Query psy16569
Match_columns 385
No_of_seqs 200 out of 224
Neff 4.2
Searched_HMMs 13730
Date Fri Aug 16 16:22:33 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16569.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/16569hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1mgta1 a.4.2.1 (A:89-169) O6- 69.9 2.7 0.0002 31.6 4.7 53 188-254 2-59 (81)
2 d1sfea1 a.4.2.1 (A:93-176) Ada 67.4 2.9 0.00021 31.5 4.4 53 188-254 2-60 (84)
3 d1qnta1 a.4.2.1 (A:92-176) O6- 60.0 4.6 0.00033 30.4 4.2 52 189-254 2-60 (85)
4 d1rp3a2 a.4.13.2 (A:164-234) S 42.6 8.4 0.00061 26.4 3.0 63 90-161 1-63 (71)
5 d2f76x1 a.61.1.3 (X:1-94) Maso 26.0 69 0.005 24.1 6.1 69 126-201 11-89 (94)
6 d1u59a_ d.144.1.7 (A:) Tyrosin 18.2 1.8E+02 0.013 24.3 8.0 77 155-243 201-279 (285)
7 d1ny9a_ a.181.1.1 (A:) Transcr 14.8 59 0.0043 23.9 3.3 43 310-358 48-90 (94)
8 d2giab1 d.18.1.4 (B:28-173) GB 13.5 51 0.0037 26.5 2.7 27 250-276 106-132 (146)
9 d1qwra_ b.82.1.3 (A:) Mannose- 13.4 99 0.0072 26.9 5.0 55 14-84 90-146 (315)
10 d1ussa_ a.4.5.13 (A:) Histone 12.0 1.5E+02 0.011 21.4 5.0 16 279-294 6-21 (88)
No 1
>d1mgta1 a.4.2.1 (A:89-169) O6-alkylguanine-DNA alkyltransferase {Archaeon Pyrococcus kodakaraensis [TaxId: 311400]}
Probab=69.90 E-value=2.7 Score=31.56 Aligned_cols=53 Identities=25% Similarity=0.337 Sum_probs=38.8
Q ss_pred ccchHHHHHHHh-hCCCceEecceecCCCccccccchhhHH----HHHHHHHHHhhcCCCCccccccccCCC
Q psy16569 188 SHFYNQVWDIMI-RTPEGISVQGHILPQQPTLSNMTQSELT----FALVAVWDIMIRTPEGISVQGHILPQQ 254 (385)
Q Consensus 188 ~~FY~~VW~iL~-~~p~Gl~I~g~~~~~~~~~~n~~~~~~~----~~~~~~~~~~~~~p~~i~~~~~~L~~~ 254 (385)
..|+.+||+.|. .-|.| ++ +|-+|+- .|-++|=..|-+.|--|.|++||.-..
T Consensus 2 T~Fq~~V~~~l~~~IP~G-----~v---------~TYg~iA~~~g~~~RaVg~a~~~Np~~~~IPcHRVv~~ 59 (81)
T d1mgta1 2 TPFEKKVYEWLTKNVKRG-----SV---------ITYGDLAKALNTSPRAVGGAMKRNPYPIVVPCHRVVAH 59 (81)
T ss_dssp CHHHHHHHHHHHHHSCTT-----CC---------EEHHHHHHHTTSCHHHHHHHHHTCSCTTTSCGGGEEBT
T ss_pred ChHHHHHHHHHHHhCCCC-----Ce---------EeHHHHHHHcCCcHHHHHHHHHhCCCcccccceEEEec
Confidence 369999999765 47774 43 3444443 245778888999999999999998654
No 2
>d1sfea1 a.4.2.1 (A:93-176) Ada DNA repair protein {Escherichia coli [TaxId: 562]}
Probab=67.35 E-value=2.9 Score=31.50 Aligned_cols=53 Identities=25% Similarity=0.319 Sum_probs=40.6
Q ss_pred ccchHHHHHHHhhCCCceEecceecCCCccccccchhhHH------HHHHHHHHHhhcCCCCccccccccCCC
Q psy16569 188 SHFYNQVWDIMIRTPEGISVQGHILPQQPTLSNMTQSELT------FALVAVWDIMIRTPEGISVQGHILPQQ 254 (385)
Q Consensus 188 ~~FY~~VW~iL~~~p~Gl~I~g~~~~~~~~~~n~~~~~~~------~~~~~~~~~~~~~p~~i~~~~~~L~~~ 254 (385)
.+|..+||+.|..-|.|=++ |-+|+- -|-++|=..|-+.|-.+.|++||.-..
T Consensus 2 T~Fq~~V~~~l~~Ip~G~v~--------------TYg~iA~~~g~~~a~RaVg~a~~~Np~~~~iPcHRVv~s 60 (84)
T d1sfea1 2 TAFQQQVWQALRTIPCGETV--------------SYQQLANAIGKPKAVRAVASACAANKLAIVIPCHRVVRG 60 (84)
T ss_dssp CHHHHHHHHHHTTSCTTCCE--------------EHHHHHHHTTCTTCHHHHHHHHHTCCBBTTBCGGGEECT
T ss_pred ChHHHHHHHHHHcCCCCCee--------------eHHHHHHHhCCcccHHHHHHHHhcCCCCCcCCceeeecc
Confidence 47999999999999985443 334432 245777788999999999999998654
No 3
>d1qnta1 a.4.2.1 (A:92-176) O6-alkylguanine-DNA alkyltransferase {Human (Homo sapiens) [TaxId: 9606]}
Probab=59.98 E-value=4.6 Score=30.39 Aligned_cols=52 Identities=23% Similarity=0.267 Sum_probs=39.2
Q ss_pred cchHH-HHHHHhhCCCceEecceecCCCccccccchhhHHH------HHHHHHHHhhcCCCCccccccccCCC
Q psy16569 189 HFYNQ-VWDIMIRTPEGISVQGHILPQQPTLSNMTQSELTF------ALVAVWDIMIRTPEGISVQGHILPQQ 254 (385)
Q Consensus 189 ~FY~~-VW~iL~~~p~Gl~I~g~~~~~~~~~~n~~~~~~~~------~~~~~~~~~~~~p~~i~~~~~~L~~~ 254 (385)
+|-.+ ||+.|..-|.|=++ |-+++-= |-++|=..|-+.|-.+.|++||.-.+
T Consensus 2 ~F~~~~vw~~l~~IP~G~v~--------------TYg~iA~~~g~p~aaRaVg~a~~~Np~~~~iPcHRVv~s 60 (85)
T d1qnta1 2 SFTRQVLWKLLKVVKFGEVI--------------SYQQLAALAGNPKAARAVGGAMRGNPVPILIPCHRVVCS 60 (85)
T ss_dssp CHHHHHHHHHHHHCCTTCCE--------------EHHHHHHHTTCTTCHHHHHHHHTTCSSBTTBCGGGEECT
T ss_pred chHHHHHHHHHhcCCCCCcc--------------cHHHHHHHcCCcchHHHHHHHHHhCCCCCCCcceeEecC
Confidence 57766 79999999986544 3333322 45778888999999999999998764
No 4
>d1rp3a2 a.4.13.2 (A:164-234) Sigma factor sigma-28 (FliA) {Aquifex aeolicus [TaxId: 63363]}
Probab=42.61 E-value=8.4 Score=26.42 Aligned_cols=63 Identities=19% Similarity=0.226 Sum_probs=49.4
Q ss_pred chHHHHHHHHHHHHHhHHHhcCCccccchhhHhHHHHHHHHHHHHHHhcccchhhccCChHHHHHHHHHHhc
Q psy16569 90 DVIQAVLQQEIVLYCGRLIATSPDMFNGILKIRVGWVIEAIKVYLEIIGKDVNAMYNYSPFEIRQLLWKVLN 161 (385)
Q Consensus 90 d~~~~vL~QEii~ylg~lIrt~P~LF~gml~iRvG~ii~~m~~eL~~~~~eae~L~~lSP~eik~lL~~vLs 161 (385)
|+-+.++.+|..-.+-..|.+=|+-...++.+|.. -+.+.+|....+++|+..+++++++.+.
T Consensus 1 d~e~~~~~~e~~~~l~~~l~~L~~~~r~v~~l~~~---------~~~s~~eIA~~lgis~~tv~~~~~ra~~ 63 (71)
T d1rp3a2 1 NVEEEVIKRELTEKVKEAVSKLPEREKLVIQLIFY---------EELPAKEVAKILETSVSRVSQLKAKALE 63 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHT---------SCCCHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHh---------HhCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 45677888898888889999999888888877741 1344446677899999999999988764
No 5
>d2f76x1 a.61.1.3 (X:1-94) Mason-Pfizer monkey virus matrix protein {Simian Mason-Pfizer virus [TaxId: 11855]}
Probab=26.04 E-value=69 Score=24.08 Aligned_cols=69 Identities=16% Similarity=0.201 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHhcccchhhccCChHHHHHHHHHHhccccc-cccccc---hh------hHHhhhccccccCCccchHHHH
Q psy16569 126 VIEAIKVYLEIIGKDVNAMYNYSPFEIRQLLWKVLNVREW-ADEEHL---TV------LQLRRLEGCWCRVPSHFYNQVW 195 (385)
Q Consensus 126 ii~~m~~eL~~~~~eae~L~~lSP~eik~lL~~vLs~~~w-~~~~~l---~w------l~~R~l~GaLnRvP~~FY~~VW 195 (385)
++..|+.-|+..| ...|..++.+++.-|-..--| ....++ +| |+....++.-+++|.+.++ .|
T Consensus 11 ~i~~Lk~lLk~rG------vkV~~~~L~~f~~~I~~~cPWFp~~Gtl~~~~W~kvG~~l~~~~~~~~~~~ip~~~~~-~W 83 (94)
T d2f76x1 11 YVEQLKQALKTRG------VKVKYADLLKFFDFVKDTCPWFPQEGTIDIKRWRRVGDCFQDYYNTFGPEKVPVTAFS-YW 83 (94)
T ss_dssp HHHHHHHHHHTTT------CCCCHHHHHHHHHHHHHHCCCCCCCSSCHHHHHHHHHHHHHHHHHHHSCCSSCTHHHH-HH
T ss_pred HHHHHHHHHHHCC------eecCHHHHHHHHHHHHHhCCCccccCCccHHHHHHHHHHHHHHHHHcCCCccCchHHh-HH
Confidence 3445555555444 577888888998888886655 333344 44 5555666777899999988 88
Q ss_pred HHHhhC
Q psy16569 196 DIMIRT 201 (385)
Q Consensus 196 ~iL~~~ 201 (385)
.+..-|
T Consensus 84 ~lIr~~ 89 (94)
T d2f76x1 84 NLIKEL 89 (94)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 887655
No 6
>d1u59a_ d.144.1.7 (A:) Tyrosine-protein kinase ZAP-70 {Human (Homo sapiens) [TaxId: 9606]}
Probab=18.19 E-value=1.8e+02 Score=24.31 Aligned_cols=77 Identities=10% Similarity=0.108 Sum_probs=52.6
Q ss_pred HHHHHhc-ccc-ccccccchhhHHhhhccccccCCccchHHHHHHHhhCCCceEecceecCCCccccccchhhHHHHHHH
Q psy16569 155 LLWKVLN-VRE-WADEEHLTVLQLRRLEGCWCRVPSHFYNQVWDIMIRTPEGISVQGHILPQQPTLSNMTQSELTFALVA 232 (385)
Q Consensus 155 lL~~vLs-~~~-w~~~~~l~wl~~R~l~GaLnRvP~~FY~~VW~iL~~~p~Gl~I~g~~~~~~~~~~n~~~~~~~~~~~~ 232 (385)
.|+.+|+ |+. |..... .-+...-..|.--..|++.-+.+++++.+| ...+|+.|- |-.++.=.|..
T Consensus 201 ~l~E~lt~G~~Pf~~~~~-~~~~~~i~~~~~~~~p~~~~~~l~~li~~c----------l~~~p~~RP-s~~~i~~~L~~ 268 (285)
T d1u59a_ 201 TMWEALSYGQKPYKKMKG-PEVMAFIEQGKRMECPPECPPELYALMSDC----------WIYKWEDRP-DFLTVEQRMRA 268 (285)
T ss_dssp HHHHHHTTSCCTTTTCCT-HHHHHHHHTTCCCCCCTTCCHHHHHHHHHT----------TCSSGGGSC-CHHHHHHHHHH
T ss_pred HHHHHHhCCCCCCCCCCH-HHHHHHHHcCCCCCCCCcCCHHHHHHHHHH----------cCCCHhHCc-CHHHHHHHHHH
Confidence 4777887 553 533221 113334456777788899999999999999 566777775 55567667788
Q ss_pred HHHHhhcCCCC
Q psy16569 233 VWDIMIRTPEG 243 (385)
Q Consensus 233 ~~~~~~~~p~~ 243 (385)
.|..+...++|
T Consensus 269 ~~~~~~~~~~~ 279 (285)
T d1u59a_ 269 CYYSLASKVEG 279 (285)
T ss_dssp HHHHHHTTCSS
T ss_pred HHHHhhhccch
Confidence 88777766665
No 7
>d1ny9a_ a.181.1.1 (A:) Transcriptional activator TipA-S {Streptomyces lividans [TaxId: 1916]}
Probab=14.81 E-value=59 Score=23.87 Aligned_cols=43 Identities=14% Similarity=0.216 Sum_probs=31.6
Q ss_pred ccHHHHHHHHHHHhhhhhchhHHhHHHHhccCcchhhhHHHHHHHHHHh
Q psy16569 310 LDLDELVNNAYHMFCKDNNIERKDMKSFYAAKQSITTGYLARAVVNNVL 358 (385)
Q Consensus 310 i~ld~lv~~A~~~f~~d~~~~~~~~~~Fy~~~P~~~~~yl~~Av~~~ll 358 (385)
.+-+...+-| +||..| ...+.+|+.--.|++.||.+|+...-.
T Consensus 48 ~s~e~~~~Lg-~mYv~D-----~rF~~~yd~~~~Gla~fl~~Ai~~yA~ 90 (94)
T d1ny9a_ 48 CGYEMHTCLG-EMYVSD-----ERFTRNIDAAKPGLAAYMRDAILANAV 90 (94)
T ss_dssp CCHHHHHHHH-HHTTST-----HHHHHHHGGGSTTHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHH-HHHcCC-----HHHHHHHhccCccHHHHHHHHHHHHHH
Confidence 4455555554 478887 457899998878999999999876543
No 8
>d2giab1 d.18.1.4 (B:28-173) GBP21 {Trypanosoma brucei [TaxId: 5691]}
Probab=13.50 E-value=51 Score=26.51 Aligned_cols=27 Identities=19% Similarity=0.181 Sum_probs=17.7
Q ss_pred ccCCCccccccCcchhhHHHHHHHHHc
Q psy16569 250 ILPQQPTLSNMTQSELTFALLIEEILN 276 (385)
Q Consensus 250 ~L~~~~tlseMT~gE~~FAl~VE~lLn 276 (385)
|.++|..-.=--..|..||...||.|.
T Consensus 106 r~~sq~~e~wsv~f~n~favtlehfle 132 (146)
T d2giab1 106 RVASQRMEDWSVKFDNHFAVTLEHFLE 132 (146)
T ss_dssp BTTCCCCEEEEEEEETHHHHHHHHHHH
T ss_pred echhhhhhhhheeeccchhhhHHHHHH
Confidence 455663311124578899999999874
No 9
>d1qwra_ b.82.1.3 (A:) Mannose-6-phosphate isomerase ManA {Bacillus subtilis [TaxId: 1423]}
Probab=13.39 E-value=99 Score=26.93 Aligned_cols=55 Identities=16% Similarity=0.229 Sum_probs=37.6
Q ss_pred CccCeEeechhHHHHHHH--hcCCCCcceecCCCCCCccccccceeeeeecCCceeEecCCCCHHHHHHHHHh
Q psy16569 14 EVEPVQIWSSNELVKVYQ--HLGVNKKLKLSGRPPRPIGALGTSKLAVGVIGQKETVFDKPLSPSEIRSVIYS 84 (385)
Q Consensus 14 ev~PI~V~pa~~L~~iY~--~lG~n~kLgLSGRP~r~vg~L~TSkl~VGr~g~eE~vIs~PL~p~ei~~~i~~ 84 (385)
+--+|||+|.+..++.+. ..|..+.|-. +.....+++++|. .+.+.+|+++.|.+
T Consensus 90 ~~LSiQvHP~~~~A~~~~~~~~gK~E~wyi-------l~a~~~a~~~~G~---------~~~~~~e~~~~i~~ 146 (315)
T d1qwra_ 90 EDTSIKVHPDDYYAGENEEGELGKTECWYI-------IDCKENAEIIYGH---------TARSKTELVTMINS 146 (315)
T ss_dssp SCCCEEECCCHHHHHHHTTTCCCCCEEEEE-------EEECTTCEEEEEE---------CCSSHHHHHHHHHT
T ss_pred CCcccccCCCHHHHHhhccccCCCCceEEE-------EEcCCCcEEEEcC---------CCCCHHHHHHHHHc
Confidence 446899999999887653 2355555542 3444567888885 34688898888865
No 10
>d1ussa_ a.4.5.13 (A:) Histone H1 homologue Hho1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=12.04 E-value=1.5e+02 Score=21.44 Aligned_cols=16 Identities=13% Similarity=0.416 Sum_probs=13.0
Q ss_pred CCCcchhHHHHHHHHH
Q psy16569 279 TYPEYRQIIVELLSIV 294 (385)
Q Consensus 279 ~~PEYRQl~VE~L~vl 294 (385)
..|-|.++|+||+..+
T Consensus 6 ~~~sy~~MI~eAI~~L 21 (88)
T d1ussa_ 6 SSLTYKEMILKSMPQL 21 (88)
T ss_dssp SSCCHHHHHHHHHHHS
T ss_pred CCCCHHHHHHHHHHHc
Confidence 4788999999988764
Done!