RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy16567
(127 letters)
>1aoz_A Ascorbate oxidase; oxidoreductase(oxygen acceptor); HET: NAG; 1.90A
{Cucurbita pepo var} SCOP: b.6.1.3 b.6.1.3 b.6.1.3 PDB:
1aso_A* 1asp_A* 1asq_A*
Length = 552
Score = 168 bits (428), Expect = 4e-51
Identities = 37/94 (39%), Positives = 54/94 (57%)
Query: 19 VTADGFERAILSINRQLPGPSIQVCKGDTIIVDVKNHMIDREVTLHWHGVYQKVTPWMDG 78
+ E ++ IN Q PGP+I+ GD+++V++ N + V +HWHG+ Q+ TPW DG
Sbjct: 15 WAPNCNENIVMGINGQFPGPTIRANAGDSVVVELTNKLHTEGVVIHWHGILQRGTPWADG 74
Query: 79 VPMVTQCPIPSSTTFRYKFPAMPSGTFFYHSHVD 112
++QC I TF Y F GTFFYH H+
Sbjct: 75 TASISQCAINPGETFFYNFTVDNPGTFFYHGHLG 108
>3sqr_A Laccase; multicopper oxidase, glycosylation, oxidoreductase; HET:
NAG BMA MAN; 1.67A {Botrytis aclada}
Length = 580
Score = 159 bits (404), Expect = 2e-47
Identities = 39/96 (40%), Positives = 55/96 (57%)
Query: 17 GCVTADGFERAILSINRQLPGPSIQVCKGDTIIVDVKNHMIDREVTLHWHGVYQKVTPWM 76
+T DG+ R+ ++ N +PGP+I GD +I+ V N++ ++HWHG+ Q +
Sbjct: 77 STITPDGYTRSAMTFNGTVPGPAIIADWGDNLIIHVTNNLEHNGTSIHWHGIRQLGSLEY 136
Query: 77 DGVPMVTQCPIPSSTTFRYKFPAMPSGTFFYHSHVD 112
DGVP VTQCPI T YKF GT +YHSH
Sbjct: 137 DGVPGVTQCPIAPGDTLTYKFQVTQYGTTWYHSHFS 172
>3t6v_A Laccase; beta barrel, oxidoreductase; HET: CBS; 2.00A {Steccherinum
ochraceum} PDB: 3t6w_A* 3t6x_A* 3t6z_A* 3t71_A*
Length = 495
Score = 157 bits (400), Expect = 2e-47
Identities = 36/101 (35%), Positives = 52/101 (51%), Gaps = 5/101 (4%)
Query: 17 GCVTADGFERAILSINRQLPGPSIQVCKGDTIIVDVKNHMID----REVTLHWHGVYQKV 72
+ DGF R ++ PGP I GD + N +I+ + ++HWHG +QK
Sbjct: 14 ADIVPDGFVRPAVNAGGTFPGPVIAGNVGDNFQIVTFNQLIECSMLVDTSIHWHGEFQKG 73
Query: 73 TPWMDGVPMVTQCPIPSSTTFRYKFPAMP-SGTFFYHSHVD 112
T W DG +TQCPI +F Y F +GT++YHSH+
Sbjct: 74 TNWADGPAFITQCPIIVGNSFSYNFNVPGMAGTYWYHSHLT 114
>3pxl_A Laccase; 4-copper protein, metal-binding, oxidoreductase, type-2
Cu-D; HET: NAG BMA MAN; 1.20A {Trametes hirsuta} PDB:
3fpx_A* 3v9c_A* 3div_A* 2h5u_A* 2xyb_A* 1kya_A* 1gyc_A*
2qt6_A* 2hrg_A* 2hrh_A* 4a2f_A* 2vdz_A* 4a2d_A* 4a2e_A*
4a2g_A* 4a2h_A* 2ve0_A* 2vds_A* 2hzh_A* 3kw7_A*
Length = 499
Score = 157 bits (400), Expect = 2e-47
Identities = 35/101 (34%), Positives = 53/101 (52%), Gaps = 5/101 (4%)
Query: 17 GCVTADGFERAILSINRQLPGPSIQVCKGDTIIVDVKNHMIDRE----VTLHWHGVYQKV 72
V+ DGF R + +N PGP + GD ++V +++ + ++HWHG +Q
Sbjct: 13 AAVSPDGFSRQAVVVNGVTPGPLVAGNIGDRFQLNVIDNLTNHTMLKSTSIHWHGFFQHG 72
Query: 73 TPWMDGVPMVTQCPIPSSTTFRYKFPAM-PSGTFFYHSHVD 112
T W DG + QCPI +F Y F +GTF+YHSH+
Sbjct: 73 TNWADGPAFINQCPISPGHSFLYDFQVPDQAGTFWYHSHLS 113
>2zwn_A Two-domain type laccase; muticopper oxidase, oxidoreductase; 1.70A
{Metagenomes}
Length = 339
Score = 153 bits (388), Expect = 5e-47
Identities = 43/92 (46%), Positives = 57/92 (61%), Gaps = 1/92 (1%)
Query: 21 ADGFERAILSINRQLPGPSIQVCKGDTIIVDVKNHMIDREVTLHWHGVYQKVTPWMDGVP 80
A G + + N Q+PGP I V +GD +IV+V N+ T+HWHGV+QK T DGVP
Sbjct: 18 APGLDYKVFGFNGQVPGPLIHVQEGDDVIVNVTNNT-SLPHTIHWHGVHQKGTWRSDGVP 76
Query: 81 MVTQCPIPSSTTFRYKFPAMPSGTFFYHSHVD 112
VTQ PI + ++ YKF A GT +YH HV+
Sbjct: 77 GVTQQPIEAGDSYTYKFKADRIGTLWYHCHVN 108
>3g5w_A Multicopper oxidase type 1; two domain, laccase, nitrifier, metal B
protein; 1.90A {Nitrosomonas europaea}
Length = 318
Score = 152 bits (385), Expect = 8e-47
Identities = 38/92 (41%), Positives = 50/92 (54%), Gaps = 1/92 (1%)
Query: 21 ADGFERAILSINRQLPGPSIQVCKGDTIIVDVKNHMIDREVTLHWHGVYQKVTPWMDGVP 80
+ + N Q+P P I V +GD + V+V N T+HWHG+ Q+ T DGVP
Sbjct: 17 VGKRDFHTFAFNGQVPAPLIHVMEGDDVTVNVTNMT-TLPHTIHWHGMLQRGTWQSDGVP 75
Query: 81 MVTQCPIPSSTTFRYKFPAMPSGTFFYHSHVD 112
TQ I TF YKF A P+GT +YH HV+
Sbjct: 76 HATQHAIEPGDTFTYKFKAEPAGTMWYHCHVN 107
>2q9o_A Laccase-1; multicopper oxidase, 2-OXOH oxidoreductase; HET: OHI NAG
MAN GOL; 1.30A {Melanocarpus albomyces} SCOP: b.6.1.3
b.6.1.3 b.6.1.3 PDB: 3fu7_A* 3fu8_A* 3fu7_B* 1gw0_A*
2ih9_A* 2ih8_A* 3fu9_A* 3qpk_A* 3dkh_A* 3pps_A*
Length = 559
Score = 156 bits (396), Expect = 2e-46
Identities = 36/98 (36%), Positives = 53/98 (54%), Gaps = 2/98 (2%)
Query: 17 GCVTADGF-ERAILSINRQLPGPSIQVCKGDTIIVDVKNHMIDREVTLHWHGVYQKVTPW 75
+ DG + ++ IN + GP+I GDT+ V V N+++ ++HWHG+ QK T
Sbjct: 45 NWMGPDGVVKEKVMLINGNIMGPNIVANWGDTVEVTVINNLVTNGTSIHWHGIXQKDTNL 104
Query: 76 MDGVPMVTQCPI-PSSTTFRYKFPAMPSGTFFYHSHVD 112
DG VT+CPI P Y++ A GT +YHSH
Sbjct: 105 HDGANGVTECPIPPKGGQRTYRWRARQYGTSWYHSHFS 142
>1zpu_A Iron transport multicopper oxidase FET3; ferroxidase, oxidoreduc;
HET: NAG BMA MAN NDG; 2.80A {Saccharomyces cerevisiae}
Length = 534
Score = 153 bits (388), Expect = 2e-45
Identities = 39/98 (39%), Positives = 56/98 (57%), Gaps = 2/98 (2%)
Query: 17 GCVTADGFE-RAILSINRQLPGPSIQVCKGDTIIVDVKNHMIDREVTLHWHGVYQKVTPW 75
DG + R +++ N Q P P I V KGD + + + N M + ++H+HG++Q T
Sbjct: 12 DYRNVDGLKSRPVITCNGQFPWPDITVNKGDRVQIYLTNGMNNTNTSMHFHGLFQNGTAS 71
Query: 76 MDGVPMVTQCPIPSSTTFRYKFPAMP-SGTFFYHSHVD 112
MDGVP +TQCPI +T Y F GT++YHSH D
Sbjct: 72 MDGVPFLTQCPIAPGSTMLYNFTVDYNVGTYWYHSHTD 109
>1v10_A Laccase; multicopper blue oxidase, oxidase; 1.7A {Rigidoporus
lignosus} SCOP: b.6.1.3 b.6.1.3 b.6.1.3
Length = 521
Score = 150 bits (381), Expect = 2e-44
Identities = 31/100 (31%), Positives = 48/100 (48%), Gaps = 6/100 (6%)
Query: 19 VTADGF-ERAILSINRQLPGPSIQVCKGDTIIVDVKNHMIDRE----VTLHWHGVYQKVT 73
+ DG R+ ++ P I D ++V + + D ++HWHG +Q T
Sbjct: 35 LDPDGTGARSAVTAEGTTIAPLITGNIDDRFQINVIDQLTDANMRRATSIHWHGFFQAGT 94
Query: 74 PWMDGVPMVTQCPIPSSTTFRYKFPAMP-SGTFFYHSHVD 112
MDG V QCPI + +F Y F +GT++YHSH+
Sbjct: 95 TEMDGPAFVNQCPIIPNESFVYDFVVPGQAGTYWYHSHLS 134
>1hfu_A Laccase 1; oxidoreductase, blue multi-copper oxidase, type-2 copper
depleted, signal, glycoprotein; HET: MAN NAG NDG; 1.68A
{Coprinus cinereus} SCOP: b.6.1.3 b.6.1.3 b.6.1.3 PDB:
1a65_A*
Length = 503
Score = 149 bits (379), Expect = 3e-44
Identities = 41/101 (40%), Positives = 56/101 (55%), Gaps = 6/101 (5%)
Query: 17 GCVTADGFERAILSINRQLPGPSIQVCKGDTIIVDVKNHMIDRE----VTLHWHGVYQKV 72
V+ DGF RA + +N GP I+ K D ++V N + + ++HWHG++Q+
Sbjct: 14 ANVSPDGFTRAGILVNGV-HGPLIRGGKNDNFELNVVNDLDNPTMLRPTSIHWHGLFQRG 72
Query: 73 TPWMDGVPMVTQCPIPSSTTFRYKF-PAMPSGTFFYHSHVD 112
T W DG V QCPI F YKF PA +GTF+YHSH
Sbjct: 73 TNWADGADGVNQCPISPGHAFLYKFTPAGHAGTFWYHSHFG 113
>3gdc_A Multicopper oxidase; beta sandwich, plasmid, oxidoreductase; 1.80A
{Arthrobacter SP}
Length = 288
Score = 112 bits (283), Expect = 7e-32
Identities = 30/92 (32%), Positives = 44/92 (47%), Gaps = 4/92 (4%)
Query: 21 ADGFERAILSINRQLPGPSIQVCKGDTIIVDVKNHMIDREVTLHWHGVYQKVTPWMDGVP 80
A G S N ++PGP++ +GD + + N T+H+HGV++ MDG P
Sbjct: 49 APGIIFKGWSYNGRIPGPTLWAREGDALRIHFTNAG-AHPHTIHFHGVHR---ATMDGTP 104
Query: 81 MVTQCPIPSSTTFRYKFPAMPSGTFFYHSHVD 112
+ I +F Y+F A P GT YH H
Sbjct: 105 GIGAGSIAPGQSFTYEFDATPFGTHLYHCHQS 136
>2xu9_A Laccase; oxidoreductase, multicopper oxidases; 1.50A {Thermus
thermophilus} PDB: 2xuw_A 2xvb_A 2yae_A 2yaf_A 2yah_A
2yam_A 2yao_A 2yap_A 2yaq_A 2yar_A 4ai7_A
Length = 439
Score = 105 bits (263), Expect = 4e-28
Identities = 26/94 (27%), Positives = 46/94 (48%), Gaps = 9/94 (9%)
Query: 19 VTADGFERAILSINRQLPGPSIQVCKGDTIIVDVKNHMIDREVTLHWHGVYQKVTPWMDG 78
+ G +L+ PGP+++V DT+ + ++N + LHWHG+ ++P +D
Sbjct: 28 LAIAGQRATLLTYGGSFPGPTLRVRPRDTVRLTLENRL-PEPTNLHWHGLP--ISPKVDD 84
Query: 79 VPMVTQCPIPSSTTFRYKFPAM--PSGTFFYHSH 110
IP ++ Y+F +GTF+YH H
Sbjct: 85 P----FLEIPPGESWTYEFTVPKELAGTFWYHPH 114
Score = 27.5 bits (61), Expect = 1.3
Identities = 14/87 (16%), Positives = 25/87 (28%), Gaps = 17/87 (19%)
Query: 36 PGPSIQVCKGDTIIVDVKNHMIDREVTLHWHGVYQKV----------TPWMDGVPMVTQC 85
++ + +V+N D + H H +V W D V
Sbjct: 346 RRVDLKGQAQTVEVWEVENQG-DMDHPFHLHVHPFQVLSVGGRPFPYRAWKDVVN----- 399
Query: 86 PIPSSTTFRYKFPAMPSGTFFYHSHVD 112
+ + R P G +H H+
Sbjct: 400 -LKAGEVARLLVPLREKGRTVFHCHIV 425
>3kw8_A Laccase, putative copper oxidase; two-domain laccase,
oxidoreductase, multicopper blue protein; HET: PG4 PGE;
2.29A {Streptomyces coelicolor}
Length = 276
Score = 93.9 bits (233), Expect = 1e-24
Identities = 24/107 (22%), Positives = 39/107 (36%), Gaps = 17/107 (15%)
Query: 19 VTADGFERAILSINRQLPGPSIQVCKGDTIIVDVKNHMIDREVTLHWHGVYQKVTPWMDG 78
+ +PGP I+V +GDT+ ++ N M D +LH HG+ DG
Sbjct: 17 LADGQMGYGFEKGKASVPGPLIEVNEGDTLHIEFTNTM-DVRASLHVHGL--DYEISSDG 73
Query: 79 VPMVTQCPIPSSTTFRYKFPA-------------MPSGTFFYHSHVD 112
+ + + T Y + +G + YH HV
Sbjct: 74 TA-MNKSDVEPGGTRTYTWRTHKPGRRDDGTWRPGSAGYWHYHDHVV 119
>3cg8_A Laccase; oxidoreductase, multicopper blue protein; HET: PG4; 2.68A
{Streptomyces coelicolor}
Length = 343
Score = 94.8 bits (235), Expect = 1e-24
Identities = 24/107 (22%), Positives = 39/107 (36%), Gaps = 17/107 (15%)
Query: 19 VTADGFERAILSINRQLPGPSIQVCKGDTIIVDVKNHMIDREVTLHWHGVYQKVTPWMDG 78
+ +PGP I+V +GDT+ ++ N M D +LH HG+ DG
Sbjct: 58 LADGQMGYGFEKGKASVPGPLIEVNEGDTLHIEFTNTM-DVRASLHVHGL--DYEISSDG 114
Query: 79 VPMVTQCPIPSSTTFRYKFPA-------------MPSGTFFYHSHVD 112
+ + + T Y + +G + YH HV
Sbjct: 115 TA-MNKSDVEPGGTRTYTWRTHKPGRRDDGTWRPGSAGYWHYHDHVV 160
>3zx1_A Oxidoreductase, putative; laccase, metallo-oxidase, cuprous
oxidase; 1.95A {Campylobacter jejuni subsp}
Length = 481
Score = 95.0 bits (236), Expect = 3e-24
Identities = 32/94 (34%), Positives = 46/94 (48%), Gaps = 8/94 (8%)
Query: 21 ADGFERAILSINRQLPGPSIQVCKGDTIIVDVKNHMIDREVTLHWHGVYQKVTPWMDGVP 80
G + + N +P P I+V +GD + + VKN + T+HWHGV V P DG P
Sbjct: 65 IKGKKTLFYTYNGLVPAPKIEVFEGDKLEILVKNKL-KEATTIHWHGVP--VPPDQDGSP 121
Query: 81 MVTQCPIPSSTTFRYKF--PAMPSGTFFYHSHVD 112
PI + Y+F P +GT++YH H
Sbjct: 122 ---HDPILAGEERIYRFEIPQDSAGTYWYHPHPH 152
Score = 33.4 bits (76), Expect = 0.011
Identities = 12/82 (14%), Positives = 24/82 (29%), Gaps = 9/82 (10%)
Query: 38 PSIQVCKGDTIIVDVKNHMIDREVTLHWHGVY-QKVTPWMDGVPMVTQCP-------IPS 89
+ G V N + H HG + ++ ++G + +
Sbjct: 385 IDLSSKLGVVEDWIVINKS-HMDHPFHIHGTQFELISSKLNGKVQKAEFRALRDTINVRP 443
Query: 90 STTFRYKFPAMPSGTFFYHSHV 111
+ R + G YH H+
Sbjct: 444 NEELRLRMKQDFKGLRMYHCHI 465
>3od3_A Blue copper oxidase CUEO; multicopper oxidase, Cu(I) oxidase,
oxidoreductase; 1.10A {Escherichia coli} PDB: 1n68_A
2fqd_A* 2fqe_A* 2fqf_A* 2fqg_A* 3nsd_A 1kv7_A 3pau_A
3pav_A 3nsf_A 1pf3_A 3qqx_A 3nsc_A 3nt0_A 3uad_A 3uaa_A
3uac_A 3uab_A 3uae_A 3nsy_A ...
Length = 488
Score = 94.6 bits (235), Expect = 5e-24
Identities = 29/97 (29%), Positives = 42/97 (43%), Gaps = 7/97 (7%)
Query: 15 RKGCVTADGFERAILSINRQLPGPSIQVCKGDTIIVDVKNHMIDREVTLHWHGVYQKVTP 74
G T G N L GP++++ +G + VD+ N + E TLHWHG+ V
Sbjct: 25 GAGQSTFGGKTATTWGYNGNLLGPAVKLQRGKAVTVDIYNQL-TEETTLHWHGLE--VPG 81
Query: 75 WMDGVPMVTQCPIPSSTTFRYKFPAM-PSGTFFYHSH 110
+DG P Q IP P+ T ++H H
Sbjct: 82 EVDGGP---QGIIPPGGKRSVTLNVDQPAATCWFHPH 115
Score = 32.6 bits (74), Expect = 0.024
Identities = 16/96 (16%), Positives = 25/96 (26%), Gaps = 18/96 (18%)
Query: 31 INRQ---LPGPSIQVCKGDTIIVDVKNHMIDREVTLHWHGVYQKV------------TPW 75
IN Q + P KG + H HG ++ W
Sbjct: 382 INGQAFDMNKPMFAAAKGQYERWVISGVGDMMLHPFHIHGTQFRILSENGKPPAAHRAGW 441
Query: 76 MDGVPMVTQCPIPSSTTFRYKFPAMPSGTFFYHSHV 111
D V + S ++ A + H H+
Sbjct: 442 KDTVKVE---GNVSEVLVKFNHDAPKEHAYMAHCHL 474
>3aw5_A Multicopper oxidase; beta barrel, oxidoreductase; 2.00A
{Pyrobaculum aerophilum}
Length = 448
Score = 93.4 bits (232), Expect = 1e-23
Identities = 20/82 (24%), Positives = 34/82 (41%), Gaps = 7/82 (8%)
Query: 32 NRQLPGPSIQVCKGDTIIVDVKNHMIDREVTLHWHGVYQKVTPWMDGVPMVTQCPIPSST 91
+ P+I + +G + + +KN + +HWHG V D P I
Sbjct: 32 AEGVLNPTIILRRGQRVDMTLKNKL-TEPTIVHWHGFD--VNWHNDAHP---SFAITPGE 85
Query: 92 TFRYKFPAM-PSGTFFYHSHVD 112
++ Y F + +GT+ YH H
Sbjct: 86 SYNYSFDVVNRAGTYLYHPHPH 107
>3abg_A Bilirubin oxidase; cleavage on PAIR of basic residues, glyco
metal-binding, oxidoreductase; HET: NAG BMA NDG; 2.30A
{Myrothecium verrucaria} PDB: 2xll_A*
Length = 534
Score = 92.7 bits (230), Expect = 2e-23
Identities = 20/91 (21%), Positives = 36/91 (39%), Gaps = 7/91 (7%)
Query: 22 DGFERAILSINRQLPGPSIQVCKGDTIIVDVKNHMIDREVTLHWHGVYQKVTPWMDGVPM 81
D ++ + PGP+ QV +G +V N+ + ++H HG + DG
Sbjct: 53 DLGSADLVGYDGMSPGPTFQVPRGVETVVRFINNA-EAPNSVHLHGSF--SRAAFDGWA- 108
Query: 82 VTQCPIPSSTTFRYKFP-AMPSGTFFYHSHV 111
+ + Y +P + T +YH H
Sbjct: 109 --EDITEPGSFKDYYYPNRQSARTLWYHDHA 137
Score = 28.0 bits (62), Expect = 0.89
Identities = 16/86 (18%), Positives = 21/86 (24%), Gaps = 11/86 (12%)
Query: 38 PSIQVCKGDTIIVDVKNHMIDREVTLHWHGVYQKVTPWMDGVPMVTQCPI---------- 87
V G ++ N +H H V KV G T P
Sbjct: 375 LLANVPVGTVERWELINAGNGWTHPIHIHLVDFKVISRTSGNNARTVMPYESGLKDVVWL 434
Query: 88 -PSSTTFRYKFPAMPSGTFFYHSHVD 112
T A G + +H H
Sbjct: 435 GRRETVVVEAHYAPFPGVYMFHCHNL 460
>2zoo_A Probable nitrite reductase; electron transfer, electron transport,
heme, iron, binding, oxidoreductase, transport; HET: SUC
HEM; 1.95A {Pseudoalteromonas haloplanktis}
Length = 442
Score = 85.3 bits (211), Expect = 9e-21
Identities = 22/93 (23%), Positives = 31/93 (33%), Gaps = 8/93 (8%)
Query: 21 ADGFERAILSINRQLPGPSIQVCKGDTIIVDVKNHM-IDREVTLHWHGVYQKVTPWMDGV 79
ADG E S +PG I+V +GD I ++ NH + H V
Sbjct: 43 ADGVEYVFWSFGETVPGSFIRVREGDEIEFNLSNHPSSKMPHNIDLHAV-------TGPG 95
Query: 80 PMVTQCPIPSSTTFRYKFPAMPSGTFFYHSHVD 112
T + F A+ G + YH
Sbjct: 96 GGAESSFTAPGHTSTFNFKALNPGLYIYHCATA 128
Score = 34.9 bits (80), Expect = 0.004
Identities = 15/87 (17%), Positives = 29/87 (33%), Gaps = 6/87 (6%)
Query: 33 RQLPGPS-IQVCKGDTIIVDVKNHMIDREVTLHWHGVYQKVTPWMDGVPM----VTQCPI 87
+ + G+T+ + + N + + H G +++G + V I
Sbjct: 198 GSTTDENSLTAKVGETVRLYIGNGGPNLVSSFHVIGEIFDTV-YVEGGSLKNHNVQTTLI 256
Query: 88 PSSTTFRYKFPAMPSGTFFYHSHVDRR 114
P+ +F GTF H R
Sbjct: 257 PAGGAAIVEFKVEVPGTFILVDHSIFR 283
>2uxt_A Protein SUFI, SUFI; oxidoreductase, periplasmic, cupredoxin-like,
FTS mutant suppressor; 1.90A {Escherichia coli} PDB:
2uxv_A
Length = 451
Score = 82.0 bits (202), Expect = 1e-19
Identities = 20/93 (21%), Positives = 39/93 (41%), Gaps = 7/93 (7%)
Query: 21 ADGFERAILSINRQLPGPSIQVCKGDTIIVDVKNHMIDREVTLHWHGVYQKVTPWMDGVP 80
G ++ IN + GP+I+V KGD + + N + V++ G+ V + G P
Sbjct: 33 TPGTRASVWGINGRYLGPTIRVWKGDDVKLIYSNR-LTENVSMTVAGLQ--VPGPLMGGP 89
Query: 81 MVTQCPIPSSTTFRYKFPAM-PSGTFFYHSHVD 112
+ + + P + T +YH++
Sbjct: 90 ---ARMMSPNADWAPVLPIRQNAATLWYHANTP 119
Score = 31.9 bits (72), Expect = 0.041
Identities = 10/82 (12%), Positives = 20/82 (24%), Gaps = 11/82 (13%)
Query: 38 PSIQVCKGDTIIVDVKNHMIDREVTLHWHGVYQKV-------TPWMDGVPMVTQCPIPSS 90
+ +G V+ H GV ++ D T
Sbjct: 347 IDVTAQQGTWERWTVRADE---PQAFHIEGVMFQIRNVNGAMPFPEDRGWKDTVWVDGQV 403
Query: 91 T-TFRYKFPAMPSGTFFYHSHV 111
+ P+ F+++S
Sbjct: 404 ELLVYFGQPSWAHFPFYFNSQT 425
>2r7e_A Coagulation factor VIII; ceruloplasmin fold, cupper protein fold,
C2 domain fold, ACU blood coagulation, disease mutation,
glycoprotein; HET: NAG BMA MAN; 3.70A {Homo sapiens}
PDB: 3cdz_A*
Length = 742
Score = 80.5 bits (197), Expect = 6e-19
Identities = 24/108 (22%), Positives = 39/108 (36%), Gaps = 16/108 (14%)
Query: 20 TADGF-ERAILSINRQLPGPSIQVCKGDTIIVDVKNHMIDREVTLHWHGVYQ----KVTP 74
T + F R + + GP + GDT+++ KN R ++ HG+
Sbjct: 433 TDETFKTREAIQHESGILGPLLYGEVGDTLLIIFKNQA-SRPYNIYPHGITDVRPLYSRR 491
Query: 75 WMDGVPMVTQCPIPSSTTFRYKFPA----------MPSGTFFYHSHVD 112
GV + PI F+YK+ T +Y S V+
Sbjct: 492 LPKGVKHLKDFPILPGEIFKYKWTVTVEDGPTKSDPRCLTRYYSSFVN 539
Score = 74.7 bits (182), Expect = 6e-17
Identities = 22/94 (23%), Positives = 34/94 (36%), Gaps = 17/94 (18%)
Query: 35 LPGPSIQVCKGDTIIVDVKNHMIDREVTLHWHGVYQKV----TPWMDGVPMVTQC--PIP 88
L GP+IQ DT+++ +KN V+LH GV + D + +
Sbjct: 72 LLGPTIQAEVYDTVVITLKNMA-SHPVSLHAVGVSYWKASEGAEYDDQTSQREKEDDKVF 130
Query: 89 SSTTFRYKFPA----------MPSGTFFYHSHVD 112
+ Y + T+ Y SHVD
Sbjct: 131 PGGSHTYVWQVLKENGPMASDPLCLTYSYLSHVD 164
Score = 32.7 bits (73), Expect = 0.023
Identities = 13/76 (17%), Positives = 20/76 (26%), Gaps = 6/76 (7%)
Query: 38 PSIQVCKGDTIIVDVKNHMIDREV-TLHWHGVYQKVTPWMDGVPMVTQCPIPSSTTFRYK 96
P + C ++ V EV ++ G V I T +
Sbjct: 244 PGLIGCHRKSVYWHVIGMGTTPEVHSIFLEGHTFLVRNHRQASL-----EISPITFLTAQ 298
Query: 97 FPAMPSGTFFYHSHVD 112
M G F H+
Sbjct: 299 TLLMDLGQFLLFCHIS 314
>1kbv_A ANIA, major outer membrane protein PAN 1; ANIA[NO2-],
oxidoreductase; 1.95A {Neisseria gonorrhoeae} SCOP:
b.6.1.3 b.6.1.3 PDB: 1kbw_A
Length = 327
Score = 78.4 bits (193), Expect = 1e-18
Identities = 20/92 (21%), Positives = 32/92 (34%), Gaps = 6/92 (6%)
Query: 21 ADGFERAILSINRQLPGPSIQVCKGDTIIVDVKNHMIDREVTLHWHGVYQKVTPWMDGVP 80
DG E + + +PG I+V +GDT+ V+ N+ H +
Sbjct: 53 DDGVEYRYWTFDGDVPGRMIRVREGDTVEVEFSNN--PSSTVPHNVDFHAA----TGQGG 106
Query: 81 MVTQCPIPSSTTFRYKFPAMPSGTFFYHSHVD 112
T + F A+ G + YH V
Sbjct: 107 GAAATFTAPGRTSTFSFKALQPGLYIYHCAVA 138
Score = 28.3 bits (63), Expect = 0.77
Identities = 13/79 (16%), Positives = 29/79 (36%), Gaps = 5/79 (6%)
Query: 40 IQVCKGDTIIVDVKNHMIDREVTLHWHGVYQKVTPWMDGVPM----VTQCPIPSSTTFRY 95
++ G+T+ + V N + + H G +++G + V +P+ +
Sbjct: 216 LKAKAGETVRMYVGNGGPNLVSSFHVIGEIFDKV-YVEGGKLINENVQSTIVPAGGSAIV 274
Query: 96 KFPAMPSGTFFYHSHVDRR 114
+F G + H R
Sbjct: 275 EFKVDIPGNYTLVDHSIFR 293
>2bw4_A Copper-containing nitrite reductase; oxidoreductase,
denitrification, catalysis, enzyme mechanism, nitrate
assimilation; 0.90A {Achromobacter cycloclastes} SCOP:
b.6.1.3 b.6.1.3 PDB: 1nib_A 1nia_A 1nid_A 1nie_A 1nic_A
1nif_A 2bw5_A 2bwd_A 2bwi_A 2nrd_A 2y1a_A 1kcb_A 1rzp_A*
1rzq_A 2avf_A 1as6_A 1aq8_A 1as7_A 1as8_A 2afn_A ...
Length = 340
Score = 77.6 bits (191), Expect = 3e-18
Identities = 16/97 (16%), Positives = 33/97 (34%), Gaps = 12/97 (12%)
Query: 19 VTADGFERAILSINRQLPGPSIQVCKGDTIIVDVKNHMIDREVTLHWHGVYQKVTPW--- 75
+ +G E ++ N +PGP + V + D + + + N + H + +
Sbjct: 52 IDREGTEIHAMTFNGSVPGPLMVVHENDYVELRLINP----DTNTLLHNI-----DFHAA 102
Query: 76 MDGVPMVTQCPIPSSTTFRYKFPAMPSGTFFYHSHVD 112
+ + +F A G F YH +
Sbjct: 103 TGALGGGALTQVNPGEETTLRFKATKPGVFVYHCAPE 139
>2dv6_A Nitrite reductase; electron transfer, reduction, denitrification,
oxidoreductase; 2.20A {Hyphomicrobium denitrificans}
Length = 447
Score = 77.2 bits (190), Expect = 5e-18
Identities = 22/93 (23%), Positives = 35/93 (37%), Gaps = 8/93 (8%)
Query: 21 ADGFERAILSINRQLPGPSIQVCKGDTIIVDVKNHM-IDREVTLHWHGVYQKVTPWMDGV 79
D + N ++PGP ++V GDT+ + +KNH ++ +HG G
Sbjct: 178 DDNTTYTYWTFNGKVPGPFLRVRVGDTVELHLKNHKDSLMVHSVDFHGATG-----PGGA 232
Query: 80 PMVTQCPIPSSTTFRYKFPAMPSGTFFYHSHVD 112
TQ F A+ G + YH
Sbjct: 233 AAFTQ--TDPGEETVVTFKALIPGIYVYHCATP 263
Score = 51.8 bits (124), Expect = 5e-09
Identities = 15/76 (19%), Positives = 28/76 (36%), Gaps = 12/76 (15%)
Query: 36 PGPSIQVCKGDTIIVDVKNHMIDREVTLHWHGVYQKVTPWMDGVPMVTQCPIPSSTTFRY 95
P++ V +G+T+ V++ N E H V D + + + +
Sbjct: 53 INPTLVVHEGETVQVNLVNG----EGAQHDVVV--------DQYAARSAIVNGKNASSTF 100
Query: 96 KFPAMPSGTFFYHSHV 111
F A G F Y+ +
Sbjct: 101 SFVASKVGEFNYYCSI 116
Score = 27.5 bits (61), Expect = 1.3
Identities = 12/91 (13%), Positives = 24/91 (26%), Gaps = 12/91 (13%)
Query: 33 RQLPG-PSIQVCKGDTIIVDVKNHMIDREVTLHWHGVYQKVTPWMDGVPM--------VT 83
L + G+T+ + + + H G + G +
Sbjct: 333 GSLTRSHPLYASVGETVRIFFGVGGPNFTSSFHVIGEIFDHV-YSLGSVVSPPLIGVQTV 391
Query: 84 QCPIPSSTTFRYKFPAMPSGTFFYHSHVDRR 114
P +T +K +G + H R
Sbjct: 392 SVPPGGATIVDFKIDR--AGRYILVDHALSR 420
>1sdd_A Coagulation factor V; copper-binding protein, cofactor, blood
clottin; HET: NAG NDG; 2.80A {Bos taurus} SCOP: b.6.1.3
b.6.1.3
Length = 306
Score = 76.3 bits (187), Expect = 8e-18
Identities = 17/96 (17%), Positives = 35/96 (36%), Gaps = 21/96 (21%)
Query: 35 LPGPSIQVCKGDTIIVDVKNHMIDREVTLHWHGVYQKVTPWMDGVPM--------VTQCP 86
L GP++ GD + V KN + +++H G+ + + +G
Sbjct: 57 LLGPTLYAEVGDIMKVHFKNKA-HKPLSIHAQGIK--YSKFSEGASYSDHTLPMEKMDDA 113
Query: 87 IPSSTTFRYKFPA----------MPSGTFFYHSHVD 112
+ + Y++ P T Y+S+V+
Sbjct: 114 VAPGQEYTYEWIISEHSGPTHDDPPCLTHIYYSYVN 149
Score = 34.7 bits (79), Expect = 0.004
Identities = 14/77 (18%), Positives = 27/77 (35%), Gaps = 8/77 (10%)
Query: 38 PSIQVCKGDTIIVDVKNHMIDRE-VTLHWHGVYQKVTP-WMDGVPMVTQCPIPSSTTFRY 95
P I VC D I + E ++H++G + + + + S+T+
Sbjct: 215 PDITVCAHDHISWHLIGMSSGPELFSIHFNGQVLEQNHHKISAIT------LVSATSTTA 268
Query: 96 KFPAMPSGTFFYHSHVD 112
P G + S +
Sbjct: 269 NMTVSPEGRWTIASLIP 285
>2j5w_A Ceruloplasmin, ferroxidase; oxidoreductase, plasma protein, copper
transport, copper, transport, polymorphism,
glycoprotein, multi-copper oxidase; HET: NAG; 2.80A
{Homo sapiens} SCOP: b.6.1.3 b.6.1.3 b.6.1.3 b.6.1.3
b.6.1.3 PDB: 1kcw_A*
Length = 1065
Score = 75.0 bits (183), Expect = 5e-17
Identities = 22/97 (22%), Positives = 30/97 (30%), Gaps = 21/97 (21%)
Query: 34 QLPGPSIQVCKGDTIIVDVKNHMIDREVTLHWHGVYQKVTPWMDGVPM--------VTQC 85
GP I+ GD + V +KN R T H HG+ +G
Sbjct: 91 GFLGPIIKAETGDKVYVHLKNLA-SRPYTFHSHGIT--YYKEHEGAIYPDNTTDFQRADD 147
Query: 86 PIPSSTTFRYKFPAMPSG----------TFFYHSHVD 112
+ + Y A T YHSH+D
Sbjct: 148 KVYPGEQYTYMLLATEEQSPGEGDGNCVTRIYHSHID 184
Score = 70.4 bits (171), Expect = 2e-15
Identities = 21/98 (21%), Positives = 31/98 (31%), Gaps = 20/98 (20%)
Query: 25 ERAILSINRQLPGPSIQVCKGDTIIVDVKNHMIDREVTLHWHGVYQKVTPWMDGVPMVTQ 84
ER + + GP + GD + + KN R ++H HGV T
Sbjct: 797 ERKAEEEHLGILGPQLHADVGDKVKIIFKNMA-TRPYSIHAHGVQ---------TESSTV 846
Query: 85 CPIPSSTTFRYKFPA----------MPSGTFFYHSHVD 112
P T Y + + Y+S VD
Sbjct: 847 TPTLPGETLTYVWKIPERSGAGTEDSACIPWAYYSTVD 884
Score = 63.4 bits (153), Expect = 6e-13
Identities = 19/101 (18%), Positives = 30/101 (29%), Gaps = 21/101 (20%)
Query: 32 NRQLPGPSIQVCKGDTIIVDVKNHMIDREVTLHWHGV----------YQKVTPWMDGVPM 81
+ + GP I GDTI V N +++ GV Y
Sbjct: 445 HLGILGPVIWAEVGDTIRVTFHNKG-AYPLSIEPIGVRFNKNNEGTYYSPNYNPQSRSVP 503
Query: 82 VTQCPIPSSTTFRYKFPAMPSG----------TFFYHSHVD 112
+ + + TF Y++ Y+S VD
Sbjct: 504 PSASHVAPTETFTYEWTVPKEVGPTNADPVCLAKMYYSAVD 544
Score = 36.1 bits (82), Expect = 0.002
Identities = 11/74 (14%), Positives = 23/74 (31%), Gaps = 6/74 (8%)
Query: 40 IQVCKGDTIIVDVKNH-MIDREVTLHWHGVYQKVTPWMDGVPMVTQCPIPSSTTFRYKFP 98
+ +CKGD+++ + + +++ G T G + T+
Sbjct: 634 LTMCKGDSVVWYLFSAGNEADVHGIYFSGN----TYLWRGER-RDTANLFPQTSLTLHMW 688
Query: 99 AMPSGTFFYHSHVD 112
GTF
Sbjct: 689 PDTEGTFNVECLTT 702
Score = 33.8 bits (76), Expect = 0.010
Identities = 14/76 (18%), Positives = 26/76 (34%), Gaps = 3/76 (3%)
Query: 38 PSIQVCKGDTIIVDVKNHMIDREV-TLHWHGVYQKVTPWMDGVPMVTQCPIPSSTTFRYK 96
+ + GD + + + ++ T+H+HG + GV I T +
Sbjct: 970 QGLTMHVGDEVNWYLMGMGNEIDLHTVHFHGHSFQYKH--RGVYSSDVFDIFPGTYQTLE 1027
Query: 97 FPAMPSGTFFYHSHVD 112
G + H HV
Sbjct: 1028 MFPRTPGIWLLHCHVT 1043
Score = 32.2 bits (72), Expect = 0.035
Identities = 9/76 (11%), Positives = 21/76 (27%), Gaps = 6/76 (7%)
Query: 38 PSIQVCKGDTIIVDVKNHMIDREV-TLHWHGVYQKVTPWMDGVPMVTQCPIPSSTTFRYK 96
+ +C D + + + +V +HG + + + +T F
Sbjct: 271 SGLSMCAEDRVKWYLFGMGNEVDVHAAFFHGQALTNKNYR-----IDTINLFPATLFDAY 325
Query: 97 FPAMPSGTFFYHSHVD 112
A G +
Sbjct: 326 MVAQNPGEWMLSCQNL 341
>1oe1_A Dissimilatory copper-containing nitrite reductase; denitrification;
HET: PG4; 1.04A {Alcaligenes xylosoxidans} SCOP: b.6.1.3
b.6.1.3 PDB: 1oe3_A* 2xwz_A* 2vn3_A 2zon_A* 1haw_A
1hau_A* 2vm4_A* 2vw4_A* 2vw6_A* 2vw7_A* 2vm3_A* 1oe2_A*
2jl0_A* 2xx1_A 2xxg_A* 2xxf_A* 1gs8_A 1wa1_X* 1wa2_X*
2jl3_A* ...
Length = 336
Score = 71.7 bits (176), Expect = 4e-16
Identities = 19/94 (20%), Positives = 33/94 (35%), Gaps = 6/94 (6%)
Query: 19 VTADGFERAILSINRQLPGPSIQVCKGDTIIVDVKNHMIDREVTLHWHGVYQKVTPWMDG 78
+ G ++ N +PGP++ V +GD + + + N H V
Sbjct: 46 IDDKGTTLQAMTFNGSMPGPTLVVHEGDYVQLTLVNP----ATNAMPHNV--DFHGATGA 99
Query: 79 VPMVTQCPIPSSTTFRYKFPAMPSGTFFYHSHVD 112
+ + +F A SGTF YH +
Sbjct: 100 LGGAKLTNVNPGEQATLRFKADRSGTFVYHCAPE 133
>2wsd_A Spore coat protein A; oxidoreductase, multi-copper oxidase,
sporulation, COTA- LAC copper centre; 1.60A {Bacillus
subtilis} PDB: 1gsk_A 1hkp_A 1hkz_A 1hl0_A 1hl1_A
1of0_A* 1ogr_A 1uvw_A* 1w6l_A 1w6w_A 1w8e_A 2bhf_A
2x87_A 2x88_A* 4a67_A 4akq_A 4a68_A* 4akp_A* 4a66_A
4ako_A
Length = 513
Score = 70.5 bits (172), Expect = 2e-15
Identities = 21/118 (17%), Positives = 38/118 (32%), Gaps = 29/118 (24%)
Query: 22 DGFERAILSINRQLPGPSIQVCKGDTIIVDVKNHM---------------------IDRE 60
D + N PGP+I+V + + + V N++ + +
Sbjct: 42 DLPPTRLWGYNGLFPGPTIEVKRNENVYVKWMNNLPSTHFLPIDHTIHHSDSQHEEPEVK 101
Query: 61 VTLHWHGVYQKVTPWMDGVP--MVTQCPIPSSTTFR---YKFPAM-PSGTFFYHSHVD 112
+H HG DG P ++ + F+ Y +P +YH H
Sbjct: 102 TVVHLHGGV--TPDDSDGYPEAWFSKDFEQTGPYFKREVYHYPNQQRGAILWYHDHAM 157
>1mzy_A Copper-containing nitrite reductase; mutant M182T, gating
mechanism, electron oxidoreductase; 1.46A {Rhodobacter
sphaeroides} SCOP: b.6.1.3 b.6.1.3 PDB: 1mzz_A 1n70_A
1zv2_A 2a3t_A 2dws_A 2dwt_A 2dy2_A
Length = 333
Score = 69.1 bits (169), Expect = 3e-15
Identities = 15/93 (16%), Positives = 31/93 (33%), Gaps = 8/93 (8%)
Query: 21 ADGFERAILSINRQLPGPSIQVCKGDTIIVDVKNHMIDREV-TLHWHGVYQKVTPWMDGV 79
+ ++ + +PGP + V +GD + + + N + + +H +
Sbjct: 47 DEDAYLQAMTFDGSIPGPLMIVHEGDYVELTLINPPENTMPHNIDFHAA-------TGAL 99
Query: 80 PMVTQCPIPSSTTFRYKFPAMPSGTFFYHSHVD 112
I +F A +G F YH
Sbjct: 100 GGGGLTLINPGEKVVLRFKATRAGAFVYHCAPG 132
>1sdd_B Coagulation factor V; copper-binding protein, cofactor, blood
clottin; HET: NAG NDG; 2.80A {Bos taurus} SCOP: b.6.1.3
b.6.1.3 b.18.1.2 b.18.1.2
Length = 647
Score = 62.1 bits (150), Expect = 1e-12
Identities = 22/106 (20%), Positives = 35/106 (33%), Gaps = 21/106 (19%)
Query: 25 ERAILSINRQLPGPSIQVCKGDTIIVDVKNHMIDREVTLHWHGVYQKVTPWMDGVPMVTQ 84
+ + + GP I+ D I V KN R +LH HG+ +G
Sbjct: 56 PQGEYEEHLGILGPVIRAEVDDVIQVRFKNLA-SRPYSLHAHGL--SYEKSSEGKTYEDD 112
Query: 85 CP--------IPSSTTFRYKFPAMP----------SGTFFYHSHVD 112
P I + T+ Y + A + Y+S V+
Sbjct: 113 SPEWFKEDNAIQPNKTYTYVWHATTRSGPENPGSACRAWAYYSAVN 158
>2g23_A PHS, phenoxazinone synthase; copper, metalloprotein, laccase,
multicopper oxidase, hexamer; 2.30A {Streptomyces
antibioticus} PDB: 3gyr_A
Length = 612
Score = 59.2 bits (142), Expect = 2e-11
Identities = 17/130 (13%), Positives = 33/130 (25%), Gaps = 46/130 (35%)
Query: 22 DGFERAILSINRQLPGPSIQVCKGDTIIVDVKNHM------------------------- 56
+ + Q+PGP+I+V +G + + N +
Sbjct: 49 QLPPTLMWGYDGQVPGPTIEVRRGQRVRIAWTNRIPKGSEYPVTSVEVPLGPPGTPAPNT 108
Query: 57 ---------------IDREVTLHWHGVYQKVTPWMDGVPMVTQCPIPSSTTFRYKFPA-M 100
+ H HG DG + ++P
Sbjct: 109 EPGRGGVEPNKDVAALPAWSVTHLHGAQ--TGGGNDGWA---DNAVGFGDAQLSEYPNDH 163
Query: 101 PSGTFFYHSH 110
+ ++YH H
Sbjct: 164 QATQWWYHDH 173
>2r7e_B Coagulation factor VIII; ceruloplasmin fold, cupper protein fold,
C2 domain fold, ACU blood coagulation, disease mutation,
glycoprotein; HET: NAG BMA MAN; 3.70A {Homo sapiens}
PDB: 3cdz_B*
Length = 770
Score = 51.3 bits (122), Expect = 7e-09
Identities = 15/86 (17%), Positives = 26/86 (30%), Gaps = 13/86 (15%)
Query: 37 GPSIQVCKGDTIIVDVKNHMIDREVTLHWHGVYQKVTPWMDGVPMVTQCPIPSSTTFRYK 96
GP I+ D I+V +N R + + + + P + + T Y
Sbjct: 198 GPYIRAEVEDNIMVTFRN-QASRPYSFYSSLISYEEDQRQGAEPRKN--FVKPNETKTYF 254
Query: 97 FPAMP----------SGTFFYHSHVD 112
+ + Y S VD
Sbjct: 255 WKVQHHMAPTKDEFDCKAWAYSSDVD 280
>2cal_A Rusticyanin; iron respiratory electron transport chain, blue
protein, electron transport, metal- binding,
periplasmic; 1.10A {Thiobacillus ferrooxidans} PDB:
1cur_A 1gy2_A 1a3z_A 1e30_A 1gy1_A 1rcy_A 1a8z_A 2cak_A
Length = 154
Score = 36.3 bits (83), Expect = 8e-04
Identities = 15/86 (17%), Positives = 28/86 (32%), Gaps = 13/86 (15%)
Query: 35 LPGPSIQVCKGDTIIVDVKN------HMIDREVTLHWHGVYQKVTPWMDGVPMVTQC--- 85
P++++ G T+ V N H + G V P +D + T
Sbjct: 58 KKNPTLEIPAGATVDVTFINTNKGFGHSF----DITKKGPPYAVMPVIDPIVAGTGFSPV 113
Query: 86 PIPSSTTFRYKFPAMPSGTFFYHSHV 111
P + +GT++Y +
Sbjct: 114 PKDGKFGYTDFTWHPTAGTYYYVCQI 139
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 35.0 bits (80), Expect = 0.004
Identities = 25/132 (18%), Positives = 42/132 (31%), Gaps = 50/132 (37%)
Query: 3 ADCLKGNQK------ACRRKGCVTADGFERAILSINRQLPGPSIQVCKGDTIIVDVKN-- 54
D L+ N+ + +T + + + N LP G + + + N
Sbjct: 325 EDSLENNEGVPSPMLSISN---LTQEQVQDYVNKTNSHLPA-------GKQVEISLVNGA 374
Query: 55 -HMIDREVT----------LHWHGVYQKVTPWMDGVPMVTQCPIPSS---TTFRYKF-P- 98
+++ V+ L K +D Q IP S F +F P
Sbjct: 375 KNLV---VSGPPQSLYGLNLTLRKA--KAPSGLD------QSRIPFSERKLKFSNRFLPV 423
Query: 99 AMPSGTFFYHSH 110
A P +HSH
Sbjct: 424 ASP-----FHSH 430
>1iby_A Nitrosocyanin; RED copper, cupredoxin, beta hairpin, metal binding
protein; 1.65A {Nitrosomonas europaea} SCOP: b.6.1.4
PDB: 1ibz_A 1ic0_A
Length = 112
Score = 29.5 bits (66), Expect = 0.14
Identities = 17/94 (18%), Positives = 30/94 (31%), Gaps = 20/94 (21%)
Query: 25 ERAILSINRQLPGPSIQVCKGDTIIVDVKNH-MIDREVTLHWHGVYQKVTPWMDGVPMVT 83
+ I + N ++ V KGD + V V+N I ++ GV + +
Sbjct: 25 VKNIRAFNVLNEPETLVVKKGDAVKVVVENKSPISEGFSIDAFGVQEVIKA--------- 75
Query: 84 QCPIPSSTTFRYKFPAMPSGTFFYHSHVDRRPYC 117
T F A +G F + +
Sbjct: 76 ------GETKTISFTADKAGAFTIWCQL----HP 99
>1vyi_A RNA polymerase alpha subunit; transferase, replication,
transcription, RNA-directed RNA polymerase,
phosphorylation; HET: GOL; 1.5A {Rabies virus} SCOP:
d.293.1.1
Length = 112
Score = 26.2 bits (57), Expect = 2.0
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 87 IPSSTTFRYKFPAMPSGTFFYH 108
I S + +YKFP+ SG F Y+
Sbjct: 20 IAESFSKKYKFPSRSSGIFLYN 41
>2wzl_A Phosphoprotein; viral protein, rabies, virion, chaperone,
nucleoprotein, RNA replication; 2.10A {Mokola virus}
Length = 303
Score = 26.0 bits (57), Expect = 3.6
Identities = 7/15 (46%), Positives = 11/15 (73%)
Query: 94 RYKFPAMPSGTFFYH 108
+YKFP+ SG F ++
Sbjct: 213 KYKFPSRSSGIFLWN 227
>3oa1_A Phosphoprotein; seattle structural genomics center for infectious
disease, R virus, protein degredation; 2.20A {Rabies
virus strain pasteur vaccin}
Length = 229
Score = 25.3 bits (55), Expect = 5.5
Identities = 7/15 (46%), Positives = 10/15 (66%)
Query: 94 RYKFPAMPSGTFFYH 108
+YKFP+ SG Y+
Sbjct: 144 KYKFPSRSSGILLYN 158
>2w8t_A SPT, serine palmitoyltransferase; HET: LLP; 1.25A {Sphingomonas
paucimobilis} PDB: 2w8u_A* 2w8w_A* 2xbn_A* 2w8j_A*
2w8v_A* 2jg2_A* 2jgt_A 2x8u_A*
Length = 427
Score = 25.3 bits (56), Expect = 6.9
Identities = 6/17 (35%), Positives = 11/17 (64%), Gaps = 2/17 (11%)
Query: 44 KGDTIIVDVKNH--MID 58
KG+ +I+D +H + D
Sbjct: 147 KGEYVILDADSHASIYD 163
>1rrv_A Glycosyltransferase GTFD; GT-B, glycosyltransferase, rossmann fold,
glycopeptide, VACO antibiotic, transferase-antibiotic
complex; HET: OMZ GHP OMY 3FG TYD BGC; 2.00A
{Amycolatopsis orientalis} SCOP: c.87.1.5
Length = 416
Score = 25.2 bits (55), Expect = 8.0
Identities = 7/27 (25%), Positives = 9/27 (33%)
Query: 78 GVPMVTQCPIPSSTTFRYKFPAMPSGT 104
G+P P P + PA T
Sbjct: 118 GLPFFYSVPSPVYLASPHLPPAYDEPT 144
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty
acid synthase, acyl-carrier-protein, beta-ketoacyl RED
beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces
cerevisiae}
Length = 1688
Score = 24.8 bits (54), Expect = 9.9
Identities = 7/32 (21%), Positives = 12/32 (37%), Gaps = 2/32 (6%)
Query: 92 TFRYKFPAMPSGTFFYHSHVDRRPYCPEIEEK 123
+++ M F + PY E+EE
Sbjct: 1485 AYKFFHNGMIYNKLFVS--KEHAPYTDELEED 1514
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.323 0.138 0.460
Gapped
Lambda K H
0.267 0.0585 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,056,921
Number of extensions: 111656
Number of successful extensions: 382
Number of sequences better than 10.0: 1
Number of HSP's gapped: 301
Number of HSP's successfully gapped: 65
Length of query: 127
Length of database: 6,701,793
Length adjustment: 83
Effective length of query: 44
Effective length of database: 4,384,350
Effective search space: 192911400
Effective search space used: 192911400
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 51 (23.7 bits)