RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy16569
(385 letters)
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 49.7 bits (118), Expect = 1e-06
Identities = 74/452 (16%), Positives = 139/452 (30%), Gaps = 177/452 (39%)
Query: 16 EPVQIWSSNELVKVYQHLGVNKKLKLSGRPPRPIG--AL------GTSKL-AV-GVIGQ- 64
+ + EL+K Y ++ RP AL G ++L A+ G GQ
Sbjct: 112 NDTTLVKTKELIKNYITA-----RIMAKRPFDKKSNSALFRAVGEGNAQLVAIFG--GQG 164
Query: 65 -KETVFDKPLSPSEIRSVIYSTIQPYDVIQAVLQQEIVLYCGRLIATSPDMFNGILKIRV 123
+ F+ E+R +Y T G LI S + + +++
Sbjct: 165 NTDDYFE------ELRD-LYQTYHVL--------------VGDLIKFSAETLSELIR--- 200
Query: 124 GWVIEAIKVYLEIIGKDVNAMYNYSPFEIRQLLWKVLNVREW-------ADEEHL----- 171
+ + ++ + LN+ EW D+++L
Sbjct: 201 ------------------------TTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPI 236
Query: 172 -----TVLQLRRLEGCWCRVPSHFYN--QVWDIMIRTPEGISVQGHILPQQPTLSNMTQS 224
V+QL +H+ ++ TP G + + +Q
Sbjct: 237 SCPLIGVIQL-----------AHYVVTAKLLGF---TP------GELRSYLKGATGHSQG 276
Query: 225 ELTFALVAV---WD-------IMIRTPEGISVQGHILPQQPTLS-NMTQSEL-------T 266
+T +A W+ I I V+ + +L ++ + L +
Sbjct: 277 LVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPS 336
Query: 267 FALLI-----EEILNHITY-----PEYRQIIVELLS-----IVS--TILLRNPELSFRKQ 309
L I E++ +++ P +Q+ + L++ +VS L L+ RK
Sbjct: 337 PMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKA 396
Query: 310 ---LDLDELVNNAYHMFCKDNNI---ERKDMKSFYAAKQSIT----TGYLARAV------ 353
LD+ + I ERK F + + L A
Sbjct: 397 KAPSGLDQ------------SRIPFSERK--LKFSNRFLPVASPFHSHLLVPASDLINKD 442
Query: 354 --VNNV-LKGGELATSCLDSIDGTHEDDLQHC 382
NNV ++ D+ DG+ DL+
Sbjct: 443 LVKNNVSFNAKDIQIPVYDTFDGS---DLRVL 471
Score = 33.1 bits (75), Expect = 0.18
Identities = 39/230 (16%), Positives = 71/230 (30%), Gaps = 84/230 (36%)
Query: 1 MMGTYGIQTQTPHEVEPVQIWSSNELVKVYQHLGVNKKLKLS---GR-------PPRPIG 50
M+ + T +V+ + +N HL K++++S G PP+ +
Sbjct: 338 MLSISNL---TQEQVQD-YVNKTN------SHLPAGKQVEISLVNGAKNLVVSGPPQSLY 387
Query: 51 ALGTS--KL-AVGVIGQKETVFDKPLSPSEIRSVIYST----IQ-PY---------DVIQ 93
L + K A + Q F + R + +S + P+ D+I
Sbjct: 388 GLNLTLRKAKAPSGLDQSRIPFSE-------RKLKFSNRFLPVASPFHSHLLVPASDLIN 440
Query: 94 AVLQQEIVLYCGRLIATSPDMFNGILKIRVGWVIEAIKVYLEIIGKDVNAM-YNYSPFEI 152
L + V + + D+ I VY G D+ + + S +
Sbjct: 441 KDLVKNNVSF------NAKDI--------------QIPVYDTFDGSDLRVLSGSISERIV 480
Query: 153 RQLLWKVLNVREW-----ADEEH-----------LTVLQLRRLEGCWCRV 186
++ + W H L VL R +G RV
Sbjct: 481 DCIIRLPVK---WETTTQFKATHILDFGPGGASGLGVLTHRNKDGTGVRV 527
Score = 32.7 bits (74), Expect = 0.26
Identities = 62/430 (14%), Positives = 132/430 (30%), Gaps = 170/430 (39%)
Query: 41 LSGRPPRPIGALGTSKLAVGVIGQKETVFDKPLSP----SEIRSVIYSTI-QPYDVIQAV 95
+ RP+ L+ G + E V P + S+++ + +P + A
Sbjct: 1 MDAYSTRPL------TLSHGSL---EHVLLVPTASFFIASQLQEQFNKILPEPTEGFAAD 51
Query: 96 LQQ----EIVL----YCGRLI-ATSPDMFNGILKIRVGWVIEAIKVYLEIIGKDVNAMYN 146
+ E+V Y L+ + F+ +L + + E YLE G D++A+
Sbjct: 52 DEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLT---EFENCYLE--GNDIHAL-- 104
Query: 147 YSPFEIRQLLWKVLNVREWADEEHLTVLQLRRLEGCWCRVPSHFYNQVWDIMIRTPEGIS 206
+LL E T+++ + + ++
Sbjct: 105 -----AAKLL----------QENDTTLVKTKE----LIK---NYI--------------- 127
Query: 207 VQGHILPQQPTLSNMTQSELTFALVAVWDIMIRTPEGISV---QGHILPQQPTLSNMTQS 263
I+ ++P + S L AV + + +++ QG+
Sbjct: 128 -TARIMAKRP-FDKKSNSAL---FRAVGEGNAQL---VAIFGGQGNT------------- 166
Query: 264 ELTFALLIEEILNHITYPEYRQIIVELLSIVSTILLR------NPELSFRKQLDLDELVN 317
+ F EE L + Y Y ++ +L+ + L + E F + L++ E +
Sbjct: 167 DDYF----EE-LRDL-YQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLE 220
Query: 318 NA--------------------------YHMFCKDNNIERKDMK---------------- 335
N Y + K +++
Sbjct: 221 NPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTA 280
Query: 336 ----------SFY-AAKQSIT----TGY----------LARAVVNNVLKGGELATSCLDS 370
SF+ + +++IT G L +++ + L+ E S + S
Sbjct: 281 VAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLS 340
Query: 371 IDGTHEDDLQ 380
I ++ +Q
Sbjct: 341 ISNLTQEQVQ 350
Score = 28.1 bits (62), Expect = 6.1
Identities = 20/99 (20%), Positives = 34/99 (34%), Gaps = 20/99 (20%)
Query: 133 YL----EIIGKDVNAMYNYSPFEIRQLLWKVLNVREWADEEHLTVLQLRRLEGCWCRVPS 188
L ++I KD+ N F + + V + + +D L+ R+ C R+P
Sbjct: 431 LLVPASDLINKDLVK--NNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPV 488
Query: 189 HFYNQVWDIMIRTPEGISVQGHIL---P-QQPTLSNMTQ 223
W+ + HIL P L +T
Sbjct: 489 K-----WETTTQFKA-----THILDFGPGGASGLGVLTH 517
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 48.7 bits (115), Expect = 2e-06
Identities = 53/378 (14%), Positives = 116/378 (30%), Gaps = 117/378 (30%)
Query: 73 LSPSEIRSVIYSTIQPYDVIQAVLQQEIVLYCGRLIATSPDMFNGILKIRVGWVIEAIKV 132
LS EI +I + V + +L + +L+I +++ IK
Sbjct: 46 LSKEEIDHII---MSKDAVSGTLRLFWTLLSKQEEMVQ--KFVEEVLRINYKFLMSPIKT 100
Query: 133 -----------YLEIIGKDVNAMYN----YSPFEIRQLLWKVLNVREWADEEHLTVLQLR 177
Y+E + +YN ++ + + +L L +R+ +L+LR
Sbjct: 101 EQRQPSMMTRMYIE----QRDRLYNDNQVFAKYNVSRLQ-PYLKLRQA-------LLELR 148
Query: 178 RLE--------GC---W-----CR---VPSHFYNQV-WDIMI---RTPEGISVQGHILPQ 214
+ G W C V ++ W + + +PE + +
Sbjct: 149 PAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFW-LNLKNCNSPETV-----LEML 202
Query: 215 QPTLSNMTQSELTFALVAVWDIMIRTPEGISVQGHILPQQPTLSN-MTQSELTFALLIEE 273
Q L + + + D I H + Q L + LL
Sbjct: 203 QKLLYQIDPN-----WTSRSDHSSNIKLRI----HSI--QAELRRLLKSKPYENCLL--- 248
Query: 274 ILNHITYPEYRQIIVELLSIVSTILL--RNPELSF------RKQLDLDELVNNAYH---- 321
+L ++ + ++ ILL R +++ + LD
Sbjct: 249 VLLNVQNAK----AWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVK 304
Query: 322 -MFCKDNNIERKDMKSFYAAKQSITTGYLARAVVNNVLKGG-------------ELAT-- 365
+ K + +D+ ++ +TT +++ ++ G +L T
Sbjct: 305 SLLLKYLDCRPQDLP-----REVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTII 359
Query: 366 -SCLDSIDGTHEDDLQHC 382
S L+ ++ + +
Sbjct: 360 ESSLNVLE---PAEYRKM 374
Score = 48.3 bits (114), Expect = 3e-06
Identities = 65/451 (14%), Positives = 135/451 (29%), Gaps = 151/451 (33%)
Query: 11 TPHEVEPVQIWSSNELVKVYQHLGVNKKLKLSGRPPRPI---GALGTSK--LAVGVIGQK 65
+ +K+ Q L L+L RP + + G LG+ K +A+
Sbjct: 122 DNQVFAKYNVSRLQPYLKLRQAL-----LEL--RPAKNVLIDGVLGSGKTWVAL------ 168
Query: 66 ETVFDKPLSPSEIRSVIYSTIQPYDVIQAVLQQEIVLYC---GRLIATSPDMFNGILKIR 122
+ + + + ++ + + VL+ L + S N +K+R
Sbjct: 169 DVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSN--IKLR 226
Query: 123 VGWVIEAIKVYLEIIGKDVNAMYNYSPFEIRQLLWKVL-NVREWADEEHLTVLQLRRLEG 181
+ + ++ L+ + Y LL VL NV + + L
Sbjct: 227 IHSIQAELRRLLK------SKPYE------NCLL--VLLNV--Q-NAKAWNAFNLS---- 265
Query: 182 CWCR--VPSHFYNQVWDIMIRTPEGISVQGHILPQQPTLSNMTQSELTFALVAVWDIMIR 239
C+ + + + QV D + + HI +T E +L+ + + R
Sbjct: 266 --CKILLTTR-FKQVTDFL-----SAATTTHI-SLDHHSMTLTPDE-VKSLLLKY-LDCR 314
Query: 240 T-----------PEGISVQGHILPQQPTLSNMTQSELTFAL--LIEEILNHITYPEYRQ- 285
P +S+ + + + L +IE LN + EYR+
Sbjct: 315 PQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKM 374
Query: 286 ------------IIVELLSIV------------------STILLRNPE----------LS 305
I LLS++ +++ + P+ L
Sbjct: 375 FDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLE 434
Query: 306 FRKQLDLD-----ELVNN-------------------------AYHMFCKDNNIERKDMK 335
+ +L+ + +V++ +H+ + ER +
Sbjct: 435 LKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLK-NIEHPERMTLF 493
Query: 336 S-------FYAAK-QSITTGYLARAVVNNVL 358
F K + +T + A + N L
Sbjct: 494 RMVFLDFRFLEQKIRHDSTAWNASGSILNTL 524
Score = 35.6 bits (81), Expect = 0.032
Identities = 39/299 (13%), Positives = 82/299 (27%), Gaps = 90/299 (30%)
Query: 48 PIGALGTSKLAVGVIG-------------------QKETVFD---KPLSPSEIRSVIYS- 84
P L T+ + +I + T+ + L P+E R +
Sbjct: 319 PREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRL 378
Query: 85 TIQPYDV-I-QAVLQ-----------QEIVLYCGR--LIATSPDMF----NGI-LKIRVG 124
++ P I +L +V + L+ P I L+++V
Sbjct: 379 SVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVK 438
Query: 125 WVIEA------IKVYLEIIGKDVNAMY-----NYSPFEIRQLLWKVLNVREWADEEHLTV 173
E + Y D + + Y I L + + +
Sbjct: 439 LENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMV-F 497
Query: 174 LQLR------RLEGCWCRVPSHFYNQVWDIMIRTPEGISVQGHILPQQPTLSNMTQSELT 227
L R R + N + + + +I P + + L
Sbjct: 498 LDFRFLEQKIRHDSTAWNASGSILNTLQQLKF-------YKPYICDNDPKYERLVNAILD 550
Query: 228 FALVAVWDIMIRTPEGISVQGHILPQQPTLSNMTQSELTFALLIEEILNHITYPEYRQI 286
F L + + +I + +++ + AL+ E+ I ++Q+
Sbjct: 551 F-LPKIEENLICSKY---------------TDLLR----IALMAED--EAIFEEAHKQV 587
>1w32_A Endo-1,4-beta-xylanase A precursor; mutant, calcium ION,
thermostable, glycosyle hydrolase, family 10, error
prone PCR, hydrolase; 1.2A {Cellvibrio japonicus} SCOP:
c.1.8.3 PDB: 1w2p_A 1w2v_A 1w3h_A 1clx_A 1e5n_A* 1xys_A
Length = 348
Score = 31.7 bits (72), Expect = 0.42
Identities = 9/37 (24%), Positives = 18/37 (48%)
Query: 243 GISVQGHILPQQPTLSNMTQSELTFALLIEEILNHIT 279
G+ Q H++ P+++N+ Q+ L + IT
Sbjct: 210 GVGFQMHVMNDYPSIANIRQAMQKIVALSPTLKIKIT 246
Score = 30.6 bits (69), Expect = 0.91
Identities = 11/96 (11%), Positives = 35/96 (36%), Gaps = 11/96 (11%)
Query: 204 GISVQGHILPQQPTLSNMTQSELTFA----LVAVW----DIMIRTPEGISVQGHIL---P 252
G+ Q H++ P+++N+ Q+ + + D+ + P + +
Sbjct: 210 GVGFQMHVMNDYPSIANIRQAMQKIVALSPTLKIKITELDVRLNNPYDGNSSNNYTNRND 269
Query: 253 QQPTLSNMTQSELTFALLIEEILNHITYPEYRQIIV 288
+ + + + + + +++ L + I V
Sbjct: 270 CAVSCAGLDRQKARYKEIVQAYLEVVPPGRRGGITV 305
>1us2_A Xylanase10C, endo-beta-1,4-xylanase; hydrolase, carbohydrate
binding module, xylan degradation; HET: XYP; 1.85A
{Cellvibrio japonicus} SCOP: b.18.1.11 c.1.8.3 PDB:
1us3_A
Length = 530
Score = 31.5 bits (71), Expect = 0.42
Identities = 13/91 (14%), Positives = 37/91 (40%), Gaps = 7/91 (7%)
Query: 204 GISVQGHILPQQPTLSNMTQSELTFA----LVAV--WDIMIRTPEGISVQGHILPQQPTL 257
G+ Q H+ P+++N++ + LV + D+ + P + + +
Sbjct: 378 GVGFQMHVCMNYPSIANISAAMKKVVDLGLLVKITELDVAVNQPHCDAYPANKINPLTEA 437
Query: 258 SNMTQSELTFALLIEEILNHITYPEYRQIIV 288
+ + Q + + +++ L+ + + I V
Sbjct: 438 AQLAQKK-RYCDVVKAYLDTVPVNQRGGISV 467
>1ur1_A Endoxylanase; hydrolase, family 10, glycoside hydrolase,
hemicellulose, xylan degradation; HET: XYS AHR; 1.43A
{Cellvibrio mixtus} SCOP: c.1.8.3 PDB: 1uqy_A* 1uqz_A*
1ur2_A* 2cnc_A*
Length = 378
Score = 30.7 bits (69), Expect = 0.84
Identities = 11/37 (29%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Query: 243 GISVQGHILPQQPTLSNMTQSELTFALLIEEILNHIT 279
G+ +QGH+ P ++ + +S + FA L + H T
Sbjct: 227 GLGIQGHLGIDTPPIAEIEKSIIAFAKLGLRV--HFT 261
Score = 27.6 bits (61), Expect = 8.1
Identities = 8/26 (30%), Positives = 16/26 (61%)
Query: 204 GISVQGHILPQQPTLSNMTQSELTFA 229
G+ +QGH+ P ++ + +S + FA
Sbjct: 227 GLGIQGHLGIDTPPIAEIEKSIIAFA 252
>1ta3_B Endo-1,4-beta-xylanase; beta alpha barrel (XIP-I), beta alpha
barrel (xylanase), HYD inhibitor-hydrolase complex; HET:
NAG; 1.70A {Emericella nidulans} SCOP: c.1.8.3
Length = 303
Score = 29.2 bits (66), Expect = 2.0
Identities = 7/35 (20%), Positives = 13/35 (37%)
Query: 204 GISVQGHILPQQPTLSNMTQSELTFALVAVWDIMI 238
GI Q H + + + + A V ++ I
Sbjct: 202 GIGSQAHYSSSHWSSTEAAGALSSLANTGVSEVAI 236
>2d1z_A Endo-1,4-beta-D-xylanase; TIM-barrel, retaining enzyme,
catalytic-site mutant, chemica hydrolase; 1.60A
{Streptomyces olivaceoviridis} PDB: 2d20_A* 2d22_A
2d23_A 2d24_A* 1xyf_A 1isw_A* 1isx_A* 1isy_A* 1isv_A*
1it0_A* 1v6u_A* 1v6v_A* 1v6w_A* 1v6x_A* 1isz_A
Length = 436
Score = 28.8 bits (64), Expect = 3.5
Identities = 10/38 (26%), Positives = 15/38 (39%), Gaps = 2/38 (5%)
Query: 242 EGISVQGHILPQQPTLSNMTQSELTFALLIEEILNHIT 279
+ + Q H P SN + FA L ++ IT
Sbjct: 200 DCVGFQSHFNSGSPYNSNFRTTLQNFAALGVDV--AIT 235
>3jsz_A LGT1, putative uncharacterized protein; glucosyltransferase,
legionnaire'S disease, legionella pneum transferase;
HET: MSE UPG; 1.70A {Legionella pneumophila} PDB:
2wzg_A* 3jt1_A* 2wzf_A*
Length = 525
Score = 28.7 bits (63), Expect = 3.7
Identities = 14/55 (25%), Positives = 20/55 (36%), Gaps = 3/55 (5%)
Query: 312 LDELVNNAYHMFCKDNNIERKDMKSFYAAKQSITTGYLARAVVNNVLKGGELATS 366
L+ N F K NI D+ S L +A + N+ GG A +
Sbjct: 177 LNPEANRQMKAFAKKQNISLIDIDSVKTDSPLYP---LIKAELANLGMGGNPAAA 228
>1r85_A Endo-1,4-beta-xylanase; hydrolase; HET: GOL; 1.45A {Geobacillus
stearothermophilus} SCOP: c.1.8.3 PDB: 1hiz_A* 1r87_A*
3mmd_A* 1r86_A
Length = 379
Score = 27.6 bits (61), Expect = 7.8
Identities = 11/37 (29%), Positives = 17/37 (45%), Gaps = 2/37 (5%)
Query: 243 GISVQGHILPQQPTLSNMTQSELTFALLIEEILNHIT 279
GI Q HI P+ + + ++ FA L + IT
Sbjct: 230 GIGHQSHIQIGWPSEAEIEKTINMFAALGLDN--QIT 264
>1n82_A Xylanase, intra-cellular xylanase; hydrolase; 1.45A {Geobacillus
stearothermophilus} SCOP: c.1.8.3 PDB: 3mua_A* 2q8x_A*
3msd_A* 3msg_A* 3mui_A* 3ms8_A
Length = 331
Score = 27.4 bits (61), Expect = 8.1
Identities = 11/37 (29%), Positives = 18/37 (48%), Gaps = 2/37 (5%)
Query: 243 GISVQGHILPQQPTLSNMTQSELTFALLIEEILNHIT 279
GI +Q H +P+L + + +A L + HIT
Sbjct: 206 GIGMQAHWSLTRPSLDEIRAAIERYASLGVVL--HIT 240
>2uwf_A Endoxylanase, alkaline active endoxylanase; hydrolase, xylan
degradation, xylanase structure, glycosidase,
alkaliphilic; 2.10A {Bacillus halodurans} PDB: 2f8q_A
2fgl_A*
Length = 356
Score = 27.5 bits (61), Expect = 8.6
Identities = 10/78 (12%), Positives = 19/78 (24%), Gaps = 4/78 (5%)
Query: 204 GISVQGHILPQQPTLSNMTQSELTFA----LVAVWDIMIRTPEGISVQGHILPQQPTLSN 259
G+ Q HI P++ + S F V ++ + +
Sbjct: 220 GVGHQSHIQIGWPSIEDTRASFEKFTSLGLDNQVTELDMSLYGWPPTGAYTSYDDIPEEL 279
Query: 260 MTQSELTFALLIEEILNH 277
+ L E
Sbjct: 280 FQAQADRYDQLFELYEEL 297
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.137 0.410
Gapped
Lambda K H
0.267 0.0469 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,986,847
Number of extensions: 363171
Number of successful extensions: 677
Number of sequences better than 10.0: 1
Number of HSP's gapped: 674
Number of HSP's successfully gapped: 25
Length of query: 385
Length of database: 6,701,793
Length adjustment: 95
Effective length of query: 290
Effective length of database: 4,049,298
Effective search space: 1174296420
Effective search space used: 1174296420
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.8 bits)