Query psy16571
Match_columns 150
No_of_seqs 224 out of 2647
Neff 10.2
Searched_HMMs 46136
Date Fri Aug 16 16:26:15 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16571.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/16571hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4237|consensus 99.9 1E-23 2.2E-28 151.9 5.3 138 4-143 269-408 (498)
2 KOG4194|consensus 99.8 4E-21 8.6E-26 144.6 3.7 136 3-140 359-500 (873)
3 KOG4237|consensus 99.6 2.2E-17 4.8E-22 119.5 -1.4 137 1-139 83-247 (498)
4 TIGR00864 PCC polycystin catio 99.4 3.1E-13 6.8E-18 115.8 5.1 78 65-142 1-84 (2740)
5 PF13855 LRR_8: Leucine rich r 99.4 7E-13 1.5E-17 73.6 3.7 61 9-71 1-61 (61)
6 PF13855 LRR_8: Leucine rich r 99.2 2.1E-11 4.6E-16 67.5 4.0 60 34-94 1-61 (61)
7 PF14580 LRR_9: Leucine-rich r 99.2 5.6E-11 1.2E-15 79.1 5.0 90 7-100 40-131 (175)
8 PLN00113 leucine-rich repeat r 99.1 1.8E-10 3.8E-15 94.7 5.9 96 2-99 492-588 (968)
9 KOG4194|consensus 99.1 2.6E-11 5.5E-16 92.5 0.0 74 3-78 263-336 (873)
10 PLN03150 hypothetical protein; 99.0 5.4E-10 1.2E-14 88.0 6.5 84 11-96 420-504 (623)
11 smart00082 LRRCT Leucine rich 99.0 4.1E-10 8.8E-15 60.0 2.6 47 92-139 1-51 (51)
12 KOG0472|consensus 99.0 1.1E-10 2.3E-15 85.7 0.1 89 4-95 453-541 (565)
13 KOG0617|consensus 98.9 3E-11 6.5E-16 79.6 -2.9 83 9-95 33-115 (264)
14 PLN00113 leucine-rich repeat r 98.9 2.2E-09 4.8E-14 88.3 5.6 88 4-93 159-247 (968)
15 PLN03150 hypothetical protein; 98.8 7.5E-09 1.6E-13 81.6 6.1 95 2-98 435-531 (623)
16 PF14580 LRR_9: Leucine-rich r 98.8 1.7E-09 3.8E-14 72.0 2.1 93 6-104 16-110 (175)
17 KOG0617|consensus 98.8 2.8E-10 6.1E-15 75.0 -3.3 89 2-93 72-161 (264)
18 KOG0472|consensus 98.8 6.2E-10 1.3E-14 81.8 -1.9 102 4-109 223-330 (565)
19 KOG0444|consensus 98.7 1.5E-09 3.2E-14 84.0 -0.5 92 2-96 96-187 (1255)
20 KOG0618|consensus 98.6 2.9E-09 6.4E-14 84.8 -1.7 87 5-94 379-488 (1081)
21 KOG0444|consensus 98.6 2.1E-09 4.6E-14 83.2 -2.5 91 2-96 215-305 (1255)
22 KOG0618|consensus 98.5 3.8E-09 8.2E-14 84.2 -3.4 92 8-101 358-449 (1081)
23 KOG1644|consensus 98.5 3.2E-07 6.9E-12 61.9 4.7 82 10-95 43-126 (233)
24 PRK15387 E3 ubiquitin-protein 98.4 4.7E-07 1E-11 72.7 4.2 77 10-96 383-459 (788)
25 PF12799 LRR_4: Leucine Rich r 98.4 8.4E-07 1.8E-11 45.6 3.8 38 35-74 2-39 (44)
26 PF12799 LRR_4: Leucine Rich r 98.3 6.7E-07 1.5E-11 46.0 2.8 37 59-95 1-37 (44)
27 KOG1259|consensus 98.3 2.2E-07 4.8E-12 66.5 1.0 82 10-96 285-366 (490)
28 PLN03210 Resistant to P. syrin 98.3 2.8E-06 6.1E-11 71.5 7.0 84 2-91 795-878 (1153)
29 KOG1859|consensus 98.2 9E-08 2E-12 75.3 -2.4 85 4-94 182-266 (1096)
30 KOG4579|consensus 98.1 1.1E-07 2.5E-12 60.5 -2.7 86 12-99 30-117 (177)
31 KOG1259|consensus 98.1 5.8E-07 1.3E-11 64.4 0.4 91 6-100 304-417 (490)
32 KOG0532|consensus 98.1 4E-07 8.6E-12 69.8 -1.1 88 4-96 161-248 (722)
33 PRK15370 E3 ubiquitin-protein 98.1 9.8E-06 2.1E-10 65.3 6.5 77 10-96 221-297 (754)
34 KOG1644|consensus 98.1 5E-06 1.1E-10 56.3 4.1 88 3-92 58-150 (233)
35 KOG1859|consensus 98.1 1.4E-07 2.9E-12 74.3 -4.4 88 5-97 205-294 (1096)
36 PLN03210 Resistant to P. syrin 98.0 2.7E-05 5.9E-10 65.7 7.8 83 5-91 630-713 (1153)
37 PRK15370 E3 ubiquitin-protein 98.0 1.8E-05 3.8E-10 63.9 5.9 78 9-96 199-276 (754)
38 KOG4579|consensus 97.9 8.3E-07 1.8E-11 56.7 -1.6 85 7-94 51-135 (177)
39 PF13306 LRR_5: Leucine rich r 97.9 4.8E-05 1E-09 47.8 6.4 86 2-92 5-91 (129)
40 cd00116 LRR_RI Leucine-rich re 97.9 2.2E-06 4.9E-11 62.0 0.0 39 6-45 78-119 (319)
41 PRK15387 E3 ubiquitin-protein 97.8 3.1E-05 6.8E-10 62.5 5.2 17 59-75 302-318 (788)
42 cd00116 LRR_RI Leucine-rich re 97.8 1.3E-05 2.8E-10 58.0 2.6 85 9-95 137-234 (319)
43 KOG0531|consensus 97.7 1.5E-05 3.2E-10 60.3 1.4 83 5-93 91-173 (414)
44 PF13306 LRR_5: Leucine rich r 97.7 0.00015 3.2E-09 45.6 5.5 85 2-91 28-112 (129)
45 KOG0531|consensus 97.7 2.6E-05 5.7E-10 58.9 2.3 97 5-107 114-211 (414)
46 COG4886 Leucine-rich repeat (L 97.6 3E-05 6.5E-10 58.1 2.3 79 10-92 141-219 (394)
47 KOG0532|consensus 97.5 4.4E-06 9.6E-11 64.3 -3.4 103 2-109 114-242 (722)
48 KOG4658|consensus 97.5 3.5E-05 7.5E-10 63.2 1.2 85 5-92 567-652 (889)
49 COG4886 Leucine-rich repeat (L 97.5 3.8E-05 8.3E-10 57.5 1.3 87 8-98 115-202 (394)
50 KOG4658|consensus 97.4 5.1E-05 1.1E-09 62.3 1.4 84 9-94 545-630 (889)
51 PF01463 LRRCT: Leucine rich r 97.2 0.00017 3.6E-09 32.3 1.0 25 114-139 1-25 (25)
52 KOG2123|consensus 97.0 1.9E-05 4E-10 56.2 -4.7 82 7-94 17-100 (388)
53 KOG3207|consensus 97.0 0.00032 6.9E-09 52.7 1.3 85 8-94 221-313 (505)
54 KOG3207|consensus 96.9 0.0004 8.6E-09 52.2 1.5 91 5-97 242-341 (505)
55 KOG2739|consensus 96.7 0.0017 3.6E-08 45.7 3.0 84 7-94 41-128 (260)
56 PF00560 LRR_1: Leucine Rich R 96.6 0.00096 2.1E-08 28.7 1.0 17 11-28 2-18 (22)
57 PF00560 LRR_1: Leucine Rich R 96.5 0.0013 2.8E-08 28.3 1.1 17 61-77 2-18 (22)
58 PF13504 LRR_7: Leucine rich r 96.5 0.0019 4.1E-08 26.0 1.3 16 60-75 2-17 (17)
59 KOG3665|consensus 96.3 0.0019 4.1E-08 52.0 1.7 87 8-98 147-236 (699)
60 smart00369 LRR_TYP Leucine-ric 96.3 0.0029 6.2E-08 28.3 1.6 21 59-79 2-22 (26)
61 smart00370 LRR Leucine-rich re 96.3 0.0029 6.2E-08 28.3 1.6 21 59-79 2-22 (26)
62 KOG2982|consensus 96.2 0.0014 3.1E-08 47.3 0.5 82 9-92 71-156 (418)
63 KOG3665|consensus 96.2 0.0027 5.7E-08 51.2 2.1 85 6-94 170-262 (699)
64 smart00370 LRR Leucine-rich re 96.2 0.003 6.4E-08 28.2 1.3 21 34-55 2-22 (26)
65 smart00369 LRR_TYP Leucine-ric 96.2 0.003 6.4E-08 28.2 1.3 21 34-55 2-22 (26)
66 KOG2123|consensus 95.9 0.00037 8E-09 49.8 -3.8 63 6-72 38-101 (388)
67 KOG2739|consensus 95.1 0.015 3.3E-07 41.0 2.1 66 29-97 38-106 (260)
68 PRK15386 type III secretion pr 94.7 0.077 1.7E-06 40.4 4.9 63 7-77 50-113 (426)
69 KOG1909|consensus 94.3 0.015 3.3E-07 42.8 0.5 15 81-95 212-226 (382)
70 KOG1909|consensus 93.5 0.039 8.5E-07 40.7 1.4 83 9-93 157-252 (382)
71 PRK15386 type III secretion pr 93.5 0.14 3E-06 39.0 4.2 58 10-77 73-133 (426)
72 KOG0473|consensus 92.9 0.0014 2.9E-08 45.9 -6.4 84 8-95 41-124 (326)
73 smart00364 LRR_BAC Leucine-ric 92.6 0.082 1.8E-06 23.7 1.2 18 59-76 2-19 (26)
74 KOG2982|consensus 92.1 0.12 2.6E-06 37.8 2.2 83 13-97 49-138 (418)
75 smart00365 LRR_SD22 Leucine-ri 90.0 0.34 7.3E-06 21.7 1.9 16 59-74 2-17 (26)
76 COG5238 RNA1 Ran GTPase-activa 88.6 0.47 1E-05 34.4 2.7 67 4-72 87-170 (388)
77 KOG3763|consensus 87.1 0.43 9.3E-06 37.5 1.9 64 30-94 214-282 (585)
78 KOG3864|consensus 86.4 0.097 2.1E-06 35.9 -1.6 67 36-106 103-175 (221)
79 PF13516 LRR_6: Leucine Rich r 86.3 0.5 1.1E-05 20.3 1.2 12 60-71 3-14 (24)
80 KOG3864|consensus 85.7 0.15 3.1E-06 35.1 -1.1 84 10-94 102-188 (221)
81 smart00368 LRR_RI Leucine rich 79.4 1.8 3.9E-05 19.4 1.7 11 84-94 4-14 (28)
82 KOG2120|consensus 78.6 0.12 2.6E-06 37.8 -3.7 63 7-70 208-271 (419)
83 TIGR00864 PCC polycystin catio 77.2 2 4.4E-05 40.1 2.5 30 15-45 1-30 (2740)
84 COG5238 RNA1 Ran GTPase-activa 75.3 5.7 0.00012 29.0 3.9 67 31-98 89-173 (388)
85 KOG3763|consensus 71.3 2.3 5.1E-05 33.6 1.3 64 7-72 216-283 (585)
86 KOG2120|consensus 69.9 1.7 3.8E-05 32.0 0.4 79 10-91 287-372 (419)
87 KOG0473|consensus 69.5 0.039 8.4E-07 38.9 -7.7 71 21-93 29-99 (326)
88 smart00367 LRR_CC Leucine-rich 63.4 6.4 0.00014 17.1 1.5 10 10-19 3-12 (26)
89 KOG1026|consensus 51.8 12 0.00027 31.1 2.2 60 50-109 100-162 (774)
90 KOG1947|consensus 47.0 12 0.00027 28.5 1.5 61 32-92 241-305 (482)
91 KOG4308|consensus 21.6 4 8.7E-05 32.0 -4.8 88 7-96 202-304 (478)
92 PF11921 DUF3439: Domain of un 21.2 1.5E+02 0.0032 18.3 2.8 31 98-132 3-44 (122)
93 TIGR02167 Liste_lipo_26 bacter 21.1 72 0.0016 13.9 1.2 14 5-18 2-15 (26)
No 1
>KOG4237|consensus
Probab=99.89 E-value=1e-23 Score=151.86 Aligned_cols=138 Identities=25% Similarity=0.488 Sum_probs=128.7
Q ss_pred cccCccccceeccCCCcCcccccCcccCCCCCCCEEeCCCCCCCCccchhhcCCCCCCCeEecCCCCccccCcCcCC-CC
Q psy16571 4 EVKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESMLA-WP 82 (150)
Q Consensus 4 ~f~~l~~L~~L~l~~n~~l~~i~~~~~~~l~~L~~l~l~~n~~l~~~~~~~~~~l~~L~~l~l~~n~l~~lp~~~~~-~~ 82 (150)
.|.+|++|++|++++| .++.|.+++|.++..++.|.+..|+ +..+....|.++..|++|+|.+|+|+.+-+..|+ +.
T Consensus 269 cf~~L~~L~~lnlsnN-~i~~i~~~aFe~~a~l~eL~L~~N~-l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~ 346 (498)
T KOG4237|consen 269 CFKKLPNLRKLNLSNN-KITRIEDGAFEGAAELQELYLTRNK-LEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLF 346 (498)
T ss_pred HHhhcccceEeccCCC-ccchhhhhhhcchhhhhhhhcCcch-HHHHHHHhhhccccceeeeecCCeeEEEecccccccc
Confidence 4889999999999999 9999999999999999999999996 9999999999999999999999999988776665 78
Q ss_pred CccEEEccCCCcccccChHHHHHHHhhcC-CCCeeeCCCccccCccccccccccCCCCCccc
Q psy16571 83 ELRTIDIAENPIECGCNILWLREMLVRRN-TSAVFCNSPAPLKYKSLISLSAEDLGSRVRAL 143 (150)
Q Consensus 83 ~L~~L~l~~N~~~c~c~~~~l~~~~~~~~-~~~~~C~~~~~l~~~~~~~~~~~~~~C~~~~~ 143 (150)
+|..|.+-+|||.|+|.+.|+.+|++.+. ..+..|..|..+++.++.++...++.|..+..
T Consensus 347 ~l~~l~l~~Np~~CnC~l~wl~~Wlr~~~~~~~~~Cq~p~~~~~~~~~dv~~~~~~c~~~ee 408 (498)
T KOG4237|consen 347 SLSTLNLLSNPFNCNCRLAWLGEWLRKKSVVGNPRCQSPGFVRQIPISDVAFGDFRCGGPEE 408 (498)
T ss_pred eeeeeehccCcccCccchHHHHHHHhhCCCCCCCCCCCCchhccccchhccccccccCCccc
Confidence 99999999999999999999999999875 78899999999999999999999999986543
No 2
>KOG4194|consensus
Probab=99.82 E-value=4e-21 Score=144.62 Aligned_cols=136 Identities=30% Similarity=0.480 Sum_probs=112.5
Q ss_pred ccccCccccceeccCCCcCccccc---CcccCCCCCCCEEeCCCCCCCCccchhhcCCCCCCCeEecCCCCccccCcCcC
Q psy16571 3 KEVKGLSYLKRLEITGASNLTRVR---KGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESML 79 (150)
Q Consensus 3 ~~f~~l~~L~~L~l~~n~~l~~i~---~~~~~~l~~L~~l~l~~n~~l~~~~~~~~~~l~~L~~l~l~~n~l~~lp~~~~ 79 (150)
++|.++++|++||+++| .+..+. ..+|.++++|+.|.+.+|. +..|+..+|.++..|++|+|.+|.|.++....|
T Consensus 359 ~af~~lssL~~LdLr~N-~ls~~IEDaa~~f~gl~~LrkL~l~gNq-lk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAF 436 (873)
T KOG4194|consen 359 GAFVGLSSLHKLDLRSN-ELSWCIEDAAVAFNGLPSLRKLRLTGNQ-LKSIPKRAFSGLEALEHLDLGDNAIASIQPNAF 436 (873)
T ss_pred hHHHHhhhhhhhcCcCC-eEEEEEecchhhhccchhhhheeecCce-eeecchhhhccCcccceecCCCCcceeeccccc
Confidence 46777778888888877 766543 3457778888888888884 888888888888888888888888888877666
Q ss_pred CCCCccEEEccCCCcccccChHHHHHHHhhcC---CCCeeeCCCccccCccccccccccCCCCC
Q psy16571 80 AWPELRTIDIAENPIECGCNILWLREMLVRRN---TSAVFCNSPAPLKYKSLISLSAEDLGSRV 140 (150)
Q Consensus 80 ~~~~L~~L~l~~N~~~c~c~~~~l~~~~~~~~---~~~~~C~~~~~l~~~~~~~~~~~~~~C~~ 140 (150)
.--.|.+|.+..-.|-|||++.|+.+|+.++. .....|+.|+.+.|+.+.+++..++-|..
T Consensus 437 e~m~Lk~Lv~nSssflCDCql~Wl~qWl~~~~lq~sv~a~CayPe~Lad~~i~svd~~~lvC~D 500 (873)
T KOG4194|consen 437 EPMELKELVMNSSSFLCDCQLKWLAQWLYRRKLQSSVIAKCAYPEPLADQSIVSVDTANLVCDD 500 (873)
T ss_pred ccchhhhhhhcccceEEeccHHHHHHHHHhcccccceeeeccCCcccccceeEeechhhceecC
Confidence 64488888888888999999999999999885 56689999999999999999999999974
No 3
>KOG4237|consensus
Probab=99.62 E-value=2.2e-17 Score=119.51 Aligned_cols=137 Identities=29% Similarity=0.469 Sum_probs=103.3
Q ss_pred CCccccCccccceeccCCCcCcccccCcccCCCCCCCEEeCCC-CCCCCccchhhcCCC---------------------
Q psy16571 1 MEKEVKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNK-NPKLKIIEEDALVGL--------------------- 58 (150)
Q Consensus 1 ~p~~f~~l~~L~~L~l~~n~~l~~i~~~~~~~l~~L~~l~l~~-n~~l~~~~~~~~~~l--------------------- 58 (150)
+|++|..+++|+.||+++| .|+.|.+++|.++.++..+-+-+ |+ |+.++.++|.++
T Consensus 83 P~~aF~~l~~LRrLdLS~N-~Is~I~p~AF~GL~~l~~Lvlyg~Nk-I~~l~k~~F~gL~slqrLllNan~i~Cir~~al 160 (498)
T KOG4237|consen 83 PPGAFKTLHRLRRLDLSKN-NISFIAPDAFKGLASLLSLVLYGNNK-ITDLPKGAFGGLSSLQRLLLNANHINCIRQDAL 160 (498)
T ss_pred Chhhccchhhhceeccccc-chhhcChHhhhhhHhhhHHHhhcCCc-hhhhhhhHhhhHHHHHHHhcChhhhcchhHHHH
Confidence 4667778888888888887 78888777787777776665555 64 777777666543
Q ss_pred ---CCCCeEecCCCCccccCcCcC-CCCCccEEEccCCCcccccChHHHHHHHhhcC--CCCeeeCCCccccCccccccc
Q psy16571 59 ---PNLYHLNLKENAFTSFSESML-AWPELRTIDIAENPIECGCNILWLREMLVRRN--TSAVFCNSPAPLKYKSLISLS 132 (150)
Q Consensus 59 ---~~L~~l~l~~n~l~~lp~~~~-~~~~L~~L~l~~N~~~c~c~~~~l~~~~~~~~--~~~~~C~~~~~l~~~~~~~~~ 132 (150)
+++..|.+..|.+..++...+ .+..++.+.+..|++-|||++.|+.+...... ..-.+|..|..++.+++..++
T Consensus 161 ~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~ 240 (498)
T KOG4237|consen 161 RDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVSPYRLYYKRINQED 240 (498)
T ss_pred HHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceecchHHHHHHHhcccc
Confidence 444455555666666655333 36678888999999999999999999998775 566899999999999999988
Q ss_pred cccCCCC
Q psy16571 133 AEDLGSR 139 (150)
Q Consensus 133 ~~~~~C~ 139 (150)
...+.|.
T Consensus 241 a~kf~c~ 247 (498)
T KOG4237|consen 241 ARKFLCS 247 (498)
T ss_pred hhhhhhh
Confidence 8888776
No 4
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=99.39 E-value=3.1e-13 Score=115.77 Aligned_cols=78 Identities=24% Similarity=0.492 Sum_probs=68.5
Q ss_pred ecCCCCccccCcCcCC-CCCccEEEccCCCcccccChHHHHHHHhhcC-----CCCeeeCCCccccCccccccccccCCC
Q psy16571 65 NLKENAFTSFSESMLA-WPELRTIDIAENPIECGCNILWLREMLVRRN-----TSAVFCNSPAPLKYKSLISLSAEDLGS 138 (150)
Q Consensus 65 ~l~~n~l~~lp~~~~~-~~~L~~L~l~~N~~~c~c~~~~l~~~~~~~~-----~~~~~C~~~~~l~~~~~~~~~~~~~~C 138 (150)
+|++|+|+.||...+. +.+|+.|+|.+|||+|||++.||.+|++... ...+.|..|..++|+++.++...++.|
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~CDC~L~WL~~WL~~~~v~v~~~~~i~CasP~~LrG~~L~~l~~~d~~C 80 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFECDCGLARLPRWAEEKGVKVRQPEAALCAGPGALAGQPLLGIPLLDSGC 80 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccccccccHHHHHHHHhcCccccCCcccCCCCChHHCCCCcccCCcccCCC
Confidence 5788999988887665 7899999999999999999999999998764 456889999999999999999988889
Q ss_pred CCcc
Q psy16571 139 RVRA 142 (150)
Q Consensus 139 ~~~~ 142 (150)
..+-
T Consensus 81 ~~~y 84 (2740)
T TIGR00864 81 DEEY 84 (2740)
T ss_pred CCcc
Confidence 7654
No 5
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=99.36 E-value=7e-13 Score=73.56 Aligned_cols=61 Identities=38% Similarity=0.563 Sum_probs=51.9
Q ss_pred cccceeccCCCcCcccccCcccCCCCCCCEEeCCCCCCCCccchhhcCCCCCCCeEecCCCCc
Q psy16571 9 SYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAF 71 (150)
Q Consensus 9 ~~L~~L~l~~n~~l~~i~~~~~~~l~~L~~l~l~~n~~l~~~~~~~~~~l~~L~~l~l~~n~l 71 (150)
++|++|++++| .++.+++++|.++++|+.+++++|. +..+++.+|.++++|+.+++++|+|
T Consensus 1 p~L~~L~l~~n-~l~~i~~~~f~~l~~L~~L~l~~N~-l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNN-KLTEIPPDSFSNLPNLETLDLSNNN-LTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSS-TESEECTTTTTTGTTESEEEETSSS-ESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCC-CCCccCHHHHcCCCCCCEeEccCCc-cCccCHHHHcCCCCCCEEeCcCCcC
Confidence 46788888888 8888888888888888888888886 8888888888888888888888865
No 6
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=99.20 E-value=2.1e-11 Score=67.54 Aligned_cols=60 Identities=38% Similarity=0.600 Sum_probs=54.8
Q ss_pred CCCCEEeCCCCCCCCccchhhcCCCCCCCeEecCCCCccccCcCcC-CCCCccEEEccCCCc
Q psy16571 34 LNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESML-AWPELRTIDIAENPI 94 (150)
Q Consensus 34 ~~L~~l~l~~n~~l~~~~~~~~~~l~~L~~l~l~~n~l~~lp~~~~-~~~~L~~L~l~~N~~ 94 (150)
++|+.+++++|. ++.+++..|.++++|+.|++++|.++.++...+ .+++|+.|++++|++
T Consensus 1 p~L~~L~l~~n~-l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNK-LTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSST-ESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCC-CCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 578999999996 999999999999999999999999999988654 599999999999975
No 7
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.16 E-value=5.6e-11 Score=79.13 Aligned_cols=90 Identities=28% Similarity=0.431 Sum_probs=44.0
Q ss_pred CccccceeccCCCcCcccccCcccCCCCCCCEEeCCCCCCCCccchhhcCCCCCCCeEecCCCCccccCc--CcCCCCCc
Q psy16571 7 GLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSE--SMLAWPEL 84 (150)
Q Consensus 7 ~l~~L~~L~l~~n~~l~~i~~~~~~~l~~L~~l~l~~n~~l~~~~~~~~~~l~~L~~l~l~~n~l~~lp~--~~~~~~~L 84 (150)
.+.+|+.|++++| .++.++. +..++.|+.|++++|. |+.+.......+++|+.|++++|+|..+.. .+..+++|
T Consensus 40 ~l~~L~~L~Ls~N-~I~~l~~--l~~L~~L~~L~L~~N~-I~~i~~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L 115 (175)
T PF14580_consen 40 TLDKLEVLDLSNN-QITKLEG--LPGLPRLKTLDLSNNR-ISSISEGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKL 115 (175)
T ss_dssp T-TT--EEE-TTS---S--TT------TT--EEE--SS----S-CHHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT-
T ss_pred hhcCCCEEECCCC-CCccccC--ccChhhhhhcccCCCC-CCccccchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCc
Confidence 3567899999999 9999874 7889999999999996 998865433457899999999999987754 24458999
Q ss_pred cEEEccCCCcccccCh
Q psy16571 85 RTIDIAENPIECGCNI 100 (150)
Q Consensus 85 ~~L~l~~N~~~c~c~~ 100 (150)
+.|++.+||+.-....
T Consensus 116 ~~L~L~~NPv~~~~~Y 131 (175)
T PF14580_consen 116 RVLSLEGNPVCEKKNY 131 (175)
T ss_dssp -EEE-TT-GGGGSTTH
T ss_pred ceeeccCCcccchhhH
Confidence 9999999998655444
No 8
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.08 E-value=1.8e-10 Score=94.70 Aligned_cols=96 Identities=19% Similarity=0.272 Sum_probs=81.6
Q ss_pred CccccCccccceeccCCCcCcccccCcccCCCCCCCEEeCCCCCCCCccchhhcCCCCCCCeEecCCCCcc-ccCcCcCC
Q psy16571 2 EKEVKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFT-SFSESMLA 80 (150)
Q Consensus 2 p~~f~~l~~L~~L~l~~n~~l~~i~~~~~~~l~~L~~l~l~~n~~l~~~~~~~~~~l~~L~~l~l~~n~l~-~lp~~~~~ 80 (150)
|..|.++++|+.|++++| .+....+..+..+++|+.|++++|. ++...+..|..+++|+.|+|++|.+. .+|..+..
T Consensus 492 ~~~~~~l~~L~~L~Ls~N-~l~~~~p~~~~~l~~L~~L~Ls~N~-l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~ 569 (968)
T PLN00113 492 PRKLGSLSELMQLKLSEN-KLSGEIPDELSSCKKLVSLDLSHNQ-LSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGN 569 (968)
T ss_pred ChhhhhhhccCEEECcCC-cceeeCChHHcCccCCCEEECCCCc-ccccCChhHhCcccCCEEECCCCcccccCChhHhc
Confidence 456778888999999998 8887777788889999999999996 88877778888999999999999988 67888888
Q ss_pred CCCccEEEccCCCcccccC
Q psy16571 81 WPELRTIDIAENPIECGCN 99 (150)
Q Consensus 81 ~~~L~~L~l~~N~~~c~c~ 99 (150)
+.+|+.+++++|++.+...
T Consensus 570 l~~L~~l~ls~N~l~~~~p 588 (968)
T PLN00113 570 VESLVQVNISHNHLHGSLP 588 (968)
T ss_pred CcccCEEeccCCcceeeCC
Confidence 8899999999999887544
No 9
>KOG4194|consensus
Probab=99.06 E-value=2.6e-11 Score=92.50 Aligned_cols=74 Identities=26% Similarity=0.313 Sum_probs=44.3
Q ss_pred ccccCccccceeccCCCcCcccccCcccCCCCCCCEEeCCCCCCCCccchhhcCCCCCCCeEecCCCCccccCcCc
Q psy16571 3 KEVKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESM 78 (150)
Q Consensus 3 ~~f~~l~~L~~L~l~~n~~l~~i~~~~~~~l~~L~~l~l~~n~~l~~~~~~~~~~l~~L~~l~l~~n~l~~lp~~~ 78 (150)
++|-++.++++|+++.| ++..+..+.+.++++|+.|++++|. |..+..+.+...++|+.|+|++|+|+.++++-
T Consensus 263 G~Fy~l~kme~l~L~~N-~l~~vn~g~lfgLt~L~~L~lS~Na-I~rih~d~WsftqkL~~LdLs~N~i~~l~~~s 336 (873)
T KOG4194|consen 263 GAFYGLEKMEHLNLETN-RLQAVNEGWLFGLTSLEQLDLSYNA-IQRIHIDSWSFTQKLKELDLSSNRITRLDEGS 336 (873)
T ss_pred cceeeecccceeecccc-hhhhhhcccccccchhhhhccchhh-hheeecchhhhcccceeEeccccccccCChhH
Confidence 45555566666666665 6666555555566666666666663 66666655555566666666666666665543
No 10
>PLN03150 hypothetical protein; Provisional
Probab=99.03 E-value=5.4e-10 Score=87.99 Aligned_cols=84 Identities=20% Similarity=0.290 Sum_probs=45.3
Q ss_pred cceeccCCCcCcccccCcccCCCCCCCEEeCCCCCCCCccchhhcCCCCCCCeEecCCCCcc-ccCcCcCCCCCccEEEc
Q psy16571 11 LKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFT-SFSESMLAWPELRTIDI 89 (150)
Q Consensus 11 L~~L~l~~n~~l~~i~~~~~~~l~~L~~l~l~~n~~l~~~~~~~~~~l~~L~~l~l~~n~l~-~lp~~~~~~~~L~~L~l 89 (150)
+..|++++| .+.+..+..+..+++|+.|++++|. +.+..+..+..+++|+.|+|++|.+. .+|..+..+++|+.|+|
T Consensus 420 v~~L~L~~n-~L~g~ip~~i~~L~~L~~L~Ls~N~-l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~L 497 (623)
T PLN03150 420 IDGLGLDNQ-GLRGFIPNDISKLRHLQSINLSGNS-IRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNL 497 (623)
T ss_pred EEEEECCCC-CccccCCHHHhCCCCCCEEECCCCc-ccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEEC
Confidence 445555555 5554444445555555555555553 54433334455555555555555555 44555555555555555
Q ss_pred cCCCccc
Q psy16571 90 AENPIEC 96 (150)
Q Consensus 90 ~~N~~~c 96 (150)
++|.+.+
T Consensus 498 s~N~l~g 504 (623)
T PLN03150 498 NGNSLSG 504 (623)
T ss_pred cCCcccc
Confidence 5555544
No 11
>smart00082 LRRCT Leucine rich repeat C-terminal domain.
Probab=98.97 E-value=4.1e-10 Score=60.05 Aligned_cols=47 Identities=28% Similarity=0.647 Sum_probs=40.6
Q ss_pred CCcccccChHHHHHHHhhcC----CCCeeeCCCccccCccccccccccCCCC
Q psy16571 92 NPIECGCNILWLREMLVRRN----TSAVFCNSPAPLKYKSLISLSAEDLGSR 139 (150)
Q Consensus 92 N~~~c~c~~~~l~~~~~~~~----~~~~~C~~~~~l~~~~~~~~~~~~~~C~ 139 (150)
|||.|||++.||+.|+.... ...+.|.+|..++ .++.++..+++.|.
T Consensus 1 NP~~CdC~l~~~~~w~~~~~~~~~~~~~~C~~P~~~~-~~l~~~~~~~~~C~ 51 (51)
T smart00082 1 NPFICDCELRWLLRWLQANEHLQDPVSLRCASPSSLR-GPLLELLHSEFKCP 51 (51)
T ss_pred CCccCcCCchHHHHHHHhCCccCCCCCCEeCCcHHHH-hHHHcCCHhhCCCc
Confidence 89999999999999998732 4579999999999 67899888888884
No 12
>KOG0472|consensus
Probab=98.96 E-value=1.1e-10 Score=85.66 Aligned_cols=89 Identities=21% Similarity=0.357 Sum_probs=62.7
Q ss_pred cccCccccceeccCCCcCcccccCcccCCCCCCCEEeCCCCCCCCccchhhcCCCCCCCeEecCCCCccccCcCcCCCCC
Q psy16571 4 EVKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESMLAWPE 83 (150)
Q Consensus 4 ~f~~l~~L~~L~l~~n~~l~~i~~~~~~~l~~L~~l~l~~n~~l~~~~~~~~~~l~~L~~l~l~~n~l~~lp~~~~~~~~ 83 (150)
.+..+..|+.|+++.| ++..+|. ....+..++.+-.++| ++..+++..+.++.+|.+|+|.+|.+..+|+.+.++.+
T Consensus 453 e~~~lv~Lq~LnlS~N-rFr~lP~-~~y~lq~lEtllas~n-qi~~vd~~~l~nm~nL~tLDL~nNdlq~IPp~Lgnmtn 529 (565)
T KOG0472|consen 453 EMGSLVRLQTLNLSFN-RFRMLPE-CLYELQTLETLLASNN-QIGSVDPSGLKNMRNLTTLDLQNNDLQQIPPILGNMTN 529 (565)
T ss_pred hhhhhhhhheeccccc-ccccchH-HHhhHHHHHHHHhccc-cccccChHHhhhhhhcceeccCCCchhhCChhhccccc
Confidence 3344444444444444 4444433 2222333334444444 57888887778899999999999999999999999999
Q ss_pred ccEEEccCCCcc
Q psy16571 84 LRTIDIAENPIE 95 (150)
Q Consensus 84 L~~L~l~~N~~~ 95 (150)
+++|.+.||||.
T Consensus 530 L~hLeL~gNpfr 541 (565)
T KOG0472|consen 530 LRHLELDGNPFR 541 (565)
T ss_pred eeEEEecCCccC
Confidence 999999999997
No 13
>KOG0617|consensus
Probab=98.95 E-value=3e-11 Score=79.55 Aligned_cols=83 Identities=28% Similarity=0.448 Sum_probs=51.1
Q ss_pred cccceeccCCCcCcccccCcccCCCCCCCEEeCCCCCCCCccchhhcCCCCCCCeEecCCCCccccCcCcCCCCCccEEE
Q psy16571 9 SYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESMLAWPELRTID 88 (150)
Q Consensus 9 ~~L~~L~l~~n~~l~~i~~~~~~~l~~L~~l~l~~n~~l~~~~~~~~~~l~~L~~l~l~~n~l~~lp~~~~~~~~L~~L~ 88 (150)
..+..|.+++| .++.+++. +..+.+|+.+++.+| +++.++.. .+.++.|+.|+++-|++..+|.++..++.|+.|+
T Consensus 33 s~ITrLtLSHN-Kl~~vppn-ia~l~nlevln~~nn-qie~lp~~-issl~klr~lnvgmnrl~~lprgfgs~p~levld 108 (264)
T KOG0617|consen 33 SNITRLTLSHN-KLTVVPPN-IAELKNLEVLNLSNN-QIEELPTS-ISSLPKLRILNVGMNRLNILPRGFGSFPALEVLD 108 (264)
T ss_pred hhhhhhhcccC-ceeecCCc-HHHhhhhhhhhcccc-hhhhcChh-hhhchhhhheecchhhhhcCccccCCCchhhhhh
Confidence 44455666666 66666664 345666666666666 36666654 3556666666666666666666666666666666
Q ss_pred ccCCCcc
Q psy16571 89 IAENPIE 95 (150)
Q Consensus 89 l~~N~~~ 95 (150)
+.-|.+.
T Consensus 109 ltynnl~ 115 (264)
T KOG0617|consen 109 LTYNNLN 115 (264)
T ss_pred ccccccc
Confidence 6555543
No 14
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=98.90 E-value=2.2e-09 Score=88.29 Aligned_cols=88 Identities=23% Similarity=0.238 Sum_probs=41.5
Q ss_pred cccCccccceeccCCCcCcccccCcccCCCCCCCEEeCCCCCCCCccchhhcCCCCCCCeEecCCCCcc-ccCcCcCCCC
Q psy16571 4 EVKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFT-SFSESMLAWP 82 (150)
Q Consensus 4 ~f~~l~~L~~L~l~~n~~l~~i~~~~~~~l~~L~~l~l~~n~~l~~~~~~~~~~l~~L~~l~l~~n~l~-~lp~~~~~~~ 82 (150)
.|.++.+|++|++++| .+....+..+..+++|+.|++++|. +....+..+..+++|+.|++++|.+. .+|..+..++
T Consensus 159 ~~~~l~~L~~L~L~~n-~l~~~~p~~~~~l~~L~~L~L~~n~-l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~ 236 (968)
T PLN00113 159 DIGSFSSLKVLDLGGN-VLVGKIPNSLTNLTSLEFLTLASNQ-LVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLT 236 (968)
T ss_pred HHhcCCCCCEEECccC-cccccCChhhhhCcCCCeeeccCCC-CcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCC
Confidence 3445555555555555 4443333344555555555555553 44333333444444555555544444 3343344444
Q ss_pred CccEEEccCCC
Q psy16571 83 ELRTIDIAENP 93 (150)
Q Consensus 83 ~L~~L~l~~N~ 93 (150)
+|+.|++++|.
T Consensus 237 ~L~~L~L~~n~ 247 (968)
T PLN00113 237 SLNHLDLVYNN 247 (968)
T ss_pred CCCEEECcCce
Confidence 44444444443
No 15
>PLN03150 hypothetical protein; Provisional
Probab=98.83 E-value=7.5e-09 Score=81.62 Aligned_cols=95 Identities=19% Similarity=0.286 Sum_probs=80.4
Q ss_pred CccccCccccceeccCCCcCcccccCcccCCCCCCCEEeCCCCCCCCccchhhcCCCCCCCeEecCCCCcc-ccCcCcCC
Q psy16571 2 EKEVKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFT-SFSESMLA 80 (150)
Q Consensus 2 p~~f~~l~~L~~L~l~~n~~l~~i~~~~~~~l~~L~~l~l~~n~~l~~~~~~~~~~l~~L~~l~l~~n~l~-~lp~~~~~ 80 (150)
|..+..+++|+.|++++| .+.+..+..+..+++|+.|++++|. +....+..+..+++|+.|+|++|.+. .+|..+..
T Consensus 435 p~~i~~L~~L~~L~Ls~N-~l~g~iP~~~~~l~~L~~LdLs~N~-lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~ 512 (623)
T PLN03150 435 PNDISKLRHLQSINLSGN-SIRGNIPPSLGSITSLEVLDLSYNS-FNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGG 512 (623)
T ss_pred CHHHhCCCCCCEEECCCC-cccCcCChHHhCCCCCCEEECCCCC-CCCCCchHHhcCCCCCEEECcCCcccccCChHHhh
Confidence 456778999999999999 8886666678999999999999996 98777777899999999999999998 78876655
Q ss_pred -CCCccEEEccCCCccccc
Q psy16571 81 -WPELRTIDIAENPIECGC 98 (150)
Q Consensus 81 -~~~L~~L~l~~N~~~c~c 98 (150)
..++..+++.+|+..|.+
T Consensus 513 ~~~~~~~l~~~~N~~lc~~ 531 (623)
T PLN03150 513 RLLHRASFNFTDNAGLCGI 531 (623)
T ss_pred ccccCceEEecCCccccCC
Confidence 346678999999988853
No 16
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.82 E-value=1.7e-09 Score=72.03 Aligned_cols=93 Identities=27% Similarity=0.403 Sum_probs=34.3
Q ss_pred cCccccceeccCCCcCcccccCcccC-CCCCCCEEeCCCCCCCCccchhhcCCCCCCCeEecCCCCccccCcCcC-CCCC
Q psy16571 6 KGLSYLKRLEITGASNLTRVRKGAFA-DNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESML-AWPE 83 (150)
Q Consensus 6 ~~l~~L~~L~l~~n~~l~~i~~~~~~-~l~~L~~l~l~~n~~l~~~~~~~~~~l~~L~~l~l~~n~l~~lp~~~~-~~~~ 83 (150)
.+...+++|++++| .++.+.. +. .+.+|+.|++++|. |+.+.. +..++.|+.|++++|.|+++...+. .+++
T Consensus 16 ~n~~~~~~L~L~~n-~I~~Ie~--L~~~l~~L~~L~Ls~N~-I~~l~~--l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~ 89 (175)
T PF14580_consen 16 NNPVKLRELNLRGN-QISTIEN--LGATLDKLEVLDLSNNQ-ITKLEG--LPGLPRLKTLDLSNNRISSISEGLDKNLPN 89 (175)
T ss_dssp ---------------------S----TT-TT--EEE-TTS---S--TT------TT--EEE--SS---S-CHHHHHH-TT
T ss_pred cccccccccccccc-ccccccc--hhhhhcCCCEEECCCCC-CccccC--ccChhhhhhcccCCCCCCccccchHHhCCc
Confidence 34556899999999 9999874 44 57899999999996 998864 6789999999999999999876543 4889
Q ss_pred ccEEEccCCCcccccChHHHH
Q psy16571 84 LRTIDIAENPIECGCNILWLR 104 (150)
Q Consensus 84 L~~L~l~~N~~~c~c~~~~l~ 104 (150)
|+.|++++|.+.---++..+.
T Consensus 90 L~~L~L~~N~I~~l~~l~~L~ 110 (175)
T PF14580_consen 90 LQELYLSNNKISDLNELEPLS 110 (175)
T ss_dssp --EEE-TTS---SCCCCGGGG
T ss_pred CCEEECcCCcCCChHHhHHHH
Confidence 999999999997655555444
No 17
>KOG0617|consensus
Probab=98.76 E-value=2.8e-10 Score=75.04 Aligned_cols=89 Identities=20% Similarity=0.268 Sum_probs=44.3
Q ss_pred CccccCccccceeccCCCcCcccccCcccCCCCCCCEEeCCCCCCCCc-cchhhcCCCCCCCeEecCCCCccccCcCcCC
Q psy16571 2 EKEVKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKI-IEEDALVGLPNLYHLNLKENAFTSFSESMLA 80 (150)
Q Consensus 2 p~~f~~l~~L~~L~l~~n~~l~~i~~~~~~~l~~L~~l~l~~n~~l~~-~~~~~~~~l~~L~~l~l~~n~l~~lp~~~~~ 80 (150)
|.+++.|++|+.|++.-| .+..+|. .|+.++.|+.+++.+|. +.. .-|+.|-.+..|+.|+|+.|.+.-+|..+.+
T Consensus 72 p~~issl~klr~lnvgmn-rl~~lpr-gfgs~p~levldltynn-l~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~ 148 (264)
T KOG0617|consen 72 PTSISSLPKLRILNVGMN-RLNILPR-GFGSFPALEVLDLTYNN-LNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGK 148 (264)
T ss_pred Chhhhhchhhhheecchh-hhhcCcc-ccCCCchhhhhhccccc-cccccCCcchhHHHHHHHHHhcCCCcccCChhhhh
Confidence 445556666666666665 6555554 35666666666666664 432 2222233334444444444444444444444
Q ss_pred CCCccEEEccCCC
Q psy16571 81 WPELRTIDIAENP 93 (150)
Q Consensus 81 ~~~L~~L~l~~N~ 93 (150)
+.+|+.|.+.+|.
T Consensus 149 lt~lqil~lrdnd 161 (264)
T KOG0617|consen 149 LTNLQILSLRDND 161 (264)
T ss_pred hcceeEEeeccCc
Confidence 4444444444443
No 18
>KOG0472|consensus
Probab=98.75 E-value=6.2e-10 Score=81.77 Aligned_cols=102 Identities=23% Similarity=0.274 Sum_probs=73.5
Q ss_pred cccCccccceeccCCCcCcccccCcccCCCCCCCEEeCCCCCCCCccchhhcCCCCCCCeEecCCCCccccCcCcCCCCC
Q psy16571 4 EVKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESMLAWPE 83 (150)
Q Consensus 4 ~f~~l~~L~~L~l~~n~~l~~i~~~~~~~l~~L~~l~l~~n~~l~~~~~~~~~~l~~L~~l~l~~n~l~~lp~~~~~~~~ 83 (150)
+|.+...|.+++...| .++-++......+.++..+|+..|+ ++.+|... --+.+|..||+++|.++.+|..+.++ .
T Consensus 223 ef~gcs~L~Elh~g~N-~i~~lpae~~~~L~~l~vLDLRdNk-lke~Pde~-clLrsL~rLDlSNN~is~Lp~sLgnl-h 298 (565)
T KOG0472|consen 223 EFPGCSLLKELHVGEN-QIEMLPAEHLKHLNSLLVLDLRDNK-LKEVPDEI-CLLRSLERLDLSNNDISSLPYSLGNL-H 298 (565)
T ss_pred CCCccHHHHHHHhccc-HHHhhHHHHhcccccceeeeccccc-cccCchHH-HHhhhhhhhcccCCccccCCcccccc-e
Confidence 5666666666666666 6777776666677788888888885 87777654 34677888888888888888888887 8
Q ss_pred ccEEEccCCCccc------ccChHHHHHHHhh
Q psy16571 84 LRTIDIAENPIEC------GCNILWLREMLVR 109 (150)
Q Consensus 84 L~~L~l~~N~~~c------~c~~~~l~~~~~~ 109 (150)
|+.|.+.|||+.- .|...-+..+++.
T Consensus 299 L~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs 330 (565)
T KOG0472|consen 299 LKFLALEGNPLRTIRREIISKGTQEVLKYLRS 330 (565)
T ss_pred eeehhhcCCchHHHHHHHHcccHHHHHHHHHH
Confidence 8888889998742 2555555555554
No 19
>KOG0444|consensus
Probab=98.73 E-value=1.5e-09 Score=84.05 Aligned_cols=92 Identities=21% Similarity=0.341 Sum_probs=73.4
Q ss_pred CccccCccccceeccCCCcCcccccCcccCCCCCCCEEeCCCCCCCCccchhhcCCCCCCCeEecCCCCccccCcCcCCC
Q psy16571 2 EKEVKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESMLAW 81 (150)
Q Consensus 2 p~~f~~l~~L~~L~l~~n~~l~~i~~~~~~~l~~L~~l~l~~n~~l~~~~~~~~~~l~~L~~l~l~~n~l~~lp~~~~~~ 81 (150)
|..+-.|.-|..||+++| .+..+|. .+....++-.|++++|. |..||...|.++..|-.|+|++|++..+|+.+-.+
T Consensus 96 P~diF~l~dLt~lDLShN-qL~EvP~-~LE~AKn~iVLNLS~N~-IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL 172 (1255)
T KOG0444|consen 96 PTDIFRLKDLTILDLSHN-QLREVPT-NLEYAKNSIVLNLSYNN-IETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRL 172 (1255)
T ss_pred Cchhcccccceeeecchh-hhhhcch-hhhhhcCcEEEEcccCc-cccCCchHHHhhHhHhhhccccchhhhcCHHHHHH
Confidence 445556677788888888 8888775 35666778888888885 88888888888888888888888888888888888
Q ss_pred CCccEEEccCCCccc
Q psy16571 82 PELRTIDIAENPIEC 96 (150)
Q Consensus 82 ~~L~~L~l~~N~~~c 96 (150)
..|+.|.|++||+.=
T Consensus 173 ~~LqtL~Ls~NPL~h 187 (1255)
T KOG0444|consen 173 SMLQTLKLSNNPLNH 187 (1255)
T ss_pred hhhhhhhcCCChhhH
Confidence 889999999998753
No 20
>KOG0618|consensus
Probab=98.63 E-value=2.9e-09 Score=84.81 Aligned_cols=87 Identities=26% Similarity=0.382 Sum_probs=62.8
Q ss_pred ccCccccceeccCCCcCcccccCcccCCCCCCCEEeCCCCCCCCccchhh---------------------cCCCCCCCe
Q psy16571 5 VKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDA---------------------LVGLPNLYH 63 (150)
Q Consensus 5 f~~l~~L~~L~l~~n~~l~~i~~~~~~~l~~L~~l~l~~n~~l~~~~~~~---------------------~~~l~~L~~ 63 (150)
+.+...|+.|++++| .+..+|...+.++..|+.|++++|+ ++.++... +..++.|+.
T Consensus 379 l~~~~hLKVLhLsyN-rL~~fpas~~~kle~LeeL~LSGNk-L~~Lp~tva~~~~L~tL~ahsN~l~~fPe~~~l~qL~~ 456 (1081)
T KOG0618|consen 379 LVNFKHLKVLHLSYN-RLNSFPASKLRKLEELEELNLSGNK-LTTLPDTVANLGRLHTLRAHSNQLLSFPELAQLPQLKV 456 (1081)
T ss_pred hccccceeeeeeccc-ccccCCHHHHhchHHhHHHhcccch-hhhhhHHHHhhhhhHHHhhcCCceeechhhhhcCcceE
Confidence 456678888888888 8888888888888888888888886 77666421 234567777
Q ss_pred EecCCCCccc--cCcCcCCCCCccEEEccCCCc
Q psy16571 64 LNLKENAFTS--FSESMLAWPELRTIDIAENPI 94 (150)
Q Consensus 64 l~l~~n~l~~--lp~~~~~~~~L~~L~l~~N~~ 94 (150)
+|++.|.++. +|. ....++|++|+++||.+
T Consensus 457 lDlS~N~L~~~~l~~-~~p~p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 457 LDLSCNNLSEVTLPE-ALPSPNLKYLDLSGNTR 488 (1081)
T ss_pred Eecccchhhhhhhhh-hCCCcccceeeccCCcc
Confidence 7777777763 332 22347888888888885
No 21
>KOG0444|consensus
Probab=98.62 E-value=2.1e-09 Score=83.19 Aligned_cols=91 Identities=21% Similarity=0.281 Sum_probs=67.9
Q ss_pred CccccCccccceeccCCCcCcccccCcccCCCCCCCEEeCCCCCCCCccchhhcCCCCCCCeEecCCCCccccCcCcCCC
Q psy16571 2 EKEVKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESMLAW 81 (150)
Q Consensus 2 p~~f~~l~~L~~L~l~~n~~l~~i~~~~~~~l~~L~~l~l~~n~~l~~~~~~~~~~l~~L~~l~l~~n~l~~lp~~~~~~ 81 (150)
|.++.+|.+|..+|++.| ++..+|. .+..+++|+.|++++|. |+.+... .....+|++|+++.|.++.+|..+..+
T Consensus 215 Ptsld~l~NL~dvDlS~N-~Lp~vPe-cly~l~~LrrLNLS~N~-iteL~~~-~~~W~~lEtLNlSrNQLt~LP~avcKL 290 (1255)
T KOG0444|consen 215 PTSLDDLHNLRDVDLSEN-NLPIVPE-CLYKLRNLRRLNLSGNK-ITELNMT-EGEWENLETLNLSRNQLTVLPDAVCKL 290 (1255)
T ss_pred CCchhhhhhhhhcccccc-CCCcchH-HHhhhhhhheeccCcCc-eeeeecc-HHHHhhhhhhccccchhccchHHHhhh
Confidence 667788888888888888 8888876 45668888888888885 8776543 244567777888888887777777777
Q ss_pred CCccEEEccCCCccc
Q psy16571 82 PELRTIDIAENPIEC 96 (150)
Q Consensus 82 ~~L~~L~l~~N~~~c 96 (150)
+.|+.|++.+|++.=
T Consensus 291 ~kL~kLy~n~NkL~F 305 (1255)
T KOG0444|consen 291 TKLTKLYANNNKLTF 305 (1255)
T ss_pred HHHHHHHhccCcccc
Confidence 777777777666543
No 22
>KOG0618|consensus
Probab=98.53 E-value=3.8e-09 Score=84.20 Aligned_cols=92 Identities=22% Similarity=0.234 Sum_probs=80.4
Q ss_pred ccccceeccCCCcCcccccCcccCCCCCCCEEeCCCCCCCCccchhhcCCCCCCCeEecCCCCccccCcCcCCCCCccEE
Q psy16571 8 LSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESMLAWPELRTI 87 (150)
Q Consensus 8 l~~L~~L~l~~n~~l~~i~~~~~~~l~~L~~l~l~~n~~l~~~~~~~~~~l~~L~~l~l~~n~l~~lp~~~~~~~~L~~L 87 (150)
++.|+.|++.+| .++.-.-..+.++.+|+.|++++|+ +..++...+..+..|+.|+|++|+++.+|..+..+..|+.|
T Consensus 358 ~~~Lq~LylanN-~Ltd~c~p~l~~~~hLKVLhLsyNr-L~~fpas~~~kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL 435 (1081)
T KOG0618|consen 358 HAALQELYLANN-HLTDSCFPVLVNFKHLKVLHLSYNR-LNSFPASKLRKLEELEELNLSGNKLTTLPDTVANLGRLHTL 435 (1081)
T ss_pred hHHHHHHHHhcC-cccccchhhhccccceeeeeecccc-cccCCHHHHhchHHhHHHhcccchhhhhhHHHHhhhhhHHH
Confidence 457888999999 8876555578899999999999996 99999999999999999999999999999988888888888
Q ss_pred EccCCCcccccChH
Q psy16571 88 DIAENPIECGCNIL 101 (150)
Q Consensus 88 ~l~~N~~~c~c~~~ 101 (150)
...+|.+.|..++.
T Consensus 436 ~ahsN~l~~fPe~~ 449 (1081)
T KOG0618|consen 436 RAHSNQLLSFPELA 449 (1081)
T ss_pred hhcCCceeechhhh
Confidence 88888888876543
No 23
>KOG1644|consensus
Probab=98.46 E-value=3.2e-07 Score=61.91 Aligned_cols=82 Identities=27% Similarity=0.453 Sum_probs=69.2
Q ss_pred ccceeccCCCcCcccccCcccCCCCCCCEEeCCCCCCCCccchhhcCCCCCCCeEecCCCCccccCc--CcCCCCCccEE
Q psy16571 10 YLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSE--SMLAWPELRTI 87 (150)
Q Consensus 10 ~L~~L~l~~n~~l~~i~~~~~~~l~~L~~l~l~~n~~l~~~~~~~~~~l~~L~~l~l~~n~l~~lp~--~~~~~~~L~~L 87 (150)
+...+|+++| .+..++. |..++.|.+|.+.+|+ |+.|.+..-..+++|..|.|.+|.|..+.. .+..++.|+.|
T Consensus 43 ~~d~iDLtdN-dl~~l~~--lp~l~rL~tLll~nNr-It~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~L 118 (233)
T KOG1644|consen 43 QFDAIDLTDN-DLRKLDN--LPHLPRLHTLLLNNNR-ITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYL 118 (233)
T ss_pred ccceeccccc-chhhccc--CCCccccceEEecCCc-ceeeccchhhhccccceEEecCcchhhhhhcchhccCCcccee
Confidence 4567899999 8888874 8899999999999997 999998766678899999999999988754 24458899999
Q ss_pred EccCCCcc
Q psy16571 88 DIAENPIE 95 (150)
Q Consensus 88 ~l~~N~~~ 95 (150)
.+-+||..
T Consensus 119 tll~Npv~ 126 (233)
T KOG1644|consen 119 TLLGNPVE 126 (233)
T ss_pred eecCCchh
Confidence 99999873
No 24
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.35 E-value=4.7e-07 Score=72.74 Aligned_cols=77 Identities=25% Similarity=0.317 Sum_probs=54.9
Q ss_pred ccceeccCCCcCcccccCcccCCCCCCCEEeCCCCCCCCccchhhcCCCCCCCeEecCCCCccccCcCcCCCCCccEEEc
Q psy16571 10 YLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESMLAWPELRTIDI 89 (150)
Q Consensus 10 ~L~~L~l~~n~~l~~i~~~~~~~l~~L~~l~l~~n~~l~~~~~~~~~~l~~L~~l~l~~n~l~~lp~~~~~~~~L~~L~l 89 (150)
+|+.|++++| .++.++.. ..+|+.|++++|. ++.++.. ..+|+.|++++|.|+.+|..+..++++..|++
T Consensus 383 ~L~~LdLs~N-~Lt~LP~l----~s~L~~LdLS~N~-LssIP~l----~~~L~~L~Ls~NqLt~LP~sl~~L~~L~~LdL 452 (788)
T PRK15387 383 GLKELIVSGN-RLTSLPVL----PSELKELMVSGNR-LTSLPML----PSGLLSLSVYRNQLTRLPESLIHLSSETTVNL 452 (788)
T ss_pred ccceEEecCC-cccCCCCc----ccCCCEEEccCCc-CCCCCcc----hhhhhhhhhccCcccccChHHhhccCCCeEEC
Confidence 4555666665 55555431 2456777777774 7666532 24577788888888888888888999999999
Q ss_pred cCCCccc
Q psy16571 90 AENPIEC 96 (150)
Q Consensus 90 ~~N~~~c 96 (150)
++|+++.
T Consensus 453 s~N~Ls~ 459 (788)
T PRK15387 453 EGNPLSE 459 (788)
T ss_pred CCCCCCc
Confidence 9999985
No 25
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.35 E-value=8.4e-07 Score=45.61 Aligned_cols=38 Identities=39% Similarity=0.581 Sum_probs=17.4
Q ss_pred CCCEEeCCCCCCCCccchhhcCCCCCCCeEecCCCCcccc
Q psy16571 35 NLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSF 74 (150)
Q Consensus 35 ~L~~l~l~~n~~l~~~~~~~~~~l~~L~~l~l~~n~l~~l 74 (150)
+|+.|++++|. ++.+++ .+..+++|+.|++++|+++.+
T Consensus 2 ~L~~L~l~~N~-i~~l~~-~l~~l~~L~~L~l~~N~i~~i 39 (44)
T PF12799_consen 2 NLEELDLSNNQ-ITDLPP-ELSNLPNLETLNLSNNPISDI 39 (44)
T ss_dssp T-SEEEETSSS--SSHGG-HGTTCTTSSEEEETSSCCSBE
T ss_pred cceEEEccCCC-CcccCc-hHhCCCCCCEEEecCCCCCCC
Confidence 34455555553 554443 234455555555555555444
No 26
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.31 E-value=6.7e-07 Score=45.97 Aligned_cols=37 Identities=32% Similarity=0.598 Sum_probs=32.6
Q ss_pred CCCCeEecCCCCccccCcCcCCCCCccEEEccCCCcc
Q psy16571 59 PNLYHLNLKENAFTSFSESMLAWPELRTIDIAENPIE 95 (150)
Q Consensus 59 ~~L~~l~l~~n~l~~lp~~~~~~~~L~~L~l~~N~~~ 95 (150)
++|+.|++++|+|+.+|..+..+++|+.|++++|++.
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCS
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCCCCC
Confidence 4789999999999999988899999999999999986
No 27
>KOG1259|consensus
Probab=98.29 E-value=2.2e-07 Score=66.49 Aligned_cols=82 Identities=26% Similarity=0.423 Sum_probs=61.9
Q ss_pred ccceeccCCCcCcccccCcccCCCCCCCEEeCCCCCCCCccchhhcCCCCCCCeEecCCCCccccCcCcCCCCCccEEEc
Q psy16571 10 YLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESMLAWPELRTIDI 89 (150)
Q Consensus 10 ~L~~L~l~~n~~l~~i~~~~~~~l~~L~~l~l~~n~~l~~~~~~~~~~l~~L~~l~l~~n~l~~lp~~~~~~~~L~~L~l 89 (150)
.|.++|+++| .++.++. +..-+|.++.|++++|. +..+.. +..+++|+.|+|++|.++.+..+-..+.++..|.+
T Consensus 285 ~LtelDLS~N-~I~~iDE-SvKL~Pkir~L~lS~N~-i~~v~n--La~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~L 359 (490)
T KOG1259|consen 285 ELTELDLSGN-LITQIDE-SVKLAPKLRRLILSQNR-IRTVQN--LAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKL 359 (490)
T ss_pred hhhhcccccc-chhhhhh-hhhhccceeEEeccccc-eeeehh--hhhcccceEeecccchhHhhhhhHhhhcCEeeeeh
Confidence 4677899998 8888875 45668889999999986 877765 56788889999999988877654444666677777
Q ss_pred cCCCccc
Q psy16571 90 AENPIEC 96 (150)
Q Consensus 90 ~~N~~~c 96 (150)
++|.+.-
T Consensus 360 a~N~iE~ 366 (490)
T KOG1259|consen 360 AQNKIET 366 (490)
T ss_pred hhhhHhh
Confidence 7776654
No 28
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.26 E-value=2.8e-06 Score=71.54 Aligned_cols=84 Identities=23% Similarity=0.329 Sum_probs=51.0
Q ss_pred CccccCccccceeccCCCcCcccccCcccCCCCCCCEEeCCCCCCCCccchhhcCCCCCCCeEecCCCCccccCcCcCCC
Q psy16571 2 EKEVKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESMLAW 81 (150)
Q Consensus 2 p~~f~~l~~L~~L~l~~n~~l~~i~~~~~~~l~~L~~l~l~~n~~l~~~~~~~~~~l~~L~~l~l~~n~l~~lp~~~~~~ 81 (150)
|.+|.++++|+.|++++|..++.+|... .+++|+.|++++|..+..++. ...+|+.|+|++|.+..+|..+..+
T Consensus 795 P~si~~L~~L~~L~Ls~C~~L~~LP~~~--~L~sL~~L~Ls~c~~L~~~p~----~~~nL~~L~Ls~n~i~~iP~si~~l 868 (1153)
T PLN03210 795 PSSIQNLHKLEHLEIENCINLETLPTGI--NLESLESLDLSGCSRLRTFPD----ISTNISDLNLSRTGIEEVPWWIEKF 868 (1153)
T ss_pred ChhhhCCCCCCEEECCCCCCcCeeCCCC--CccccCEEECCCCCccccccc----cccccCEeECCCCCCccChHHHhcC
Confidence 4456666677777777664566665432 456666666666543433322 1245667777777777777666666
Q ss_pred CCccEEEccC
Q psy16571 82 PELRTIDIAE 91 (150)
Q Consensus 82 ~~L~~L~l~~ 91 (150)
++|+.|++.+
T Consensus 869 ~~L~~L~L~~ 878 (1153)
T PLN03210 869 SNLSFLDMNG 878 (1153)
T ss_pred CCCCEEECCC
Confidence 7777776665
No 29
>KOG1859|consensus
Probab=98.22 E-value=9e-08 Score=75.25 Aligned_cols=85 Identities=26% Similarity=0.373 Sum_probs=49.1
Q ss_pred cccCccccceeccCCCcCcccccCcccCCCCCCCEEeCCCCCCCCccchhhcCCCCCCCeEecCCCCccccCcCcCCCCC
Q psy16571 4 EVKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESMLAWPE 83 (150)
Q Consensus 4 ~f~~l~~L~~L~l~~n~~l~~i~~~~~~~l~~L~~l~l~~n~~l~~~~~~~~~~l~~L~~l~l~~n~l~~lp~~~~~~~~ 83 (150)
+++-++.|+.|++++| .++.+. .+..++.|++||+++|. +..++.-...+. +|+.|.|++|.++++ .++-++.+
T Consensus 182 SLqll~ale~LnLshN-k~~~v~--~Lr~l~~LkhLDlsyN~-L~~vp~l~~~gc-~L~~L~lrnN~l~tL-~gie~Lks 255 (1096)
T KOG1859|consen 182 SLQLLPALESLNLSHN-KFTKVD--NLRRLPKLKHLDLSYNC-LRHVPQLSMVGC-KLQLLNLRNNALTTL-RGIENLKS 255 (1096)
T ss_pred HHHHHHHhhhhccchh-hhhhhH--HHHhcccccccccccch-hccccccchhhh-hheeeeecccHHHhh-hhHHhhhh
Confidence 4445566777777777 777765 46677777888887775 766664332222 255666666655554 22333444
Q ss_pred ccEEEccCCCc
Q psy16571 84 LRTIDIAENPI 94 (150)
Q Consensus 84 L~~L~l~~N~~ 94 (150)
|..|+++.|-+
T Consensus 256 L~~LDlsyNll 266 (1096)
T KOG1859|consen 256 LYGLDLSYNLL 266 (1096)
T ss_pred hhccchhHhhh
Confidence 44444444433
No 30
>KOG4579|consensus
Probab=98.14 E-value=1.1e-07 Score=60.52 Aligned_cols=86 Identities=21% Similarity=0.391 Sum_probs=50.2
Q ss_pred ceeccCCCcCcccccC--cccCCCCCCCEEeCCCCCCCCccchhhcCCCCCCCeEecCCCCccccCcCcCCCCCccEEEc
Q psy16571 12 KRLEITGASNLTRVRK--GAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESMLAWPELRTIDI 89 (150)
Q Consensus 12 ~~L~l~~n~~l~~i~~--~~~~~l~~L~~l~l~~n~~l~~~~~~~~~~l~~L~~l~l~~n~l~~lp~~~~~~~~L~~L~l 89 (150)
..++++.+ .+.+++. ..+.....|..+++++|. +..+++..-...+.++.+++++|.|+.+|.++..++.|+.+++
T Consensus 30 h~ldLssc-~lm~i~davy~l~~~~el~~i~ls~N~-fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl 107 (177)
T KOG4579|consen 30 HFLDLSSC-QLMYIADAVYMLSKGYELTKISLSDNG-FKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNL 107 (177)
T ss_pred hhcccccc-hhhHHHHHHHHHhCCceEEEEecccch-hhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhccc
Confidence 34556655 5554442 122334445556677773 6666665333345666677777777777766666677777777
Q ss_pred cCCCcccccC
Q psy16571 90 AENPIECGCN 99 (150)
Q Consensus 90 ~~N~~~c~c~ 99 (150)
+.|++.-...
T Consensus 108 ~~N~l~~~p~ 117 (177)
T KOG4579|consen 108 RFNPLNAEPR 117 (177)
T ss_pred ccCccccchH
Confidence 7777665443
No 31
>KOG1259|consensus
Probab=98.13 E-value=5.8e-07 Score=64.42 Aligned_cols=91 Identities=25% Similarity=0.306 Sum_probs=62.8
Q ss_pred cCccccceeccCCCcCcccccCcccCCCCCCCEEeCCCCCCCCccchhh---------------------cCCCCCCCeE
Q psy16571 6 KGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDA---------------------LVGLPNLYHL 64 (150)
Q Consensus 6 ~~l~~L~~L~l~~n~~l~~i~~~~~~~l~~L~~l~l~~n~~l~~~~~~~---------------------~~~l~~L~~l 64 (150)
.-++.++.|++++| .+..+.. +..+++|..|++++|. ++.+.... +..+-+|..|
T Consensus 304 KL~Pkir~L~lS~N-~i~~v~n--La~L~~L~~LDLS~N~-Ls~~~Gwh~KLGNIKtL~La~N~iE~LSGL~KLYSLvnL 379 (490)
T KOG1259|consen 304 KLAPKLRRLILSQN-RIRTVQN--LAELPQLQLLDLSGNL-LAECVGWHLKLGNIKTLKLAQNKIETLSGLRKLYSLVNL 379 (490)
T ss_pred hhccceeEEecccc-ceeeehh--hhhcccceEeecccch-hHhhhhhHhhhcCEeeeehhhhhHhhhhhhHhhhhheec
Confidence 33567788888888 8887765 6678888888888885 65544321 1233456677
Q ss_pred ecCCCCccccCc--CcCCCCCccEEEccCCCcccccCh
Q psy16571 65 NLKENAFTSFSE--SMLAWPELRTIDIAENPIECGCNI 100 (150)
Q Consensus 65 ~l~~n~l~~lp~--~~~~~~~L~~L~l~~N~~~c~c~~ 100 (150)
++++|+|..+.. .+++++.|..+.+.+||+.-.-+.
T Consensus 380 Dl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~vdY 417 (490)
T KOG1259|consen 380 DLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGSVDY 417 (490)
T ss_pred cccccchhhHHHhcccccccHHHHHhhcCCCccccchH
Confidence 777777776543 567788888888888888776554
No 32
>KOG0532|consensus
Probab=98.09 E-value=4e-07 Score=69.81 Aligned_cols=88 Identities=18% Similarity=0.334 Sum_probs=59.8
Q ss_pred cccCccccceeccCCCcCcccccCcccCCCCCCCEEeCCCCCCCCccchhhcCCCCCCCeEecCCCCccccCcCcCCCCC
Q psy16571 4 EVKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESMLAWPE 83 (150)
Q Consensus 4 ~f~~l~~L~~L~l~~n~~l~~i~~~~~~~l~~L~~l~l~~n~~l~~~~~~~~~~l~~L~~l~l~~n~l~~lp~~~~~~~~ 83 (150)
.++.+..|..|+.+.| .+..+++ .+.++.+|+.+.+..|. +..+++.. ..+ .|..||++.|++..||..+.++..
T Consensus 161 ~ig~~~tl~~ld~s~n-ei~slps-ql~~l~slr~l~vrRn~-l~~lp~El-~~L-pLi~lDfScNkis~iPv~fr~m~~ 235 (722)
T KOG0532|consen 161 EIGLLPTLAHLDVSKN-EIQSLPS-QLGYLTSLRDLNVRRNH-LEDLPEEL-CSL-PLIRLDFSCNKISYLPVDFRKMRH 235 (722)
T ss_pred ccccchhHHHhhhhhh-hhhhchH-HhhhHHHHHHHHHhhhh-hhhCCHHH-hCC-ceeeeecccCceeecchhhhhhhh
Confidence 3344445555555555 5555554 34455555555555554 55555543 233 377899999999999999999999
Q ss_pred ccEEEccCCCccc
Q psy16571 84 LRTIDIAENPIEC 96 (150)
Q Consensus 84 L~~L~l~~N~~~c 96 (150)
|++|.|.+||+.-
T Consensus 236 Lq~l~LenNPLqS 248 (722)
T KOG0532|consen 236 LQVLQLENNPLQS 248 (722)
T ss_pred heeeeeccCCCCC
Confidence 9999999999974
No 33
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=98.09 E-value=9.8e-06 Score=65.31 Aligned_cols=77 Identities=22% Similarity=0.307 Sum_probs=43.8
Q ss_pred ccceeccCCCcCcccccCcccCCCCCCCEEeCCCCCCCCccchhhcCCCCCCCeEecCCCCccccCcCcCCCCCccEEEc
Q psy16571 10 YLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESMLAWPELRTIDI 89 (150)
Q Consensus 10 ~L~~L~l~~n~~l~~i~~~~~~~l~~L~~l~l~~n~~l~~~~~~~~~~l~~L~~l~l~~n~l~~lp~~~~~~~~L~~L~l 89 (150)
+|+.|++++| .++.++... ..+|+.|++++|. +..++... ..+|+.|++++|+++.+|..+. .+|+.|++
T Consensus 221 nL~~L~Ls~N-~LtsLP~~l---~~~L~~L~Ls~N~-L~~LP~~l---~s~L~~L~Ls~N~L~~LP~~l~--~sL~~L~L 290 (754)
T PRK15370 221 NIKTLYANSN-QLTSIPATL---PDTIQEMELSINR-ITELPERL---PSALQSLDLFHNKISCLPENLP--EELRYLSV 290 (754)
T ss_pred CCCEEECCCC-ccccCChhh---hccccEEECcCCc-cCcCChhH---hCCCCEEECcCCccCccccccC--CCCcEEEC
Confidence 3444444444 444443321 1245555555553 55554332 1357777777777777776554 47888888
Q ss_pred cCCCccc
Q psy16571 90 AENPIEC 96 (150)
Q Consensus 90 ~~N~~~c 96 (150)
++|.+..
T Consensus 291 s~N~Lt~ 297 (754)
T PRK15370 291 YDNSIRT 297 (754)
T ss_pred CCCcccc
Confidence 8887764
No 34
>KOG1644|consensus
Probab=98.09 E-value=5e-06 Score=56.25 Aligned_cols=88 Identities=26% Similarity=0.342 Sum_probs=71.9
Q ss_pred ccccCccccceeccCCCcCcccccCcccCCCCCCCEEeCCCCCCCCccch-hhcCCCCCCCeEecCCCCccccCcC----
Q psy16571 3 KEVKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEE-DALVGLPNLYHLNLKENAFTSFSES---- 77 (150)
Q Consensus 3 ~~f~~l~~L~~L~l~~n~~l~~i~~~~~~~l~~L~~l~l~~n~~l~~~~~-~~~~~l~~L~~l~l~~n~l~~lp~~---- 77 (150)
+.|..+..|.+|.+++| +|+.|.+..-..+++|..|.+.+|+ |..+.. ..+..++.|+.|.+-+|.+..-...
T Consensus 58 ~~lp~l~rL~tLll~nN-rIt~I~p~L~~~~p~l~~L~LtnNs-i~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yv 135 (233)
T KOG1644|consen 58 DNLPHLPRLHTLLLNNN-RITRIDPDLDTFLPNLKTLILTNNS-IQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYV 135 (233)
T ss_pred ccCCCccccceEEecCC-cceeeccchhhhccccceEEecCcc-hhhhhhcchhccCCccceeeecCCchhcccCceeEE
Confidence 35778899999999999 9999999887888999999999996 876543 3356789999999999998865542
Q ss_pred cCCCCCccEEEccCC
Q psy16571 78 MLAWPELRTIDIAEN 92 (150)
Q Consensus 78 ~~~~~~L~~L~l~~N 92 (150)
+..+++|+.|++.+-
T Consensus 136 l~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 136 LYKLPSLRTLDFQKV 150 (233)
T ss_pred EEecCcceEeehhhh
Confidence 445889999998764
No 35
>KOG1859|consensus
Probab=98.05 E-value=1.4e-07 Score=74.30 Aligned_cols=88 Identities=26% Similarity=0.405 Sum_probs=72.3
Q ss_pred ccCccccceeccCCCcCcccccCcccCCCCCCCEEeCCCCCCCCccchhhcCCCCCCCeEecCCCCccccCcC--cCCCC
Q psy16571 5 VKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSES--MLAWP 82 (150)
Q Consensus 5 f~~l~~L~~L~l~~n~~l~~i~~~~~~~l~~L~~l~l~~n~~l~~~~~~~~~~l~~L~~l~l~~n~l~~lp~~--~~~~~ 82 (150)
+..++.|++|||++| .+..++.-...++. |..|.+++|. ++.+.. +.++.+|+.||++.|-|.....- ++.+.
T Consensus 205 Lr~l~~LkhLDlsyN-~L~~vp~l~~~gc~-L~~L~lrnN~-l~tL~g--ie~LksL~~LDlsyNll~~hseL~pLwsLs 279 (1096)
T KOG1859|consen 205 LRRLPKLKHLDLSYN-CLRHVPQLSMVGCK-LQLLNLRNNA-LTTLRG--IENLKSLYGLDLSYNLLSEHSELEPLWSLS 279 (1096)
T ss_pred HHhcccccccccccc-hhccccccchhhhh-heeeeecccH-HHhhhh--HHhhhhhhccchhHhhhhcchhhhHHHHHH
Confidence 456889999999999 99999976555555 9999999996 888765 35789999999999998866442 33467
Q ss_pred CccEEEccCCCcccc
Q psy16571 83 ELRTIDIAENPIECG 97 (150)
Q Consensus 83 ~L~~L~l~~N~~~c~ 97 (150)
.|+.|.|.|||+-|.
T Consensus 280 ~L~~L~LeGNPl~c~ 294 (1096)
T KOG1859|consen 280 SLIVLWLEGNPLCCA 294 (1096)
T ss_pred HHHHHhhcCCccccC
Confidence 899999999999775
No 36
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.00 E-value=2.7e-05 Score=65.75 Aligned_cols=83 Identities=20% Similarity=0.354 Sum_probs=42.2
Q ss_pred ccCccccceeccCCCcCcccccCcccCCCCCCCEEeCCCCCCCCccchhhcCCCCCCCeEecCCC-CccccCcCcCCCCC
Q psy16571 5 VKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKEN-AFTSFSESMLAWPE 83 (150)
Q Consensus 5 f~~l~~L~~L~l~~n~~l~~i~~~~~~~l~~L~~l~l~~n~~l~~~~~~~~~~l~~L~~l~l~~n-~l~~lp~~~~~~~~ 83 (150)
+..+++|+.|+++++..+..++. +..+++|+.|++++|..+..++. .+..+++|+.|+++++ .+..+|..+ ++++
T Consensus 630 ~~~l~~Lk~L~Ls~~~~l~~ip~--ls~l~~Le~L~L~~c~~L~~lp~-si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~s 705 (1153)
T PLN03210 630 VHSLTGLRNIDLRGSKNLKEIPD--LSMATNLETLKLSDCSSLVELPS-SIQYLNKLEDLDMSRCENLEILPTGI-NLKS 705 (1153)
T ss_pred cccCCCCCEEECCCCCCcCcCCc--cccCCcccEEEecCCCCccccch-hhhccCCCCEEeCCCCCCcCccCCcC-CCCC
Confidence 34455556666655433444442 44455666666665533444433 3455566666666654 445555433 3444
Q ss_pred ccEEEccC
Q psy16571 84 LRTIDIAE 91 (150)
Q Consensus 84 L~~L~l~~ 91 (150)
|+.|++++
T Consensus 706 L~~L~Lsg 713 (1153)
T PLN03210 706 LYRLNLSG 713 (1153)
T ss_pred CCEEeCCC
Confidence 44444444
No 37
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=97.97 E-value=1.8e-05 Score=63.87 Aligned_cols=78 Identities=23% Similarity=0.342 Sum_probs=60.3
Q ss_pred cccceeccCCCcCcccccCcccCCCCCCCEEeCCCCCCCCccchhhcCCCCCCCeEecCCCCccccCcCcCCCCCccEEE
Q psy16571 9 SYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESMLAWPELRTID 88 (150)
Q Consensus 9 ~~L~~L~l~~n~~l~~i~~~~~~~l~~L~~l~l~~n~~l~~~~~~~~~~l~~L~~l~l~~n~l~~lp~~~~~~~~L~~L~ 88 (150)
..|+.|++++| .++.++...+ .+|+.|++++|. ++.++... ..+|+.|+|++|.+..+|..+. .+|+.|+
T Consensus 199 ~~L~~L~Ls~N-~LtsLP~~l~---~nL~~L~Ls~N~-LtsLP~~l---~~~L~~L~Ls~N~L~~LP~~l~--s~L~~L~ 268 (754)
T PRK15370 199 EQITTLILDNN-ELKSLPENLQ---GNIKTLYANSNQ-LTSIPATL---PDTIQEMELSINRITELPERLP--SALQSLD 268 (754)
T ss_pred cCCcEEEecCC-CCCcCChhhc---cCCCEEECCCCc-cccCChhh---hccccEEECcCCccCcCChhHh--CCCCEEE
Confidence 35788888888 8888876543 478888999885 88876542 2468889999999988887664 4789999
Q ss_pred ccCCCccc
Q psy16571 89 IAENPIEC 96 (150)
Q Consensus 89 l~~N~~~c 96 (150)
+++|.+..
T Consensus 269 Ls~N~L~~ 276 (754)
T PRK15370 269 LFHNKISC 276 (754)
T ss_pred CcCCccCc
Confidence 99998763
No 38
>KOG4579|consensus
Probab=97.94 E-value=8.3e-07 Score=56.68 Aligned_cols=85 Identities=21% Similarity=0.264 Sum_probs=74.0
Q ss_pred CccccceeccCCCcCcccccCcccCCCCCCCEEeCCCCCCCCccchhhcCCCCCCCeEecCCCCccccCcCcCCCCCccE
Q psy16571 7 GLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESMLAWPELRT 86 (150)
Q Consensus 7 ~l~~L~~L~l~~n~~l~~i~~~~~~~l~~L~~l~l~~n~~l~~~~~~~~~~l~~L~~l~l~~n~l~~lp~~~~~~~~L~~ 86 (150)
....|..+++++| .+...++..-...+.+..+++++|. |..+|.. +..++.|+.++++.|.+...|..++.+.++..
T Consensus 51 ~~~el~~i~ls~N-~fk~fp~kft~kf~t~t~lNl~~ne-isdvPeE-~Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~~ 127 (177)
T KOG4579|consen 51 KGYELTKISLSDN-GFKKFPKKFTIKFPTATTLNLANNE-ISDVPEE-LAAMPALRSLNLRFNPLNAEPRVIAPLIKLDM 127 (177)
T ss_pred CCceEEEEecccc-hhhhCCHHHhhccchhhhhhcchhh-hhhchHH-HhhhHHhhhcccccCccccchHHHHHHHhHHH
Confidence 3456777899999 9999988666667789999999996 9999987 78899999999999999999998888889999
Q ss_pred EEccCCCc
Q psy16571 87 IDIAENPI 94 (150)
Q Consensus 87 L~l~~N~~ 94 (150)
|+..+|..
T Consensus 128 Lds~~na~ 135 (177)
T KOG4579|consen 128 LDSPENAR 135 (177)
T ss_pred hcCCCCcc
Confidence 99988864
No 39
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.93 E-value=4.8e-05 Score=47.83 Aligned_cols=86 Identities=19% Similarity=0.388 Sum_probs=59.2
Q ss_pred CccccCccccceeccCCCcCcccccCcccCCCCCCCEEeCCCCCCCCccchhhcCCCCCCCeEecCCCCccccCcCcCC-
Q psy16571 2 EKEVKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESMLA- 80 (150)
Q Consensus 2 p~~f~~l~~L~~L~l~~n~~l~~i~~~~~~~l~~L~~l~l~~n~~l~~~~~~~~~~l~~L~~l~l~~n~l~~lp~~~~~- 80 (150)
..+|.+..+|+.+.+.. .+..+...+|.++..|+.+.+..+ +..+...+|....+++.+.+.+ .+..++...+.
T Consensus 5 ~~~F~~~~~l~~i~~~~--~~~~I~~~~F~~~~~l~~i~~~~~--~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~ 79 (129)
T PF13306_consen 5 NNAFYNCSNLESITFPN--TIKKIGENAFSNCTSLKSINFPNN--LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSN 79 (129)
T ss_dssp TTTTTT-TT--EEEETS--T--EE-TTTTTT-TT-SEEEESST--TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT
T ss_pred HHHHhCCCCCCEEEECC--CeeEeChhhccccccccccccccc--ccccceeeeecccccccccccc-cccccccccccc
Confidence 45788888999999984 688999999999989999999764 8888888898888899999975 67777777666
Q ss_pred CCCccEEEccCC
Q psy16571 81 WPELRTIDIAEN 92 (150)
Q Consensus 81 ~~~L~~L~l~~N 92 (150)
++++..+.+..+
T Consensus 80 ~~~l~~i~~~~~ 91 (129)
T PF13306_consen 80 CTNLKNIDIPSN 91 (129)
T ss_dssp -TTECEEEETTT
T ss_pred cccccccccCcc
Confidence 888888888654
No 40
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=97.91 E-value=2.2e-06 Score=61.98 Aligned_cols=39 Identities=26% Similarity=0.287 Sum_probs=17.6
Q ss_pred cCccccceeccCCCcCcccccCcccCCCCC---CCEEeCCCCC
Q psy16571 6 KGLSYLKRLEITGASNLTRVRKGAFADNLN---LETLTLNKNP 45 (150)
Q Consensus 6 ~~l~~L~~L~l~~n~~l~~i~~~~~~~l~~---L~~l~l~~n~ 45 (150)
..+++|+.|++++| .+....+..+..+.. |+.+++++|.
T Consensus 78 ~~~~~L~~L~l~~~-~~~~~~~~~~~~l~~~~~L~~L~ls~~~ 119 (319)
T cd00116 78 TKGCGLQELDLSDN-ALGPDGCGVLESLLRSSSLQELKLNNNG 119 (319)
T ss_pred HhcCceeEEEccCC-CCChhHHHHHHHHhccCcccEEEeeCCc
Confidence 34445555555555 444222222222222 5555555553
No 41
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=97.84 E-value=3.1e-05 Score=62.53 Aligned_cols=17 Identities=29% Similarity=0.608 Sum_probs=8.7
Q ss_pred CCCCeEecCCCCccccC
Q psy16571 59 PNLYHLNLKENAFTSFS 75 (150)
Q Consensus 59 ~~L~~l~l~~n~l~~lp 75 (150)
++|+.|++++|.+..+|
T Consensus 302 ~~L~~LdLS~N~L~~Lp 318 (788)
T PRK15387 302 PGLQELSVSDNQLASLP 318 (788)
T ss_pred cccceeECCCCccccCC
Confidence 34555555555555444
No 42
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=97.82 E-value=1.3e-05 Score=58.03 Aligned_cols=85 Identities=22% Similarity=0.327 Sum_probs=43.2
Q ss_pred cccceeccCCCcCcccc----cCcccCCCCCCCEEeCCCCCCCCccc----hhhcCCCCCCCeEecCCCCccc-----cC
Q psy16571 9 SYLKRLEITGASNLTRV----RKGAFADNLNLETLTLNKNPKLKIIE----EDALVGLPNLYHLNLKENAFTS-----FS 75 (150)
Q Consensus 9 ~~L~~L~l~~n~~l~~i----~~~~~~~l~~L~~l~l~~n~~l~~~~----~~~~~~l~~L~~l~l~~n~l~~-----lp 75 (150)
.+|+.|++++| .++.. -...+..+..|+.+++++|. ++... ...+...++|+.|++++|.+.. +.
T Consensus 137 ~~L~~L~L~~n-~l~~~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~ 214 (319)
T cd00116 137 PALEKLVLGRN-RLEGASCEALAKALRANRDLKELNLANNG-IGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALA 214 (319)
T ss_pred CCceEEEcCCC-cCCchHHHHHHHHHHhCCCcCEEECcCCC-CchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHH
Confidence 45666666666 55411 11234445556666666664 54211 1123334566666666666542 22
Q ss_pred cCcCCCCCccEEEccCCCcc
Q psy16571 76 ESMLAWPELRTIDIAENPIE 95 (150)
Q Consensus 76 ~~~~~~~~L~~L~l~~N~~~ 95 (150)
..+..+++|+.|++++|++.
T Consensus 215 ~~~~~~~~L~~L~ls~n~l~ 234 (319)
T cd00116 215 ETLASLKSLEVLNLGDNNLT 234 (319)
T ss_pred HHhcccCCCCEEecCCCcCc
Confidence 22333566777777766654
No 43
>KOG0531|consensus
Probab=97.70 E-value=1.5e-05 Score=60.31 Aligned_cols=83 Identities=24% Similarity=0.374 Sum_probs=41.0
Q ss_pred ccCccccceeccCCCcCcccccCcccCCCCCCCEEeCCCCCCCCccchhhcCCCCCCCeEecCCCCccccCcCcCCCCCc
Q psy16571 5 VKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESMLAWPEL 84 (150)
Q Consensus 5 f~~l~~L~~L~l~~n~~l~~i~~~~~~~l~~L~~l~l~~n~~l~~~~~~~~~~l~~L~~l~l~~n~l~~lp~~~~~~~~L 84 (150)
+..+.+|..|++..| .+..+.. .+..+++|+.+++++|. |+.+.+ +..++.|+.|++.+|.|..+.. +..+..|
T Consensus 91 l~~~~~l~~l~l~~n-~i~~i~~-~l~~~~~L~~L~ls~N~-I~~i~~--l~~l~~L~~L~l~~N~i~~~~~-~~~l~~L 164 (414)
T KOG0531|consen 91 LSKLKSLEALDLYDN-KIEKIEN-LLSSLVNLQVLDLSFNK-ITKLEG--LSTLTLLKELNLSGNLISDISG-LESLKSL 164 (414)
T ss_pred cccccceeeeecccc-chhhccc-chhhhhcchheeccccc-cccccc--hhhccchhhheeccCcchhccC-Cccchhh
Confidence 344455555556555 5555543 13445555666666553 555543 2334445555555555555432 2224444
Q ss_pred cEEEccCCC
Q psy16571 85 RTIDIAENP 93 (150)
Q Consensus 85 ~~L~l~~N~ 93 (150)
+.+++++|.
T Consensus 165 ~~l~l~~n~ 173 (414)
T KOG0531|consen 165 KLLDLSYNR 173 (414)
T ss_pred hcccCCcch
Confidence 444444443
No 44
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.67 E-value=0.00015 Score=45.60 Aligned_cols=85 Identities=26% Similarity=0.409 Sum_probs=60.2
Q ss_pred CccccCccccceeccCCCcCcccccCcccCCCCCCCEEeCCCCCCCCccchhhcCCCCCCCeEecCCCCccccCcCcCCC
Q psy16571 2 EKEVKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESMLAW 81 (150)
Q Consensus 2 p~~f~~l~~L~~L~l~~n~~l~~i~~~~~~~l~~L~~l~l~~n~~l~~~~~~~~~~l~~L~~l~l~~n~l~~lp~~~~~~ 81 (150)
..+|.+..+|+.+.+..+ +..++..+|.....|+.+.+.+ . +..+....|.....++.+.+..+ +..++...+.-
T Consensus 28 ~~~F~~~~~l~~i~~~~~--~~~i~~~~F~~~~~l~~i~~~~-~-~~~i~~~~F~~~~~l~~i~~~~~-~~~i~~~~f~~ 102 (129)
T PF13306_consen 28 ENAFSNCTSLKSINFPNN--LTSIGDNAFSNCKSLESITFPN-N-LKSIGDNAFSNCTNLKNIDIPSN-ITEIGSSSFSN 102 (129)
T ss_dssp TTTTTT-TT-SEEEESST--TSCE-TTTTTT-TT-EEEEETS-T-T-EE-TTTTTT-TTECEEEETTT--BEEHTTTTTT
T ss_pred hhhccccccccccccccc--ccccceeeeecccccccccccc-c-ccccccccccccccccccccCcc-ccEEchhhhcC
Confidence 357888889999999864 8999999999998999999975 3 78888888988999999999876 77888777765
Q ss_pred CCccEEEccC
Q psy16571 82 PELRTIDIAE 91 (150)
Q Consensus 82 ~~L~~L~l~~ 91 (150)
..++.+.+..
T Consensus 103 ~~l~~i~~~~ 112 (129)
T PF13306_consen 103 CNLKEINIPS 112 (129)
T ss_dssp -T--EEE-TT
T ss_pred CCceEEEECC
Confidence 5888887764
No 45
>KOG0531|consensus
Probab=97.66 E-value=2.6e-05 Score=58.94 Aligned_cols=97 Identities=21% Similarity=0.272 Sum_probs=76.1
Q ss_pred ccCccccceeccCCCcCcccccCcccCCCCCCCEEeCCCCCCCCccchhhcCCCCCCCeEecCCCCccccCcC-cCCCCC
Q psy16571 5 VKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSES-MLAWPE 83 (150)
Q Consensus 5 f~~l~~L~~L~l~~n~~l~~i~~~~~~~l~~L~~l~l~~n~~l~~~~~~~~~~l~~L~~l~l~~n~l~~lp~~-~~~~~~ 83 (150)
+..+.+|++|++++| .|+.+.. +..++.|+.|++++|. |+.+.. +..+..|+.+++++|.+..+... ...+..
T Consensus 114 l~~~~~L~~L~ls~N-~I~~i~~--l~~l~~L~~L~l~~N~-i~~~~~--~~~l~~L~~l~l~~n~i~~ie~~~~~~~~~ 187 (414)
T KOG0531|consen 114 LSSLVNLQVLDLSFN-KITKLEG--LSTLTLLKELNLSGNL-ISDISG--LESLKSLKLLDLSYNRIVDIENDELSELIS 187 (414)
T ss_pred hhhhhcchheecccc-ccccccc--hhhccchhhheeccCc-chhccC--CccchhhhcccCCcchhhhhhhhhhhhccc
Confidence 456788999999999 9998875 6677889999999996 888764 45588899999999999988663 355778
Q ss_pred ccEEEccCCCcccccChHHHHHHH
Q psy16571 84 LRTIDIAENPIECGCNILWLREML 107 (150)
Q Consensus 84 L~~L~l~~N~~~c~c~~~~l~~~~ 107 (150)
+..+.+.+|.+...-.+..+....
T Consensus 188 l~~l~l~~n~i~~i~~~~~~~~l~ 211 (414)
T KOG0531|consen 188 LEELDLGGNSIREIEGLDLLKKLV 211 (414)
T ss_pred hHHHhccCCchhcccchHHHHHHH
Confidence 888999999888776665444443
No 46
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=97.64 E-value=3e-05 Score=58.08 Aligned_cols=79 Identities=23% Similarity=0.359 Sum_probs=37.3
Q ss_pred ccceeccCCCcCcccccCcccCCCCCCCEEeCCCCCCCCccchhhcCCCCCCCeEecCCCCccccCcCcCCCCCccEEEc
Q psy16571 10 YLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESMLAWPELRTIDI 89 (150)
Q Consensus 10 ~L~~L~l~~n~~l~~i~~~~~~~l~~L~~l~l~~n~~l~~~~~~~~~~l~~L~~l~l~~n~l~~lp~~~~~~~~L~~L~l 89 (150)
+|+.|++++| .+..++. ....++.|+.|+++.|. +..++... ...+.|..+++++|.+..+|..+.....|..+.+
T Consensus 141 nL~~L~l~~N-~i~~l~~-~~~~l~~L~~L~l~~N~-l~~l~~~~-~~~~~L~~L~ls~N~i~~l~~~~~~~~~L~~l~~ 216 (394)
T COG4886 141 NLKELDLSDN-KIESLPS-PLRNLPNLKNLDLSFND-LSDLPKLL-SNLSNLNNLDLSGNKISDLPPEIELLSALEELDL 216 (394)
T ss_pred hccccccccc-chhhhhh-hhhccccccccccCCch-hhhhhhhh-hhhhhhhheeccCCccccCchhhhhhhhhhhhhh
Confidence 4455555555 5444431 23444555555555553 54444421 1344555555555555555543323334555555
Q ss_pred cCC
Q psy16571 90 AEN 92 (150)
Q Consensus 90 ~~N 92 (150)
++|
T Consensus 217 ~~N 219 (394)
T COG4886 217 SNN 219 (394)
T ss_pred cCC
Confidence 555
No 47
>KOG0532|consensus
Probab=97.53 E-value=4.4e-06 Score=64.28 Aligned_cols=103 Identities=22% Similarity=0.290 Sum_probs=60.6
Q ss_pred CccccCccccceeccCCCcCcccccCcccCCCCCCCEEeCCCCCCCCccchhhcCCCCCCCeEecCCCCccccCcCcCCC
Q psy16571 2 EKEVKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESMLAW 81 (150)
Q Consensus 2 p~~f~~l~~L~~L~l~~n~~l~~i~~~~~~~l~~L~~l~l~~n~~l~~~~~~~~~~l~~L~~l~l~~n~l~~lp~~~~~~ 81 (150)
|.+..+|..|..|+++.| .+..++...+ .++ |+.+-+++|+ ++.++... +.++.|..++.+.|.+.++|..+..+
T Consensus 114 p~~i~~L~~lt~l~ls~N-qlS~lp~~lC-~lp-Lkvli~sNNk-l~~lp~~i-g~~~tl~~ld~s~nei~slpsql~~l 188 (722)
T KOG0532|consen 114 PEAICNLEALTFLDLSSN-QLSHLPDGLC-DLP-LKVLIVSNNK-LTSLPEEI-GLLPTLAHLDVSKNEIQSLPSQLGYL 188 (722)
T ss_pred chhhhhhhHHHHhhhccc-hhhcCChhhh-cCc-ceeEEEecCc-cccCCccc-ccchhHHHhhhhhhhhhhchHHhhhH
Confidence 344556666677777777 6766665433 233 6666666665 66665542 34455555555555555555443322
Q ss_pred ----------------------CCccEEEccCCCcc----cccChHHHHHHHhh
Q psy16571 82 ----------------------PELRTIDIAENPIE----CGCNILWLREMLVR 109 (150)
Q Consensus 82 ----------------------~~L~~L~l~~N~~~----c~c~~~~l~~~~~~ 109 (150)
-.|..|+++.|.+. |.|.|..|+...-.
T Consensus 189 ~slr~l~vrRn~l~~lp~El~~LpLi~lDfScNkis~iPv~fr~m~~Lq~l~Le 242 (722)
T KOG0532|consen 189 TSLRDLNVRRNHLEDLPEELCSLPLIRLDFSCNKISYLPVDFRKMRHLQVLQLE 242 (722)
T ss_pred HHHHHHHHhhhhhhhCCHHHhCCceeeeecccCceeecchhhhhhhhheeeeec
Confidence 24667888888763 77777776655443
No 48
>KOG4658|consensus
Probab=97.51 E-value=3.5e-05 Score=63.21 Aligned_cols=85 Identities=22% Similarity=0.386 Sum_probs=44.3
Q ss_pred ccCccccceeccCCCcCcccccCcccCCCCCCCEEeCCCCCCCCccchhhcCCCCCCCeEecCCCCcc-ccCcCcCCCCC
Q psy16571 5 VKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFT-SFSESMLAWPE 83 (150)
Q Consensus 5 f~~l~~L~~L~l~~n~~l~~i~~~~~~~l~~L~~l~l~~n~~l~~~~~~~~~~l~~L~~l~l~~n~l~-~lp~~~~~~~~ 83 (150)
|..++.|+.||+++|..+..+|. ..+.+-+|++|++++.. +..+|.. +..+..|.+|++..+.-. .+|.....+.+
T Consensus 567 f~~m~~LrVLDLs~~~~l~~LP~-~I~~Li~LryL~L~~t~-I~~LP~~-l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~ 643 (889)
T KOG4658|consen 567 FRSLPLLRVLDLSGNSSLSKLPS-SIGELVHLRYLDLSDTG-ISHLPSG-LGNLKKLIYLNLEVTGRLESIPGILLELQS 643 (889)
T ss_pred HhhCcceEEEECCCCCccCcCCh-HHhhhhhhhcccccCCC-ccccchH-HHHHHhhheeccccccccccccchhhhccc
Confidence 45555666666665544555543 34555666666666553 5555543 455555666666555332 23222222556
Q ss_pred ccEEEccCC
Q psy16571 84 LRTIDIAEN 92 (150)
Q Consensus 84 L~~L~l~~N 92 (150)
|+.|.+..-
T Consensus 644 Lr~L~l~~s 652 (889)
T KOG4658|consen 644 LRVLRLPRS 652 (889)
T ss_pred ccEEEeecc
Confidence 666655443
No 49
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=97.51 E-value=3.8e-05 Score=57.50 Aligned_cols=87 Identities=25% Similarity=0.350 Sum_probs=59.7
Q ss_pred ccccceeccCCCcCcccccCcccCCCC-CCCEEeCCCCCCCCccchhhcCCCCCCCeEecCCCCccccCcCcCCCCCccE
Q psy16571 8 LSYLKRLEITGASNLTRVRKGAFADNL-NLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESMLAWPELRT 86 (150)
Q Consensus 8 l~~L~~L~l~~n~~l~~i~~~~~~~l~-~L~~l~l~~n~~l~~~~~~~~~~l~~L~~l~l~~n~l~~lp~~~~~~~~L~~ 86 (150)
+..+..|++.+| .+..+++. ...+. +|+.+++++|. +..++.. ...++.|+.|++++|.+..+|......+.|..
T Consensus 115 ~~~l~~L~l~~n-~i~~i~~~-~~~~~~nL~~L~l~~N~-i~~l~~~-~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~ 190 (394)
T COG4886 115 LTNLTSLDLDNN-NITDIPPL-IGLLKSNLKELDLSDNK-IESLPSP-LRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNN 190 (394)
T ss_pred ccceeEEecCCc-ccccCccc-cccchhhcccccccccc-hhhhhhh-hhccccccccccCCchhhhhhhhhhhhhhhhh
Confidence 355777777777 77777763 23332 78888888875 7776422 35677788888888888887776556677778
Q ss_pred EEccCCCccccc
Q psy16571 87 IDIAENPIECGC 98 (150)
Q Consensus 87 L~l~~N~~~c~c 98 (150)
|++++|.+.---
T Consensus 191 L~ls~N~i~~l~ 202 (394)
T COG4886 191 LDLSGNKISDLP 202 (394)
T ss_pred eeccCCccccCc
Confidence 888887765443
No 50
>KOG4658|consensus
Probab=97.45 E-value=5.1e-05 Score=62.28 Aligned_cols=84 Identities=17% Similarity=0.207 Sum_probs=72.2
Q ss_pred cccceeccCCCcC--cccccCcccCCCCCCCEEeCCCCCCCCccchhhcCCCCCCCeEecCCCCccccCcCcCCCCCccE
Q psy16571 9 SYLKRLEITGASN--LTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESMLAWPELRT 86 (150)
Q Consensus 9 ~~L~~L~l~~n~~--l~~i~~~~~~~l~~L~~l~l~~n~~l~~~~~~~~~~l~~L~~l~l~~n~l~~lp~~~~~~~~L~~ 86 (150)
+.|..|-+.+| . +..++...|..++.|..||+++|..+..+|.. .+.+-+|+.|++++..+..+|.++.++..|.+
T Consensus 545 ~~L~tLll~~n-~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~-I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~ 622 (889)
T KOG4658|consen 545 PKLRTLLLQRN-SDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSS-IGELVHLRYLDLSDTGISHLPSGLGNLKKLIY 622 (889)
T ss_pred CccceEEEeec-chhhhhcCHHHHhhCcceEEEECCCCCccCcCChH-HhhhhhhhcccccCCCccccchHHHHHHhhhe
Confidence 36888888888 5 77888778999999999999998767777664 57899999999999999999999999999999
Q ss_pred EEccCCCc
Q psy16571 87 IDIAENPI 94 (150)
Q Consensus 87 L~l~~N~~ 94 (150)
|++..+.-
T Consensus 623 Lnl~~~~~ 630 (889)
T KOG4658|consen 623 LNLEVTGR 630 (889)
T ss_pred eccccccc
Confidence 99987653
No 51
>PF01463 LRRCT: Leucine rich repeat C-terminal domain; InterPro: IPR000483 Leucine-rich repeats (LRR, see IPR001611 from INTERPRO) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions []. Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response. LRRs are often flanked by cysteine-rich domains: an N-terminal LRR domain (IPR000372 from INTERPRO) and a C-terminal LRR domain. This entry represents the C-terminal LRR domain. ; PDB: 3RFE_B 3REZ_D 2WFH_A 2V70_B 2V9S_C 2V9T_B 1W8A_A.
Probab=97.19 E-value=0.00017 Score=32.25 Aligned_cols=25 Identities=28% Similarity=0.510 Sum_probs=18.7
Q ss_pred CeeeCCCccccCccccccccccCCCC
Q psy16571 114 AVFCNSPAPLKYKSLISLSAEDLGSR 139 (150)
Q Consensus 114 ~~~C~~~~~l~~~~~~~~~~~~~~C~ 139 (150)
+++|++|..++| ++.++...++.|.
T Consensus 1 ~~~Ca~P~~lrg-~l~~~~~~~f~C~ 25 (25)
T PF01463_consen 1 NARCASPPELRG-PLLDLPPSDFKCS 25 (25)
T ss_dssp T-BEEESGGGTT-BGGGSSGGG----
T ss_pred CCccCCChHHcC-cHhhCCcccCcCC
Confidence 368999999999 9999999999884
No 52
>KOG2123|consensus
Probab=97.00 E-value=1.9e-05 Score=56.22 Aligned_cols=82 Identities=29% Similarity=0.395 Sum_probs=67.6
Q ss_pred CccccceeccCCCcCcccccCcccCCCCCCCEEeCCCCCCCCccchhhcCCCCCCCeEecCCCCccccCc--CcCCCCCc
Q psy16571 7 GLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSE--SMLAWPEL 84 (150)
Q Consensus 7 ~l~~L~~L~l~~n~~l~~i~~~~~~~l~~L~~l~l~~n~~l~~~~~~~~~~l~~L~~l~l~~n~l~~lp~--~~~~~~~L 84 (150)
.|.++++|++-++ .+..|. ....++.|+.|.|+-|+ |+.+.+ |..+++|+.|+|..|.|..+.+ .+.++++|
T Consensus 17 dl~~vkKLNcwg~-~L~DIs--ic~kMp~lEVLsLSvNk-IssL~p--l~rCtrLkElYLRkN~I~sldEL~YLknlpsL 90 (388)
T KOG2123|consen 17 DLENVKKLNCWGC-GLDDIS--ICEKMPLLEVLSLSVNK-ISSLAP--LQRCTRLKELYLRKNCIESLDELEYLKNLPSL 90 (388)
T ss_pred HHHHhhhhcccCC-CccHHH--HHHhcccceeEEeeccc-cccchh--HHHHHHHHHHHHHhcccccHHHHHHHhcCchh
Confidence 3567788888888 888875 46779999999999996 988876 5678999999999999988765 35568999
Q ss_pred cEEEccCCCc
Q psy16571 85 RTIDIAENPI 94 (150)
Q Consensus 85 ~~L~l~~N~~ 94 (150)
+.|-|..||.
T Consensus 91 r~LWL~ENPC 100 (388)
T KOG2123|consen 91 RTLWLDENPC 100 (388)
T ss_pred hhHhhccCCc
Confidence 9999999984
No 53
>KOG3207|consensus
Probab=96.99 E-value=0.00032 Score=52.73 Aligned_cols=85 Identities=24% Similarity=0.350 Sum_probs=41.6
Q ss_pred ccccceeccCCCcCcccccCcccCCCCCCCEEeCCCCCCCCccch-hhcCCCCCCCeEecCCCCcccc--CcC-----cC
Q psy16571 8 LSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEE-DALVGLPNLYHLNLKENAFTSF--SES-----ML 79 (150)
Q Consensus 8 l~~L~~L~l~~n~~l~~i~~~~~~~l~~L~~l~l~~n~~l~~~~~-~~~~~l~~L~~l~l~~n~l~~l--p~~-----~~ 79 (150)
.++|+.|++.+| ..-.+......-+..|+.|+|++|. +-..+. .....++.|..|+++.+++.++ |+. .-
T Consensus 221 fPsl~~L~L~~N-~~~~~~~~~~~i~~~L~~LdLs~N~-li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~ 298 (505)
T KOG3207|consen 221 FPSLEVLYLEAN-EIILIKATSTKILQTLQELDLSNNN-LIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTH 298 (505)
T ss_pred CCcHHHhhhhcc-cccceecchhhhhhHHhhccccCCc-ccccccccccccccchhhhhccccCcchhcCCCccchhhhc
Confidence 345555555555 3333332333344556666666664 433331 1223455556666666665532 221 11
Q ss_pred CCCCccEEEccCCCc
Q psy16571 80 AWPELRTIDIAENPI 94 (150)
Q Consensus 80 ~~~~L~~L~l~~N~~ 94 (150)
.+++|+.|.+..|++
T Consensus 299 ~f~kL~~L~i~~N~I 313 (505)
T KOG3207|consen 299 TFPKLEYLNISENNI 313 (505)
T ss_pred ccccceeeecccCcc
Confidence 255666666666665
No 54
>KOG3207|consensus
Probab=96.94 E-value=0.0004 Score=52.23 Aligned_cols=91 Identities=22% Similarity=0.299 Sum_probs=63.3
Q ss_pred ccCccccceeccCCCcCcccccC-cccCCCCCCCEEeCCCCCCCCccchhhc------CCCCCCCeEecCCCCccccCc-
Q psy16571 5 VKGLSYLKRLEITGASNLTRVRK-GAFADNLNLETLTLNKNPKLKIIEEDAL------VGLPNLYHLNLKENAFTSFSE- 76 (150)
Q Consensus 5 f~~l~~L~~L~l~~n~~l~~i~~-~~~~~l~~L~~l~l~~n~~l~~~~~~~~------~~l~~L~~l~l~~n~l~~lp~- 76 (150)
+.-+..|++|+|++| .+-..+. .....++.|..+.++.+. +..+....- ...++|+.|++..|++..++.
T Consensus 242 ~~i~~~L~~LdLs~N-~li~~~~~~~~~~l~~L~~Lnls~tg-i~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl 319 (505)
T KOG3207|consen 242 TKILQTLQELDLSNN-NLIDFDQGYKVGTLPGLNQLNLSSTG-IASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSL 319 (505)
T ss_pred hhhhhHHhhccccCC-cccccccccccccccchhhhhccccC-cchhcCCCccchhhhcccccceeeecccCcccccccc
Confidence 344678899999999 6655542 345668888888998885 776553211 346899999999999976654
Q ss_pred -CcCCCCCccEEEccCCCcccc
Q psy16571 77 -SMLAWPELRTIDIAENPIECG 97 (150)
Q Consensus 77 -~~~~~~~L~~L~l~~N~~~c~ 97 (150)
.+..+++++.+.+..|+++-.
T Consensus 320 ~~l~~l~nlk~l~~~~n~ln~e 341 (505)
T KOG3207|consen 320 NHLRTLENLKHLRITLNYLNKE 341 (505)
T ss_pred chhhccchhhhhhccccccccc
Confidence 344466777777666666543
No 55
>KOG2739|consensus
Probab=96.70 E-value=0.0017 Score=45.72 Aligned_cols=84 Identities=25% Similarity=0.307 Sum_probs=53.8
Q ss_pred CccccceeccCCCcCcccccCcccCCCCCCCEEeCCCC--CCCCccchhhcCCCCCCCeEecCCCCccccCc--CcCCCC
Q psy16571 7 GLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKN--PKLKIIEEDALVGLPNLYHLNLKENAFTSFSE--SMLAWP 82 (150)
Q Consensus 7 ~l~~L~~L~l~~n~~l~~i~~~~~~~l~~L~~l~l~~n--~~l~~~~~~~~~~l~~L~~l~l~~n~l~~lp~--~~~~~~ 82 (150)
.+..|+.+.+.+. .++.+. .|..+++|+.|.++.| +....++.-+ ...++|+++++++|+++.+.. .+..+.
T Consensus 41 ~~~~le~ls~~n~-gltt~~--~~P~Lp~LkkL~lsdn~~~~~~~l~vl~-e~~P~l~~l~ls~Nki~~lstl~pl~~l~ 116 (260)
T KOG2739|consen 41 EFVELELLSVINV-GLTTLT--NFPKLPKLKKLELSDNYRRVSGGLEVLA-EKAPNLKVLNLSGNKIKDLSTLRPLKELE 116 (260)
T ss_pred cccchhhhhhhcc-ceeecc--cCCCcchhhhhcccCCcccccccceehh-hhCCceeEEeecCCccccccccchhhhhc
Confidence 3445666666666 666665 3777889999999988 4122333332 344899999999998875322 233466
Q ss_pred CccEEEccCCCc
Q psy16571 83 ELRTIDIAENPI 94 (150)
Q Consensus 83 ~L~~L~l~~N~~ 94 (150)
+|..|++..+.-
T Consensus 117 nL~~Ldl~n~~~ 128 (260)
T KOG2739|consen 117 NLKSLDLFNCSV 128 (260)
T ss_pred chhhhhcccCCc
Confidence 777777766543
No 56
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.65 E-value=0.00096 Score=28.73 Aligned_cols=17 Identities=35% Similarity=0.657 Sum_probs=10.3
Q ss_pred cceeccCCCcCcccccCc
Q psy16571 11 LKRLEITGASNLTRVRKG 28 (150)
Q Consensus 11 L~~L~l~~n~~l~~i~~~ 28 (150)
|++|++++| .++.+|+.
T Consensus 2 L~~Ldls~n-~l~~ip~~ 18 (22)
T PF00560_consen 2 LEYLDLSGN-NLTSIPSS 18 (22)
T ss_dssp ESEEEETSS-EESEEGTT
T ss_pred ccEEECCCC-cCEeCChh
Confidence 566666666 66665554
No 57
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.55 E-value=0.0013 Score=28.32 Aligned_cols=17 Identities=41% Similarity=0.444 Sum_probs=9.9
Q ss_pred CCeEecCCCCccccCcC
Q psy16571 61 LYHLNLKENAFTSFSES 77 (150)
Q Consensus 61 L~~l~l~~n~l~~lp~~ 77 (150)
|+.|+|++|.++.+|..
T Consensus 2 L~~Ldls~n~l~~ip~~ 18 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIPSS 18 (22)
T ss_dssp ESEEEETSSEESEEGTT
T ss_pred ccEEECCCCcCEeCChh
Confidence 45566666666655554
No 58
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=96.46 E-value=0.0019 Score=25.98 Aligned_cols=16 Identities=44% Similarity=0.609 Sum_probs=6.8
Q ss_pred CCCeEecCCCCccccC
Q psy16571 60 NLYHLNLKENAFTSFS 75 (150)
Q Consensus 60 ~L~~l~l~~n~l~~lp 75 (150)
+|+.|++++|+++.+|
T Consensus 2 ~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSLP 17 (17)
T ss_dssp T-SEEEETSS--SSE-
T ss_pred ccCEEECCCCCCCCCc
Confidence 4555666666555544
No 59
>KOG3665|consensus
Probab=96.34 E-value=0.0019 Score=52.03 Aligned_cols=87 Identities=22% Similarity=0.337 Sum_probs=43.5
Q ss_pred ccccceeccCCCcCccccc-CcccCCCCCCCEEeCCCCCCCCccchhhcCCCCCCCeEecCCCCccccC--cCcCCCCCc
Q psy16571 8 LSYLKRLEITGASNLTRVR-KGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFS--ESMLAWPEL 84 (150)
Q Consensus 8 l~~L~~L~l~~n~~l~~i~-~~~~~~l~~L~~l~l~~n~~l~~~~~~~~~~l~~L~~l~l~~n~l~~lp--~~~~~~~~L 84 (150)
|+.|+.|.+++- .+..-. ...+.++++|..||+++.. ++.+. ..+.+++|+.|.+.+=.+.... ..+|++.+|
T Consensus 147 LPsL~sL~i~~~-~~~~~dF~~lc~sFpNL~sLDIS~Tn-I~nl~--GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L 222 (699)
T KOG3665|consen 147 LPSLRSLVISGR-QFDNDDFSQLCASFPNLRSLDISGTN-ISNLS--GISRLKNLQVLSMRNLEFESYQDLIDLFNLKKL 222 (699)
T ss_pred CcccceEEecCc-eecchhHHHHhhccCccceeecCCCC-ccCcH--HHhccccHHHHhccCCCCCchhhHHHHhcccCC
Confidence 466666666664 332221 1234456666666776664 65552 2345555555555433333221 134555566
Q ss_pred cEEEccCCCccccc
Q psy16571 85 RTIDIAENPIECGC 98 (150)
Q Consensus 85 ~~L~l~~N~~~c~c 98 (150)
+.||++.....-++
T Consensus 223 ~vLDIS~~~~~~~~ 236 (699)
T KOG3665|consen 223 RVLDISRDKNNDDT 236 (699)
T ss_pred Ceeeccccccccch
Confidence 66666554444333
No 60
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=96.34 E-value=0.0029 Score=28.28 Aligned_cols=21 Identities=33% Similarity=0.605 Sum_probs=10.8
Q ss_pred CCCCeEecCCCCccccCcCcC
Q psy16571 59 PNLYHLNLKENAFTSFSESML 79 (150)
Q Consensus 59 ~~L~~l~l~~n~l~~lp~~~~ 79 (150)
++|+.|+|++|.|..+|..++
T Consensus 2 ~~L~~L~L~~N~l~~lp~~~f 22 (26)
T smart00369 2 PNLRELDLSNNQLSSLPPGAF 22 (26)
T ss_pred CCCCEEECCCCcCCcCCHHHc
Confidence 345555555555555554443
No 61
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=96.34 E-value=0.0029 Score=28.28 Aligned_cols=21 Identities=33% Similarity=0.605 Sum_probs=10.8
Q ss_pred CCCCeEecCCCCccccCcCcC
Q psy16571 59 PNLYHLNLKENAFTSFSESML 79 (150)
Q Consensus 59 ~~L~~l~l~~n~l~~lp~~~~ 79 (150)
++|+.|+|++|.|..+|..++
T Consensus 2 ~~L~~L~L~~N~l~~lp~~~f 22 (26)
T smart00370 2 PNLRELDLSNNQLSSLPPGAF 22 (26)
T ss_pred CCCCEEECCCCcCCcCCHHHc
Confidence 345555555555555554443
No 62
>KOG2982|consensus
Probab=96.25 E-value=0.0014 Score=47.35 Aligned_cols=82 Identities=22% Similarity=0.289 Sum_probs=49.4
Q ss_pred cccceeccCCCcCcccccC--cccCCCCCCCEEeCCCCCCCCccchhhcCCCCCCCeEecCCCCcc--ccCcCcCCCCCc
Q psy16571 9 SYLKRLEITGASNLTRVRK--GAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFT--SFSESMLAWPEL 84 (150)
Q Consensus 9 ~~L~~L~l~~n~~l~~i~~--~~~~~l~~L~~l~l~~n~~l~~~~~~~~~~l~~L~~l~l~~n~l~--~lp~~~~~~~~L 84 (150)
..++++|+.+| .+..... ..+..+|.|+.|+++.|. +.......-....+|+.+-|.+..+. ......-.++.+
T Consensus 71 ~~v~elDL~~N-~iSdWseI~~ile~lP~l~~LNls~N~-L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~v 148 (418)
T KOG2982|consen 71 TDVKELDLTGN-LISDWSEIGAILEQLPALTTLNLSCNS-LSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKV 148 (418)
T ss_pred hhhhhhhcccc-hhccHHHHHHHHhcCccceEeeccCCc-CCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhh
Confidence 34566777777 6654321 345667777778887775 65543321124566777777666554 222233447778
Q ss_pred cEEEccCC
Q psy16571 85 RTIDIAEN 92 (150)
Q Consensus 85 ~~L~l~~N 92 (150)
++|.++.|
T Consensus 149 telHmS~N 156 (418)
T KOG2982|consen 149 TELHMSDN 156 (418)
T ss_pred hhhhhccc
Confidence 88888888
No 63
>KOG3665|consensus
Probab=96.24 E-value=0.0027 Score=51.23 Aligned_cols=85 Identities=21% Similarity=0.343 Sum_probs=44.6
Q ss_pred cCccccceeccCCCcCcccccCcccCCCCCCCEEeCCCCCCCCccc-hhhcCCCCCCCeEecCCCCccccCcC-------
Q psy16571 6 KGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIE-EDALVGLPNLYHLNLKENAFTSFSES------- 77 (150)
Q Consensus 6 ~~l~~L~~L~l~~n~~l~~i~~~~~~~l~~L~~l~l~~n~~l~~~~-~~~~~~l~~L~~l~l~~n~l~~lp~~------- 77 (150)
.++++|..||+++. +++.+ ...+.+.+|+.|.+.+=. +..-. -..+-.+++|+.||+|......-+..
T Consensus 170 ~sFpNL~sLDIS~T-nI~nl--~GIS~LknLq~L~mrnLe-~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec 245 (699)
T KOG3665|consen 170 ASFPNLRSLDISGT-NISNL--SGISRLKNLQVLSMRNLE-FESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLEC 245 (699)
T ss_pred hccCccceeecCCC-CccCc--HHHhccccHHHHhccCCC-CCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHh
Confidence 45566667777776 66665 235556666666665432 33211 11223466777777765544332210
Q ss_pred cCCCCCccEEEccCCCc
Q psy16571 78 MLAWPELRTIDIAENPI 94 (150)
Q Consensus 78 ~~~~~~L~~L~l~~N~~ 94 (150)
-..+++|+.|+.+++.+
T Consensus 246 ~~~LpeLrfLDcSgTdi 262 (699)
T KOG3665|consen 246 GMVLPELRFLDCSGTDI 262 (699)
T ss_pred cccCccccEEecCCcch
Confidence 01156666666665544
No 64
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=96.20 E-value=0.003 Score=28.24 Aligned_cols=21 Identities=33% Similarity=0.441 Sum_probs=11.3
Q ss_pred CCCCEEeCCCCCCCCccchhhc
Q psy16571 34 LNLETLTLNKNPKLKIIEEDAL 55 (150)
Q Consensus 34 ~~L~~l~l~~n~~l~~~~~~~~ 55 (150)
++|+.|++++|. ++.+++..|
T Consensus 2 ~~L~~L~L~~N~-l~~lp~~~f 22 (26)
T smart00370 2 PNLRELDLSNNQ-LSSLPPGAF 22 (26)
T ss_pred CCCCEEECCCCc-CCcCCHHHc
Confidence 345555555553 555555544
No 65
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=96.20 E-value=0.003 Score=28.24 Aligned_cols=21 Identities=33% Similarity=0.441 Sum_probs=11.3
Q ss_pred CCCCEEeCCCCCCCCccchhhc
Q psy16571 34 LNLETLTLNKNPKLKIIEEDAL 55 (150)
Q Consensus 34 ~~L~~l~l~~n~~l~~~~~~~~ 55 (150)
++|+.|++++|. ++.+++..|
T Consensus 2 ~~L~~L~L~~N~-l~~lp~~~f 22 (26)
T smart00369 2 PNLRELDLSNNQ-LSSLPPGAF 22 (26)
T ss_pred CCCCEEECCCCc-CCcCCHHHc
Confidence 345555555553 555555544
No 66
>KOG2123|consensus
Probab=95.86 E-value=0.00037 Score=49.80 Aligned_cols=63 Identities=25% Similarity=0.378 Sum_probs=54.8
Q ss_pred cCccccceeccCCCcCcccccCcccCCCCCCCEEeCCCCCCCCccch-hhcCCCCCCCeEecCCCCcc
Q psy16571 6 KGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEE-DALVGLPNLYHLNLKENAFT 72 (150)
Q Consensus 6 ~~l~~L~~L~l~~n~~l~~i~~~~~~~l~~L~~l~l~~n~~l~~~~~-~~~~~l~~L~~l~l~~n~l~ 72 (150)
..|+.|+.|.|+=| .++.+.+ |..+++|+.|+|..|. |..+.. ..+.++++|+.|.|..|.-.
T Consensus 38 ~kMp~lEVLsLSvN-kIssL~p--l~rCtrLkElYLRkN~-I~sldEL~YLknlpsLr~LWL~ENPCc 101 (388)
T KOG2123|consen 38 EKMPLLEVLSLSVN-KISSLAP--LQRCTRLKELYLRKNC-IESLDELEYLKNLPSLRTLWLDENPCC 101 (388)
T ss_pred HhcccceeEEeecc-ccccchh--HHHHHHHHHHHHHhcc-cccHHHHHHHhcCchhhhHhhccCCcc
Confidence 46788999999999 9999976 7889999999999996 988875 45688999999999999765
No 67
>KOG2739|consensus
Probab=95.11 E-value=0.015 Score=40.98 Aligned_cols=66 Identities=21% Similarity=0.294 Sum_probs=48.2
Q ss_pred ccCCCCCCCEEeCCCCCCCCccchhhcCCCCCCCeEecCCC--Ccc-ccCcCcCCCCCccEEEccCCCcccc
Q psy16571 29 AFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKEN--AFT-SFSESMLAWPELRTIDIAENPIECG 97 (150)
Q Consensus 29 ~~~~l~~L~~l~l~~n~~l~~~~~~~~~~l~~L~~l~l~~n--~l~-~lp~~~~~~~~L~~L~l~~N~~~c~ 97 (150)
.+..+..|+.+.+.+.. ++.+. .|..+++|+.|.++.| ++. .++.-+-.+++|+++.+++|.++--
T Consensus 38 l~d~~~~le~ls~~n~g-ltt~~--~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~l 106 (260)
T KOG2739|consen 38 LTDEFVELELLSVINVG-LTTLT--NFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDL 106 (260)
T ss_pred ccccccchhhhhhhccc-eeecc--cCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccc
Confidence 34455667777776653 65554 3567899999999999 555 5655555579999999999998753
No 68
>PRK15386 type III secretion protein GogB; Provisional
Probab=94.69 E-value=0.077 Score=40.35 Aligned_cols=63 Identities=16% Similarity=0.207 Sum_probs=43.6
Q ss_pred CccccceeccCCCcCcccccCcccCCCCCCCEEeCCCCCCCCccchhhcCCCCCCCeEecCCC-CccccCcC
Q psy16571 7 GLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKEN-AFTSFSES 77 (150)
Q Consensus 7 ~l~~L~~L~l~~n~~l~~i~~~~~~~l~~L~~l~l~~n~~l~~~~~~~~~~l~~L~~l~l~~n-~l~~lp~~ 77 (150)
.+.++..|++++| .++.+|. + ..+|+.|.++++..+..++.. + ..+|+.|.+++| .+..+|..
T Consensus 50 ~~~~l~~L~Is~c-~L~sLP~--L--P~sLtsL~Lsnc~nLtsLP~~-L--P~nLe~L~Ls~Cs~L~sLP~s 113 (426)
T PRK15386 50 EARASGRLYIKDC-DIESLPV--L--PNELTEITIENCNNLTTLPGS-I--PEGLEKLTVCHCPEISGLPES 113 (426)
T ss_pred HhcCCCEEEeCCC-CCcccCC--C--CCCCcEEEccCCCCcccCCch-h--hhhhhheEccCcccccccccc
Confidence 3567889999998 8888872 2 246899999875446655532 2 357788888877 66666654
No 69
>KOG1909|consensus
Probab=94.28 E-value=0.015 Score=42.77 Aligned_cols=15 Identities=27% Similarity=0.636 Sum_probs=7.8
Q ss_pred CCCccEEEccCCCcc
Q psy16571 81 WPELRTIDIAENPIE 95 (150)
Q Consensus 81 ~~~L~~L~l~~N~~~ 95 (150)
+++|+.|+|.+|-|.
T Consensus 212 ~~~LevLdl~DNtft 226 (382)
T KOG1909|consen 212 CPHLEVLDLRDNTFT 226 (382)
T ss_pred CCcceeeecccchhh
Confidence 455555555555443
No 70
>KOG1909|consensus
Probab=93.53 E-value=0.039 Score=40.69 Aligned_cols=83 Identities=25% Similarity=0.403 Sum_probs=44.2
Q ss_pred cccceeccCCCcCccccc----CcccCCCCCCCEEeCCCCCCCCcc----chhhcCCCCCCCeEecCCCCccccC-----
Q psy16571 9 SYLKRLEITGASNLTRVR----KGAFADNLNLETLTLNKNPKLKII----EEDALVGLPNLYHLNLKENAFTSFS----- 75 (150)
Q Consensus 9 ~~L~~L~l~~n~~l~~i~----~~~~~~l~~L~~l~l~~n~~l~~~----~~~~~~~l~~L~~l~l~~n~l~~lp----- 75 (150)
+.|+.+...+| ++..-+ ...|...+.|+.+.++.|. |..- ...+|..+++|+.|+|..|-++.--
T Consensus 157 ~~Lrv~i~~rN-rlen~ga~~~A~~~~~~~~leevr~~qN~-I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~La 234 (382)
T KOG1909|consen 157 PKLRVFICGRN-RLENGGATALAEAFQSHPTLEEVRLSQNG-IRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALA 234 (382)
T ss_pred cceEEEEeecc-ccccccHHHHHHHHHhccccceEEEeccc-ccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHH
Confidence 45666666666 554332 1234555666777766664 5331 1234556677777777777665321
Q ss_pred cCcCCCCCccEEEccCCC
Q psy16571 76 ESMLAWPELRTIDIAENP 93 (150)
Q Consensus 76 ~~~~~~~~L~~L~l~~N~ 93 (150)
..+..+++|+++++++..
T Consensus 235 kaL~s~~~L~El~l~dcl 252 (382)
T KOG1909|consen 235 KALSSWPHLRELNLGDCL 252 (382)
T ss_pred HHhcccchheeecccccc
Confidence 122235566666654433
No 71
>PRK15386 type III secretion protein GogB; Provisional
Probab=93.45 E-value=0.14 Score=39.04 Aligned_cols=58 Identities=24% Similarity=0.363 Sum_probs=35.9
Q ss_pred ccceeccCCCcCcccccCcccCCCCCCCEEeCCCCCCCCccchhhcCCCCCCCeEecCCCC---ccccCcC
Q psy16571 10 YLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENA---FTSFSES 77 (150)
Q Consensus 10 ~L~~L~l~~n~~l~~i~~~~~~~l~~L~~l~l~~n~~l~~~~~~~~~~l~~L~~l~l~~n~---l~~lp~~ 77 (150)
+|+.|.++++..++.++. .+ ..+|+.|.+++|..+..++. +|+.|++.++. +..+|..
T Consensus 73 sLtsL~Lsnc~nLtsLP~-~L--P~nLe~L~Ls~Cs~L~sLP~-------sLe~L~L~~n~~~~L~~LPss 133 (426)
T PRK15386 73 ELTEITIENCNNLTTLPG-SI--PEGLEKLTVCHCPEISGLPE-------SVRSLEIKGSATDSIKNVPNG 133 (426)
T ss_pred CCcEEEccCCCCcccCCc-hh--hhhhhheEccCccccccccc-------ccceEEeCCCCCcccccCcch
Confidence 588899988657766664 23 25788999988743655443 35555565554 3445543
No 72
>KOG0473|consensus
Probab=92.94 E-value=0.0014 Score=45.88 Aligned_cols=84 Identities=17% Similarity=0.189 Sum_probs=67.7
Q ss_pred ccccceeccCCCcCcccccCcccCCCCCCCEEeCCCCCCCCccchhhcCCCCCCCeEecCCCCccccCcCcCCCCCccEE
Q psy16571 8 LSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESMLAWPELRTI 87 (150)
Q Consensus 8 l~~L~~L~l~~n~~l~~i~~~~~~~l~~L~~l~l~~n~~l~~~~~~~~~~l~~L~~l~l~~n~l~~lp~~~~~~~~L~~L 87 (150)
......||++.| .+..+.. .|.-++.|..++++.|. +...+.+ +.....+..+++..|.....|.+....+.++.+
T Consensus 41 ~kr~tvld~~s~-r~vn~~~-n~s~~t~~~rl~~sknq-~~~~~~d-~~q~~e~~~~~~~~n~~~~~p~s~~k~~~~k~~ 116 (326)
T KOG0473|consen 41 FKRVTVLDLSSN-RLVNLGK-NFSILTRLVRLDLSKNQ-IKFLPKD-AKQQRETVNAASHKNNHSQQPKSQKKEPHPKKN 116 (326)
T ss_pred cceeeeehhhhh-HHHhhcc-chHHHHHHHHHhccHhh-HhhChhh-HHHHHHHHHHHhhccchhhCCccccccCCcchh
Confidence 345667888888 7777765 46778888889999884 8887765 466777888899999999999988889999999
Q ss_pred EccCCCcc
Q psy16571 88 DIAENPIE 95 (150)
Q Consensus 88 ~l~~N~~~ 95 (150)
++.+|+|.
T Consensus 117 e~k~~~~~ 124 (326)
T KOG0473|consen 117 EQKKTEFF 124 (326)
T ss_pred hhccCcch
Confidence 99999864
No 73
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=92.62 E-value=0.082 Score=23.67 Aligned_cols=18 Identities=44% Similarity=0.698 Sum_probs=14.1
Q ss_pred CCCCeEecCCCCccccCc
Q psy16571 59 PNLYHLNLKENAFTSFSE 76 (150)
Q Consensus 59 ~~L~~l~l~~n~l~~lp~ 76 (150)
++|+.|++++|+++++|.
T Consensus 2 ~~L~~L~vs~N~Lt~LPe 19 (26)
T smart00364 2 PSLKELNVSNNQLTSLPE 19 (26)
T ss_pred cccceeecCCCccccCcc
Confidence 457788888888888876
No 74
>KOG2982|consensus
Probab=92.10 E-value=0.12 Score=37.76 Aligned_cols=83 Identities=24% Similarity=0.267 Sum_probs=54.7
Q ss_pred eeccCCCcCcccccC-ccc-CCCCCCCEEeCCCCCCCCccch--hhcCCCCCCCeEecCCCCccccCcCc-CCCCCccEE
Q psy16571 13 RLEITGASNLTRVRK-GAF-ADNLNLETLTLNKNPKLKIIEE--DALVGLPNLYHLNLKENAFTSFSESM-LAWPELRTI 87 (150)
Q Consensus 13 ~L~l~~n~~l~~i~~-~~~-~~l~~L~~l~l~~n~~l~~~~~--~~~~~l~~L~~l~l~~n~l~~lp~~~-~~~~~L~~L 87 (150)
.+.+.++ .+..... ..| ...+.++.+++.+|. |+.... ..+.++|+|++|+|+.|.+..--... ....+|+.|
T Consensus 49 llvln~~-~id~~gd~~~~~~~~~~v~elDL~~N~-iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~l 126 (418)
T KOG2982|consen 49 LLVLNGS-IIDNEGDVMLFGSSVTDVKELDLTGNL-ISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVL 126 (418)
T ss_pred hheecCC-CCCcchhHHHHHHHhhhhhhhhcccch-hccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEE
Confidence 3444454 5554432 112 235678899999995 875432 44678999999999999987433333 456788999
Q ss_pred EccCCC--cccc
Q psy16571 88 DIAENP--IECG 97 (150)
Q Consensus 88 ~l~~N~--~~c~ 97 (150)
-+.|.. |.|.
T Consensus 127 VLNgT~L~w~~~ 138 (418)
T KOG2982|consen 127 VLNGTGLSWTQS 138 (418)
T ss_pred EEcCCCCChhhh
Confidence 888765 4554
No 75
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=90.01 E-value=0.34 Score=21.67 Aligned_cols=16 Identities=31% Similarity=0.484 Sum_probs=9.0
Q ss_pred CCCCeEecCCCCcccc
Q psy16571 59 PNLYHLNLKENAFTSF 74 (150)
Q Consensus 59 ~~L~~l~l~~n~l~~l 74 (150)
.+|+.|+++.|+|+.+
T Consensus 2 ~~L~~L~L~~NkI~~I 17 (26)
T smart00365 2 TNLEELDLSQNKIKKI 17 (26)
T ss_pred CccCEEECCCCcccee
Confidence 3455666666665544
No 76
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=88.60 E-value=0.47 Score=34.41 Aligned_cols=67 Identities=16% Similarity=0.204 Sum_probs=41.8
Q ss_pred cccCccccceeccCCCcCcccccC----cccCCCCCCCEEeCCCCCCCCccchhhc-------------CCCCCCCeEec
Q psy16571 4 EVKGLSYLKRLEITGASNLTRVRK----GAFADNLNLETLTLNKNPKLKIIEEDAL-------------VGLPNLYHLNL 66 (150)
Q Consensus 4 ~f~~l~~L~~L~l~~n~~l~~i~~----~~~~~l~~L~~l~l~~n~~l~~~~~~~~-------------~~l~~L~~l~l 66 (150)
++.+++.|+.+++|.| .+..-.+ ..++.-..|.+|.+++|. +..+...-+ ..-|.|+.+..
T Consensus 87 aLlkcp~l~~v~LSDN-Afg~~~~e~L~d~is~~t~l~HL~l~NnG-lGp~aG~rigkal~~la~nKKaa~kp~Le~vic 164 (388)
T COG5238 87 ALLKCPRLQKVDLSDN-AFGSEFPEELGDLISSSTDLVHLKLNNNG-LGPIAGGRIGKALFHLAYNKKAADKPKLEVVIC 164 (388)
T ss_pred HHhcCCcceeeecccc-ccCcccchHHHHHHhcCCCceeEEeecCC-CCccchhHHHHHHHHHHHHhhhccCCCceEEEe
Confidence 3456788889999988 6643221 234566778888998884 766543321 13356666666
Q ss_pred CCCCcc
Q psy16571 67 KENAFT 72 (150)
Q Consensus 67 ~~n~l~ 72 (150)
..|++-
T Consensus 165 grNRle 170 (388)
T COG5238 165 GRNRLE 170 (388)
T ss_pred ccchhc
Confidence 666553
No 77
>KOG3763|consensus
Probab=87.12 E-value=0.43 Score=37.49 Aligned_cols=64 Identities=25% Similarity=0.247 Sum_probs=44.0
Q ss_pred cCCCCCCCEEeCCCCCCCCccchh--hcCCCCCCCeEecCCC--CccccCc-CcCCCCCccEEEccCCCc
Q psy16571 30 FADNLNLETLTLNKNPKLKIIEED--ALVGLPNLYHLNLKEN--AFTSFSE-SMLAWPELRTIDIAENPI 94 (150)
Q Consensus 30 ~~~l~~L~~l~l~~n~~l~~~~~~--~~~~l~~L~~l~l~~n--~l~~lp~-~~~~~~~L~~L~l~~N~~ 94 (150)
-...+.+..+.+++|+ +..+..- .-...|+|..|+|++| .+..-++ .-.....|++|-+.|||+
T Consensus 214 ~~n~p~i~sl~lsnNr-L~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPl 282 (585)
T KOG3763|consen 214 EENFPEILSLSLSNNR-LYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPL 282 (585)
T ss_pred hcCCcceeeeecccch-hhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCcc
Confidence 3456778888999996 7766531 1134588999999999 4443222 223356788999999998
No 78
>KOG3864|consensus
Probab=86.39 E-value=0.097 Score=35.90 Aligned_cols=67 Identities=16% Similarity=0.265 Sum_probs=29.7
Q ss_pred CCEEeCCCCCCCCccchhhcCCCCCCCeEecCCCC-c-----cccCcCcCCCCCccEEEccCCCcccccChHHHHHH
Q psy16571 36 LETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENA-F-----TSFSESMLAWPELRTIDIAENPIECGCNILWLREM 106 (150)
Q Consensus 36 L~~l~l~~n~~l~~~~~~~~~~l~~L~~l~l~~n~-l-----~~lp~~~~~~~~L~~L~l~~N~~~c~c~~~~l~~~ 106 (150)
++.++.++.. |..+.-..+.+++.++.|.+.+.. + ..+-. -.++|+.|++++++---+-.+.|+..+
T Consensus 103 IeaVDAsds~-I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~---~~~~L~~L~lsgC~rIT~~GL~~L~~l 175 (221)
T KOG3864|consen 103 IEAVDASDSS-IMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGG---LAPSLQDLDLSGCPRITDGGLACLLKL 175 (221)
T ss_pred EEEEecCCch-HHHHHHHHHhccchhhhheeccccchhhHHHHHhcc---cccchheeeccCCCeechhHHHHHHHh
Confidence 4455555443 444443444444555544444332 1 11111 134566666665554444444554433
No 79
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=86.33 E-value=0.5 Score=20.26 Aligned_cols=12 Identities=42% Similarity=0.573 Sum_probs=4.5
Q ss_pred CCCeEecCCCCc
Q psy16571 60 NLYHLNLKENAF 71 (150)
Q Consensus 60 ~L~~l~l~~n~l 71 (150)
+|+.|+|++|.|
T Consensus 3 ~L~~L~l~~n~i 14 (24)
T PF13516_consen 3 NLETLDLSNNQI 14 (24)
T ss_dssp T-SEEE-TSSBE
T ss_pred CCCEEEccCCcC
Confidence 344444444444
No 80
>KOG3864|consensus
Probab=85.67 E-value=0.15 Score=35.06 Aligned_cols=84 Identities=15% Similarity=0.184 Sum_probs=53.9
Q ss_pred ccceeccCCCcCcccccCcccCCCCCCCEEeCCCCCCCCccchhhc-CCCCCCCeEecCCC-CccccC-cCcCCCCCccE
Q psy16571 10 YLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDAL-VGLPNLYHLNLKEN-AFTSFS-ESMLAWPELRT 86 (150)
Q Consensus 10 ~L~~L~l~~n~~l~~i~~~~~~~l~~L~~l~l~~n~~l~~~~~~~~-~~l~~L~~l~l~~n-~l~~lp-~~~~~~~~L~~ 86 (150)
.++.++-++. .+....-..+..++.++.+.+.++..+...--.-+ .-.++|+.|+|++| +|++.- ..+..+++|+.
T Consensus 102 ~IeaVDAsds-~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~ 180 (221)
T KOG3864|consen 102 KIEAVDASDS-SIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRR 180 (221)
T ss_pred eEEEEecCCc-hHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHH
Confidence 4667888887 88877766788888888888876652221111111 13488999999977 666432 23445778887
Q ss_pred EEccCCCc
Q psy16571 87 IDIAENPI 94 (150)
Q Consensus 87 L~l~~N~~ 94 (150)
|.+.+=+.
T Consensus 181 L~l~~l~~ 188 (221)
T KOG3864|consen 181 LHLYDLPY 188 (221)
T ss_pred HHhcCchh
Confidence 77766544
No 81
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=79.40 E-value=1.8 Score=19.42 Aligned_cols=11 Identities=36% Similarity=0.815 Sum_probs=4.9
Q ss_pred ccEEEccCCCc
Q psy16571 84 LRTIDIAENPI 94 (150)
Q Consensus 84 L~~L~l~~N~~ 94 (150)
|+.|+|++|.+
T Consensus 4 L~~LdL~~N~i 14 (28)
T smart00368 4 LRELDLSNNKL 14 (28)
T ss_pred cCEEECCCCCC
Confidence 34444444444
No 82
>KOG2120|consensus
Probab=78.59 E-value=0.12 Score=37.77 Aligned_cols=63 Identities=27% Similarity=0.184 Sum_probs=34.1
Q ss_pred CccccceeccCCCcCcccccCcccCCCCCCCEEeCCCCCCCCccchh-hcCCCCCCCeEecCCCC
Q psy16571 7 GLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEED-ALVGLPNLYHLNLKENA 70 (150)
Q Consensus 7 ~l~~L~~L~l~~n~~l~~i~~~~~~~l~~L~~l~l~~n~~l~~~~~~-~~~~l~~L~~l~l~~n~ 70 (150)
.+.+|+.|.+.++ .+..-....+..-.+|+.+++++...++.-... .|..+..|+.|+|+.+.
T Consensus 208 ~C~kLk~lSlEg~-~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~ 271 (419)
T KOG2120|consen 208 QCSKLKNLSLEGL-RLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCF 271 (419)
T ss_pred HHHhhhhcccccc-ccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhh
Confidence 3455666667766 655444444555667777777765544432221 23345555555555443
No 83
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=77.20 E-value=2 Score=40.08 Aligned_cols=30 Identities=27% Similarity=0.544 Sum_probs=27.4
Q ss_pred ccCCCcCcccccCcccCCCCCCCEEeCCCCC
Q psy16571 15 EITGASNLTRVRKGAFADNLNLETLTLNKNP 45 (150)
Q Consensus 15 ~l~~n~~l~~i~~~~~~~l~~L~~l~l~~n~ 45 (150)
||++| .|+.++.+.|..+++|+.|+|++|.
T Consensus 1 DLSnN-~LstLp~g~F~~L~sL~~LdLsgNP 30 (2740)
T TIGR00864 1 DISNN-KISTIEEGICANLCNLSEIDLSGNP 30 (2740)
T ss_pred CCCCC-cCCccChHHhccCCCceEEEeeCCc
Confidence 57888 9999999999999999999999997
No 84
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=75.29 E-value=5.7 Score=29.04 Aligned_cols=67 Identities=21% Similarity=0.290 Sum_probs=35.7
Q ss_pred CCCCCCCEEeCCCCCCCCccch----hhcCCCCCCCeEecCCCCccccCcC--------------cCCCCCccEEEccCC
Q psy16571 31 ADNLNLETLTLNKNPKLKIIEE----DALVGLPNLYHLNLKENAFTSFSES--------------MLAWPELRTIDIAEN 92 (150)
Q Consensus 31 ~~l~~L~~l~l~~n~~l~~~~~----~~~~~l~~L~~l~l~~n~l~~lp~~--------------~~~~~~L~~L~l~~N 92 (150)
.++++|+.+++|.|. ++.-.+ ..++....|.+|.+++|++..+-.. +.+-+.|+.+....|
T Consensus 89 lkcp~l~~v~LSDNA-fg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrN 167 (388)
T COG5238 89 LKCPRLQKVDLSDNA-FGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRN 167 (388)
T ss_pred hcCCcceeeeccccc-cCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccc
Confidence 356667777777764 543222 1223445666677777666543221 112355666666666
Q ss_pred Cccccc
Q psy16571 93 PIECGC 98 (150)
Q Consensus 93 ~~~c~c 98 (150)
.+.-..
T Consensus 168 Rlengs 173 (388)
T COG5238 168 RLENGS 173 (388)
T ss_pred hhccCc
Confidence 665433
No 85
>KOG3763|consensus
Probab=71.29 E-value=2.3 Score=33.60 Aligned_cols=64 Identities=22% Similarity=0.203 Sum_probs=41.6
Q ss_pred CccccceeccCCCcCcccccC--cccCCCCCCCEEeCCCCCC-CCccch-hhcCCCCCCCeEecCCCCcc
Q psy16571 7 GLSYLKRLEITGASNLTRVRK--GAFADNLNLETLTLNKNPK-LKIIEE-DALVGLPNLYHLNLKENAFT 72 (150)
Q Consensus 7 ~l~~L~~L~l~~n~~l~~i~~--~~~~~l~~L~~l~l~~n~~-l~~~~~-~~~~~l~~L~~l~l~~n~l~ 72 (150)
+.+.+..+.+++| ++..+.. ..-...|.|+.|+|++|.. +..... ..++ ...|+.|-+.+|.+.
T Consensus 216 n~p~i~sl~lsnN-rL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k-~l~Leel~l~GNPlc 283 (585)
T KOG3763|consen 216 NFPEILSLSLSNN-RLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLK-GLPLEELVLEGNPLC 283 (585)
T ss_pred CCcceeeeecccc-hhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhc-CCCHHHeeecCCccc
Confidence 4456778889998 8877653 1223467899999999920 222111 1223 345788999999986
No 86
>KOG2120|consensus
Probab=69.92 E-value=1.7 Score=32.01 Aligned_cols=79 Identities=22% Similarity=0.222 Sum_probs=48.1
Q ss_pred ccceeccCCCcC-c--ccccCcccCCCCCCCEEeCCCCCCCCccchhhcCCCCCCCeEecCCCCccccCc----CcCCCC
Q psy16571 10 YLKRLEITGASN-L--TRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSE----SMLAWP 82 (150)
Q Consensus 10 ~L~~L~l~~n~~-l--~~i~~~~~~~l~~L~~l~l~~n~~l~~~~~~~~~~l~~L~~l~l~~n~l~~lp~----~~~~~~ 82 (150)
+|..|+++|... + ..+. ......++|..||++.+..++.--...|-.++.|++++++.+ -.+++ .+...+
T Consensus 287 ~l~~LNlsG~rrnl~~sh~~-tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRC--Y~i~p~~~~~l~s~p 363 (419)
T KOG2120|consen 287 TLTQLNLSGYRRNLQKSHLS-TLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRC--YDIIPETLLELNSKP 363 (419)
T ss_pred hhhhhhhhhhHhhhhhhHHH-HHHHhCCceeeeccccccccCchHHHHHHhcchheeeehhhh--cCCChHHeeeeccCc
Confidence 566777777411 1 1111 123467889999999875455422334556788999988655 22322 233478
Q ss_pred CccEEEccC
Q psy16571 83 ELRTIDIAE 91 (150)
Q Consensus 83 ~L~~L~l~~ 91 (150)
+|.+|++.|
T Consensus 364 sl~yLdv~g 372 (419)
T KOG2120|consen 364 SLVYLDVFG 372 (419)
T ss_pred ceEEEEecc
Confidence 899998855
No 87
>KOG0473|consensus
Probab=69.55 E-value=0.039 Score=38.86 Aligned_cols=71 Identities=18% Similarity=0.191 Sum_probs=53.3
Q ss_pred CcccccCcccCCCCCCCEEeCCCCCCCCccchhhcCCCCCCCeEecCCCCccccCcCcCCCCCccEEEccCCC
Q psy16571 21 NLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESMLAWPELRTIDIAENP 93 (150)
Q Consensus 21 ~l~~i~~~~~~~l~~L~~l~l~~n~~l~~~~~~~~~~l~~L~~l~l~~n~l~~lp~~~~~~~~L~~L~l~~N~ 93 (150)
.+..++...+........||++.|+ +..+..+ |+-++.+..++++.|.+..+|..+.++..+..+++..|.
T Consensus 29 ~~s~~~v~ei~~~kr~tvld~~s~r-~vn~~~n-~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~ 99 (326)
T KOG0473|consen 29 ELSEIPVREIASFKRVTVLDLSSNR-LVNLGKN-FSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNN 99 (326)
T ss_pred HhcccchhhhhccceeeeehhhhhH-HHhhccc-hHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccc
Confidence 4455665556667788899999996 7666543 566778888999999999999988877777777776663
No 88
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=63.39 E-value=6.4 Score=17.06 Aligned_cols=10 Identities=30% Similarity=0.793 Sum_probs=4.6
Q ss_pred ccceeccCCC
Q psy16571 10 YLKRLEITGA 19 (150)
Q Consensus 10 ~L~~L~l~~n 19 (150)
+|+.|+++++
T Consensus 3 ~L~~L~l~~C 12 (26)
T smart00367 3 NLRELDLSGC 12 (26)
T ss_pred CCCEeCCCCC
Confidence 3444444444
No 89
>KOG1026|consensus
Probab=51.79 E-value=12 Score=31.06 Aligned_cols=60 Identities=25% Similarity=0.376 Sum_probs=39.0
Q ss_pred cchhhcCCCCCCCeEecCCCC---ccccCcCcCCCCCccEEEccCCCcccccChHHHHHHHhh
Q psy16571 50 IEEDALVGLPNLYHLNLKENA---FTSFSESMLAWPELRTIDIAENPIECGCNILWLREMLVR 109 (150)
Q Consensus 50 ~~~~~~~~l~~L~~l~l~~n~---l~~lp~~~~~~~~L~~L~l~~N~~~c~c~~~~l~~~~~~ 109 (150)
.....+...+.+....+..+. +..++...+.-..+..+.+.+|++.|.|...|+..|...
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~~~~~~~~~~~~~~~~e~ 162 (774)
T KOG1026|consen 100 SQPRAFHYNSRLRRDNLSTNDTGVLGSLSTNGFETLSLTELSLVGNPFTCSCSIRWLDRYRED 162 (774)
T ss_pred ecccceeccccccccccchhhhccccccccccccccccchhhhccCCCCcchhhhHHhhhccc
Confidence 333344445667777777776 444444444445566677778999999999999855443
No 90
>KOG1947|consensus
Probab=46.95 E-value=12 Score=28.48 Aligned_cols=61 Identities=26% Similarity=0.281 Sum_probs=26.9
Q ss_pred CCCCCCEEeCCCCCCCCccchhhcC-CCCCCCeEecCCCC-ccc--cCcCcCCCCCccEEEccCC
Q psy16571 32 DNLNLETLTLNKNPKLKIIEEDALV-GLPNLYHLNLKENA-FTS--FSESMLAWPELRTIDIAEN 92 (150)
Q Consensus 32 ~l~~L~~l~l~~n~~l~~~~~~~~~-~l~~L~~l~l~~n~-l~~--lp~~~~~~~~L~~L~l~~N 92 (150)
.+..|+.++++....++...-..+. ..++|+.|.+.+.. ++. +-.....++.|+.|++++.
T Consensus 241 ~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c 305 (482)
T KOG1947|consen 241 ICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGC 305 (482)
T ss_pred hcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecC
Confidence 3455566666554312222211111 24566666654443 321 2112223556677766643
No 91
>KOG4308|consensus
Probab=21.64 E-value=4 Score=31.95 Aligned_cols=88 Identities=25% Similarity=0.343 Sum_probs=49.2
Q ss_pred CccccceeccCCCcCccccc----CcccCCCCC-CCEEeCCCCCCCCccch----hhcCCC-CCCCeEecCCCCcccc--
Q psy16571 7 GLSYLKRLEITGASNLTRVR----KGAFADNLN-LETLTLNKNPKLKIIEE----DALVGL-PNLYHLNLKENAFTSF-- 74 (150)
Q Consensus 7 ~l~~L~~L~l~~n~~l~~i~----~~~~~~l~~-L~~l~l~~n~~l~~~~~----~~~~~l-~~L~~l~l~~n~l~~l-- 74 (150)
...++++|.++++ .++... ..++...++ +..+++..|. +..... ..+..+ ..+++++++.|.|+..
T Consensus 202 ~~~~le~L~L~~~-~~t~~~c~~l~~~l~~~~~~~~el~l~~n~-l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~ 279 (478)
T KOG4308|consen 202 PLSSLETLKLSRC-GVTSSSCALLDEVLASGESLLRELDLASNK-LGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGV 279 (478)
T ss_pred ccccHHHHhhhhc-CcChHHHHHHHHHHhccchhhHHHHHHhcC-cchHHHHHHHHHhcccchhhhhhhhhcCCccccch
Confidence 3456677777776 554321 123334444 5557777774 654311 123333 5667788888877642
Q ss_pred ---CcCcCCCCCccEEEccCCCccc
Q psy16571 75 ---SESMLAWPELRTIDIAENPIEC 96 (150)
Q Consensus 75 ---p~~~~~~~~L~~L~l~~N~~~c 96 (150)
...+..++.++.+.+..|++.-
T Consensus 280 ~~L~~~l~~~~~l~~l~l~~n~l~~ 304 (478)
T KOG4308|consen 280 RDLAEVLVSCRQLEELSLSNNPLTD 304 (478)
T ss_pred HHHHHHHhhhHHHHHhhcccCcccc
Confidence 2233445677777777777654
No 92
>PF11921 DUF3439: Domain of unknown function (DUF3439); InterPro: IPR024592 This uncharacterised C-terminal domain is found in variable lymphocyte receptor proteins. VLR are proteins consisting of leucine-rich repeats (LRR) that are assembled into functional receptors through somatic diversification of the incomplete germ-line VLR gene in lamprey and hagfish []. ; PDB: 3RFJ_A 3G3B_A 2R9U_C 2O6S_A 3A79_B 3RFS_A 2O6R_A 3V47_B 3V44_A 3A7C_A ....
Probab=21.24 E-value=1.5e+02 Score=18.27 Aligned_cols=31 Identities=13% Similarity=0.361 Sum_probs=19.4
Q ss_pred cChHHHHHHHhhcC-----------CCCeeeCCCccccCccccccc
Q psy16571 98 CNILWLREMLVRRN-----------TSAVFCNSPAPLKYKSLISLS 132 (150)
Q Consensus 98 c~~~~l~~~~~~~~-----------~~~~~C~~~~~l~~~~~~~~~ 132 (150)
-++.+|.+|..+.. .+...|+.. |+++..+.
T Consensus 3 ~dIlYLSrWI~qhsgiV~~~~~~v~PDSAKCSGT----ntPVRAVt 44 (122)
T PF11921_consen 3 PDILYLSRWISQHSGIVRDGSGNVDPDSAKCSGT----NTPVRAVT 44 (122)
T ss_dssp GGGHHHHHHHHHTCCCEEEESSSB-TTGSBBTTT-----SBGGG--
T ss_pred CccHHHHHHHHHCCCeEecCCCccCCCccccCCC----CCcceeEe
Confidence 35788999998762 556777653 56666663
No 93
>TIGR02167 Liste_lipo_26 bacterial surface protein 26-residue repeat. This model describes a tandem peptide repeat sequence of 25 or 26 residues, found in predicted surface proteins (often lipoproteins) from Listeria monocytogenes, L. innocua, Enterococcus faecalis, Lactobacillus plantarum, Mycoplasma mycoides, Helicobacter hepaticus, and other species.
Probab=21.07 E-value=72 Score=13.93 Aligned_cols=14 Identities=29% Similarity=0.506 Sum_probs=6.9
Q ss_pred ccCccccceeccCC
Q psy16571 5 VKGLSYLKRLEITG 18 (150)
Q Consensus 5 f~~l~~L~~L~l~~ 18 (150)
|.+...+..|+++.
T Consensus 2 F~~~~~~~~ldls~ 15 (26)
T TIGR02167 2 FSGCSSLTSLDVSN 15 (26)
T ss_pred CCcccccccccccc
Confidence 44445555555544
Done!