_pred ceEEEEEECCCCCCCeEEEecCCEEEEEEEcCCCCCceEEEEeeeeeecCCCCCCCcccceeeeCCCCEEEEEEeCCCce
Q psy16567 24 FERAILSINRQLPGPSIQVCKGDTIIVDVKNHMIDREVTLHWHGVYQKVTPWMDGVPMVTQCPIPSSTTFRYKFPAMPSG 103 (127)
Q Consensus 24 ~~~~~~~~ng~~pgP~i~v~~Gd~v~v~~~N~~~~~~~siH~HG~~~~~~~~~DG~~~~~~~~i~PG~~~~y~~~~~~~G 103 (127)
++.. ++..|.+-...|.|+.|.++++++.-..+ -+-. =-++ .+-.-+. ..++-++....+|+..++|
T Consensus 84 qeIs-itv~gGy~p~~IvV~~~v~~rl~f~Rkdp-spcl--e~i~----~pdfgia-----anlpl~q~ssIe~T~~s~g 150 (272)
T COG4633 84 QEIS-ITVDGGYIPSRIVVVDGVPVRLTFKRKDP-SPCL--ESIM----SPDFGIA-----ANLPLNQVSSIEFTPISKG 150 (272)
T ss_pred eEEE-EEEeCCccceeEEEecCcceEeeeccCCC-Ccch--hhcc----ccccccc-----ccCCcCceeEEEecccccc
Confidence 4444 44455444567899999999999887655 2211 0011 0000000 1245688889999999999
Q ss_pred eeEEccCCCCCceeeEEEE
Q psy16567 104 TFFYHSHVDRRPYCPEIEE 122 (127)
Q Consensus 104 t~~yH~H~~~~~~g~liV~ 122 (127)
.|.+-|-.... -|.++|+
T Consensus 151 e~af~cgmnm~-~G~~~ve 168 (272)
T COG4633 151 EYAFLCGMNMF-RGNIQVE 168 (272)
T ss_pred chhhhcchhhc-cCeeEEE
Confidence 99999976544 4555554
No 118
>PF06030 DUF916: Bacterial protein of unknown function (DUF916); InterPro: IPR010317 This family consists of putative cell surface proteins, from Firmicutes, of unknown function.
Probab=36.23 E-value=1.4e+02 Score=20.24 Aligned_cols=61 Identities=16% Similarity=0.177 Sum_probs=34.4
Q ss_pred EEEecCC--EEEEEEEcCCCCCceEEEEeeeeeec----------CC-CCCCCc--c-------cceeeeCCCCEEEEEE
Q psy16567 40 IQVCKGD--TIIVDVKNHMIDREVTLHWHGVYQKV----------TP-WMDGVP--M-------VTQCPIPSSTTFRYKF 97 (127)
Q Consensus 40 i~v~~Gd--~v~v~~~N~~~~~~~siH~HG~~~~~----------~~-~~DG~~--~-------~~~~~i~PG~~~~y~~ 97 (127)
|.++.|+ ++.|++.|..+ ....+..--..... .. -.|... . .....|+|+++++..|
T Consensus 21 L~~~P~q~~~l~v~i~N~s~-~~~tv~v~~~~A~Tn~nG~I~Y~~~~~~~d~sl~~~~~~~v~~~~~Vtl~~~~sk~V~~ 99 (121)
T PF06030_consen 21 LKVKPGQKQTLEVRITNNSD-KEITVKVSANTATTNDNGVIDYSQNNPKKDKSLKYPFSDLVKIPKEVTLPPNESKTVTF 99 (121)
T ss_pred EEeCCCCEEEEEEEEEeCCC-CCEEEEEEEeeeEecCCEEEEECCCCcccCcccCcchHHhccCCcEEEECCCCEEEEEE
Confidence 5667774 67788889887 66666553322111 00 011000 0 0123588999999999
Q ss_pred eCCC
Q psy16567 98 PAMP 101 (127)
Q Consensus 98 ~~~~ 101 (127)
.+.-
T Consensus 100 ~i~~ 103 (121)
T PF06030_consen 100 TIKM 103 (121)
T ss_pred EEEc
Confidence 8753
No 119
>TIGR02988 YaaA_near_RecF S4 domain protein YaaA. This small protein has a single S4 domain (pfam01479), as do bacterial ribosomal protein S4, some pseudouridine synthases, tyrosyl-tRNA synthetases. The S4 domain may bind RNA. Members of this protein family are found almost exclusively in the Firmicutes, and almost invariably just a few nucleotides upstream of the gene for the DNA replication and repair protein RecF. The few members of this family that are not near recF are found instead near dnaA and/or dnaN, the usual neighbors of recF, near the origin of replication. The conserved location suggests a possible role in replication in the Firmicutes lineage.
Probab=36.05 E-value=21 Score=20.72 Aligned_cols=22 Identities=23% Similarity=0.382 Sum_probs=16.9
Q ss_pred EEECCCCC-CCeEEEecCCEEEE
Q psy16567 29 LSINRQLP-GPSIQVCKGDTIIV 50 (127)
Q Consensus 29 ~~~ng~~p-gP~i~v~~Gd~v~v 50 (127)
..+||+.- .|..+++.||.|.|
T Consensus 36 V~VNg~~~~~~~~~l~~Gd~v~i 58 (59)
T TIGR02988 36 VLVNGELENRRGKKLYPGDVIEI 58 (59)
T ss_pred EEECCEEccCCCCCCCCCCEEEe
Confidence 45577754 67889999999986
No 120
>COG0832 UreB Urea amidohydrolase (urease) beta subunit [Amino acid transport and metabolism]
Probab=35.62 E-value=1.4e+02 Score=20.06 Aligned_cols=60 Identities=20% Similarity=0.286 Sum_probs=34.2
Q ss_pred eEEEecCC-EEEEEEEcCCCCCceEE--EEeeeeeecCCCCC-----C----CcccceeeeCCCCEEEEEEeC
Q psy16567 39 SIQVCKGD-TIIVDVKNHMIDREVTL--HWHGVYQKVTPWMD-----G----VPMVTQCPIPSSTTFRYKFPA 99 (127)
Q Consensus 39 ~i~v~~Gd-~v~v~~~N~~~~~~~si--H~HG~~~~~~~~~D-----G----~~~~~~~~i~PG~~~~y~~~~ 99 (127)
.|.+++|. ++.+.+.|..+ .|.-+ |+|=.........| | .|.-+..-.+||+.++..+..
T Consensus 12 ~IelN~gr~~~~i~V~NtGD-RPIQVGSHfHF~EvN~aL~FDR~~a~G~RLdIpagTAVRFEPG~~k~V~LV~ 83 (106)
T COG0832 12 DIELNAGRPTVTIEVANTGD-RPIQVGSHFHFFEVNRALSFDREKAYGMRLDIPAGTAVRFEPGDEKEVELVP 83 (106)
T ss_pred cEEEeCCCcceEEEEeecCC-CceEeecceeehhhCcceeechhhhcceEecccCCceEeeCCCCccEEEEEE
Confidence 36777774 66788999887 66544 55544332211111 1 011122235799999988875
No 121
>PF01847 VHL: von Hippel-Lindau disease tumour suppressor protein; InterPro: IPR022772 Von Hippel-Lindau disease tumor suppressor (VHL) has two domains: a roughly 100-residue N-terminal domain rich in beta sheet (beta domain) and a smaller alpha-helical domain (alpha domain), held together by two linkers and a polar interface. A large portion of the alpha domain surface, and a small portion of the beta domain, interact with ElonginC. About half of the tumorigenic mutations map to the alpha domain and its residues that contact ElonginC. The remaining mutations map to the beta domain, and significantly, to a beta domain surface patch uninvolved in ElonginC binding. This suggests that two intact macromolecular binding sites may be required for the tumor suppressor effects of VHL []. This entry represents both beta and alpha domains of VHL.; PDB: 3ZRF_L 3ZRC_C 1LM8_V 1LQB_C 1VCB_F.
Probab=35.49 E-value=69 Score=23.04 Aligned_cols=50 Identities=22% Similarity=0.326 Sum_probs=25.2
Q ss_pred CCeEEEe-cCCEEEEEEEcCCCCCceEEEEeeeeeecCCCCCCCcccceeeeCCCCEEEEE
Q psy16567 37 GPSIQVC-KGDTIIVDVKNHMIDREVTLHWHGVYQKVTPWMDGVPMVTQCPIPSSTTFRYK 96 (127)
Q Consensus 37 gP~i~v~-~Gd~v~v~~~N~~~~~~~siH~HG~~~~~~~~~DG~~~~~~~~i~PG~~~~y~ 96 (127)
-|.+|-. ..+...|+|.|... ...-+.|-. .+|.+ .....+.||+.+...
T Consensus 3 ~p~lRS~~S~~~s~V~F~N~s~-r~V~v~Wld--------y~G~~-~~Y~~L~Pg~~~~~~ 53 (156)
T PF01847_consen 3 RPLLRSLNSREPSFVRFVNRSP-RTVDVYWLD--------YDGKP-VPYGTLKPGQGRRQN 53 (156)
T ss_dssp --SS------SEEEEEEEE-SS-S-EEEEEE---------TTS-E-EE---B-TTEEEEEE
T ss_pred CCccccCCCCCceEEEEEECCC-CEEEEEEEc--------CCCcE-eeccccCCCCeEEcc
Confidence 3555443 45789999999998 777777733 34442 223458999888654
No 122
>PF14478 DUF4430: Domain of unknown function (DUF4430); PDB: 3U7Z_B 2BB5_A.
Probab=34.44 E-value=25 Score=21.13 Aligned_cols=22 Identities=23% Similarity=0.267 Sum_probs=12.5
Q ss_pred EEECCCCC---CCeEEEecCCEEEE
Q psy16567 29 LSINRQLP---GPSIQVCKGDTIIV 50 (127)
Q Consensus 29 ~~~ng~~p---gP~i~v~~Gd~v~v 50 (127)
+.+||+++ .-.+.++.||.|++
T Consensus 43 ~~vNG~~~~~ga~~~~l~~GD~i~~ 67 (68)
T PF14478_consen 43 YYVNGESANVGAGSYKLKDGDKITW 67 (68)
T ss_dssp EEETTEE-SS-CCC-B--TTEEEEE
T ss_pred EEECCEEhhcCcceeEeCCCCEEEe
Confidence 34588765 25578888888875
No 123
>PF05753 TRAP_beta: Translocon-associated protein beta (TRAPB); InterPro: IPR008856 This family consists of several eukaryotic translocon-associated protein beta (TRAPB) or signal sequence receptor beta subunit (SSR-beta) proteins. The normal translocation of nascent polypeptides into the lumen of the endoplasmic reticulum (ER) is thought to be aided in part by a translocon-associated protein (TRAP) complex consisting of 4 protein subunits. The association of mature proteins with the ER and Golgi, or other intracellular locales, such as lysosomes, depends on the initial targeting of the nascent polypeptide to the ER membrane. A similar scenario must also exist for proteins destined for secretion [].; GO: 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=34.14 E-value=1.9e+02 Score=21.13 Aligned_cols=60 Identities=13% Similarity=0.070 Sum_probs=30.7
Q ss_pred EEEEEEEcCCCCCceEEEEeeeeeecC--CCCCCCcccceeeeCCCCEEEEEEeCC--CceeeE
Q psy16567 47 TIIVDVKNHMIDREVTLHWHGVYQKVT--PWMDGVPMVTQCPIPSSTTFRYKFPAM--PSGTFF 106 (127)
Q Consensus 47 ~v~v~~~N~~~~~~~siH~HG~~~~~~--~~~DG~~~~~~~~i~PG~~~~y~~~~~--~~Gt~~ 106 (127)
+|.+++.|.+......+-+..-..+.. .-..|.......-|.||++.+..|.+. ..|.|-
T Consensus 41 ~V~~~iyN~G~~~A~dV~l~D~~fp~~~F~lvsG~~s~~~~~i~pg~~vsh~~vv~p~~~G~f~ 104 (181)
T PF05753_consen 41 TVTYTIYNVGSSAAYDVKLTDDSFPPEDFELVSGSLSASWERIPPGENVSHSYVVRPKKSGYFN 104 (181)
T ss_pred EEEEEEEECCCCeEEEEEEECCCCCccccEeccCceEEEEEEECCCCeEEEEEEEeeeeeEEEE
Confidence 455667788763222222222000000 012333334445689999999999874 456553
No 124
>PF05896 NQRA: Na(+)-translocating NADH-quinone reductase subunit A (NQRA); InterPro: IPR008703 This family consists of several bacterial Na+-translocating NADH-quinone reductase subunit A (NQRA) proteins. The Na+-translocating NADH: ubiquinone oxidoreductase (Na+-NQR) generates an electrochemical Na+ potential driven by aerobic respiration [].; GO: 0016655 oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor, 0006814 sodium ion transport, 0055114 oxidation-reduction process
Probab=33.70 E-value=55 Score=25.44 Aligned_cols=18 Identities=33% Similarity=0.711 Sum_probs=14.8
Q ss_pred CCCCCC--CeEEEecCCEEE
Q psy16567 32 NRQLPG--PSIQVCKGDTII 49 (127)
Q Consensus 32 ng~~pg--P~i~v~~Gd~v~ 49 (127)
-..++| |.|.|++||+|+
T Consensus 33 ~~Df~g~~Pkm~VkeGD~Vk 52 (257)
T PF05896_consen 33 PDDFPGMKPKMLVKEGDRVK 52 (257)
T ss_pred CcccCCCCccEEeccCCEEe
Confidence 345666 999999999998
No 125
>PRK10525 cytochrome o ubiquinol oxidase subunit II; Provisional
Probab=33.50 E-value=1.7e+02 Score=23.43 Aligned_cols=58 Identities=12% Similarity=0.064 Sum_probs=41.0
Q ss_pred CeEEEecCCEEEEEEEcCCCCCceEEEEeeeeeecCCCCCCCcccceeeeCCCCEEEEEEeCCCceeeEEccC
Q psy16567 38 PSIQVCKGDTIIVDVKNHMIDREVTLHWHGVYQKVTPWMDGVPMVTQCPIPSSTTFRYKFPAMPSGTFFYHSH 110 (127)
Q Consensus 38 P~i~v~~Gd~v~v~~~N~~~~~~~siH~HG~~~~~~~~~DG~~~~~~~~i~PG~~~~y~~~~~~~Gt~~yH~H 110 (127)
..|.+..|..|+++++-..- - |.+..+. .-|. --.-||..-+..|.++++|+|.-.|-
T Consensus 151 NeL~iP~g~pV~f~lTS~DV--i-----HSF~IP~---Lg~K-----~damPG~~n~l~~~a~~~G~Y~G~Ca 208 (315)
T PRK10525 151 NEIAFPANVPVYFKVTSNSV--M-----NSFFIPR---LGSQ-----IYAMAGMQTRLHLIANEPGTYDGISA 208 (315)
T ss_pred ccEEEecCCEEEEEEEEchh--h-----hhhhhhh---hCCe-----eecCCCceeEEEEEcCCCEEEEEECh
Confidence 56999999999999876532 2 4444332 1111 11458999999999999999998884
No 126
>PF13464 DUF4115: Domain of unknown function (DUF4115)
Probab=33.31 E-value=1.2e+02 Score=18.50 Aligned_cols=32 Identities=13% Similarity=0.099 Sum_probs=25.8
Q ss_pred CCCeEEEecCCEEEEEEEcCCCCCceEEEEeeeee
Q psy16567 36 PGPSIQVCKGDTIIVDVKNHMIDREVTLHWHGVYQ 70 (127)
Q Consensus 36 pgP~i~v~~Gd~v~v~~~N~~~~~~~siH~HG~~~ 70 (127)
+|..+.++.++.++|++-|... ..+.+.|-.+
T Consensus 28 ~G~~~~~~~~~~~~i~iGna~~---v~v~~nG~~~ 59 (77)
T PF13464_consen 28 AGETKTFEGKEPFRIRIGNAGA---VEVTVNGKPV 59 (77)
T ss_pred CCcEEEEeCCCCEEEEEeCCCc---EEEEECCEEC
Confidence 5788999999999999999864 6776766554
No 127
>cd00565 ThiS ThiaminS ubiquitin-like sulfur carrier protein. ThiS (ThiaminS) is a sulfur carrier protein involved in thiamin biosynthesis in bacteria. The ThiS fold, like those of two closely related proteins MoaD and Urm1, is similar to that of ubiquitin although there is little or no sequence similarity.
Probab=33.30 E-value=39 Score=19.93 Aligned_cols=24 Identities=21% Similarity=0.304 Sum_probs=18.1
Q ss_pred EEEECCCCCCCe----EEEecCCEEEEE
Q psy16567 28 ILSINRQLPGPS----IQVCKGDTIIVD 51 (127)
Q Consensus 28 ~~~~ng~~pgP~----i~v~~Gd~v~v~ 51 (127)
+..+||++-.+. ..++.||+|.|-
T Consensus 32 ~V~vNg~~v~~~~~~~~~L~~gD~V~ii 59 (65)
T cd00565 32 AVALNGEIVPRSEWASTPLQDGDRIEIV 59 (65)
T ss_pred EEEECCEEcCHHHcCceecCCCCEEEEE
Confidence 556899875554 789999998863
No 128
>COG2104 ThiS Sulfur transfer protein involved in thiamine biosynthesis [Coenzyme metabolism]
Probab=33.29 E-value=47 Score=20.34 Aligned_cols=27 Identities=22% Similarity=0.288 Sum_probs=20.4
Q ss_pred eEEEEEECCCCCC----CeEEEecCCEEEEE
Q psy16567 25 ERAILSINRQLPG----PSIQVCKGDTIIVD 51 (127)
Q Consensus 25 ~~~~~~~ng~~pg----P~i~v~~Gd~v~v~ 51 (127)
+..+..+||++-. .-..++.||+|+|.
T Consensus 32 ~~vav~vNg~iVpr~~~~~~~l~~gD~ievv 62 (68)
T COG2104 32 EGVAVAVNGEIVPRSQWADTILKEGDRIEVV 62 (68)
T ss_pred ceEEEEECCEEccchhhhhccccCCCEEEEE
Confidence 4556788998655 67888999998863
No 129
>PF11614 FixG_C: IG-like fold at C-terminal of FixG, putative oxidoreductase; PDB: 2R39_A.
Probab=32.85 E-value=1.2e+02 Score=19.93 Aligned_cols=58 Identities=12% Similarity=0.083 Sum_probs=23.0
Q ss_pred CCCeEEEecCC----EEEEEEEcCCCCCceEEE--EeeeeeecCCCCCCCcccceeeeCCCCEEEEEEeC
Q psy16567 36 PGPSIQVCKGD----TIIVDVKNHMIDREVTLH--WHGVYQKVTPWMDGVPMVTQCPIPSSTTFRYKFPA 99 (127)
Q Consensus 36 pgP~i~v~~Gd----~v~v~~~N~~~~~~~siH--~HG~~~~~~~~~DG~~~~~~~~i~PG~~~~y~~~~ 99 (127)
.+|..+...+. ...+++.|... .+..+. .-|.. ...+..+. ....|.||++....+.+
T Consensus 19 r~~ly~~~~dg~I~N~Y~lkl~Nkt~-~~~~~~i~~~g~~--~~~l~~~~---~~i~v~~g~~~~~~v~v 82 (118)
T PF11614_consen 19 RGPLYRELSDGSIRNQYTLKLTNKTN-QPRTYTISVEGLP--GAELQGPE---NTITVPPGETREVPVFV 82 (118)
T ss_dssp SS---------SEEEEEEEEEEE-SS-S-EEEEEEEES-S--S-EE-ES-----EEEE-TT-EEEEEEEE
T ss_pred CCCcEEEcCCCeEEEEEEEEEEECCC-CCEEEEEEEecCC--CeEEECCC---cceEECCCCEEEEEEEE
Confidence 35555534433 45689999887 454433 23311 11111111 12247899999988876
No 130
>cd08058 MPN_euk_mb Mpr1p, Pad1p N-terminal (MPN) domains with catalytic isopeptidase activity (metal-binding); eukaryotic. This family contains eukaryotic MPN (also known as Mov34, PAD-1, JAMM, JAB, MPN+) domains found in proteins with a variety of functions, including AMSH (associated molecule with the Src homology 3 domain (SH3) of STAM), H2A-DUB (histone H2A deubiquitinase), BRCC36 (BRCA1/BRCA2-containing complex subunit 36), as well as Rpn11 (regulatory particle number 11) and CSN5 (COP9 signalosome complex subunit 5). These domains contain the signature JAB1/MPN/Mov34 metalloenzyme (JAMM) motif, EXnHS/THX7SXXD, which is involved in zinc ion coordination and provides the active site for isopeptidase activity. Rpn11 is responsible for substrate deubiquitination during proteasomal degradation. It is essential for maintaining a correct cell cycle and normal mitochondrial morphology and physiology. CSN5 is critical for nuclear export and the degradation of several tumor suppressor prot
Probab=32.30 E-value=24 Score=23.44 Aligned_cols=10 Identities=40% Similarity=0.514 Sum_probs=7.5
Q ss_pred eeEEccCCCC
Q psy16567 104 TFFYHSHVDR 113 (127)
Q Consensus 104 t~~yH~H~~~ 113 (127)
.=|||+|...
T Consensus 68 vG~YHSHP~~ 77 (119)
T cd08058 68 VGWYHSHPTF 77 (119)
T ss_pred EEEEecCCCC
Confidence 3599999844
No 131
>PRK06437 hypothetical protein; Provisional
Probab=31.61 E-value=54 Score=19.74 Aligned_cols=24 Identities=17% Similarity=0.167 Sum_probs=18.7
Q ss_pred EEEECCCCCCCeEEEecCCEEEEE
Q psy16567 28 ILSINRQLPGPSIQVCKGDTIIVD 51 (127)
Q Consensus 28 ~~~~ng~~pgP~i~v~~Gd~v~v~ 51 (127)
+...||.+-.+.-.++.||+|+|.
T Consensus 38 aV~vNg~iv~~~~~L~dgD~Veiv 61 (67)
T PRK06437 38 VVIVNGSPVLEDHNVKKEDDVLIL 61 (67)
T ss_pred EEEECCEECCCceEcCCCCEEEEE
Confidence 455888866677889999999874
No 132
>smart00363 S4 S4 RNA-binding domain.
Probab=30.97 E-value=46 Score=17.95 Aligned_cols=24 Identities=33% Similarity=0.346 Sum_probs=17.6
Q ss_pred EEECCCCC-CCeEEEecCCEEEEEE
Q psy16567 29 LSINRQLP-GPSIQVCKGDTIIVDV 52 (127)
Q Consensus 29 ~~~ng~~p-gP~i~v~~Gd~v~v~~ 52 (127)
..+||+.. .|...++.||.|.+.+
T Consensus 28 i~vng~~~~~~~~~l~~gd~i~~~~ 52 (60)
T smart00363 28 VKVNGKKVTKPSYIVKPGDVISVRG 52 (60)
T ss_pred EEECCEEecCCCeEeCCCCEEEEcc
Confidence 44677655 5778889999988765
No 133
>PF07653 SH3_2: Variant SH3 domain; InterPro: IPR011511 SH3 (src Homology-3) domains are small protein modules containing approximately 50 amino acid residues [, ]. They are found in a great variety of intracellular or membrane-associated proteins [, , ] for example, in a variety of proteins with enzymatic activity, in adaptor proteins that lack catalytic sequences and in cytoskeletal proteins, such as fodrin and yeast actin binding protein ABP-1. The SH3 domain has a characteristic fold which consists of five or six beta-strands arranged as two tightly packed anti-parallel beta sheets. The linker regions may contain short helices []. The surface of the SH3-domain bears a flat, hydrophobic ligand-binding pocket which consists of three shallow grooves defined by conservative aromatic residues in which the ligand adopts an extended left-handed helical arrangement. The ligand binds with low affinity but this may be enhanced by multiple interactions. The region bound by the SH3 domain is in all cases proline-rich and contains PXXP as a core-conserved binding motif. The function of the SH3 domain is not well understood but they may mediate many diverse processes such as increasing local concentration of proteins, altering their subcellular location and mediating the assembly of large multiprotein complexes []. This entry represents a variant of the SH3 domain.; PDB: 1I1J_B 1K0X_A 1HJD_A 2KEA_A 1KJW_A 1JXM_A 1JXO_B 2EBP_A 2DL3_A 2EYX_A ....
Probab=30.67 E-value=28 Score=19.74 Aligned_cols=13 Identities=38% Similarity=0.404 Sum_probs=9.6
Q ss_pred eEEEecCCEEEEE
Q psy16567 39 SIQVCKGDTIIVD 51 (127)
Q Consensus 39 ~i~v~~Gd~v~v~ 51 (127)
.|.+++||.|+|.
T Consensus 15 ~Ls~~~Gd~i~v~ 27 (55)
T PF07653_consen 15 ELSFKKGDVIEVL 27 (55)
T ss_dssp B-EB-TTEEEEEE
T ss_pred ceEEecCCEEEEE
Confidence 3999999999986
No 134
>PRK10862 SoxR reducing system protein RseC; Provisional
Probab=29.50 E-value=58 Score=23.08 Aligned_cols=15 Identities=7% Similarity=0.266 Sum_probs=12.0
Q ss_pred EecCCEEEEEEEcCC
Q psy16567 42 VCKGDTIIVDVKNHM 56 (127)
Q Consensus 42 v~~Gd~v~v~~~N~~ 56 (127)
++.||.|+|.+....
T Consensus 59 ~~vGD~V~v~i~e~~ 73 (154)
T PRK10862 59 LVPGQKVELGIAEGS 73 (154)
T ss_pred CCCCCEEEEecchhh
Confidence 688999999876643
No 135
>MTH00076 COX2 cytochrome c oxidase subunit II; Provisional
Probab=29.33 E-value=2.5e+02 Score=21.15 Aligned_cols=58 Identities=12% Similarity=0.025 Sum_probs=39.7
Q ss_pred eEEEecCCEEEEEEEcCCCCCceEEEEeeeeeecCCCCCCCcccceeeeCCCCEEEEEEeCCCceeeEEccCC
Q psy16567 39 SIQVCKGDTIIVDVKNHMIDREVTLHWHGVYQKVTPWMDGVPMVTQCPIPSSTTFRYKFPAMPSGTFFYHSHV 111 (127)
Q Consensus 39 ~i~v~~Gd~v~v~~~N~~~~~~~siH~HG~~~~~~~~~DG~~~~~~~~i~PG~~~~y~~~~~~~Gt~~yH~H~ 111 (127)
.|.+..|..|++.++-.. .- |+...+. -|.. .. .-||..-...+.++++|+|.--|.-
T Consensus 141 ~l~lP~~~~v~~~~tS~D--Vi-----Hsf~vP~----lg~k---~d-a~PG~~n~~~~~~~~~G~~~g~C~e 198 (228)
T MTH00076 141 RMVVPMESPIRMLITAED--VL-----HSWAVPS----LGIK---TD-AIPGRLNQTSFIASRPGVYYGQCSE 198 (228)
T ss_pred eEEEecCCEEEEEEEecc--cc-----ccccccc----cCce---EE-ccCCcceeEEEEeCCcEEEEEEChh
Confidence 578888999998887543 22 5555432 1221 11 4589998899999999999887753
No 136
>PRK01777 hypothetical protein; Validated
Probab=29.21 E-value=38 Score=22.17 Aligned_cols=24 Identities=13% Similarity=0.130 Sum_probs=19.1
Q ss_pred EEEEECCCCCCCeEEEecCCEEEE
Q psy16567 27 AILSINRQLPGPSIQVCKGDTIIV 50 (127)
Q Consensus 27 ~~~~~ng~~pgP~i~v~~Gd~v~v 50 (127)
....+||+.-..-=.++.||+|+|
T Consensus 50 ~~vgI~Gk~v~~d~~L~dGDRVeI 73 (95)
T PRK01777 50 NKVGIYSRPAKLTDVLRDGDRVEI 73 (95)
T ss_pred ceEEEeCeECCCCCcCCCCCEEEE
Confidence 356788887667778899999987
No 137
>MTH00117 COX2 cytochrome c oxidase subunit II; Provisional
Probab=28.51 E-value=2.4e+02 Score=21.19 Aligned_cols=57 Identities=12% Similarity=0.074 Sum_probs=38.6
Q ss_pred eEEEecCCEEEEEEEcCCCCCceEEEEeeeeeecCCCCCCCcccceeeeCCCCEEEEEEeCCCceeeEEccC
Q psy16567 39 SIQVCKGDTIIVDVKNHMIDREVTLHWHGVYQKVTPWMDGVPMVTQCPIPSSTTFRYKFPAMPSGTFFYHSH 110 (127)
Q Consensus 39 ~i~v~~Gd~v~v~~~N~~~~~~~siH~HG~~~~~~~~~DG~~~~~~~~i~PG~~~~y~~~~~~~Gt~~yH~H 110 (127)
.+.+..|..|++.++=.. .- |+...+. -|. .. -.-||..-...|.++.+|+|+--|.
T Consensus 141 ~lvlP~~~~v~~~~tS~D--Vi-----Hsf~vP~----lg~---K~-DavPG~~n~~~~~~~~~G~y~g~Cs 197 (227)
T MTH00117 141 RMVIPMESPIRILITAED--VL-----HSWAVPS----LGV---KT-DAVPGRLNQTSFITTRPGVFYGQCS 197 (227)
T ss_pred eEEEecCceEEEEEEecc--hh-----hcccccc----cCc---ee-EecCCceEEEEEEEcccceEEEEec
Confidence 477888888888876542 22 5544432 121 11 1468999999999999999998874
No 138
>KOG3201|consensus
Probab=28.11 E-value=19 Score=26.63 Aligned_cols=9 Identities=44% Similarity=0.685 Sum_probs=7.2
Q ss_pred CCCCCCCCc
Q psy16567 2 CADCLKGNQ 10 (127)
Q Consensus 2 ~~~~~~~~~ 10 (127)
||||+|=-+
T Consensus 109 aADClFfdE 117 (201)
T KOG3201|consen 109 AADCLFFDE 117 (201)
T ss_pred eccchhHHH
Confidence 899998655
No 139
>PRK08364 sulfur carrier protein ThiS; Provisional
Probab=27.82 E-value=55 Score=19.78 Aligned_cols=24 Identities=29% Similarity=0.289 Sum_probs=16.9
Q ss_pred EEEEECCCCCCCeEEEecCCEEEE
Q psy16567 27 AILSINRQLPGPSIQVCKGDTIIV 50 (127)
Q Consensus 27 ~~~~~ng~~pgP~i~v~~Gd~v~v 50 (127)
.+...|+++-.+.-.++.||+|++
T Consensus 40 v~v~vNg~iv~~~~~l~~gD~Vei 63 (70)
T PRK08364 40 AIAKVNGKVALEDDPVKDGDYVEV 63 (70)
T ss_pred EEEEECCEECCCCcCcCCCCEEEE
Confidence 456677776556667788888775
No 140
>PRK09838 periplasmic copper-binding protein; Provisional
Probab=27.78 E-value=92 Score=21.10 Aligned_cols=21 Identities=10% Similarity=0.170 Sum_probs=16.1
Q ss_pred EEecCCEEEEEEEcCCCCCceE
Q psy16567 41 QVCKGDTIIVDVKNHMIDREVT 62 (127)
Q Consensus 41 ~v~~Gd~v~v~~~N~~~~~~~s 62 (127)
.++.||+|+++|..... ....
T Consensus 88 ~lk~G~~V~F~~~~~~~-~~~i 108 (115)
T PRK09838 88 EIKTGDKVAFNFVQQGN-LSLL 108 (115)
T ss_pred cCCCCCEEEEEEEEcCC-cEEE
Confidence 56889999999998766 4433
No 141
>cd05886 Ig1_Nectin-1_like First immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins. Ig1_Nectin-1_like: domain similar to the first immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. In addition nectins heterophilically trans-interact with other CAMs such as nectin-like molecules (Necls), nectin-1 for example, has been shown to trans-interact with Necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is
Probab=27.27 E-value=1.8e+02 Score=18.76 Aligned_cols=45 Identities=13% Similarity=0.131 Sum_probs=28.4
Q ss_pred CCceEEEEEECCCCCCCeEEEecCCEEEEEEEcCCCCCceEEEEeeeee
Q psy16567 22 DGFERAILSINRQLPGPSIQVCKGDTIIVDVKNHMIDREVTLHWHGVYQ 70 (127)
Q Consensus 22 ~G~~~~~~~~ng~~pgP~i~v~~Gd~v~v~~~N~~~~~~~siH~HG~~~ 70 (127)
+|.+..+..|+++ .++.+.-...++|++. |... ...+|.++.+..
T Consensus 28 ~~~~~~va~y~~~-~g~~~~~~f~~Rv~f~--~~~~-~daSi~i~nl~~ 72 (99)
T cd05886 28 NGSKQNVAIYNPS-MGVSVLPPYRERVTFK--NPSF-EDGTISLSRLEL 72 (99)
T ss_pred CCCceEEEEECCc-CCcccCccccCcEEEc--CCCC-CcceEEEcCCcc
Confidence 4555667777754 2454444556777764 5444 678888888764
No 142
>cd04462 S1_RNAPII_Rpb7 S1_RNAPII_Rpb7: Eukaryotic RNA polymerase II (RNAPII) Rpb7 subunit C-terminal S1 domain. RNAPII is composed of 12 subunits (Rpb1-12). Rpb4 and Rpb7 form a heterodimer that associate with the RNAPII core. Rpb7 is a homolog of the Rpc25 of RNA polymerase III, RpoE of the archaeal RNA polymerase, and Rpa43 of eukaryotic RNA polymerase I. Rpb7 has two domains, an N-terminal ribonucleoprotein (RNP) domain and a C-terminal S1 domain, both of which bind single-stranded RNA. It is possible that the S1 domain interacts with the nascent RNA transcript, assisted by the RNP domain. In yeast, Rpb4/Rpb7 is necessary for promoter-directed transcription initiation. They also play a role in regulating transcription-coupled repair in the Rad26-dependent pathway, in efficient mRNA export, and in transcription termination.
Probab=27.08 E-value=99 Score=19.64 Aligned_cols=20 Identities=10% Similarity=0.194 Sum_probs=16.5
Q ss_pred CeEEEecCCEEEEEEEcCCC
Q psy16567 38 PSIQVCKGDTIIVDVKNHMI 57 (127)
Q Consensus 38 P~i~v~~Gd~v~v~~~N~~~ 57 (127)
..+.++.|+.||+++.....
T Consensus 52 ~~~~i~~g~~VR~rV~~v~~ 71 (88)
T cd04462 52 EDIVIKKDTEVRLKIIGTRV 71 (88)
T ss_pred CcEEECCCCEEEEEEEEEEE
Confidence 47899999999999987543
No 143
>PRK06488 sulfur carrier protein ThiS; Validated
Probab=26.44 E-value=67 Score=18.90 Aligned_cols=25 Identities=20% Similarity=0.280 Sum_probs=18.5
Q ss_pred EEEEEECCCCCCC----eEEEecCCEEEE
Q psy16567 26 RAILSINRQLPGP----SIQVCKGDTIIV 50 (127)
Q Consensus 26 ~~~~~~ng~~pgP----~i~v~~Gd~v~v 50 (127)
.-+..+|+.+-.. ...++.||+|+|
T Consensus 30 ~vavavN~~iv~~~~~~~~~L~dgD~Iei 58 (65)
T PRK06488 30 WLATAVNGELVHKEARAQFVLHEGDRIEI 58 (65)
T ss_pred eEEEEECCEEcCHHHcCccccCCCCEEEE
Confidence 3457888887543 678899999886
No 144
>PF14977 FAM194: FAM194 protein
Probab=26.27 E-value=2.8e+02 Score=20.79 Aligned_cols=44 Identities=11% Similarity=0.103 Sum_probs=34.8
Q ss_pred CcceEeecCCceEEEEEECCCCCCC---eEEEecCCEEEEEEEcCCC
Q psy16567 14 RRKGCVTADGFERAILSINRQLPGP---SIQVCKGDTIIVDVKNHMI 57 (127)
Q Consensus 14 ~~~~~v~~~G~~~~~~~~ng~~pgP---~i~v~~Gd~v~v~~~N~~~ 57 (127)
++....+.+|.....|..+....+| .|.++..+.+.|++.++..
T Consensus 86 ~gG~~~D~~G~~~k~W~W~~~~~~Pp~~pi~~klN~~i~vri~~qd~ 132 (208)
T PF14977_consen 86 EGGQYFDQKGNRVKKWNWSSHVHAPPFQPISLKLNEQIKVRILSQDK 132 (208)
T ss_pred CCCEEEcCCCCEEEEEecCCCCCCCccccEEEEecCcEEEEEeccce
Confidence 4555666888888999997765555 3889999999999999866
No 145
>PF04246 RseC_MucC: Positive regulator of sigma(E), RseC/MucC; InterPro: IPR007359 This bacterial family of integral membrane proteins represents a positive regulator of the sigma(E) transcription factor, namely RseC/MucC. The sigma(E) transcription factor is up-regulated by cell envelope protein misfolding, and regulates the expression of genes that are collectively termed ECF (devoted to Extra-Cellular Functions) []. In Pseudomonas aeruginosa, derepression of sigma(E) is associated with the alginate-overproducing phenotype characteristic of chronic respiratory tract colonization in cystic fibrosis patients. The mechanism by which RseC/MucC positively regulates the sigma(E) transcription factor is unknown. RseC is also thought to have a role in thiamine biosynthesis in Salmonella typhimurium []. In addition, this family also includes an N-terminal part of RnfF, a Rhodobacter capsulatus protein, of unknown function, that is essential for nitrogen fixation. This protein also contains a domain found in ApbE protein IPR003374 from INTERPRO, which is itself involved in thiamine biosynthesis.
Probab=26.13 E-value=78 Score=21.48 Aligned_cols=17 Identities=24% Similarity=0.390 Sum_probs=13.5
Q ss_pred eEEEecCCEEEEEEEcC
Q psy16567 39 SIQVCKGDTIIVDVKNH 55 (127)
Q Consensus 39 ~i~v~~Gd~v~v~~~N~ 55 (127)
.+.++.||.|+|.+...
T Consensus 49 ~~~~~~GD~V~v~i~~~ 65 (135)
T PF04246_consen 49 PIGAKVGDRVEVEIPES 65 (135)
T ss_pred CCCCCCCCEEEEEeccc
Confidence 35688999999988754
No 146
>PF11142 DUF2917: Protein of unknown function (DUF2917); InterPro: IPR021317 This bacterial family of proteins appears to be restricted to Proteobacteria.
Probab=26.05 E-value=1.5e+02 Score=17.66 Aligned_cols=15 Identities=20% Similarity=0.656 Sum_probs=7.4
Q ss_pred CCCeEEEecCCEEEE
Q psy16567 36 PGPSIQVCKGDTIIV 50 (127)
Q Consensus 36 pgP~i~v~~Gd~v~v 50 (127)
||..+++..|++|.|
T Consensus 42 ~G~~l~l~~g~~vvl 56 (63)
T PF11142_consen 42 AGDSLRLRRGGRVVL 56 (63)
T ss_pred CCCEEEeCCCCEEEE
Confidence 344455555555444
No 147
>PF09962 DUF2196: Uncharacterized conserved protein (DUF2196); InterPro: IPR019240 A pair of adjacent genes, ablAB (acetyl-beta-lysine biosynthesis) encodes lysine 2,3-aminomutase and beta-lysine acetyltransferase in methanogenic archaea. Homologous pairs, possibly with identical function, occur in a wide range of species, including Bacillus subtilis. This model describes a conserved hypothetical protein, small in size, with a phylogenetic distribution moderately well correlated to that of the acetyltransferase family. This protein family is also described as DUF2196 and COG4895 from COG. The function is unknown.
Probab=25.98 E-value=62 Score=19.67 Aligned_cols=35 Identities=23% Similarity=0.308 Sum_probs=20.9
Q ss_pred EecCCEEEEEEEcCCCC------------CceEEEEeeeeeecCCCCCCC
Q psy16567 42 VCKGDTIIVDVKNHMID------------REVTLHWHGVYQKVTPWMDGV 79 (127)
Q Consensus 42 v~~Gd~v~v~~~N~~~~------------~~~siH~HG~~~~~~~~~DG~ 79 (127)
++.|..|.|.+.++-.. ...+.|.||+-++- .||.
T Consensus 9 I~~G~~V~IVlK~dQ~tg~lt~GiV~~iLT~s~~HP~GIKVrL---~~G~ 55 (62)
T PF09962_consen 9 IKPGITVEIVLKQDQRTGKLTEGIVKDILTNSPTHPHGIKVRL---EDGQ 55 (62)
T ss_pred ccCCCEEEEEECCCCCcCccccEEhheeecCCCCCCCCcEEEe---cCCC
Confidence 45566666666654321 13457889988764 4554
No 148
>PF07705 CARDB: CARDB; InterPro: IPR011635 The APHP (acidic peptide-dependent hydrolases/peptidase) domain is found in a variety of different proteins.; PDB: 2KUT_A 2L0D_A 3IDU_A 2KL6_A.
Probab=25.91 E-value=1.6e+02 Score=17.89 Aligned_cols=24 Identities=8% Similarity=0.174 Sum_probs=15.4
Q ss_pred eeCCCCEEEEEEeC--CCceeeEEcc
Q psy16567 86 PIPSSTTFRYKFPA--MPSGTFFYHS 109 (127)
Q Consensus 86 ~i~PG~~~~y~~~~--~~~Gt~~yH~ 109 (127)
.+.||++.++.|.. ..+|.|-+--
T Consensus 56 ~L~~g~~~~v~~~~~~~~~G~~~i~~ 81 (101)
T PF07705_consen 56 SLAPGESETVTFTWTPPSPGSYTIRV 81 (101)
T ss_dssp EB-TTEEEEEEEEEE-SS-CEEEEEE
T ss_pred CcCCCcEEEEEEEEEeCCCCeEEEEE
Confidence 57899888877765 5677775543
No 149
>TIGR03833 conserved hypothetical protein. A pair of adjacent genes, ablAB (acetyl-beta-lysine biosynthesis) encodes lysine 2,3-aminomutase and beta-lysine acetyltransferase in methanogenic archaea. Homologous pairs, possibly with identical function, occur in a wide range of species, including Bacillus subtilis. This model describes a conserved hypothetical protein, small in size, with a phylogenetic distribution moderately well correlated to that of the acetyltransferase family. This protein family is also described as DUF2196 and COG4895. The function is unknown.
Probab=25.56 E-value=75 Score=19.31 Aligned_cols=17 Identities=29% Similarity=0.474 Sum_probs=12.0
Q ss_pred ceEEEEeeeeeecCCCCCCC
Q psy16567 60 EVTLHWHGVYQKVTPWMDGV 79 (127)
Q Consensus 60 ~~siH~HG~~~~~~~~~DG~ 79 (127)
..+.|.||+-++- .||.
T Consensus 38 ~s~~Hp~GIKVrL---~dG~ 54 (62)
T TIGR03833 38 NSPTHPHGIKVRL---EDGQ 54 (62)
T ss_pred CCCCCCCceEEEE---ecCC
Confidence 3467999998765 5664
No 150
>PLN02303 urease
Probab=25.14 E-value=2.2e+02 Score=26.04 Aligned_cols=59 Identities=20% Similarity=0.272 Sum_probs=36.2
Q ss_pred EEEecC-CEEEEEEEcCCCCCceEE--EEeeeeeecCCCCC-----C----CcccceeeeCCCCEEEEEEeC
Q psy16567 40 IQVCKG-DTIIVDVKNHMIDREVTL--HWHGVYQKVTPWMD-----G----VPMVTQCPIPSSTTFRYKFPA 99 (127)
Q Consensus 40 i~v~~G-d~v~v~~~N~~~~~~~si--H~HG~~~~~~~~~D-----G----~~~~~~~~i~PG~~~~y~~~~ 99 (127)
|.+++| ++++|+++|..+ ++.-+ |+|=+........| | .|.-+..-.+||++++..+..
T Consensus 143 i~~n~gr~~~~l~v~n~gd-rpiqvgSH~hf~e~N~aL~FdR~~a~G~rLdipaGtavRfePG~~~~V~lv~ 213 (837)
T PLN02303 143 IIINAGRKAVKLKVTNTGD-RPIQVGSHYHFIETNPYLVFDRRKAYGMRLNIPAGTAVRFEPGETKTVTLVS 213 (837)
T ss_pred eeeCCCCCeEEEEEeeCCC-CceEeccccchHhcCchhhccHHHhcCccccCCCCCeEeECCCCeeEEEEEE
Confidence 677777 689999999998 77655 66544332211111 1 111122236899999998874
No 151
>MTH00080 COX2 cytochrome c oxidase subunit II; Provisional
Probab=25.08 E-value=2.8e+02 Score=20.98 Aligned_cols=56 Identities=9% Similarity=-0.049 Sum_probs=36.6
Q ss_pred EEEecCCEEEEEEEcCCCCCceEEEEeeeeeecCCCCCCCcccceeeeCCCCEEEEEEeCCCceeeEEccC
Q psy16567 40 IQVCKGDTIIVDVKNHMIDREVTLHWHGVYQKVTPWMDGVPMVTQCPIPSSTTFRYKFPAMPSGTFFYHSH 110 (127)
Q Consensus 40 i~v~~Gd~v~v~~~N~~~~~~~siH~HG~~~~~~~~~DG~~~~~~~~i~PG~~~~y~~~~~~~Gt~~yH~H 110 (127)
+.+..|..|++.++=.. .- |....+.. |. ... .-||..-...+.++++|+|.=-|.
T Consensus 145 l~lP~~~~v~~~itS~D--Vi-----HSf~vP~l----g~---K~D-avPGr~n~~~~~~~~~G~y~g~Cs 200 (231)
T MTH00080 145 CVLPCDTNIRFCITSSD--VI-----HSWALPSL----SI---KMD-AMSGILSTLCYSFPMPGVFYGQCS 200 (231)
T ss_pred eEeecCcEEEEEEEeCc--cc-----cccccccc----Cc---eee-ccCCceEEEEEEEcCceEEEEEeh
Confidence 57788888888876542 23 33333221 11 111 348999899999999999988884
No 152
>TIGR01451 B_ant_repeat conserved repeat domain. This model represents the conserved region of about 53 amino acids shared between regions, usually repeated, of proteins from a small number of phylogenetically distant prokaryotes. Examples include a 132-residue region found repeated in three of the five longest proteins of Bacillus anthracis, a 131-residue repeat in a cell wall-anchored protein of Enterococcus faecalis, and a 120-residue repeat in Methanobacterium thermoautotrophicum. A similar region is found in some Chlamydial outer membrane proteins.
Probab=24.65 E-value=53 Score=18.81 Aligned_cols=21 Identities=14% Similarity=0.181 Sum_probs=17.1
Q ss_pred eeCCCCEEEEEEeCCCceeeE
Q psy16567 86 PIPSSTTFRYKFPAMPSGTFF 106 (127)
Q Consensus 86 ~i~PG~~~~y~~~~~~~Gt~~ 106 (127)
.+.||+..+|...+.+.|.-+
T Consensus 7 ~~~~Gd~v~Yti~v~N~g~~~ 27 (53)
T TIGR01451 7 VATIGDTITYTITVTNNGNVP 27 (53)
T ss_pred ccCCCCEEEEEEEEEECCCCc
Confidence 478999999999997776544
No 153
>PF00868 Transglut_N: Transglutaminase family; InterPro: IPR001102 Synonym(s): Protein-glutamine gamma-glutamyltransferase, Fibrinoligase, TGase Protein-glutamine gamma-glutamyltransferases (2.3.2.13 from EC) (TGase) are calcium-dependent enzymes that catalyse the cross-linking of proteins by promoting the formation of isopeptide bonds between the gamma-carboxyl group of a glutamine in one polypeptide chain and the epsilon-amino group of a lysine in a second polypeptide chain. TGases also catalyse the conjugation of polyamines to proteins [, ]. Transglutaminases are widely distributed in various organs, tissues and body fluids. The best known transglutaminase is blood coagulation factor XIII, a plasma tetrameric protein composed of two catalytic A subunits and two non-catalytic B subunits. Factor XIII is responsible for cross-linking fibrin chains, thus stabilising the fibrin clot. There are commonly three domains: N-terminal, middle (IPR013808 from INTERPRO) and C-terminal (IPR013807 from INTERPRO). This entry represents the N-terminal domain found in transglutaminases.; GO: 0018149 peptide cross-linking; PDB: 1L9N_B 1NUF_A 1NUD_A 1NUG_B 1L9M_A 1KV3_C 3S3S_A 2Q3Z_A 3LY6_A 3S3P_A ....
Probab=24.00 E-value=1.3e+02 Score=20.14 Aligned_cols=19 Identities=16% Similarity=0.494 Sum_probs=16.2
Q ss_pred CCCCeEEEecCCEEEEEEE
Q psy16567 35 LPGPSIQVCKGDTIIVDVK 53 (127)
Q Consensus 35 ~pgP~i~v~~Gd~v~v~~~ 53 (127)
+..+.|.|++|+.+.|++.
T Consensus 22 y~~~~LVVRRGQ~F~i~l~ 40 (118)
T PF00868_consen 22 YESPRLVVRRGQPFTITLR 40 (118)
T ss_dssp TSSSSEEEETTSEEEEEEE
T ss_pred cCCCCEEEECCCEEEEEEE
Confidence 4578899999999988876
No 154
>cd08069 MPN_RPN11_CSN5 Mov34/MPN/PAD-1 family: proteasomal regulatory protein Rpn11 and signalosome complex subunit CSN5. This family contains proteasomal regulatory protein Rpn11 (26S proteasome regulatory subunit rpn11; PAD1; POH1; RPN11; PSMD14; Rpn11 subunit of the 19S-proteasome; regulatory particle number 11) and signalosomal CSN5 (COP9 signalosome complex subunit 5; COP9 complex homolog subunit 5; c-Jun activation domain-binding protein-1; CSN5/JAB1; JAB1). COP9 signalosome (CSN) and the proteasome lid are paralogous complexes and their respective subunits CSN5 and Rpn11 are most closely related between the two complexes, both containing the conserved JAMM (JAB1/MPN/Mov34 metalloenzyme) motif involved in zinc ion coordination and providing the active site for isopeptidase activity. Rpn11 is responsible for substrate deubiquitination during proteasomal degradation. It is essential for maintaining a correct cell cycle and normal mitochondrial morphology and physiology; mutations i
Probab=23.76 E-value=75 Score=24.56 Aligned_cols=9 Identities=44% Similarity=0.693 Sum_probs=7.3
Q ss_pred eeEEccCCC
Q psy16567 104 TFFYHSHVD 112 (127)
Q Consensus 104 t~~yH~H~~ 112 (127)
.=|||+|..
T Consensus 90 VGWYHSHP~ 98 (268)
T cd08069 90 VGWYHSHPG 98 (268)
T ss_pred EeeeccCCC
Confidence 459999985
No 155
>cd08068 MPN_BRCC36 Mov34/MPN/PAD-1 family: BRCC36, a subunit of BRCA1-A complex. BRCC36 (BRCA1-A complex subunit BRCC36; BRCA1/BRCA2-containing complex subunit 36; BRCA1/BRCA2-containing complex subunit 3; BRCC3; BRISC complex subunit BRCC36; BRCC36 isopeptidase complex; Lys-63-specific deubiquitinase BRCC36) and BRCC36-like domains are members of JAMM/MPN+ deubiquitinases (DUBs), possibly with Zn2+-dependent ubiquitin isopeptidase activity. BRCC36 is part of the BRCA1/BRCA2/BARD1-containing nuclear complex that displays an E3 ubiquitin ligase activity. It is targeted to DNA damage foci after irradiation; RAP80 recruits the Abraxas-BRCC36-BRCA1-BARD1 complex to DNA double strand breaks (DSBs) for DNA repair through specific recognition of Lys 63-linked polyubiquitinated proteins by its tandem ubiquitin-interacting motifs. A new protein, MERIT40 (mediator of RAP80 interactions and targeting 40 kDa), also named NBA1 (new component of the BRCA1 A complex), exists in the same BRCA1-contai
Probab=23.68 E-value=41 Score=25.87 Aligned_cols=10 Identities=40% Similarity=0.554 Sum_probs=7.8
Q ss_pred eeEEccCCCC
Q psy16567 104 TFFYHSHVDR 113 (127)
Q Consensus 104 t~~yH~H~~~ 113 (127)
.=|||+|.+.
T Consensus 92 VGwYHSHP~~ 101 (244)
T cd08068 92 VGWYHSHPHI 101 (244)
T ss_pred EEEEecCCCC
Confidence 4699999844
No 156
>PRK07696 sulfur carrier protein ThiS; Provisional
Probab=23.66 E-value=79 Score=18.95 Aligned_cols=26 Identities=19% Similarity=0.301 Sum_probs=19.3
Q ss_pred EEEEEECCCCCC----CeEEEecCCEEEEE
Q psy16567 26 RAILSINRQLPG----PSIQVCKGDTIIVD 51 (127)
Q Consensus 26 ~~~~~~ng~~pg----P~i~v~~Gd~v~v~ 51 (127)
.-+..+|+.+-. +...++.||+|+|.
T Consensus 32 ~vav~vN~~iv~r~~w~~~~L~~gD~iEIv 61 (67)
T PRK07696 32 IVVVERNKDILQKDDHTDTSVFDGDQIEIV 61 (67)
T ss_pred eEEEEECCEEeCHHHcCceecCCCCEEEEE
Confidence 456788888654 44889999999873
No 157
>PF04170 NlpE: NlpE N-terminal domain; InterPro: IPR007298 This family represents a bacterial outer membrane lipoprotein that is necessary for signalling by the Cpx pathway []. This pathway responds to cell envelope disturbances and increases the expression of periplasmic protein folding and degradation factors. While the molecular function of the NlpE protein is unknown, it may be involved in detecting bacterial adhesion to abiotic surfaces. NlpE from Escherichia coli and Salmonella typhi is also known to confer copper tolerance in copper-sensitive strains of E. coli, and may be involved in copper efflux and delivery of copper to copper-dependent enzymes [].; PDB: 3LHN_A 2Z4I_B 2Z4H_A.
Probab=23.57 E-value=1.3e+02 Score=19.00 Aligned_cols=32 Identities=31% Similarity=0.453 Sum_probs=19.9
Q ss_pred CCCCCCCCccccCcceEeecCCceEEEEEECCCCCCC
Q psy16567 2 CADCLKGNQKACRRKGCVTADGFERAILSINRQLPGP 38 (127)
Q Consensus 2 ~~~~~~~~~~~~~~~~~v~~~G~~~~~~~~ng~~pgP 38 (127)
||||- +|+ ..-.+..||.......|.++-.++
T Consensus 7 CADC~-GI~----t~L~L~~D~ty~l~~~Yl~~~~~~ 38 (87)
T PF04170_consen 7 CADCP-GIK----TTLTLNADGTYTLTETYLGKEDGP 38 (87)
T ss_dssp ETTSS-EEE----EEEEE-TTSEEEEEEEEETTTSCC
T ss_pred CCCCC-CeE----EEEEECCCCcEEEEEEECCCCCCC
Confidence 99995 333 344566788766677787765444
No 158
>PRK14868 DNA topoisomerase VI subunit B; Provisional
Probab=23.15 E-value=2.8e+02 Score=25.19 Aligned_cols=59 Identities=20% Similarity=0.214 Sum_probs=32.4
Q ss_pred cCCEEEEEEEcCCCCCceEEEEeeeeeecC---------CCCCCCcccce-eeeCCCCEEEEEEeCCCce
Q psy16567 44 KGDTIIVDVKNHMIDREVTLHWHGVYQKVT---------PWMDGVPMVTQ-CPIPSSTTFRYKFPAMPSG 103 (127)
Q Consensus 44 ~Gd~v~v~~~N~~~~~~~siH~HG~~~~~~---------~~~DG~~~~~~-~~i~PG~~~~y~~~~~~~G 103 (127)
++++|.+++.|... ....+-++-+-.... -.+||...+.. ..|.||++.+..|.++.-|
T Consensus 709 ~~~~v~~~v~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~w~~~~~~~~~~~~~y~~~~~~ 777 (795)
T PRK14868 709 EDDTVTLVVENHSD-TNEDVEITDIVSAEPDGLGDDATVVEMDGEWFVKWSPTVPSGDTATLEYSVDDDA 777 (795)
T ss_pred cCCeEEEEEecCCC-cccceEEEeecccCccccCCCCcEEecCCceeEEEeeeeCCCceEEEEEEecCCc
Confidence 45679999999887 555554443211100 01444333222 2367777777777765443
No 159
>PF08116 Toxin_29: PhTx neurotoxin family; InterPro: IPR012634 This family consists of PhTx insecticidal neurotoxins that are found in the venom of Phoneutria nigriventer (Brazilian armed spider). The venom of the P. nigrivente contains numerous neurotoxic polypeptides of 30-140 amino acids, which exert a range of biological effects. While some of these neurotoxins are lethal to mice after intracerebroventricular injections, others are extremely toxic to insects of the orders Diptera and Dictyoptera but had much weaker toxic effects on mice [].; GO: 0009405 pathogenesis, 0005576 extracellular region
Probab=23.11 E-value=53 Score=16.91 Aligned_cols=17 Identities=24% Similarity=0.374 Sum_probs=13.5
Q ss_pred CCCCCCCccccCcceEe
Q psy16567 3 ADCLKGNQKACRRKGCV 19 (127)
Q Consensus 3 ~~~~~~~~~~~~~~~~v 19 (127)
+.|.||-||-++..+.-
T Consensus 1 afC~~nGqQCtSDgqCC 17 (31)
T PF08116_consen 1 AFCRYNGQQCTSDGQCC 17 (31)
T ss_pred CccccCccccCcCCcee
Confidence 46899999988877664
No 160
>PF15436 PGBA_N: Plasminogen-binding protein pgbA N-terminal
Probab=23.08 E-value=63 Score=24.52 Aligned_cols=24 Identities=29% Similarity=0.513 Sum_probs=20.9
Q ss_pred CCCCCCCeEEEecCCEEEEEEEcC
Q psy16567 32 NRQLPGPSIQVCKGDTIIVDVKNH 55 (127)
Q Consensus 32 ng~~pgP~i~v~~Gd~v~v~~~N~ 55 (127)
+..+|.|.+..+.||.|.++..|+
T Consensus 70 Q~aLP~p~~~pk~GD~vil~~~Y~ 93 (218)
T PF15436_consen 70 QDALPTPKMVPKKGDEVILNYLYN 93 (218)
T ss_pred hhcCCCCccccCCCCEEEEeeccc
Confidence 455899999999999999998875
No 161
>KOG1555|consensus
Probab=22.91 E-value=40 Score=27.01 Aligned_cols=11 Identities=36% Similarity=0.440 Sum_probs=8.6
Q ss_pred eeEEccCCCCC
Q psy16567 104 TFFYHSHVDRR 114 (127)
Q Consensus 104 t~~yH~H~~~~ 114 (127)
.=|||+|.+..
T Consensus 118 VGWYHSHP~f~ 128 (316)
T KOG1555|consen 118 VGWYHSHPGFG 128 (316)
T ss_pred EeeccCCCCCC
Confidence 56999998654
No 162
>cd08067 MPN_2A_DUB Mov34/MPN/PAD-1 family: Histone H2A deubiquitinase. This family includes histone H2A deubiquitinase (Histone H2A DUB;MYSM1; myb-like, SWIRM and MPN domains 1; 2ADUB; 2A-DUB; KIAA19152ADUB, or KIAA1915/MYSM1), a member of JAMM/MPN+ deubiquitinases (DUBs), with possible Zn2+-dependent ubiquitin isopeptidase activity. It contains the SWIRM (Swi3p, Rsc8p and Moira), and SANT (SWI-SNF, ADA N-CoR, TFIIIB)/Myb domains; the SANT, but not the SWIRM, domain can bind directly to DNA. 2A-DUB is specific for monoubiquitinated H2A (uH2A), regulating transcription by coordinating histone acetylation and deubiquitination, and destabilizing the association of linker histone H1 with nucleosomes. 2A-DUB interacts with p/CAF (p300/CBP-associated factor) in a co-regulatory protein complex, where the status of acetylation of nucleosomal histones modulates its deubiquitinase activity. 2A-DUB is a positive regulator of androgen receptor (AR) transactivation activity on a reporter gene; it p
Probab=22.72 E-value=44 Score=24.52 Aligned_cols=11 Identities=36% Similarity=0.440 Sum_probs=8.0
Q ss_pred eeEEccCCCCC
Q psy16567 104 TFFYHSHVDRR 114 (127)
Q Consensus 104 t~~yH~H~~~~ 114 (127)
.=|||+|....
T Consensus 82 VGwYHSHP~~~ 92 (187)
T cd08067 82 VGWYHSHPTFP 92 (187)
T ss_pred EEEEecCCCCC
Confidence 45999998543
No 163
>PF10949 DUF2777: Protein of unknown function (DUF2777); InterPro: IPR024488 This family of proteins with unknown function appears to be restricted to Bacillaceae.
Probab=22.16 E-value=2.1e+02 Score=21.21 Aligned_cols=39 Identities=15% Similarity=0.183 Sum_probs=29.7
Q ss_pred CcceEeecCCceEEEEEECCCC---CCCeEEEecCCEEEEEE
Q psy16567 14 RRKGCVTADGFERAILSINRQL---PGPSIQVCKGDTIIVDV 52 (127)
Q Consensus 14 ~~~~~v~~~G~~~~~~~~ng~~---pgP~i~v~~Gd~v~v~~ 52 (127)
+.+..+..+|+....+.+.+.+ -+-.+.++.||+|+++=
T Consensus 46 ~~~iei~~~~~W~~g~l~~~~~v~~~~e~~~L~~ge~IRi~K 87 (185)
T PF10949_consen 46 FEEIEIFRDGRWMKGILFDQGIVSIDGEQIPLSNGESIRIRK 87 (185)
T ss_pred CCcEEEEECCcEEEEEEecCceEEeCCeEEecCCCCEEEEee
Confidence 4456788888888887775543 35779999999999873
No 164
>PF07385 DUF1498: Protein of unknown function (DUF1498); InterPro: IPR010864 This family consists of several hypothetical bacterial proteins of around 225 residues in length. The function of this family is unknown.; PDB: 3MPB_B 3KMH_A.
Probab=22.08 E-value=2.1e+02 Score=21.81 Aligned_cols=31 Identities=23% Similarity=0.490 Sum_probs=17.0
Q ss_pred CcceEeecCCceEEEEEECCCCCCCeEEEecCCEEEE
Q psy16567 14 RRKGCVTADGFERAILSINRQLPGPSIQVCKGDTIIV 50 (127)
Q Consensus 14 ~~~~~v~~~G~~~~~~~~ng~~pgP~i~v~~Gd~v~v 50 (127)
..+..|..||..+.+ .+|-.|++++|+.|.+
T Consensus 136 ~~~v~V~~DG~~~t~------~aG~~l~L~PGESiTL 166 (225)
T PF07385_consen 136 DTDVTVPVDGIRRTV------PAGTQLRLNPGESITL 166 (225)
T ss_dssp SS-EEEEETTEEEEE-------TT-EEEE-TT-EEEE
T ss_pred CCCeEEecCCcEEEe------cCCceEEeCCCCeEee
Confidence 455566666654331 2477888888888886
No 165
>COG1310 Predicted metal-dependent protease of the PAD1/JAB1 superfamily [General function prediction only]
Probab=21.93 E-value=51 Score=22.31 Aligned_cols=11 Identities=36% Similarity=0.510 Sum_probs=8.8
Q ss_pred eeEEccCCCCC
Q psy16567 104 TFFYHSHVDRR 114 (127)
Q Consensus 104 t~~yH~H~~~~ 114 (127)
.-|||+|.+..
T Consensus 72 vg~yHSHP~~~ 82 (134)
T COG1310 72 VGWYHSHPGGP 82 (134)
T ss_pred EEEEcCCCCCC
Confidence 57999999755
No 166
>cd04486 YhcR_OBF_like YhcR_OBF_like: A subfamily of OB-fold domains similar to the OB folds of Bacillus subtilis YhcR. YhcR is a sugar-nonspecific nuclease, which is active in the presence of Ca2+ and Mn2+. It cleaves RNA endonucleolytically, producing 3'-monophosphate nucleosides. YhcR appears to be the major Ca2+ activated nuclease of B. subtilis. YhcR may be localized in the cell wall.
Probab=21.91 E-value=62 Score=20.11 Aligned_cols=12 Identities=33% Similarity=0.457 Sum_probs=9.0
Q ss_pred EEEecCCEEEEE
Q psy16567 40 IQVCKGDTIIVD 51 (127)
Q Consensus 40 i~v~~Gd~v~v~ 51 (127)
-.++.||.|+|+
T Consensus 43 ~~~~~Gd~V~vt 54 (78)
T cd04486 43 ADVAVGDLVRVT 54 (78)
T ss_pred CCCCCCCEEEEE
Confidence 345789999885
No 167
>smart00207 TNF Tumour necrosis factor family. Family of cytokines that form homotrimeric or heterotrimeric complexes. TNF mediates mature T-cell receptor-induced apoptosis through the p75 TNF receptor.
Probab=21.76 E-value=84 Score=21.05 Aligned_cols=21 Identities=24% Similarity=0.365 Sum_probs=17.3
Q ss_pred CCCCCeEEEecCCEEEEEEEc
Q psy16567 34 QLPGPSIQVCKGDTIIVDVKN 54 (127)
Q Consensus 34 ~~pgP~i~v~~Gd~v~v~~~N 54 (127)
.+-|-++++++||+|.|++.+
T Consensus 87 ~y~ggvf~L~~gD~L~v~v~~ 107 (125)
T smart00207 87 VYLGGLFPLTAGDRLSVNVTE 107 (125)
T ss_pred eeeeeEEEecCCCEEEEEeCC
Confidence 345788999999999998765
No 168
>TIGR01683 thiS thiamine biosynthesis protein ThiS. This model represents ThiS, a small thiamine-biosynthesis protein related to MoaD, a molybdenum cofactor biosynthesis protein. Both proteins are involved in sulfur transfer. ThiS has a conserved Gly-Gly C-terminus that is modified, in reactions requiring ThiI, ThiF, IscS, and a sulfur atom from Cys, into the thiocarboxylate that provides the sulfur for thiazole biosynthesis.
Probab=21.23 E-value=1.3e+02 Score=17.58 Aligned_cols=27 Identities=19% Similarity=0.273 Sum_probs=19.2
Q ss_pred eEEEEEECCCCC----CCeEEEecCCEEEEE
Q psy16567 25 ERAILSINRQLP----GPSIQVCKGDTIIVD 51 (127)
Q Consensus 25 ~~~~~~~ng~~p----gP~i~v~~Gd~v~v~ 51 (127)
..-+..+|+.+- -+...++.||+|.|-
T Consensus 28 ~~v~v~vN~~iv~~~~~~~~~L~~gD~veii 58 (64)
T TIGR01683 28 RRVAVAVNGEIVPRSEWDDTILKEGDRIEIV 58 (64)
T ss_pred CeEEEEECCEEcCHHHcCceecCCCCEEEEE
Confidence 344667888863 355789999998863
No 169
>KOG4063|consensus
Probab=21.22 E-value=3.3e+02 Score=19.66 Aligned_cols=64 Identities=17% Similarity=0.259 Sum_probs=36.3
Q ss_pred CCCeEEEecCCEEEEEEEcCCCC--CceEEEEeeeeee------cCCCCCCCccc-----ceeeeCCCCEEEEEEeC
Q psy16567 36 PGPSIQVCKGDTIIVDVKNHMID--REVTLHWHGVYQK------VTPWMDGVPMV-----TQCPIPSSTTFRYKFPA 99 (127)
Q Consensus 36 pgP~i~v~~Gd~v~v~~~N~~~~--~~~siH~HG~~~~------~~~~~DG~~~~-----~~~~i~PG~~~~y~~~~ 99 (127)
|.+.=.+++|.+..|.+.=..+. +...--.||.... +.+..||-... ..||+.+||.++|.+..
T Consensus 46 ~t~pC~lkKgt~~si~I~F~~~~~~~~lkt~v~g~~lg~v~vPfpl~~~dacv~~~l~~gv~CPl~age~ytY~~sl 122 (158)
T KOG4063|consen 46 PTTPCQLKKGTEASIQIDFAPSRDTTKLKTVVHGITLGSVPVPFPLPASDACVCGNLLHGVYCPLSAGEDYTYLNSL 122 (158)
T ss_pred CCCceEEecCCeEEEEEEEeeccchhhhhheeeeeecccEeecCCCCCCcccccccccccccCcccCCCceEEEEEe
Confidence 33455678888777666533321 1222233443221 11235554333 57899999999999876
No 170
>cd02558 PSRA_1 PSRA_1: Pseudouridine synthase, a subgroup of the RluA family. This group is comprised of bacterial proteins assigned to the RluA family of pseudouridine synthases. Pseudouridine synthases catalyze the isomerization of specific uridines in an RNA molecule to pseudouridines (5-ribosyluracil, psi). No cofactors are required. The RluA family is comprised of proteins related to Escherichia coli RluA.
Probab=20.81 E-value=88 Score=23.63 Aligned_cols=25 Identities=8% Similarity=0.069 Sum_probs=19.8
Q ss_pred EEEECCCCCCCeEEEecCCEEEEEE
Q psy16567 28 ILSINRQLPGPSIQVCKGDTIIVDV 52 (127)
Q Consensus 28 ~~~~ng~~pgP~i~v~~Gd~v~v~~ 52 (127)
+|+.||+--.+.-+++.||+|.+..
T Consensus 3 ~~~~ng~~~~~~~~l~~gd~i~~~~ 27 (246)
T cd02558 3 VVDADGEPLDPDSPYRPGTFVWYYR 27 (246)
T ss_pred eECCCCcCCCCCceecCCCEEEEeC
Confidence 5778887666778999999988764
No 171
>COG3354 FlaG Putative archaeal flagellar protein G [Cell motility and secretion]
Probab=20.58 E-value=3.3e+02 Score=19.50 Aligned_cols=44 Identities=23% Similarity=0.277 Sum_probs=26.0
Q ss_pred cCcceEeecCC--ceEEEEEECCCCCCCeEEEecCCEE-EEEEEcCCC
Q psy16567 13 CRRKGCVTADG--FERAILSINRQLPGPSIQVCKGDTI-IVDVKNHMI 57 (127)
Q Consensus 13 ~~~~~~v~~~G--~~~~~~~~ng~~pgP~i~v~~Gd~v-~v~~~N~~~ 57 (127)
..+...|..|| .+....++- ..+|..+++.+|+.. ++++.+.++
T Consensus 87 d~~sitVliDG~iv~~a~~~~~-~~~gs~i~l~PG~Vg~ev~vn~~lS 133 (154)
T COG3354 87 DNTSITVLIDGNIVTPAYVTFT-SVNGSSIRLSPGQVGREVTVNEALS 133 (154)
T ss_pred CCCeEEEEEcCcEeccceEEEE-ecCCCeeEecCCceeeEEEeccCCC
Confidence 34556677787 332222222 235677888899988 666655554
No 172
>PF03743 TrbI: Bacterial conjugation TrbI-like protein ; InterPro: IPR005498 This entry represents type IV secretion system proteins VirB10, TraB and TrbI. Type IV secretion systems are found in plant and animal pathogens, as well as in symbiotic bacteria. The tumour-inducing (Ti) plasmid of Rhizobium radiobacter (Agrobacterium tumefaciens) encodes various DNA transfer systems: VirB, Tra and Trb, where the virB operon is required for the transfer DNA to the plant host and the tra/trb systems are required for the conjugal transfer of the Ti plasmid between cells of Agrobacterium [, ]. Of the two unlinked regions of octopine-type Ti plasmids that contain genes required for conjugal transfer, the tra gene cluster is probably required for conjugal DNA processing, whilst the other gene cluster, trb, probably directs the synthesis of a conjugal pilus and mating pore []. It has been suggested that TraB extends into the periplasmic space and is anchored in the inner membrane via a single transmembrane segment near the N terminus. It is also thought that TraB may interact with TraP, in order to stabilise the proposed transmembrane complex formed by the tra operon products []. The trbI gene encodes a 128-amino-acid polypeptide that is an intrinsic inner-membrane protein. TrbI may influence the kinetics of pilus outgrowth and/or retraction []. Although not essential for conjugation, the TrbI protein greatly increases conjugational efficiency []. In Plasmid pTiC58, all of the trb genes except trbI and trbK are essential for conjugal transfer [].; PDB: 2BHV_E 3JQO_b.
Probab=20.41 E-value=1e+02 Score=21.88 Aligned_cols=17 Identities=29% Similarity=0.413 Sum_probs=11.3
Q ss_pred CCeEEEecCCEEEEEEE
Q psy16567 37 GPSIQVCKGDTIIVDVK 53 (127)
Q Consensus 37 gP~i~v~~Gd~v~v~~~ 53 (127)
.|+|.+++|.+|.|.|.
T Consensus 166 ~Pti~v~~G~~v~I~v~ 182 (187)
T PF03743_consen 166 PPTITVPPGTPVNIFVN 182 (187)
T ss_dssp --EEEE-TT-EEEEEES
T ss_pred CCEEEECCCCEEEEEEc
Confidence 49999999999998653
No 173
>PF01345 DUF11: Domain of unknown function DUF11; InterPro: IPR001434 This group of sequences is represented by a conserved region of about 53 amino acids shared between regions, usually repeated, of proteins from a small number of phylogenetically distant prokaryotes. Examples include a 132-residue region found repeated in three of the five longest proteins of Bacillus anthracis, a 131-residue repeat in a cell wall-anchored protein of Enterococcus faecalis (Streptococcus faecalis), and a 120-residue repeat in Methanobacterium thermoautotrophicum. A similar region is found in some Chlamydia trachomatis outer membrane proteins. In C. trachomatis, three cysteine-rich proteins (also believed to be lipoproteins), MOMP, OMP6 and OMP3, make up the extracellular matrix of the outer membrane []. They are involved in the essential structural integrity of both the elementary body (EB) and recticulate body (RB) phase. They are thought to be involved in porin formation and, as these bacteria lack the peptidoglycan layer common to most Gram-negative microbes, such proteins are highly important in the pathogenicity of the organism.; GO: 0005727 extrachromosomal circular DNA
Probab=20.17 E-value=69 Score=19.25 Aligned_cols=19 Identities=16% Similarity=0.307 Sum_probs=15.9
Q ss_pred eeCCCCEEEEEEeCCCcee
Q psy16567 86 PIPSSTTFRYKFPAMPSGT 104 (127)
Q Consensus 86 ~i~PG~~~~y~~~~~~~Gt 104 (127)
.+.||+..+|.+.+.+.|.
T Consensus 36 ~~~~Gd~v~ytitvtN~G~ 54 (76)
T PF01345_consen 36 TANPGDTVTYTITVTNTGP 54 (76)
T ss_pred cccCCCEEEEEEEEEECCC
Confidence 4789999999999976664
Done!