RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy16569
         (385 letters)



>d1euva_ d.3.1.7 (A:) Ulp1 protease C-terminal domain {Baker's yeast
           (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 221

 Score = 27.5 bits (60), Expect = 2.3
 Identities = 13/75 (17%), Positives = 28/75 (37%), Gaps = 1/75 (1%)

Query: 128 EAIKVYLEIIGKDVNAMYNYSPFEIRQLL-WKVLNVREWADEEHLTVLQLRRLEGCWCRV 186
             I+ +++ I K       ++ F    L       VR W   +   + +L ++       
Sbjct: 52  TIIEFFMKYIEKSTPNTVAFNSFFYTNLSERGYQGVRRWMKRKKTQIDKLDKIFTPINLN 111

Query: 187 PSHFYNQVWDIMIRT 201
            SH+   + D+  +T
Sbjct: 112 QSHWALGIIDLKKKT 126


>d1w32a_ c.1.8.3 (A:) Xylanase A, catalytic core {Pseudomonas
           fluorescens [TaxId: 294]}
          Length = 346

 Score = 27.9 bits (61), Expect = 2.4
 Identities = 9/37 (24%), Positives = 18/37 (48%)

Query: 243 GISVQGHILPQQPTLSNMTQSELTFALLIEEILNHIT 279
           G+  Q H++   P+++N+ Q+      L   +   IT
Sbjct: 209 GVGFQMHVMNDYPSIANIRQAMQKIVALSPTLKIKIT 245


>d1ur1a_ c.1.8.3 (A:) Xylanase {Cellvibrio mixtus [TaxId: 39650]}
          Length = 350

 Score = 27.1 bits (59), Expect = 4.3
 Identities = 11/37 (29%), Positives = 20/37 (54%), Gaps = 2/37 (5%)

Query: 243 GISVQGHILPQQPTLSNMTQSELTFALLIEEILNHIT 279
           G+ +QGH+    P ++ + +S + FA L   +  H T
Sbjct: 202 GLGIQGHLGIDTPPIAEIEKSIIAFAKLGLRV--HFT 236


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.321    0.137    0.410 

Gapped
Lambda     K      H
   0.267   0.0479    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,474,323
Number of extensions: 70946
Number of successful extensions: 158
Number of sequences better than 10.0: 1
Number of HSP's gapped: 158
Number of HSP's successfully gapped: 6
Length of query: 385
Length of database: 2,407,596
Length adjustment: 87
Effective length of query: 298
Effective length of database: 1,213,086
Effective search space: 361499628
Effective search space used: 361499628
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.2 bits)