BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy16569
         (385 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3MT0|A Chain A, The Crystal Structure Of A Functionally Unknown Protein
           Pa17 Pseudomonas Aeruginosa Pao1
          Length = 290

 Score = 39.7 bits (91), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 24/101 (23%), Positives = 44/101 (43%), Gaps = 4/101 (3%)

Query: 107 LIATSPDMFNGILKIRVGWVIEAIKVYLEII----GKDVNAMYNYSPFEIRQLLWKVLNV 162
           L+   PD   G+   R   +    + +L ++     +D +A  N    E+R+  + V   
Sbjct: 11  LVVIEPDQLEGLALKRAQLIAGVTQSHLHLLVCEKRRDHSAALNDLAQELREEGYSVSTN 70

Query: 163 REWADEEHLTVLQLRRLEGCWCRVPSHFYNQVWDIMIRTPE 203
           + W D  H T++  ++ EGC   +  HF +      I TP+
Sbjct: 71  QAWKDSLHQTIIAEQQAEGCGLIIKQHFPDNPLKKAILTPD 111


>pdb|3MHF|A Chain A, Tagatose-1,6-Bisphosphate Aldolase From Streptococcus
           Pyogenes
 pdb|3MHF|B Chain B, Tagatose-1,6-Bisphosphate Aldolase From Streptococcus
           Pyogenes
 pdb|3MHF|C Chain C, Tagatose-1,6-Bisphosphate Aldolase From Streptococcus
           Pyogenes
 pdb|3MHF|D Chain D, Tagatose-1,6-Bisphosphate Aldolase From Streptococcus
           Pyogenes
 pdb|3MHG|A Chain A, Dihydroxyacetone Phosphate Carbanion Intermediate In
           Tagatose-1,6- Bisphosphate Aldolase From Streptococcus
           Pyogenes
 pdb|3MHG|B Chain B, Dihydroxyacetone Phosphate Carbanion Intermediate In
           Tagatose-1,6- Bisphosphate Aldolase From Streptococcus
           Pyogenes
 pdb|3MHG|C Chain C, Dihydroxyacetone Phosphate Carbanion Intermediate In
           Tagatose-1,6- Bisphosphate Aldolase From Streptococcus
           Pyogenes
 pdb|3MHG|D Chain D, Dihydroxyacetone Phosphate Carbanion Intermediate In
           Tagatose-1,6- Bisphosphate Aldolase From Streptococcus
           Pyogenes
          Length = 326

 Score = 30.8 bits (68), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 32/119 (26%), Positives = 48/119 (40%), Gaps = 8/119 (6%)

Query: 22  SSNELVKVYQHLGVNKKLKLSGRPPRPIGALGTS-----KLAVGVIGQKETVFDKPLSPS 76
           +S E  KV  H  VN+ +K+  +    +  L        K   G     E +F K  +  
Sbjct: 175 ASPEFAKVKAH-KVNEAMKVFSKERFGVDVLKVEVPVNMKFVEG-FADGEVLFTKEEAAQ 232

Query: 77  EIRSVIYSTIQPYDVIQAVLQQEIVLYCGRLIATSPDMFNGILKIRVGWVIEAIKVYLE 135
             R    ST  PY  + A +  ++        A S   FNG+L  R  W   ++KVY+E
Sbjct: 233 AFRDQEASTDLPYIYLSAGVSAKLFQDTLVFAAESGAKFNGVLCGRATWA-GSVKVYIE 290


>pdb|3JRK|A Chain A, A Putative Tagatose 1,6-Diphosphate Aldolase From
           Streptococcus Pyogenes
 pdb|3JRK|B Chain B, A Putative Tagatose 1,6-Diphosphate Aldolase From
           Streptococcus Pyogenes
 pdb|3JRK|C Chain C, A Putative Tagatose 1,6-Diphosphate Aldolase From
           Streptococcus Pyogenes
 pdb|3JRK|D Chain D, A Putative Tagatose 1,6-Diphosphate Aldolase From
           Streptococcus Pyogenes
 pdb|3JRK|E Chain E, A Putative Tagatose 1,6-Diphosphate Aldolase From
           Streptococcus Pyogenes
 pdb|3JRK|F Chain F, A Putative Tagatose 1,6-Diphosphate Aldolase From
           Streptococcus Pyogenes
 pdb|3JRK|G Chain G, A Putative Tagatose 1,6-Diphosphate Aldolase From
           Streptococcus Pyogenes
 pdb|3JRK|H Chain H, A Putative Tagatose 1,6-Diphosphate Aldolase From
           Streptococcus Pyogenes
          Length = 322

 Score = 29.3 bits (64), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 21/70 (30%), Positives = 31/70 (44%), Gaps = 1/70 (1%)

Query: 66  ETVFDKPLSPSEIRSVIYSTIQPYDVIQAVLQQEIVLYCGRLIATSPDMFNGILKIRVGW 125
           E +F K  +    R    ST  PY  + A +  ++        A S   FNG+L  R  W
Sbjct: 218 EVLFTKEEAAQAFRDQEASTDLPYIYLSAGVSAKLFQDTLVFAAESGAKFNGVLCGRATW 277

Query: 126 VIEAIKVYLE 135
              ++KVY+E
Sbjct: 278 A-GSVKVYIE 286


>pdb|3RAJ|H Chain H, Crystal Structure Of Human Cd38 In Complex With The Fab
           Fragment Of Antibody Hb7
          Length = 220

 Score = 28.5 bits (62), Expect = 7.2,   Method: Compositional matrix adjust.
 Identities = 12/32 (37%), Positives = 19/32 (59%)

Query: 317 NNAYHMFCKDNNIERKDMKSFYAAKQSITTGY 348
           N+   +F K N+++  D   ++ AK  ITTGY
Sbjct: 74  NSKSQVFFKMNSLQADDTAIYFCAKTLITTGY 105


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.321    0.137    0.410 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,322,981
Number of Sequences: 62578
Number of extensions: 453681
Number of successful extensions: 982
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 980
Number of HSP's gapped (non-prelim): 4
length of query: 385
length of database: 14,973,337
effective HSP length: 101
effective length of query: 284
effective length of database: 8,652,959
effective search space: 2457440356
effective search space used: 2457440356
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)