RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy16567
(127 letters)
>d1hfua1 b.6.1.3 (A:1-131) Laccase {Inky cap fungus (Coprinus
cinereus) [TaxId: 5346]}
Length = 131
Score = 109 bits (274), Expect = 9e-33
Identities = 41/101 (40%), Positives = 56/101 (55%), Gaps = 6/101 (5%)
Query: 17 GCVTADGFERAILSINRQLPGPSIQVCKGDTIIVDVKNHMID----REVTLHWHGVYQKV 72
V+ DGF RA + +N GP I+ K D ++V N + + R ++HWHG++Q+
Sbjct: 14 ANVSPDGFTRAGILVNGV-HGPLIRGGKNDNFELNVVNDLDNPTMLRPTSIHWHGLFQRG 72
Query: 73 TPWMDGVPMVTQCPIPSSTTFRYKFP-AMPSGTFFYHSHVD 112
T W DG V QCPI F YKF A +GTF+YHSH
Sbjct: 73 TNWADGADGVNQCPISPGHAFLYKFTPAGHAGTFWYHSHFG 113
>d1gyca1 b.6.1.3 (A:1-130) Laccase {Trametes versicolor, laccase 2
[TaxId: 5325]}
Length = 130
Score = 105 bits (264), Expect = 3e-31
Identities = 38/99 (38%), Positives = 54/99 (54%), Gaps = 5/99 (5%)
Query: 19 VTADGFERAILSINRQLPGPSIQVCKGDTIIVDVKNHMID----REVTLHWHGVYQKVTP 74
V+ DGF R + +N P P I KGD ++V + + + + ++HWHG +Q T
Sbjct: 15 VSPDGFLRDAIVVNGVFPSPLITGKKGDRFQLNVVDTLTNHTMLKSTSIHWHGFFQAGTN 74
Query: 75 WMDGVPMVTQCPIPSSTTFRYKFPAM-PSGTFFYHSHVD 112
W DG V QCPI S +F Y F +GTF+YHSH+
Sbjct: 75 WADGPAFVNQCPIASGHSFLYDFHVPDQAGTFWYHSHLS 113
>d1v10a1 b.6.1.3 (A:1-136) Laccase {Rigidoporus lignosus [TaxId:
219653]}
Length = 136
Score = 103 bits (258), Expect = 3e-30
Identities = 31/100 (31%), Positives = 49/100 (49%), Gaps = 6/100 (6%)
Query: 19 VTADGF-ERAILSINRQLPGPSIQVCKGDTIIVDVKNHM----IDREVTLHWHGVYQKVT 73
+ DG R+ ++ P I D ++V + + + R ++HWHG +Q T
Sbjct: 14 LDPDGTGARSAVTAEGTTIAPLITGNIDDRFQINVIDQLTDANMRRATSIHWHGFFQAGT 73
Query: 74 PWMDGVPMVTQCPIPSSTTFRYKFPA-MPSGTFFYHSHVD 112
MDG V QCPI + +F Y F +GT++YHSH+
Sbjct: 74 TEMDGPAFVNQCPIIPNESFVYDFVVPGQAGTYWYHSHLS 113
>d1aoza1 b.6.1.3 (A:1-129) Ascorbate oxidase {Zucchini (Cucurbita
pepo var. medullosa) [TaxId: 3663]}
Length = 129
Score = 99.4 bits (247), Expect = 9e-29
Identities = 37/94 (39%), Positives = 54/94 (57%)
Query: 19 VTADGFERAILSINRQLPGPSIQVCKGDTIIVDVKNHMIDREVTLHWHGVYQKVTPWMDG 78
+ E ++ IN Q PGP+I+ GD+++V++ N + V +HWHG+ Q+ TPW DG
Sbjct: 15 WAPNCNENIVMGINGQFPGPTIRANAGDSVVVELTNKLHTEGVVIHWHGILQRGTPWADG 74
Query: 79 VPMVTQCPIPSSTTFRYKFPAMPSGTFFYHSHVD 112
++QC I TF Y F GTFFYH H+
Sbjct: 75 TASISQCAINPGETFFYNFTVDNPGTFFYHGHLG 108
>d2q9oa1 b.6.1.3 (A:1-162) Laccase {Melanocarpus albomyces [TaxId:
204285]}
Length = 162
Score = 83.2 bits (205), Expect = 5e-22
Identities = 34/98 (34%), Positives = 52/98 (53%), Gaps = 2/98 (2%)
Query: 17 GCVTADGF-ERAILSINRQLPGPSIQVCKGDTIIVDVKNHMIDREVTLHWHGVYQKVTPW 75
+ DG + ++ IN + GP+I GDT+ V V N+++ ++HWHG++QK T
Sbjct: 45 NWMGPDGVVKEKVMLINGNIMGPNIVANWGDTVEVTVINNLVTNGTSIHWHGIHQKDTNL 104
Query: 76 MDGVPMVTQC-PIPSSTTFRYKFPAMPSGTFFYHSHVD 112
DG VT+C P Y++ A GT +YHSH
Sbjct: 105 HDGANGVTECPIPPKGGQRTYRWRARQYGTSWYHSHFS 142
>d1kbva1 b.6.1.3 (A:13-163) Nitrite reductase, NIR {Neisseria
gonorrhoeae, AniA [TaxId: 485]}
Length = 151
Score = 79.0 bits (194), Expect = 2e-20
Identities = 22/92 (23%), Positives = 34/92 (36%), Gaps = 6/92 (6%)
Query: 21 ADGFERAILSINRQLPGPSIQVCKGDTIIVDVKNHMIDREVTLHWHGVYQKVTPWMDGVP 80
DG E + + +PG I+V +GDT+ V+ N+ + H V G
Sbjct: 41 DDGVEYRYWTFDGDVPGRMIRVREGDTVEVEFSNNP----SSTVPHNVDFHAATGQGG-- 94
Query: 81 MVTQCPIPSSTTFRYKFPAMPSGTFFYHSHVD 112
T + F A+ G + YH V
Sbjct: 95 GAAATFTAPGRTSTFSFKALQPGLYIYHCAVA 126
>d1oe2a1 b.6.1.3 (A:1-159) Nitrite reductase, NIR {Alcaligenes
xylosoxidans [TaxId: 85698]}
Length = 159
Score = 79.0 bits (194), Expect = 2e-20
Identities = 19/94 (20%), Positives = 32/94 (34%), Gaps = 6/94 (6%)
Query: 19 VTADGFERAILSINRQLPGPSIQVCKGDTIIVDVKNHMIDREVTLHWHGVYQKVTPWMDG 78
+ G ++ N +PGP++ V +GD + + + N H V
Sbjct: 46 IDDKGTTLQAMTFNGSMPGPTLVVHEGDYVQLTLVNPAT----NAMPHNVEFHGATGAL- 100
Query: 79 VPMVTQCPIPSSTTFRYKFPAMPSGTFFYHSHVD 112
+ +F A SGTF YH +
Sbjct: 101 -GGAKLTNVNPGEQATLRFKADRSGTFVYHCAPE 133
>d2j5wa1 b.6.1.3 (A:1-192) Ceruloplasmin {Human (Homo sapiens)
[TaxId: 9606]}
Length = 192
Score = 78.2 bits (192), Expect = 8e-20
Identities = 21/94 (22%), Positives = 29/94 (30%), Gaps = 17/94 (18%)
Query: 35 LPGPSIQVCKGDTIIVDVKNHMIDREVTLHWHGVYQKVT----PWMDGVP--MVTQCPIP 88
GP I+ GD + V +KN T H HG+ + D +
Sbjct: 73 FLGPIIKAETGDKVYVHLKNLASR-PYTFHSHGITYYKEHEGAIYPDNTTDFQRADDKVY 131
Query: 89 SSTTFRYKFPA----------MPSGTFFYHSHVD 112
+ Y A T YHSH+D
Sbjct: 132 PGEQYTYMLLATEEQSPGEGDGNCVTRIYHSHID 165
>d1sdda1 b.6.1.3 (A:1-180) Coagulation factor V {Cow (Bos taurus)
[TaxId: 9913]}
Length = 180
Score = 75.9 bits (186), Expect = 6e-19
Identities = 17/94 (18%), Positives = 36/94 (38%), Gaps = 17/94 (18%)
Query: 35 LPGPSIQVCKGDTIIVDVKNHMIDREVTLHWHGVY----QKVTPWMDGVPMVTQC--PIP 88
L GP++ GD + V KN + +++H G+ + + D + + +
Sbjct: 57 LLGPTLYAEVGDIMKVHFKNKA-HKPLSIHAQGIKYSKFSEGASYSDHTLPMEKMDDAVA 115
Query: 89 SSTTFRYKFPA----------MPSGTFFYHSHVD 112
+ Y++ P T Y+S+V+
Sbjct: 116 PGQEYTYEWIISEHSGPTHDDPPCLTHIYYSYVN 149
>d1gska1 b.6.1.3 (A:2-182) Spore coat protein A, CotA {Bacillus
subtilis [TaxId: 1423]}
Length = 181
Score = 75.3 bits (184), Expect = 1e-18
Identities = 18/119 (15%), Positives = 34/119 (28%), Gaps = 25/119 (21%)
Query: 19 VTADGFERAILSINRQLPGPSIQVCKGDTIIVDVKNHMI--------------------- 57
+ D + N PGP+I+V + + + V N++
Sbjct: 38 LHRDLPPTRLWGYNGLFPGPTIEVKRNENVYVKWMNNLPSTHFLPIDHTIHHSDSQHEEP 97
Query: 58 DREVTLHWHGVYQKVTPWMDGVPMVTQCPI---PSSTTFRYKFPA-MPSGTFFYHSHVD 112
+ + +H HG ++ P Y +P +YH H
Sbjct: 98 EVKTVVHLHGGVTPDDSDGYPEAWFSKDFEQTGPYFKREVYHYPNQQRGAILWYHDHAM 156
>d2j5wa3 b.6.1.3 (A:347-553) Ceruloplasmin {Human (Homo sapiens)
[TaxId: 9606]}
Length = 207
Score = 75.5 bits (185), Expect = 1e-18
Identities = 21/108 (19%), Positives = 32/108 (29%), Gaps = 21/108 (19%)
Query: 25 ERAILSINRQLPGPSIQVCKGDTIIVDVKNHMIDREVTLHWHGV----------YQKVTP 74
ER + + GP I GDTI V N +++ GV Y
Sbjct: 73 ERGPEEEHLGILGPVIWAEVGDTIRVTFHNKG-AYPLSIEPIGVRFNKNNEGTYYSPNYN 131
Query: 75 WMDGVPMVTQCPIPSSTTFRYKFPAMPSG----------TFFYHSHVD 112
+ + + TF Y++ Y+S VD
Sbjct: 132 PQSRSVPPSASHVAPTETFTYEWTVPKEVGPTNADPVCLAKMYYSAVD 179
>d1kv7a1 b.6.1.3 (A:31-170) multi-copper oxidase CueO {Escherichia
coli [TaxId: 562]}
Length = 140
Score = 72.9 bits (178), Expect = 4e-18
Identities = 28/99 (28%), Positives = 42/99 (42%), Gaps = 7/99 (7%)
Query: 15 RKGCVTADGFERAILSINRQLPGPSIQVCKGDTIIVDVKNHMIDREVTLHWHGVYQKVTP 74
G T G N L GP++++ +G + VD+ N + + E TLHWHG+
Sbjct: 23 GAGQSTFGGKTATTWGYNGNLLGPAVKLQRGKAVTVDIYNQLTE-ETTLHWHGLEV--PG 79
Query: 75 WMDGVPMVTQCPIPSSTTFRYKFPA-MPSGTFFYHSHVD 112
+DG P Q IP P+ T ++H H
Sbjct: 80 EVDGGP---QGIIPPGGKRSVTLNVDQPAATCWFHPHQH 115
>d2bw4a1 b.6.1.3 (A:8-164) Nitrite reductase, NIR {Alcaligenes
xylosoxidans [TaxId: 85698]}
Length = 157
Score = 72.8 bits (178), Expect = 4e-18
Identities = 19/94 (20%), Positives = 35/94 (37%), Gaps = 6/94 (6%)
Query: 19 VTADGFERAILSINRQLPGPSIQVCKGDTIIVDVKNHMIDREVTLHWHGVYQKVTPWMDG 78
+ +G E ++ N +PGP + V + D + + + N + H + G
Sbjct: 45 IDREGTEIHAMTFNGSVPGPLMVVHENDYVELRLINP----DTNTLLHNIDFHAATGALG 100
Query: 79 VPMVTQCPIPSSTTFRYKFPAMPSGTFFYHSHVD 112
+TQ + +F A G F YH +
Sbjct: 101 GGALTQ--VNPGEETTLRFKATKPGVFVYHCAPE 132
>d1mzya1 b.6.1.3 (A:41-193) Nitrite reductase, NIR {Rhodobacter
sphaeroides [TaxId: 1063]}
Length = 153
Score = 68.3 bits (166), Expect = 3e-16
Identities = 17/92 (18%), Positives = 31/92 (33%), Gaps = 6/92 (6%)
Query: 21 ADGFERAILSINRQLPGPSIQVCKGDTIIVDVKNHMIDREVTLHWHGVYQKVTPWMDGVP 80
+ ++ + +PGP + V +GD + + + N H + G
Sbjct: 45 DEDAYLQAMTFDGSIPGPLMIVHEGDYVELTLINPP----ENTMPHNIDFHAATGALGGG 100
Query: 81 MVTQCPIPSSTTFRYKFPAMPSGTFFYHSHVD 112
+T I +F A +G F YH
Sbjct: 101 GLT--LINPGEKVVLRFKATRAGAFVYHCAPG 130
>d2j5wa4 b.6.1.3 (A:706-884) Ceruloplasmin {Human (Homo sapiens)
[TaxId: 9606]}
Length = 179
Score = 65.8 bits (160), Expect = 4e-15
Identities = 21/98 (21%), Positives = 31/98 (31%), Gaps = 20/98 (20%)
Query: 25 ERAILSINRQLPGPSIQVCKGDTIIVDVKNHMIDREVTLHWHGVYQKVTPWMDGVPMVTQ 84
ER + + GP + GD + + KN R ++H HGV T
Sbjct: 73 ERKAEEEHLGILGPQLHADVGDKVKIIFKNMA-TRPYSIHAHGVQ---------TESSTV 122
Query: 85 CPIPSSTTFRYKFPAM----------PSGTFFYHSHVD 112
P T Y + + Y+S VD
Sbjct: 123 TPTLPGETLTYVWKIPERSGAGTEDSACIPWAYYSTVD 160
>d1e30a_ b.6.1.1 (A:) Rusticyanin {Thiobacillus ferrooxidans [TaxId:
920]}
Length = 153
Score = 62.2 bits (150), Expect = 5e-14
Identities = 11/93 (11%), Positives = 24/93 (25%), Gaps = 6/93 (6%)
Query: 24 FERAILSINRQLPGPSIQVCKGDTIIVDVKN--HMIDREVTLHWHG--VYQKVTPWMDGV 79
F ++ + P++++ G T+ V N + G
Sbjct: 47 FPFPSFEVHDK-KNPTLEIPAGATVDVTFINTNKGFGHSFDITKKGPPYAVMPVIDPIVA 105
Query: 80 PMVTQCPIPSSTTFRYKFP-AMPSGTFFYHSHV 111
F +GT++Y +
Sbjct: 106 GTGFSPVPKDGKFGYTNFTWHPTAGTYYYVCQI 138
>d2j5wa5 b.6.1.3 (A:892-1040) Ceruloplasmin {Human (Homo sapiens)
[TaxId: 9606]}
Length = 149
Score = 60.1 bits (145), Expect = 3e-13
Identities = 14/87 (16%), Positives = 27/87 (31%), Gaps = 3/87 (3%)
Query: 28 ILSINRQLPG--PSIQVCKGDTIIVDVKNHMIDREVTLHWHGVYQKVTPWMDGVPMVTQC 85
+ +IN ++ G + + GD + + + ++ H GV
Sbjct: 48 MHAINGRMFGNLQGLTMHVGDEVNWYLMGMGNEIDLH-TVHFHGHSFQYKHRGVYSSDVF 106
Query: 86 PIPSSTTFRYKFPAMPSGTFFYHSHVD 112
I T + G + H HV
Sbjct: 107 DIFPGTYQTLEMFPRTPGIWLLHCHVT 133
>d1sddb2 b.6.1.3 (B:1724-1862) Coagulation factor V {Cow (Bos
taurus) [TaxId: 9913]}
Length = 139
Score = 57.9 bits (139), Expect = 2e-12
Identities = 10/107 (9%), Positives = 28/107 (26%), Gaps = 1/107 (0%)
Query: 6 LKGNQKACRRKGCVTADGFERAILSINRQLPGPSIQVCKGDTIIVDVKNHMIDREVTLHW 65
R+ P +++ + + + + + N R++
Sbjct: 20 YDKKPTRSWRRASSEVKNSHEFHAINGMIYNLPGLRMYEQEWVRLHLLNLGGSRDIH-VV 78
Query: 66 HGVYQKVTPWMDGVPMVTQCPIPSSTTFRYKFPAMPSGTFFYHSHVD 112
H Q + + P+ + + A G + + V
Sbjct: 79 HFHGQTLLENGTQQHQLGVWPLLPGSFKTLEMKASKPGWWLLDTEVG 125
>d1sdda2 b.6.1.3 (A:181-296) Coagulation factor V {Cow (Bos taurus)
[TaxId: 9913]}
Length = 116
Score = 57.0 bits (137), Expect = 2e-12
Identities = 16/86 (18%), Positives = 32/86 (37%), Gaps = 8/86 (9%)
Query: 30 SINRQLPG--PSIQVCKGDTIIVDVKNHMIDREV-TLHWHGVYQKVTPWMDGVPMVTQCP 86
++N + G P I VC D I + E+ ++H++G ++
Sbjct: 25 TVNGYVNGTMPDITVCAHDHISWHLIGMSSGPELFSIHFNG-----QVLEQNHHKISAIT 79
Query: 87 IPSSTTFRYKFPAMPSGTFFYHSHVD 112
+ S+T+ P G + S +
Sbjct: 80 LVSATSTTANMTVSPEGRWTIASLIP 105
>d2j5wa2 b.6.1.3 (A:555-699) Ceruloplasmin {Human (Homo sapiens)
[TaxId: 9606]}
Length = 145
Score = 55.9 bits (134), Expect = 1e-11
Identities = 15/85 (17%), Positives = 30/85 (35%), Gaps = 6/85 (7%)
Query: 30 SINRQLPG--PSIQVCKGDTIIVDVKNHMIDREVTLHWHGVYQKVTPWMDGVPMVTQCPI 87
S+N + G P + +CKGD+++ + + + HG+Y ++ +
Sbjct: 49 SMNGFMYGNQPGLTMCKGDSVVWYLFSAGNEA----DVHGIYFSGNTYLWRGERRDTANL 104
Query: 88 PSSTTFRYKFPAMPSGTFFYHSHVD 112
T+ GTF
Sbjct: 105 FPQTSLTLHMWPDTEGTFNVECLTT 129
>d1kcwa2 b.6.1.3 (A:193-338) Ceruloplasmin {Human (Homo sapiens)
[TaxId: 9606]}
Length = 146
Score = 52.2 bits (124), Expect = 3e-10
Identities = 11/85 (12%), Positives = 23/85 (27%), Gaps = 6/85 (7%)
Query: 30 SINRQLPG--PSIQVCKGDTIIVDVKNHMIDREVTLHWHGVYQKVTPWMDGVPMVTQCPI 87
S+N G P + +C D + + + H + + + +
Sbjct: 50 SVNGYTFGSLPGLSMCAEDRVKWYLFGMGNEV----DVHAAFFHGQALTNKNYRIDTINL 105
Query: 88 PSSTTFRYKFPAMPSGTFFYHSHVD 112
+T F A G +
Sbjct: 106 FPATLFDAYMVAQNPGEWMLSCQNL 130
>d1kbva2 b.6.1.3 (A:164-314) Nitrite reductase, NIR {Neisseria
gonorrhoeae, AniA [TaxId: 485]}
Length = 151
Score = 37.4 bits (86), Expect = 1e-04
Identities = 12/77 (15%), Positives = 28/77 (36%), Gaps = 5/77 (6%)
Query: 38 PSIQVCKGDTIIVDVKNHMIDREVTLHWHGVYQKVTPWMDG----VPMVTQCPIPSSTTF 93
+++ G+T+ + V N + + H G +++G V +P+ +
Sbjct: 51 NALKAKAGETVRMYVGNGGPNLVSSFHVIGEIFDKV-YVEGGKLINENVQSTIVPAGGSA 109
Query: 94 RYKFPAMPSGTFFYHSH 110
+F G + H
Sbjct: 110 IVEFKVDIPGNYTLVDH 126
>d1sddb1 b.6.1.3 (B:1657-1723) Coagulation factor V {Cow (Bos
taurus) [TaxId: 9913]}
Length = 67
Score = 29.1 bits (65), Expect = 0.039
Identities = 7/37 (18%), Positives = 13/37 (35%), Gaps = 10/37 (27%)
Query: 86 PIPSSTTFRYKFPAMPSG----------TFFYHSHVD 112
I + T+ Y + A + Y+S V+
Sbjct: 2 AIQPNKTYTYVWHATTRSGPENPGSACRAWAYYSAVN 38
>d1kv7a3 b.6.1.3 (A:336-516) multi-copper oxidase CueO {Escherichia
coli [TaxId: 562]}
Length = 181
Score = 30.4 bits (68), Expect = 0.042
Identities = 11/84 (13%), Positives = 19/84 (22%), Gaps = 9/84 (10%)
Query: 38 PSIQVCKGDTIIVDVKNHMIDREVTLHWHGVYQKVTPWMDGVPMVTQCPIP--------- 88
P KG + H HG ++ P +
Sbjct: 85 PMFAAAKGQYERWVISGVGDMMLHPFHIHGTQFRILSENGKPPAAHRAGWKDTVKVEGNV 144
Query: 89 SSTTFRYKFPAMPSGTFFYHSHVD 112
S ++ A + H H+
Sbjct: 145 SEVLVKFNHDAPKEHAYMAHCHLL 168
>d1ibya_ b.6.1.4 (A:) Red copper protein nitrosocyanin {Nitrosomonas
europaea [TaxId: 915]}
Length = 112
Score = 29.7 bits (66), Expect = 0.049
Identities = 17/94 (18%), Positives = 29/94 (30%), Gaps = 15/94 (15%)
Query: 19 VTADG-FERAILSINRQLPGPSIQVCKGDTIIVDVKNHMIDREVTLHWHGVYQKVTPWMD 77
+ +G + I + N ++ V KGD + V V+N +
Sbjct: 18 LNVEGVTVKNIRAFNVLNEPETLVVKKGDAVKVVVENK----SPISEGFSIDA------- 66
Query: 78 GVPMVTQCPIPSSTTFRYKFPAMPSGTFFYHSHV 111
Q I + T F A +G F +
Sbjct: 67 ---FGVQEVIKAGETKTISFTADKAGAFTIWCQL 97
>d1hfua3 b.6.1.3 (A:304-503) Laccase {Inky cap fungus (Coprinus
cinereus) [TaxId: 5346]}
Length = 200
Score = 29.0 bits (64), Expect = 0.12
Identities = 12/85 (14%), Positives = 26/85 (30%), Gaps = 8/85 (9%)
Query: 36 PGPSIQVCKGDTIIVDVKNHMIDREVTLHWHGVYQKVTPWMDGVPMVTQCPI-------- 87
G ++ + + + V ++ H HG V P+
Sbjct: 68 AGSVYELPRNQVVELVVPAGVLGGPHPFHLHGHAFSVVRSAGSSTYNFVNPVKRDVVSLG 127
Query: 88 PSSTTFRYKFPAMPSGTFFYHSHVD 112
+ +F G +F+H H++
Sbjct: 128 VTGDEVTIRFVTDNPGPWFFHCHIE 152
>d1gyca3 b.6.1.3 (A:301-499) Laccase {Trametes versicolor, laccase 2
[TaxId: 5325]}
Length = 199
Score = 28.7 bits (63), Expect = 0.18
Identities = 12/75 (16%), Positives = 17/75 (22%), Gaps = 10/75 (13%)
Query: 48 IIVDVKNHMIDREVTLHWHGVYQKVTPWMDGVPMVTQCP----------IPSSTTFRYKF 97
I + H HG V P + +F
Sbjct: 82 ITLPATALAPGAPHPFHLHGHAFAVVRSAGSTTYNYNDPIFRDVVSTGTPAAGDNVTIRF 141
Query: 98 PAMPSGTFFYHSHVD 112
G +F H H+D
Sbjct: 142 QTDNPGPWFLHCHID 156
>d1v10a3 b.6.1.3 (A:305-494) Laccase {Rigidoporus lignosus [TaxId:
219653]}
Length = 190
Score = 28.3 bits (62), Expect = 0.22
Identities = 14/85 (16%), Positives = 22/85 (25%), Gaps = 11/85 (12%)
Query: 36 PGPSIQVCKGDTIIVDVKNHMIDREVTLHWHGVYQKVTPWMDGVPMVTQCPI-------- 87
G I + I + + H HG V P+
Sbjct: 70 GGAVISLPANQVIEISIPGGGNHP---FHLHGHNFDVVRTPGSSVYNYVNPVRRDVVSIG 126
Query: 88 PSSTTFRYKFPAMPSGTFFYHSHVD 112
++F G +F H H+D
Sbjct: 127 GGGDNVTFRFVTDNPGPWFLHCHID 151
>d1n8pa_ c.67.1.3 (A:) Cystathionine gamma-lyase (CYS3) {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 393
Score = 27.9 bits (61), Expect = 0.40
Identities = 12/22 (54%), Positives = 14/22 (63%)
Query: 86 PIPSSTTFRYKFPAMPSGTFFY 107
PI STTF+ PA P GT+ Y
Sbjct: 28 PISLSTTFKQSSPANPIGTYEY 49
>d1vyia_ d.293.1.1 (A:) Phosphoprotein M1, C-terminal domain {Rabies
virus, strain CVS-11 [TaxId: 11292]}
Length = 111
Score = 26.4 bits (58), Expect = 0.64
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 87 IPSSTTFRYKFPAMPSGTFFYH 108
I S + +YKFP+ SG F Y+
Sbjct: 20 IAESFSKKYKFPSRSSGIFLYN 41
>d2bw4a2 b.6.1.3 (A:166-338) Nitrite reductase, NIR {Alcaligenes
xylosoxidans [TaxId: 85698]}
Length = 173
Score = 25.6 bits (56), Expect = 1.6
Identities = 14/68 (20%), Positives = 22/68 (32%), Gaps = 9/68 (13%)
Query: 50 VDVKNHMIDREVTLHWHG-----VYQ--KVTPWMDGVPMVTQCPIPSSTTFRYKFPAMPS 102
V V + +R+ H G V+ K D P ++ Y F
Sbjct: 76 VLVVHSQANRDTRPHLIGGHGDYVWATGKFRNPPDLDQETWLIPGGTAGAAFYTFRQ--P 133
Query: 103 GTFFYHSH 110
G + Y +H
Sbjct: 134 GVYAYVNH 141
>d2dy1a5 d.58.11.1 (A:570-665) Elongation factor G (EF-G) {Thermus
thermophilus, EF-G-2 [TaxId: 274]}
Length = 96
Score = 24.9 bits (54), Expect = 1.8
Identities = 8/68 (11%), Positives = 18/68 (26%), Gaps = 6/68 (8%)
Query: 66 HGVYQKVTPWMDGVPMVTQCPIPSSTTFRYKFPAMPSGTFFYHSHVDRRPYCPE------ 119
G + + + P+ + P + G Y P
Sbjct: 29 RGRILGMEQEGALSVVHAEVPLAEVLEYYKALPGLTGGAGAYTLEFSHYAEVPPHLAQRI 88
Query: 120 IEEKKKTG 127
++E+ + G
Sbjct: 89 VQERAQEG 96
>d1zj8a2 d.58.36.1 (A:10-161) Sulfite reductase NirA
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 152
Score = 24.9 bits (54), Expect = 3.0
Identities = 4/14 (28%), Positives = 6/14 (42%)
Query: 58 DREVTLHWHGVYQK 71
D W G+Y +
Sbjct: 49 DLRGRFRWWGLYTQ 62
>d2de6a2 d.129.3.3 (A:143-384) Terminal oxygenase component of
carbazole CarAa {Janthinobacterium sp. j3 [TaxId:
213804]}
Length = 242
Score = 24.4 bits (53), Expect = 4.4
Identities = 14/53 (26%), Positives = 18/53 (33%), Gaps = 4/53 (7%)
Query: 50 VDVKNHMIDREVTLHWH----GVYQKVTPWMDGVPMVTQCPIPSSTTFRYKFP 98
V V I EV V ++ W+ GV V P P F + P
Sbjct: 94 VPVFEGTIGGEVVREGAYGEKIVANDISIWLPGVLKVNPFPNPDMMQFEWYVP 146
>d3bmva2 b.3.1.1 (A:579-683) Cyclodextrin glycosyltransferase,
C-terminal domain {Thermoanaerobacterium [TaxId: 28895]}
Length = 105
Score = 23.7 bits (51), Expect = 4.8
Identities = 6/33 (18%), Positives = 12/33 (36%)
Query: 81 MVTQCPIPSSTTFRYKFPAMPSGTFFYHSHVDR 113
+P+ TT ++KF T + +
Sbjct: 55 WYYDVSVPAGTTIQFKFIKKNGNTITWEGGSNH 87
>d1gska3 b.6.1.3 (A:357-510) Spore coat protein A, CotA {Bacillus
subtilis [TaxId: 1423]}
Length = 154
Score = 24.3 bits (52), Expect = 5.0
Identities = 9/76 (11%), Positives = 16/76 (21%), Gaps = 5/76 (6%)
Query: 37 GPSIQVCKGDTIIVDVKNHMIDREVTLHWHGVYQKVTPWMDGVPMVTQCPIPSSTTFRYK 96
S +V + + T W D +
Sbjct: 69 LVSFRVLDRRPFDIARYQESGELSYTGPAVPPPPSEKGWKDTIQA----HAGEVLRIAAT 124
Query: 97 FPAMPSGTFFYHSHVD 112
F G + +H H+
Sbjct: 125 FGPYS-GRYVWHCHIL 139
>d2q9oa3 b.6.1.3 (A:344-559) Laccase {Melanocarpus albomyces [TaxId:
204285]}
Length = 216
Score = 23.7 bits (50), Expect = 8.7
Identities = 5/26 (19%), Positives = 10/26 (38%)
Query: 87 IPSSTTFRYKFPAMPSGTFFYHSHVD 112
+P+ F G + +H H+
Sbjct: 138 LPAGGWLLLAFRTDNPGAWLFHCHIA 163
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.323 0.138 0.460
Gapped
Lambda K H
0.267 0.0609 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 529,605
Number of extensions: 23459
Number of successful extensions: 134
Number of sequences better than 10.0: 1
Number of HSP's gapped: 95
Number of HSP's successfully gapped: 41
Length of query: 127
Length of database: 2,407,596
Length adjustment: 75
Effective length of query: 52
Effective length of database: 1,377,846
Effective search space: 71647992
Effective search space used: 71647992
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 48 (22.5 bits)