BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy16571
(150 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3ZYI|A Chain A, Netring2 In Complex With Ngl2
Length = 452
Score = 45.4 bits (106), Expect = 1e-05, Method: Composition-based stats.
Identities = 33/126 (26%), Positives = 57/126 (45%), Gaps = 7/126 (5%)
Query: 11 LKRLEITGASNLTRVRKGAFADXXXXXXXXXXXXXXXXIIEEDALVGLPNLYHLNLKENA 70
L+ LE++G ++ +R G+F +IE +A GL +L LNL N
Sbjct: 220 LEELEMSG-NHFPEIRPGSF-HGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNN 277
Query: 71 FTSFSESMLA-WPELRTIDIAENPIECGCNIL----WLREMLVRRNTSAVFCNSPAPLKY 125
+S + L + + NP C C+IL WLRE + +T C++P ++
Sbjct: 278 LSSLPHDLFTPLRYLVELHLHHNPWNCDCDILWLAWWLREYIPTNSTCCGRCHAPMHMRG 337
Query: 126 KSLISL 131
+ L+ +
Sbjct: 338 RYLVEV 343
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 44.3 bits (103), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 50/119 (42%), Gaps = 7/119 (5%)
Query: 11 LKRLEITGASNLTRVRKGAFADXXXXXXXXXXXXXXXXIIEEDALVGLPNLYHLNLKENA 70
L L+++G ++L+ +R G+F +IE +A L +L +NL N
Sbjct: 209 LDELDLSG-NHLSAIRPGSFQGLMHLQKLWMIQSQIQ-VIERNAFDNLQSLVEINLAHNN 266
Query: 71 FTSFSESMLA-WPELRTIDIAENPIECGCNILWL----REMLVRRNTSAVFCNSPAPLK 124
T + L I + NP C C+ILWL ++M CN+P LK
Sbjct: 267 LTLLPHDLFTPLHHLERIHLHHNPWNCNCDILWLSWWIKDMAPSNTACCARCNTPPNLK 325
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 44.3 bits (103), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 55/130 (42%), Gaps = 10/130 (7%)
Query: 3 KEVKGLSYLKRLE---ITGASNLTRVRKGAFADXXXXXXXXXXXXXXXXIIEEDALVGLP 59
K++ L+ L RLE ++G + L +R G+F IE +A L
Sbjct: 169 KDIPNLTALVRLEELELSG-NRLDLIRPGSFQGLTSLRKLWLMHAQVA-TIERNAFDDLK 226
Query: 60 NLYHLNLKENAFTSFSESMLA-WPELRTIDIAENPIECGCNIL----WLREMLVRRNTSA 114
+L LNL N S + L + + NP C C++L WL+E + T
Sbjct: 227 SLEELNLSHNNLMSLPHDLFTPLHRLERVHLNHNPWHCNCDVLWLSWWLKETVPSNTTCC 286
Query: 115 VFCNSPAPLK 124
C++PA LK
Sbjct: 287 ARCHAPAGLK 296
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 43.9 bits (102), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 55/130 (42%), Gaps = 10/130 (7%)
Query: 3 KEVKGLSYLKRLE---ITGASNLTRVRKGAFADXXXXXXXXXXXXXXXXIIEEDALVGLP 59
K++ L+ L RLE ++G + L +R G+F IE +A L
Sbjct: 169 KDIPNLTALVRLEELELSG-NRLDLIRPGSFQGLTSLRKLWLMHAQVA-TIERNAFDDLK 226
Query: 60 NLYHLNLKENAFTSFSESMLA-WPELRTIDIAENPIECGCNIL----WLREMLVRRNTSA 114
+L LNL N S + L + + NP C C++L WL+E + T
Sbjct: 227 SLEELNLSHNNLMSLPHDLFTPLHRLERVHLNHNPWHCNCDVLWLSWWLKETVPSNTTCC 286
Query: 115 VFCNSPAPLK 124
C++PA LK
Sbjct: 287 ARCHAPAGLK 296
>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit
Length = 192
Score = 37.7 bits (86), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 37/78 (47%), Gaps = 3/78 (3%)
Query: 50 IEEDALVGLPNLYHLNLKENAFTS-FSESMLAWPELRTIDIAENPIECGCNILWLREMLV 108
I +GL L LNL +N + S L ++++A NP C C++ W E L
Sbjct: 93 ISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWFAEWLR 152
Query: 109 RR--NTSAVFCNSPAPLK 124
++ N A C +P+ ++
Sbjct: 153 KKSLNGGAARCGAPSKVR 170
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 37.4 bits (85), Expect = 0.003, Method: Composition-based stats.
Identities = 23/75 (30%), Positives = 36/75 (48%), Gaps = 3/75 (4%)
Query: 49 IIEEDALVGLPNLYHLNLKENAFTSFSESML-AWPELRTIDIAENPIECGCNILWL--RE 105
++E A GL L LN+ N T+ ES+ + L T+ + NP+ C C +LW+ R
Sbjct: 286 VVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACDCRLLWVFRRR 345
Query: 106 MLVRRNTSAVFCNSP 120
+ N C +P
Sbjct: 346 WRLNFNRQQPTCATP 360
>pdb|2V9S|A Chain A, Second Lrr Domain Of Human Slit2
pdb|2V9S|B Chain B, Second Lrr Domain Of Human Slit2
pdb|2V9S|C Chain C, Second Lrr Domain Of Human Slit2
pdb|2V9S|D Chain D, Second Lrr Domain Of Human Slit2
Length = 220
Score = 37.4 bits (85), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 39/79 (49%), Gaps = 3/79 (3%)
Query: 53 DALVGLPNLYHLNLKENAFTSFSESMLA-WPELRTIDIAENPIECGCNILWLREMLVRR- 110
DA L NL L+L +N + ++ + ++T+ +A+NP C C++ WL + L
Sbjct: 122 DAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFICDCHLKWLADYLHTNP 181
Query: 111 -NTSAVFCNSPAPLKYKSL 128
TS C SP L K +
Sbjct: 182 IETSGARCTSPRRLANKRI 200
>pdb|2V9T|B Chain B, Complex Between The Second Lrr Domain Of Slit2 And The
First Ig Domain From Robo1
Length = 220
Score = 37.4 bits (85), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 39/79 (49%), Gaps = 3/79 (3%)
Query: 53 DALVGLPNLYHLNLKENAFTSFSESMLA-WPELRTIDIAENPIECGCNILWLREMLVRR- 110
DA L NL L+L +N + ++ + ++T+ +A+NP C C++ WL + L
Sbjct: 122 DAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFICDCHLKWLADYLHTNP 181
Query: 111 -NTSAVFCNSPAPLKYKSL 128
TS C SP L K +
Sbjct: 182 IETSGARCTSPRRLANKRI 200
>pdb|2V70|A Chain A, Third Lrr Domain Of Human Slit2
pdb|2V70|B Chain B, Third Lrr Domain Of Human Slit2
pdb|2V70|C Chain C, Third Lrr Domain Of Human Slit2
pdb|2V70|D Chain D, Third Lrr Domain Of Human Slit2
Length = 220
Score = 37.0 bits (84), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 42/90 (46%), Gaps = 3/90 (3%)
Query: 50 IEEDALVGLPNLYHLNLKENAFTSFSESML-AWPELRTIDIAENPIECGCNILWLREMLV 108
+ D+ +GL ++ L+L +N T+ + L T+++ NP C C + WL E L
Sbjct: 120 VGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCYLAWLGEWLR 179
Query: 109 RRN--TSAVFCNSPAPLKYKSLISLSAEDL 136
++ T C P LK + ++ +D
Sbjct: 180 KKRIVTGNPRCQKPYFLKEIPIQDVAIQDF 209
>pdb|2IFG|A Chain A, Structure Of The Extracellular Segment Of Human Trka In
Complex With Nerve Growth Factor
pdb|2IFG|B Chain B, Structure Of The Extracellular Segment Of Human Trka In
Complex With Nerve Growth Factor
Length = 347
Score = 35.8 bits (81), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 35/81 (43%), Gaps = 4/81 (4%)
Query: 49 IIEEDALVGLPNLYHLNLKENAFTSFSESMLAWPELRTIDIAENPIECGCNILWLR---- 104
+ DA P L LNL NA S S + L+ + ++ NP+ C C + WL+
Sbjct: 70 FVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSGNPLHCSCALRWLQRWEE 129
Query: 105 EMLVRRNTSAVFCNSPAPLKY 125
E L + C+ PL +
Sbjct: 130 EGLGGVPEQKLQCHGQGPLAH 150
>pdb|3RFE|A Chain A, Crystal Structure Of Glycoprotein Gpib Ectodomain
pdb|3RFE|B Chain B, Crystal Structure Of Glycoprotein Gpib Ectodomain
Length = 130
Score = 35.0 bits (79), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 37/79 (46%), Gaps = 5/79 (6%)
Query: 63 HLNLKENAFTSFSESML-AWPELRTIDIAENPIECGCNILWLREMLVRRNTSAVF----C 117
L L N T+ +L A P LRT + NP C C ++ LR L R A + C
Sbjct: 35 ELVLTGNNLTALPPGLLDALPALRTAHLGANPWRCDCRLVPLRAWLAGRPERAPYRDLRC 94
Query: 118 NSPAPLKYKSLISLSAEDL 136
+P L+ + L L+ ++L
Sbjct: 95 VAPPALRGRLLPYLAEDEL 113
>pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex
pdb|3T6Q|B Chain B, Crystal Structure Of Mouse Rp105MD-1 Complex
Length = 606
Score = 33.9 bits (76), Expect = 0.031, Method: Composition-based stats.
Identities = 23/78 (29%), Positives = 41/78 (52%), Gaps = 7/78 (8%)
Query: 53 DALVGLPNLYHLNLKENAFTSFSESMLA-WPELRTIDIAENPIECGCN----ILWLREML 107
+AL L +Y LNL N + S+L + RTI++ +NP++C C+ + W +E +
Sbjct: 518 EALSHLKGIY-LNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCSNIYFLEWYKENM 576
Query: 108 VR-RNTSAVFCNSPAPLK 124
+ +T C +P L+
Sbjct: 577 QKLEDTEDTLCENPPLLR 594
>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|E Chain E, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|I Chain I, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|M Chain M, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|B Chain B, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|F Chain F, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|J Chain J, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|N Chain N, Crystal Structure Of The Rp105MD-1 Complex
Length = 612
Score = 32.7 bits (73), Expect = 0.076, Method: Composition-based stats.
Identities = 25/104 (24%), Positives = 43/104 (41%), Gaps = 29/104 (27%)
Query: 50 IEEDALVGLPNLYHLNLKENAFTSFSESML------------------------AWPELR 85
I++ A GL N+ HL+L N+ T S L A +
Sbjct: 490 IDQQAFHGLRNVNHLDLSHNSLTGDSMDALSHLKGLYLNMASNNIRIIPPHLLPALSQQS 549
Query: 86 TIDIAENPIECGCN----ILWLREMLVR-RNTSAVFCNSPAPLK 124
I+++ NP++C C+ I W +E L + ++ C +P L+
Sbjct: 550 IINLSHNPLDCTCSNIHFITWYKENLHKLEDSEETTCANPPSLR 593
Score = 26.2 bits (56), Expect = 7.6, Method: Composition-based stats.
Identities = 19/49 (38%), Positives = 27/49 (55%), Gaps = 6/49 (12%)
Query: 55 LVGLPNLYHLNLKENAFT--SFSESMLAWPELRTIDIAENPIECGCNIL 101
L GL +L HLNL+ N+F S S++ L L+ + E I CN+L
Sbjct: 444 LAGLQDLRHLNLQGNSFQDGSISKTNL----LQMVGSLEILILSSCNLL 488
>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex
pdb|3B2D|B Chain B, Crystal Structure Of Human Rp105MD-1 Complex
Length = 603
Score = 32.7 bits (73), Expect = 0.081, Method: Composition-based stats.
Identities = 22/78 (28%), Positives = 39/78 (50%), Gaps = 7/78 (8%)
Query: 53 DALVGLPNLYHLNLKENAFTSFSESMLA-WPELRTIDIAENPIECGCN----ILWLREML 107
D+L L +Y LNL N+ S +L + TI+++ NP++C C+ + W +E L
Sbjct: 515 DSLSHLKGIY-LNLAANSINIISPRLLPILSQQSTINLSHNPLDCTCSNIHFLTWYKENL 573
Query: 108 VR-RNTSAVFCNSPAPLK 124
+ + C +P L+
Sbjct: 574 HKLEGSEETTCANPPSLR 591
Score = 26.6 bits (57), Expect = 6.0, Method: Composition-based stats.
Identities = 12/17 (70%), Positives = 12/17 (70%)
Query: 55 LVGLPNLYHLNLKENAF 71
L GLP L HLNLK N F
Sbjct: 442 LAGLPVLRHLNLKGNHF 458
>pdb|3REZ|A Chain A, Glycoprotein Gpib Variant
pdb|3REZ|B Chain B, Glycoprotein Gpib Variant
pdb|3REZ|C Chain C, Glycoprotein Gpib Variant
pdb|3REZ|D Chain D, Glycoprotein Gpib Variant
Length = 129
Score = 32.7 bits (73), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 40/89 (44%), Gaps = 6/89 (6%)
Query: 54 ALVGLP-NLYHLNLKENAFTSFSESML-AWPELRTIDIAENPIECGCNILWLREMLVRRN 111
AL LP L L N TS P+LRT + NP C C++ +LR L R
Sbjct: 24 ALPALPARTTELVLTGNNLTSVPPGAFDHLPQLRTAHLGANPWRCDCSLTYLRLWLEDRP 83
Query: 112 TSAVF----CNSPAPLKYKSLISLSAEDL 136
A + C +P L+ + L L+ ++L
Sbjct: 84 ERAPYRDLRCVAPPALRGRLLPYLAEDEL 112
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 31.2 bits (69), Expect = 0.22, Method: Composition-based stats.
Identities = 20/70 (28%), Positives = 35/70 (50%), Gaps = 9/70 (12%)
Query: 60 NLYHLNLKENAFTSFSESMLAWP--ELRTIDIAENPIECGC-NILWLREMLVRRNT---- 112
+L LNL++N TS + + P L ++D+ NP +C C +I W + + +T
Sbjct: 585 SLRSLNLQKNLITSVEKDVFGPPFQNLNSLDMRFNPFDCTCESISWFVNWINQTHTNISE 644
Query: 113 --SAVFCNSP 120
+ CN+P
Sbjct: 645 LSTHYLCNTP 654
>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand
Binding Domain
Length = 705
Score = 30.8 bits (68), Expect = 0.34, Method: Composition-based stats.
Identities = 21/70 (30%), Positives = 34/70 (48%), Gaps = 9/70 (12%)
Query: 60 NLYHLNLKENAFTSFSESML--AWPELRTIDIAENPIECGC-NILWLREMLVRRNT---- 112
+L LNL++N TS + + A+ L +D+ NP +C C +I W + +T
Sbjct: 590 SLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCESIAWFVNWINETHTNIPE 649
Query: 113 --SAVFCNSP 120
S CN+P
Sbjct: 650 LSSHYLCNTP 659
>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure
Length = 680
Score = 30.8 bits (68), Expect = 0.34, Method: Composition-based stats.
Identities = 21/70 (30%), Positives = 34/70 (48%), Gaps = 9/70 (12%)
Query: 60 NLYHLNLKENAFTSFSESML--AWPELRTIDIAENPIECGC-NILWLREMLVRRNT---- 112
+L LNL++N TS + + A+ L +D+ NP +C C +I W + +T
Sbjct: 585 SLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCESIAWFVNWINETHTNIPE 644
Query: 113 --SAVFCNSP 120
S CN+P
Sbjct: 645 LSSHYLCNTP 654
>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form1)
pdb|3ULV|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form2)
Length = 694
Score = 30.8 bits (68), Expect = 0.34, Method: Composition-based stats.
Identities = 21/70 (30%), Positives = 34/70 (48%), Gaps = 9/70 (12%)
Query: 60 NLYHLNLKENAFTSFSESML--AWPELRTIDIAENPIECGC-NILWLREMLVRRNT---- 112
+L LNL++N TS + + A+ L +D+ NP +C C +I W + +T
Sbjct: 595 SLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCESIAWFVNWINETHTNIPE 654
Query: 113 --SAVFCNSP 120
S CN+P
Sbjct: 655 LSSHYLCNTP 664
>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
pdb|3KJ4|D Chain D, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
Length = 286
Score = 30.0 bits (66), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 31/64 (48%), Gaps = 2/64 (3%)
Query: 75 SESMLAWPELRTIDIAENPIECGCNI--LWLREMLVRRNTSAVFCNSPAPLKYKSLISLS 132
+E ++ L+ + + +NP C C LW R ++S V CN P L + L L+
Sbjct: 217 AEVLVPLRSLQYLRLNDNPWVCDCRARPLWAWLQKFRGSSSEVPCNLPQRLAGRDLKRLA 276
Query: 133 AEDL 136
A DL
Sbjct: 277 ASDL 280
>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
pdb|3V47|B Chain B, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
Length = 455
Score = 29.6 bits (65), Expect = 0.63, Method: Composition-based stats.
Identities = 25/94 (26%), Positives = 41/94 (43%), Gaps = 8/94 (8%)
Query: 52 EDALVGLPNLYHLNLKENAFTSFSESML-AWPELRTIDIAENPIECGCNIL-----WLRE 105
+ + +GLPNL L L N S + + L+ I + NP +C C + WL +
Sbjct: 364 DQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNK 423
Query: 106 MLVRRNTSAVFCNSPAPLKYKSLISLSAEDLGSR 139
+ SA S P+ +S+I ++ L R
Sbjct: 424 NSQKEQGSAKCSGSGKPV--RSIICPTSASLVPR 455
>pdb|3L6B|A Chain A, X-Ray Crystal Structure Of Human Serine Racemase In
Complex Malonate A Potent Inhibitor
Length = 346
Score = 27.7 bits (60), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 29/63 (46%), Gaps = 6/63 (9%)
Query: 58 LPNLYHLNLKENAFTSFSESMLAWPELRTI-----DIAENPIECGCNILWLREMLVRRNT 112
+PNLY + S S + WP +R + + E+ I+C ++W R L+ T
Sbjct: 227 MPNLYPPETIADGVKS-SIGLNTWPIIRDLVDDIFTVTEDEIKCATQLVWERMKLLIEPT 285
Query: 113 SAV 115
+ V
Sbjct: 286 AGV 288
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 27.3 bits (59), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
Query: 55 LVGLPNLYHLNLKENAFTSFSESMLAWPELRTIDIAENPIECGCNILWLREMLVRRNTSA 114
L GL NL L L+EN+ + + L + NP C C IL+ R L + N
Sbjct: 168 LNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWLCNCEILYFRRWL-QDNAEN 226
Query: 115 VF 116
V+
Sbjct: 227 VY 228
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 27.3 bits (59), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
Query: 55 LVGLPNLYHLNLKENAFTSFSESMLAWPELRTIDIAENPIECGCNILWLREMLVRRNTSA 114
L GL NL L L+EN+ + + L + NP C C IL+ R L + N
Sbjct: 168 LNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWLCNCEILYFRRWL-QDNAEN 226
Query: 115 VF 116
V+
Sbjct: 227 VY 228
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 27.3 bits (59), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
Query: 55 LVGLPNLYHLNLKENAFTSFSESMLAWPELRTIDIAENPIECGCNILWLREMLVRRNTSA 114
L GL NL L L+EN+ + + L + NP C C IL+ R L + N
Sbjct: 168 LNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWLCNCEILYFRRWL-QDNAEN 226
Query: 115 VF 116
V+
Sbjct: 227 VY 228
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 27.3 bits (59), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
Query: 55 LVGLPNLYHLNLKENAFTSFSESMLAWPELRTIDIAENPIECGCNILWLREMLVRRNTSA 114
L GL NL L L+EN+ + + L + NP C C IL+ R L + N
Sbjct: 168 LNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWLCNCEILYFRRWL-QDNAEN 226
Query: 115 VF 116
V+
Sbjct: 227 VY 228
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 27.3 bits (59), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
Query: 57 GLPNLYHLNLKENAFTSFSESML-AWPELRTIDIAENPIECGCNILWLRE 105
GL +L L+L N + E L + I NP+ C CN+ WL +
Sbjct: 100 GLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYCDCNMQWLSD 149
>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
Length = 290
Score = 27.3 bits (59), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
Query: 55 LVGLPNLYHLNLKENAFTSFSESMLAWPELRTIDIAENPIECGCNILWLREMLVRRNTSA 114
L GL NL L L+EN+ + + L + NP C C IL+ R L + N
Sbjct: 168 LNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWLCNCEILYFRRWL-QDNAEN 226
Query: 115 VF 116
V+
Sbjct: 227 VY 228
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 27.3 bits (59), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
Query: 55 LVGLPNLYHLNLKENAFTSFSESMLAWPELRTIDIAENPIECGCNILWLREMLVRRNTSA 114
L GL NL L L+EN+ + + L + NP C C IL+ R L + N
Sbjct: 168 LNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWLCNCEILYFRRWL-QDNAEN 226
Query: 115 VF 116
V+
Sbjct: 227 VY 228
>pdb|3L6R|A Chain A, The Structure Of Mammalian Serine Racemase: Evidence For
Conformational Changes Upon Inhibitor Binding
Length = 346
Score = 27.3 bits (59), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 6/62 (9%)
Query: 59 PNLYHLNLKENAFTSFSESMLAWPELRTI-----DIAENPIECGCNILWLREMLVRRNTS 113
PNLY + S S + WP +R + + E+ I+C ++W R L+ T+
Sbjct: 228 PNLYPPETIADGVKS-SIGLNTWPIIRDLVDDIFTVTEDEIKCATQLVWERXKLLIEPTA 286
Query: 114 AV 115
V
Sbjct: 287 GV 288
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 27.3 bits (59), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
Query: 55 LVGLPNLYHLNLKENAFTSFSESMLAWPELRTIDIAENPIECGCNILWLREMLVRRNTSA 114
L GL NL L L+EN+ + + L + NP C C IL+ R L + N
Sbjct: 168 LNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWLCNCEILYFRRWL-QDNAEN 226
Query: 115 VF 116
V+
Sbjct: 227 VY 228
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 26.9 bits (58), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
Query: 50 IEEDALVGLPNLYHLNLKENAFTSFSESML-AWPELRTIDIAENPIECGCN-ILWLREML 107
+ E A L L L L N E + +L+ + + ENP +C CN I+++ + L
Sbjct: 172 VPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCTCNGIIYMAKWL 231
Query: 108 VRR 110
++
Sbjct: 232 KKK 234
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 26.9 bits (58), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
Query: 55 LVGLPNLYHLNLKENAFTSFSESMLAWPELRTIDIAENPIECGCNILWLREMLVRRNTSA 114
L GL NL L L+EN+ + + L + NP C C IL+ R L + N
Sbjct: 168 LNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWLCNCEILYFRRWL-QDNAEN 226
Query: 115 VF 116
V+
Sbjct: 227 VY 228
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 26.9 bits (58), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 24/53 (45%)
Query: 55 LVGLPNLYHLNLKENAFTSFSESMLAWPELRTIDIAENPIECGCNILWLREML 107
L GL NL L L+EN+ + + L + NP C C IL+ R L
Sbjct: 168 LNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWLCNCEILYFRRWL 220
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 26.9 bits (58), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
Query: 55 LVGLPNLYHLNLKENAFTSFSESMLAWPELRTIDIAENPIECGCNILWLREMLVRRNTSA 114
L GL NL L L+EN+ + + L + NP C C IL+ R L + N
Sbjct: 169 LNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWLCNCEILYFRRWL-QDNAEN 227
Query: 115 VF 116
V+
Sbjct: 228 VY 229
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.392
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,543,249
Number of Sequences: 62578
Number of extensions: 109899
Number of successful extensions: 263
Number of sequences better than 100.0: 58
Number of HSP's better than 100.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 33
Number of HSP's that attempted gapping in prelim test: 228
Number of HSP's gapped (non-prelim): 64
length of query: 150
length of database: 14,973,337
effective HSP length: 90
effective length of query: 60
effective length of database: 9,341,317
effective search space: 560479020
effective search space used: 560479020
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.7 bits)