RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy16567
(127 letters)
>gnl|CDD|219542 pfam07732, Cu-oxidase_3, Multicopper oxidase. This entry contains
many divergent copper oxidase-like domains that are not
recognised by the pfam00394 model.
Length = 119
Score = 130 bits (330), Expect = 1e-40
Identities = 47/93 (50%), Positives = 65/93 (69%), Gaps = 2/93 (2%)
Query: 19 VTADGFERAILSINRQLPGPSIQVCKGDTIIVDVKNHMIDREVTLHWHGVYQKVTPWMDG 78
VT G R ++ +N Q PGP+I+V +GDT++V+V N++ D T+HWHG+ Q TPW DG
Sbjct: 7 VTPLGGTRQVIGVNGQFPGPTIRVREGDTVVVNVTNNL-DEPTTIHWHGLRQPGTPWADG 65
Query: 79 VPMVTQCPIPSSTTFRYKFPAM-PSGTFFYHSH 110
VP VTQCPIP +F Y+F +GT++YHSH
Sbjct: 66 VPGVTQCPIPPGESFTYRFTVKQQAGTYWYHSH 98
>gnl|CDD|234193 TIGR03388, ascorbase, L-ascorbate oxidase, plant type. Members of
this protein family are the copper-containing enzyme
L-ascorbate oxidase (EC 1.10.3.3), also called
ascorbase. This family is found in flowering plants, and
shows greater sequence similarity to a family of
laccases (EC 1.10.3.2) from plants than to other known
ascorbate oxidases.
Length = 541
Score = 111 bits (280), Expect = 6e-30
Identities = 42/89 (47%), Positives = 54/89 (60%)
Query: 22 DGFERAILSINRQLPGPSIQVCKGDTIIVDVKNHMIDREVTLHWHGVYQKVTPWMDGVPM 81
D FE+ ++ IN Q PGP+I+ GDTI+V++ N + V +HWHG+ Q TPW DG
Sbjct: 16 DCFEKLVIGINGQFPGPTIRAQAGDTIVVELTNKLHTEGVVIHWHGIRQIGTPWADGTAG 75
Query: 82 VTQCPIPSSTTFRYKFPAMPSGTFFYHSH 110
VTQC I TF Y F GT+FYH H
Sbjct: 76 VTQCAINPGETFIYNFVVDRPGTYFYHGH 104
>gnl|CDD|215324 PLN02604, PLN02604, oxidoreductase.
Length = 566
Score = 105 bits (264), Expect = 9e-28
Identities = 41/89 (46%), Positives = 59/89 (66%)
Query: 22 DGFERAILSINRQLPGPSIQVCKGDTIIVDVKNHMIDREVTLHWHGVYQKVTPWMDGVPM 81
D F++ +++IN + PGP+I +GDT+IV++KN ++ V +HWHG+ Q TPW DG
Sbjct: 39 DCFKKLVITINGRSPGPTILAQQGDTVIVELKNSLLTENVAIHWHGIRQIGTPWFDGTEG 98
Query: 82 VTQCPIPSSTTFRYKFPAMPSGTFFYHSH 110
VTQCPI TF Y+F GT+ YH+H
Sbjct: 99 VTQCPILPGETFTYEFVVDRPGTYLYHAH 127
>gnl|CDD|177843 PLN02191, PLN02191, L-ascorbate oxidase.
Length = 574
Score = 100 bits (249), Expect = 9e-26
Identities = 41/89 (46%), Positives = 53/89 (59%)
Query: 22 DGFERAILSINRQLPGPSIQVCKGDTIIVDVKNHMIDREVTLHWHGVYQKVTPWMDGVPM 81
D E A++++N Q PGP+I GDTI+V + N + + +HWHG+ QK +PW DG
Sbjct: 38 DCKEGAVMTVNGQFPGPTIDAVAGDTIVVHLTNKLTTEGLVIHWHGIRQKGSPWADGAAG 97
Query: 82 VTQCPIPSSTTFRYKFPAMPSGTFFYHSH 110
VTQC I TF YKF GT FYH H
Sbjct: 98 VTQCAINPGETFTYKFTVEKPGTHFYHGH 126
>gnl|CDD|234194 TIGR03389, laccase, laccase, plant. Members of this protein family
include the copper-containing enzyme laccase (EC
1.10.3.2), often several from a single plant species,
and additional, uncharacterized, closely related plant
proteins termed laccase-like multicopper oxidases. This
protein family shows considerable sequence similarity to
the L-ascorbate oxidase (EC 1.10.3.3) family. Laccases
are enzymes of rather broad specificity, and
classification of all proteins scoring about the trusted
cutoff of this model as laccases may be appropriate.
Length = 539
Score = 91.7 bits (228), Expect = 8e-23
Identities = 35/86 (40%), Positives = 54/86 (62%), Gaps = 2/86 (2%)
Query: 26 RAILSINRQLPGPSIQVCKGDTIIVDVKNHMIDREVTLHWHGVYQKVTPWMDGVPMVTQC 85
++IL++N + PGP++ +GDT+IV+V N+ + VT+HWHGV Q W DG +TQC
Sbjct: 22 KSILTVNGKFPGPTLYAREGDTVIVNVTNN-VQYNVTIHWHGVRQLRNGWADGPAYITQC 80
Query: 86 PIPSSTTFRYKFP-AMPSGTFFYHSH 110
PI ++ Y F GT ++H+H
Sbjct: 81 PIQPGQSYVYNFTITGQRGTLWWHAH 106
>gnl|CDD|225043 COG2132, SufI, Putative multicopper oxidases [Secondary metabolites
biosynthesis, transport, and catabolism].
Length = 451
Score = 86.0 bits (213), Expect = 7e-21
Identities = 37/99 (37%), Positives = 53/99 (53%), Gaps = 3/99 (3%)
Query: 14 RRKGCVTADGFERAILSINRQLPGPSIQVCKGDTIIVDVKNHMIDREVTLHWHGVYQKVT 73
+R A G + N LPGP+I+V KGDT+ +D+ N ++ + ++HWHG+ V
Sbjct: 40 QRAQLAFAPGTGATVWGYNGALPGPTIRVKKGDTVTLDLTNRLLV-DTSVHWHGL--PVP 96
Query: 74 PWMDGVPMVTQCPIPSSTTFRYKFPAMPSGTFFYHSHVD 112
MDGVP +TQ P T Y F GT++YH H
Sbjct: 97 GEMDGVPPLTQIPPGPGETPTYTFTQDVPGTYWYHPHTH 135
Score = 31.7 bits (72), Expect = 0.084
Identities = 10/59 (16%), Positives = 16/59 (27%), Gaps = 6/59 (10%)
Query: 54 NHMIDREVTLHWHGVYQKVTPWMDGVPMVTQCPIPSSTTFRYKFPAMPSGTFFYHSHVD 112
H +V W D V + +F A G + +H H+
Sbjct: 383 LHGHFFQVLSGDAPAPGAAPGWKDTVLV------APGERLLVRFDADYPGPWMFHCHIL 435
>gnl|CDD|132431 TIGR03390, ascorbOXfungal, L-ascorbate oxidase, fungal type. This
model describes a family of fungal ascorbate oxidases,
within a larger family of multicopper oxidases that also
includes plant ascorbate oxidases (TIGR03388), plant
laccases and laccase-like proteins (TIGR03389), and
related proteins. The member from Acremonium sp. HI-25
is characterized.
Length = 538
Score = 83.0 bits (205), Expect = 1e-19
Identities = 36/90 (40%), Positives = 53/90 (58%), Gaps = 2/90 (2%)
Query: 25 ERAILSINRQLPGPSIQVCKGDTIIVDVKNHMIDREVTLHWHGVYQKVTPWMDGVPMVTQ 84
R + +N PGP I++ +G T + V N + D VT+HWHG+ Q+ P+ DG P+ +Q
Sbjct: 26 SRYSVVVNGTSPGPEIRLQEGQTTWIRVYNDIPDNNVTMHWHGLTQRTAPFSDGTPLASQ 85
Query: 85 CPIPSSTTFRYKFPAMP--SGTFFYHSHVD 112
PIP F Y+ P +G++FYHSHV
Sbjct: 86 WPIPPGHFFDYEIKPEPGDAGSYFYHSHVG 115
>gnl|CDD|177987 PLN02354, PLN02354, copper ion binding / oxidoreductase.
Length = 552
Score = 74.4 bits (183), Expect = 9e-17
Identities = 35/93 (37%), Positives = 51/93 (54%), Gaps = 3/93 (3%)
Query: 17 GCVTADGFERAILSINRQLPGPSIQVCKGDTIIVDVKNHMIDREVTLHWHGVYQKVTPWM 76
G + G + ++ IN Q PGP+I + I+++V N+ +D L W G+ Q+ W
Sbjct: 37 GTASPLGVPQQVILINGQFPGPNINSTSNNNIVINVFNN-LDEPFLLTWSGIQQRKNSWQ 95
Query: 77 DGVPMVTQCPIPSSTTFRYKF-PAMPSGTFFYH 108
DGVP T CPIP T F Y F P G++FY+
Sbjct: 96 DGVPG-TNCPIPPGTNFTYHFQPKDQIGSYFYY 127
>gnl|CDD|233432 TIGR01480, copper_res_A, copper-resistance protein, CopA family.
This model represents the CopA copper resistance protein
family. CopA is related to laccase (benzenediol:oxygen
oxidoreductase) and L-ascorbate oxidase, both
copper-containing enzymes. Most members have a typical
TAT (twin-arginine translocation) signal sequence with
an Arg-Arg pair. Twin-arginine translocation is observed
for a large number of periplasmic proteins that cross
the inner membrane with metal-containing cofactors
already bound. The combination of copper-binding sites
and TAT translocation motif suggests a mechansism of
resistance by packaging and export [Cellular processes,
Detoxification, Transport and binding proteins, Cations
and iron carrying compounds].
Length = 587
Score = 73.8 bits (181), Expect = 2e-16
Identities = 36/93 (38%), Positives = 56/93 (60%), Gaps = 5/93 (5%)
Query: 19 VTADGFERAILSINRQLPGPSIQVCKGDTIIVDVKNHMIDREVTLHWHGVYQKVTPW-MD 77
V G R +++N +PGP ++ +GDT+ + V N + + ++HWHG+ + P+ MD
Sbjct: 57 VNFTGRARPAITVNGSIPGPLLRWREGDTVRLRVTN-TLPEDTSIHWHGI---LLPFQMD 112
Query: 78 GVPMVTQCPIPSSTTFRYKFPAMPSGTFFYHSH 110
GVP V+ I TF Y+FP SGT++YHSH
Sbjct: 113 GVPGVSFAGIAPGETFTYRFPVRQSGTYWYHSH 145
>gnl|CDD|178429 PLN02835, PLN02835, oxidoreductase.
Length = 539
Score = 68.8 bits (168), Expect = 9e-15
Identities = 34/92 (36%), Positives = 52/92 (56%), Gaps = 3/92 (3%)
Query: 17 GCVTADGFERAILSINRQLPGPSIQVCKGDTIIVDVKNHMIDREVTLHWHGVYQKVTPWM 76
G ++ G + ++ IN Q PGP + V D II+++ N + D+ L W+G+ Q+ W
Sbjct: 39 GTISPLGVPQQVILINGQFPGPRLDVVTNDNIILNLINKL-DQPFLLTWNGIKQRKNSWQ 97
Query: 77 DGVPMVTQCPIPSSTTFRYKFPAMPS-GTFFY 107
DGV + T CPIP ++ + YKF GTF Y
Sbjct: 98 DGV-LGTNCPIPPNSNYTYKFQTKDQIGTFTY 128
>gnl|CDD|165622 PLN00044, PLN00044, multi-copper oxidase-related protein;
Provisional.
Length = 596
Score = 67.4 bits (164), Expect = 3e-14
Identities = 31/84 (36%), Positives = 48/84 (57%), Gaps = 3/84 (3%)
Query: 25 ERAILSINRQLPGPSIQVCKGDTIIVDVKNHMIDREVTLHWHGVYQKVTPWMDGVPMVTQ 84
++ + IN Q PGP++ V ++V+V+N + D + L WHGV Q+ + W DGV T
Sbjct: 47 KQEAIGINGQFPGPALNVTTNWNLVVNVRNAL-DEPLLLTWHGVQQRKSAWQDGV-GGTN 104
Query: 85 CPIPSSTTFRYKFPAMPS-GTFFY 107
C IP+ + Y+F G+FFY
Sbjct: 105 CAIPAGWNWTYQFQVKDQVGSFFY 128
>gnl|CDD|178389 PLN02792, PLN02792, oxidoreductase.
Length = 536
Score = 58.8 bits (142), Expect = 3e-11
Identities = 30/92 (32%), Positives = 46/92 (50%), Gaps = 3/92 (3%)
Query: 17 GCVTADGFERAILSINRQLPGPSIQVCKGDTIIVDVKNHMIDREVTLHWHGVYQKVTPWM 76
G ++ R + IN Q PGP I+ D ++++V N + D L W+GV+ + +
Sbjct: 26 GNISLLTLPRRGILINGQFPGPEIRSLTNDNLVINVHNDL-DEPFLLSWNGVHMRKNSYQ 84
Query: 77 DGVPMVTQCPIPSSTTFRYKFPAMPS-GTFFY 107
DGV T CPIP + Y F G++FY
Sbjct: 85 DGV-YGTTCPIPPGKNYTYDFQVKDQVGSYFY 115
>gnl|CDD|236810 PRK10965, PRK10965, multicopper oxidase; Provisional.
Length = 523
Score = 55.4 bits (134), Expect = 4e-10
Identities = 26/81 (32%), Positives = 40/81 (49%), Gaps = 7/81 (8%)
Query: 31 INRQLPGPSIQVCKGDTIIVDVKNHMIDREVTLHWHGVYQKVTPWMDGVPMVTQCPIPSS 90
N L GP++++ +G + VD+ N + E TLHWHG+ +V +DG P Q I
Sbjct: 70 YNGNLLGPAVRLQRGKAVTVDITNQL-PEETTLHWHGL--EVPGEVDGGP---QGIIAPG 123
Query: 91 TTFRYKF-PAMPSGTFFYHSH 110
F P+ T ++H H
Sbjct: 124 GKRTVTFTVDQPAATCWFHPH 144
>gnl|CDD|215113 PLN02168, PLN02168, copper ion binding / pectinesterase.
Length = 545
Score = 52.3 bits (125), Expect = 7e-09
Identities = 26/86 (30%), Positives = 43/86 (50%), Gaps = 3/86 (3%)
Query: 23 GFERAILSINRQLPGPSIQVCKGDTIIVDVKNHMIDREVTLHWHGVYQKVTPWMDGVPMV 82
G + ++ IN PGP + D I V++ N++ + + W+G+ + W DGV
Sbjct: 42 GGNKQVIVINDMFPGPLLNATANDVINVNIFNNLTE-PFLMTWNGLQLRKNSWQDGV-RG 99
Query: 83 TQCPIPSSTTFRYKFPAMPS-GTFFY 107
T CPI T + Y+F G++FY
Sbjct: 100 TNCPILPGTNWTYRFQVKDQIGSYFY 125
>gnl|CDD|215536 PLN02991, PLN02991, oxidoreductase.
Length = 543
Score = 49.2 bits (117), Expect = 6e-08
Identities = 28/84 (33%), Positives = 41/84 (48%), Gaps = 4/84 (4%)
Query: 25 ERAILSINRQLPGPSIQVCKGDTIIVDVKNHMIDREVTLHWHGVYQKVTPWMDGVPMVTQ 84
++ IL IN + PGP I D +I++V NH+ D + W G+ + DGV T
Sbjct: 47 QQGIL-INGKFPGPDIISVTNDNLIINVFNHL-DEPFLISWSGIRNWRNSYQDGV-YGTT 103
Query: 85 CPIPSSTTFRYKFPAMPS-GTFFY 107
CPIP + Y G+F+Y
Sbjct: 104 CPIPPGKNYTYALQVKDQIGSFYY 127
>gnl|CDD|131429 TIGR02376, Cu_nitrite_red, nitrite reductase, copper-containing.
This family consists of copper-type nitrite reductase.
It reduces nitrite to nitric oxide, the first step in
denitrification [Central intermediary metabolism,
Nitrogen metabolism].
Length = 311
Score = 32.4 bits (74), Expect = 0.037
Identities = 24/94 (25%), Positives = 39/94 (41%), Gaps = 20/94 (21%)
Query: 22 DGFERAILSINRQLPGPSIQVCKGDTIIVDVKN-------HMIDREVTLHWHGVYQKVTP 74
DG ++ + +PGP I+V +GD + + + N H +D + T
Sbjct: 43 DGVTYQAMTFDGSVPGPLIRVHEGDYVELTLINPPTNTMPHNVD----------FHAATG 92
Query: 75 WMDGVPMVTQCPIPSSTTFRYKFPAMPSGTFFYH 108
+ G + TQ + T R+K A G F YH
Sbjct: 93 ALGGAAL-TQVNPGETATLRFK--ATRPGAFVYH 123
>gnl|CDD|219541 pfam07731, Cu-oxidase_2, Multicopper oxidase. This entry contains
many divergent copper oxidase-like domains that are not
recognised by the pfam00394 model.
Length = 135
Score = 29.0 bits (65), Expect = 0.39
Identities = 21/114 (18%), Positives = 33/114 (28%), Gaps = 27/114 (23%)
Query: 19 VTADGFERAILSINRQLPGPS--IQVCKGDTIIVDVKNHMIDREVTLHWHGV-------- 68
+T N G + I + GD + + ++N+ H HG
Sbjct: 12 ITGGNDRANWSPDNGPPLGTTEVITLPNGDRVEIVLQNN-TMGPHPFHLHGHSFQVLGRG 70
Query: 69 ---------YQKVTP-WMDGVPMVTQCPIPSSTTFRYKFPAMPSGTFFYHSHVD 112
Y V P D Q P R+K G + +H H+
Sbjct: 71 GGPWTPTATYNLVDPVRRD----TVQVPPGGWVAIRFKADN--PGPWLFHCHIL 118
>gnl|CDD|235728 PRK06184, PRK06184, hypothetical protein; Provisional.
Length = 502
Score = 28.0 bits (63), Expect = 1.2
Identities = 24/81 (29%), Positives = 36/81 (44%), Gaps = 18/81 (22%)
Query: 19 VTADG---FERAILSINRQLPGPSIQVCKGDTIIVDVKNHMIDREVTLHWHGVYQKVTPW 75
V ADG F R L I PG ++ + ++ DV +DR+ WH W
Sbjct: 161 VGADGGRSFVRKALGIG--FPGETLGI--DRMLVADVSLTGLDRDA---WH-------QW 206
Query: 76 MDG-VPMVTQCPIPSSTTFRY 95
DG + M+ CP+P + F+
Sbjct: 207 PDGDMGMIALCPLPGTDLFQI 227
>gnl|CDD|191924 pfam07999, RHSP, Retrotransposon hot spot protein. Members of this
family are retrotransposon hot spot proteins. They are
associated with polymorphic subtelomeric regions in
Trypanosoma. These proteins contain a P-loop motif.
Length = 439
Score = 26.1 bits (57), Expect = 7.4
Identities = 9/30 (30%), Positives = 12/30 (40%)
Query: 57 IDREVTLHWHGVYQKVTPWMDGVPMVTQCP 86
I REV W V ++T W+ P
Sbjct: 97 IRREVDRVWQIVKGRLTEWLSSRLEDHFTP 126
>gnl|CDD|132407 TIGR03364, HpnW_proposed, FAD dependent oxidoreductase TIGR03364.
This clade of FAD dependent oxidoreductases (members of
the pfam01266 family) is syntenically associated with a
family of proposed phosphonatase-like enzymes
(TIGR03351) and is also found (less frequently) in
association with phosphonate transporter components. A
likely role for this enzyme involves the oxidative
deamination of an aminophosphonate differring slightly
from 2-aminoethylphosphonate, possibly
1-hydroxy-2-aminoethylphosphonate (see the comments for
TIGR03351). Many members of the larger FAD dependent
oxidoreductase family act as amino acid oxidative
deaminases.
Length = 365
Score = 25.7 bits (57), Expect = 9.2
Identities = 8/51 (15%), Positives = 16/51 (31%), Gaps = 14/51 (27%)
Query: 51 DVKNHMIDR----------EVTLHWHGVYQKVTPWMDGVPMVTQCPIPSST 91
++ N ++ ++ W GVY P+ + P T
Sbjct: 300 EIDNLILAEAKTILGLPDLDIVERWQGVYAS----SPPAPIFLERPDDGVT 346
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.323 0.138 0.460
Gapped
Lambda K H
0.267 0.0580 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 6,368,325
Number of extensions: 531787
Number of successful extensions: 431
Number of sequences better than 10.0: 1
Number of HSP's gapped: 412
Number of HSP's successfully gapped: 23
Length of query: 127
Length of database: 10,937,602
Length adjustment: 85
Effective length of query: 42
Effective length of database: 7,167,512
Effective search space: 301035504
Effective search space used: 301035504
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 53 (24.5 bits)