Query psy16571
Match_columns 150
No_of_seqs 224 out of 2647
Neff 10.2
Searched_HMMs 29240
Date Fri Aug 16 16:26:39 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16571.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/16571hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2v9t_B SLIT homolog 2 protein 100.0 1.1E-27 3.7E-32 164.5 13.5 141 2-144 73-216 (220)
2 2wfh_A SLIT homolog 2 protein 99.9 3.2E-27 1.1E-31 159.2 13.3 139 2-142 47-188 (193)
3 1w8a_A SLIT protein; signaling 99.9 5.8E-26 2E-30 152.9 13.0 139 4-144 49-190 (192)
4 2v70_A SLIT-2, SLIT homolog 2 99.9 8.6E-26 2.9E-30 155.0 13.6 140 2-143 74-216 (220)
5 4g8a_A TOLL-like receptor 4; l 99.9 2.1E-25 7.2E-30 172.0 13.4 136 2-142 487-629 (635)
6 3zyj_A Leucine-rich repeat-con 99.9 6.5E-24 2.2E-28 158.7 13.0 139 5-145 203-346 (440)
7 3zyi_A Leucine-rich repeat-con 99.9 2.8E-23 9.6E-28 155.7 13.3 139 5-145 214-357 (452)
8 2ifg_A High affinity nerve gro 99.9 8.5E-22 2.9E-26 143.0 13.0 134 2-145 25-163 (347)
9 1ozn_A Reticulon 4 receptor; N 99.9 4.8E-22 1.6E-26 140.8 11.3 134 4-139 148-285 (285)
10 3g39_A Variable lymphocyte rec 99.9 3.2E-21 1.1E-25 127.3 13.2 122 9-136 30-163 (170)
11 1p9a_G Platelet glycoprotein I 99.9 3.2E-21 1.1E-25 137.3 13.7 107 2-110 117-223 (290)
12 2r9u_A Variable lymphocyte rec 99.9 1.6E-20 5.6E-25 124.4 13.4 122 9-136 33-169 (174)
13 2z66_A Variable lymphocyte rec 99.8 1.1E-20 3.7E-25 135.0 12.3 129 2-132 168-303 (306)
14 2o6q_A Variable lymphocyte rec 99.8 4.5E-20 1.5E-24 129.9 14.4 134 2-141 126-269 (270)
15 1ziw_A TOLL-like receptor 3; i 99.8 3.4E-22 1.2E-26 156.0 3.7 136 5-142 532-676 (680)
16 3e6j_A Variable lymphocyte rec 99.8 4.3E-20 1.5E-24 127.3 13.6 125 5-136 84-223 (229)
17 3vq2_A TLR4, TOLL-like recepto 99.8 4.2E-21 1.4E-25 148.1 9.3 134 2-139 466-605 (606)
18 2id5_A Lingo-1, leucine rich r 99.8 4.5E-21 1.5E-25 144.3 8.6 140 3-144 242-388 (477)
19 3m19_A Variable lymphocyte rec 99.8 1.6E-19 5.4E-24 125.8 13.3 107 2-110 100-208 (251)
20 2o6r_A Variable lymphocyte rec 99.8 1.5E-19 5.1E-24 119.8 12.0 124 2-131 45-173 (177)
21 3t6q_A CD180 antigen; protein- 99.8 4.6E-20 1.6E-24 142.3 9.0 127 3-132 470-602 (606)
22 2xot_A Amphoterin-induced prot 99.8 4.1E-19 1.4E-23 129.7 10.8 133 2-140 81-250 (361)
23 3rfe_A Platelet glycoprotein I 99.8 5.9E-19 2E-23 111.7 6.9 102 37-142 11-121 (130)
24 3j0a_A TOLL-like receptor 5; m 99.8 5.4E-19 1.8E-23 141.3 5.9 131 3-141 474-610 (844)
25 3v47_A TOLL-like receptor 5B a 99.8 9.1E-18 3.1E-22 125.4 12.1 117 2-120 316-437 (455)
26 2z7x_B TOLL-like receptor 1, v 99.7 6.7E-17 2.3E-21 122.7 11.4 114 4-120 369-510 (520)
27 2z62_A TOLL-like receptor 4, v 99.7 4.3E-17 1.5E-21 114.7 8.9 115 4-120 119-266 (276)
28 3a79_B TLR6, VLRB.59, TOLL-lik 99.7 2E-16 6.9E-21 121.3 12.1 121 4-131 398-554 (562)
29 2o6s_A Variable lymphocyte rec 99.7 3.7E-16 1.3E-20 105.8 11.9 106 3-110 70-177 (208)
30 3rfs_A Internalin B, repeat mo 99.7 2.3E-15 7.9E-20 105.9 14.4 106 3-110 127-234 (272)
31 2z63_A TOLL-like receptor 4, v 99.7 7.7E-16 2.6E-20 117.7 11.8 117 2-120 438-560 (570)
32 2z80_A TOLL-like receptor 2, v 99.6 1.4E-16 4.8E-21 115.8 6.1 73 55-131 273-350 (353)
33 2z81_A CD282 antigen, TOLL-lik 99.6 3.6E-15 1.2E-19 113.7 11.5 93 32-131 449-546 (549)
34 3e6j_A Variable lymphocyte rec 99.6 4.2E-15 1.4E-19 102.2 9.6 93 2-96 57-149 (229)
35 2v9t_B SLIT homolog 2 protein 99.6 1.4E-14 4.8E-19 99.1 10.1 93 2-96 49-142 (220)
36 2v70_A SLIT-2, SLIT homolog 2 99.6 3.4E-14 1.2E-18 97.2 10.1 93 3-97 51-144 (220)
37 4g8a_A TOLL-like receptor 4; l 99.5 2.1E-14 7.2E-19 110.6 9.9 93 2-96 69-162 (635)
38 3m19_A Variable lymphocyte rec 99.5 9E-14 3.1E-18 96.6 10.1 89 5-95 79-168 (251)
39 2o6s_A Variable lymphocyte rec 99.5 1.1E-13 3.9E-18 93.5 10.1 92 3-96 46-138 (208)
40 1p9a_G Platelet glycoprotein I 99.5 1.6E-13 5.4E-18 97.5 10.2 93 2-96 93-186 (290)
41 3o6n_A APL1; leucine-rich repe 99.5 2.7E-14 9.2E-19 104.9 5.4 114 3-122 266-380 (390)
42 2xot_A Amphoterin-induced prot 99.4 4.5E-13 1.6E-17 97.7 9.6 93 2-96 56-150 (361)
43 2o6q_A Variable lymphocyte rec 99.4 6.9E-13 2.4E-17 93.0 10.1 70 4-75 56-125 (270)
44 3rfs_A Internalin B, repeat mo 99.4 7.9E-13 2.7E-17 92.9 10.1 91 4-96 104-195 (272)
45 2je0_A Acidic leucine-rich nuc 99.4 3.7E-13 1.3E-17 86.4 7.0 90 3-96 36-127 (149)
46 1ozn_A Reticulon 4 receptor; N 99.4 1.2E-12 4.3E-17 92.3 9.7 90 3-94 99-189 (285)
47 3o53_A Protein LRIM1, AGAP0063 99.4 5.8E-13 2E-17 95.5 7.8 93 7-104 167-259 (317)
48 2wfh_A SLIT homolog 2 protein 99.4 1.4E-12 4.7E-17 87.5 8.9 85 9-96 31-116 (193)
49 2ell_A Acidic leucine-rich nuc 99.4 4.7E-13 1.6E-17 87.5 6.4 92 2-97 42-135 (168)
50 2o6r_A Variable lymphocyte rec 99.4 2.2E-12 7.5E-17 85.1 9.4 86 9-96 28-114 (177)
51 2z62_A TOLL-like receptor 4, v 99.4 1.5E-12 5.1E-17 91.5 8.9 91 4-96 71-163 (276)
52 1w8a_A SLIT protein; signaling 99.4 2.5E-12 8.6E-17 86.0 9.6 86 10-97 30-117 (192)
53 1a9n_A U2A', U2A'; complex (nu 99.4 7.2E-13 2.5E-17 87.4 6.7 86 10-99 43-130 (176)
54 3v47_A TOLL-like receptor 5B a 99.4 2.7E-12 9.2E-17 95.8 9.8 93 2-96 292-385 (455)
55 3o6n_A APL1; leucine-rich repe 99.4 4.4E-12 1.5E-16 93.1 10.2 91 3-95 87-178 (390)
56 2xwt_C Thyrotropin receptor; s 99.4 6.1E-13 2.1E-17 91.7 5.1 87 3-92 49-140 (239)
57 3vq2_A TLR4, TOLL-like recepto 99.4 3.7E-12 1.3E-16 98.2 9.9 89 4-94 51-140 (606)
58 3zyi_A Leucine-rich repeat-con 99.4 4.4E-12 1.5E-16 95.0 10.0 73 2-76 92-164 (452)
59 2z80_A TOLL-like receptor 2, v 99.4 3.3E-12 1.1E-16 92.7 9.1 88 3-92 70-159 (353)
60 3oja_A Leucine-rich immune mol 99.4 1.7E-12 5.7E-17 98.3 7.7 92 7-103 167-258 (487)
61 3zyj_A Leucine-rich repeat-con 99.3 5.8E-12 2E-16 94.0 9.9 88 2-91 81-169 (440)
62 2id5_A Lingo-1, leucine rich r 99.3 5.5E-12 1.9E-16 94.8 9.9 90 3-94 50-140 (477)
63 3oja_B Anopheles plasmodium-re 99.3 6.5E-12 2.2E-16 97.1 10.2 92 3-96 93-185 (597)
64 3t6q_A CD180 antigen; protein- 99.3 5.1E-12 1.7E-16 97.4 9.5 92 2-95 50-142 (606)
65 2z63_A TOLL-like receptor 4, v 99.3 6.3E-12 2.2E-16 96.1 9.6 90 3-94 46-136 (570)
66 1a9n_A U2A', U2A'; complex (nu 99.3 1.1E-12 3.8E-17 86.5 4.0 90 4-95 59-153 (176)
67 3oja_B Anopheles plasmodium-re 99.3 4.9E-12 1.7E-16 97.8 8.2 93 3-97 69-162 (597)
68 1dce_A Protein (RAB geranylger 99.3 5.3E-12 1.8E-16 97.2 8.3 90 5-99 459-550 (567)
69 2z81_A CD282 antigen, TOLL-lik 99.3 8.7E-12 3E-16 95.0 9.3 90 2-93 43-134 (549)
70 4ezg_A Putative uncharacterize 99.3 7.6E-12 2.6E-16 83.9 7.9 85 5-93 62-147 (197)
71 2ell_A Acidic leucine-rich nuc 99.3 2.7E-12 9.1E-17 83.9 5.4 91 3-95 65-160 (168)
72 1ogq_A PGIP-2, polygalacturona 99.3 2.9E-12 9.8E-17 91.8 5.7 92 2-95 94-187 (313)
73 2z66_A Variable lymphocyte rec 99.3 1.2E-11 4.1E-16 87.9 8.8 89 5-95 146-236 (306)
74 3rgz_A Protein brassinosteroid 99.3 7E-12 2.4E-16 99.5 8.2 94 2-97 625-719 (768)
75 3g39_A Variable lymphocyte rec 99.3 1.1E-11 3.9E-16 81.3 7.7 71 2-74 47-117 (170)
76 4ezg_A Putative uncharacterize 99.3 9.7E-12 3.3E-16 83.4 7.1 91 3-96 82-173 (197)
77 2r9u_A Variable lymphocyte rec 99.3 1.5E-11 5.1E-16 81.1 7.9 73 2-76 50-122 (174)
78 2xwt_C Thyrotropin receptor; s 99.3 5.7E-12 1.9E-16 86.8 6.0 90 2-95 73-169 (239)
79 1xku_A Decorin; proteoglycan, 99.3 1.9E-11 6.3E-16 87.9 8.9 85 10-96 193-277 (330)
80 3a79_B TLR6, VLRB.59, TOLL-lik 99.3 1.2E-11 4E-16 94.9 8.3 88 3-95 70-159 (562)
81 4b8c_D Glucose-repressible alc 99.3 7.5E-12 2.6E-16 98.9 7.1 90 3-96 241-330 (727)
82 2ft3_A Biglycan; proteoglycan, 99.3 1.7E-11 5.7E-16 88.3 8.1 86 9-96 193-278 (332)
83 1xku_A Decorin; proteoglycan, 99.3 3.4E-11 1.2E-15 86.5 9.5 92 2-96 209-307 (330)
84 1ogq_A PGIP-2, polygalacturona 99.3 5.9E-12 2E-16 90.2 5.4 92 2-97 191-283 (313)
85 2ft3_A Biglycan; proteoglycan, 99.2 3.7E-11 1.3E-15 86.4 9.2 88 3-95 72-160 (332)
86 4b8c_D Glucose-repressible alc 99.2 1.1E-11 3.9E-16 97.9 6.6 90 2-95 217-306 (727)
87 1ziw_A TOLL-like receptor 3; i 99.2 2.5E-11 8.6E-16 94.8 8.5 90 3-94 67-157 (680)
88 4fcg_A Uncharacterized protein 99.2 2.6E-11 9.1E-16 87.4 7.9 88 5-96 179-267 (328)
89 2z7x_B TOLL-like receptor 1, v 99.2 2.5E-11 8.5E-16 92.1 8.2 87 4-95 40-128 (520)
90 3rgz_A Protein brassinosteroid 99.2 2.5E-11 8.6E-16 96.3 8.1 99 2-102 459-558 (768)
91 3j0a_A TOLL-like receptor 5; m 99.2 5E-11 1.7E-15 95.5 9.1 94 2-97 66-163 (844)
92 2je0_A Acidic leucine-rich nuc 99.2 7.1E-11 2.4E-15 75.6 6.6 85 7-96 15-102 (149)
93 3o53_A Protein LRIM1, AGAP0063 99.2 4.1E-11 1.4E-15 85.8 5.9 90 3-96 138-228 (317)
94 1wwl_A Monocyte differentiatio 99.1 6E-11 2E-15 84.8 6.3 89 5-97 197-289 (312)
95 4fmz_A Internalin; leucine ric 99.1 9.5E-11 3.3E-15 84.6 7.0 89 5-99 239-328 (347)
96 3oja_A Leucine-rich immune mol 99.1 5.3E-11 1.8E-15 90.1 5.8 91 2-96 137-228 (487)
97 1h6t_A Internalin B; cell adhe 99.1 1.5E-10 5E-15 82.2 7.4 86 4-96 107-192 (291)
98 4eco_A Uncharacterized protein 99.1 2.1E-10 7.1E-15 89.4 8.7 85 7-96 511-601 (636)
99 1wwl_A Monocyte differentiatio 99.1 9.3E-11 3.2E-15 83.8 6.1 92 2-95 166-266 (312)
100 1h6u_A Internalin H; cell adhe 99.1 3.1E-10 1.1E-14 81.1 8.8 35 7-44 105-139 (308)
101 4glp_A Monocyte differentiatio 99.1 1.1E-10 3.7E-15 83.4 6.3 88 5-96 193-286 (310)
102 1h6u_A Internalin H; cell adhe 99.1 4.2E-10 1.4E-14 80.4 9.1 83 5-94 59-141 (308)
103 1dce_A Protein (RAB geranylger 99.1 2.6E-10 8.9E-15 87.9 8.4 84 2-89 479-567 (567)
104 1xeu_A Internalin C; cellular 99.1 3.6E-10 1.2E-14 79.0 8.4 88 5-97 59-165 (263)
105 4eco_A Uncharacterized protein 99.1 1.4E-10 4.8E-15 90.3 6.8 87 7-95 431-526 (636)
106 4fcg_A Uncharacterized protein 99.1 2.7E-10 9.1E-15 82.1 7.8 92 2-96 199-291 (328)
107 1h6t_A Internalin B; cell adhe 99.1 4.2E-10 1.4E-14 79.8 8.5 84 5-95 86-169 (291)
108 2ifg_A High affinity nerve gro 99.1 3.8E-10 1.3E-14 81.6 8.3 82 12-96 11-94 (347)
109 1xeu_A Internalin C; cellular 99.1 2.7E-10 9.3E-15 79.7 7.2 84 4-95 36-119 (263)
110 4glp_A Monocyte differentiatio 99.1 1.2E-10 4E-15 83.2 4.9 93 2-96 162-265 (310)
111 4ay9_X Follicle-stimulating ho 99.1 2.2E-10 7.6E-15 83.1 6.0 87 9-97 30-119 (350)
112 1m9s_A Internalin B; cell inva 99.0 1E-09 3.6E-14 85.1 8.8 85 5-96 105-189 (605)
113 1m9s_A Internalin B; cell inva 99.0 1.2E-09 4.1E-14 84.7 8.3 87 4-97 126-212 (605)
114 4ecn_A Leucine-rich repeat pro 99.0 9.6E-10 3.3E-14 88.4 6.9 62 30-94 569-631 (876)
115 4fmz_A Internalin; leucine ric 99.0 3.2E-09 1.1E-13 76.5 9.1 82 5-93 62-143 (347)
116 4ecn_A Leucine-rich repeat pro 99.0 1.7E-09 5.9E-14 86.9 8.2 85 7-93 695-787 (876)
117 3bz5_A Internalin-J, INLJ; leu 99.0 3.2E-09 1.1E-13 79.8 9.1 81 5-95 60-140 (457)
118 1o6v_A Internalin A; bacterial 99.0 1.7E-09 5.9E-14 81.2 7.5 85 5-96 64-148 (466)
119 3cvr_A Invasion plasmid antige 98.9 1.5E-09 5.2E-14 83.7 6.9 79 8-96 159-244 (571)
120 3bz5_A Internalin-J, INLJ; leu 98.9 1.8E-09 6.3E-14 81.1 6.9 84 4-96 37-120 (457)
121 1ds9_A Outer arm dynein; leuci 98.9 2.6E-12 8.8E-17 86.3 -8.1 92 4-99 43-157 (198)
122 1o6v_A Internalin A; bacterial 98.9 5.9E-09 2E-13 78.2 8.6 82 8-96 264-345 (466)
123 3sb4_A Hypothetical leucine ri 98.9 4.1E-09 1.4E-13 75.8 7.3 84 8-95 225-310 (329)
124 4ay9_X Follicle-stimulating ho 98.9 2.1E-09 7.1E-14 78.0 5.7 74 2-77 47-122 (350)
125 3sb4_A Hypothetical leucine ri 98.9 7.1E-09 2.4E-13 74.5 8.2 84 2-89 243-328 (329)
126 3g06_A SSPH2 (leucine-rich rep 98.9 5.7E-09 1.9E-13 81.2 8.1 88 9-107 221-308 (622)
127 2ca6_A RAN GTPase-activating p 98.8 1.3E-09 4.5E-14 79.9 3.5 104 4-110 211-332 (386)
128 1ds9_A Outer arm dynein; leuci 98.8 4.2E-12 1.4E-16 85.2 -9.7 88 5-96 14-107 (198)
129 3cvr_A Invasion plasmid antige 98.7 3.9E-08 1.4E-12 75.8 8.9 33 60-95 161-193 (571)
130 3goz_A Leucine-rich repeat-con 98.7 6.1E-09 2.1E-13 75.8 2.7 62 10-73 23-94 (362)
131 2ast_B S-phase kinase-associat 98.7 1E-08 3.4E-13 73.6 3.2 84 7-92 91-178 (336)
132 1jl5_A Outer protein YOPM; leu 98.6 1.4E-07 4.7E-12 70.9 9.0 20 5-25 149-168 (454)
133 1jl5_A Outer protein YOPM; leu 98.6 1.6E-07 5.3E-12 70.5 8.9 78 9-95 131-208 (454)
134 3g06_A SSPH2 (leucine-rich rep 98.6 1.2E-07 4.2E-12 73.8 8.3 57 9-75 61-117 (622)
135 3goz_A Leucine-rich repeat-con 98.6 9.7E-09 3.3E-13 74.7 0.6 90 4-95 45-151 (362)
136 2ast_B S-phase kinase-associat 98.5 1.6E-08 5.4E-13 72.5 0.9 89 4-93 113-206 (336)
137 4fdw_A Leucine rich hypothetic 98.5 4.6E-07 1.6E-11 67.0 8.4 85 4-92 266-355 (401)
138 2ca6_A RAN GTPase-activating p 98.4 7.3E-08 2.5E-12 70.6 2.6 87 6-94 29-134 (386)
139 3rw6_A Nuclear RNA export fact 98.4 1.6E-07 5.3E-12 65.9 3.5 88 6-96 138-234 (267)
140 3rw6_A Nuclear RNA export fact 98.4 6.6E-08 2.3E-12 67.8 1.3 80 6-88 167-257 (267)
141 4fdw_A Leucine rich hypothetic 98.4 1.9E-06 6.4E-11 63.8 8.6 63 2-68 173-235 (401)
142 1z7x_W Ribonuclease inhibitor; 98.3 1.2E-07 4E-12 70.7 0.9 39 58-96 369-412 (461)
143 4gt6_A Cell surface protein; l 98.3 3.5E-06 1.2E-10 61.9 8.5 85 4-93 283-368 (394)
144 3un9_A NLR family member X1; l 98.2 2.7E-07 9.3E-12 67.6 1.8 13 82-94 239-251 (372)
145 4fs7_A Uncharacterized protein 98.2 3.7E-06 1.3E-10 61.8 7.5 85 3-92 291-376 (394)
146 1z7x_W Ribonuclease inhibitor; 98.2 4.1E-07 1.4E-11 67.8 2.1 14 83-96 314-327 (461)
147 4h09_A Hypothetical leucine ri 98.1 1E-05 3.4E-10 59.0 7.3 86 3-92 234-320 (379)
148 3un9_A NLR family member X1; l 98.1 1.2E-06 4.3E-11 64.1 2.1 87 8-96 125-225 (372)
149 4gt6_A Cell surface protein; l 98.1 9.6E-06 3.3E-10 59.5 6.8 87 2-94 304-390 (394)
150 4fs7_A Uncharacterized protein 98.0 1.2E-05 4E-10 59.1 6.6 81 2-87 313-393 (394)
151 4h09_A Hypothetical leucine ri 98.0 3.5E-05 1.2E-09 56.1 8.4 86 3-92 257-343 (379)
152 3rfe_A Platelet glycoprotein I 97.9 3.4E-05 1.2E-09 48.2 6.0 55 12-71 11-67 (130)
153 1io0_A Tropomodulin; LRR prote 97.8 2.7E-06 9.2E-11 56.3 0.3 92 5-97 32-138 (185)
154 3e4g_A ATP synthase subunit S, 97.8 8.3E-06 2.9E-10 53.6 2.6 84 9-94 61-151 (176)
155 3ogk_B Coronatine-insensitive 97.6 5.2E-06 1.8E-10 63.7 -0.6 62 33-95 462-526 (592)
156 1io0_A Tropomodulin; LRR prote 97.6 2.6E-05 8.7E-10 51.5 2.5 91 5-97 61-166 (185)
157 3ogk_B Coronatine-insensitive 97.4 1.8E-05 6E-10 60.7 -0.1 80 8-89 163-250 (592)
158 2p1m_B Transport inhibitor res 97.4 1.5E-05 5.2E-10 61.1 -1.2 85 7-94 430-518 (594)
159 2p1m_B Transport inhibitor res 97.1 9.4E-05 3.2E-09 56.6 0.8 85 8-93 104-195 (594)
160 2ra8_A Uncharacterized protein 97.0 0.0002 6.9E-09 52.3 1.7 61 33-94 251-319 (362)
161 3e4g_A ATP synthase subunit S, 96.9 0.0002 7E-09 47.0 0.8 69 4-72 80-153 (176)
162 2ra8_A Uncharacterized protein 95.9 0.0087 3E-07 43.6 4.3 55 7-66 170-226 (362)
163 2lz0_A Uncharacterized protein 95.7 0.019 6.5E-07 33.9 4.6 50 18-70 5-54 (100)
164 1pgv_A TMD-1, tropomodulin TMD 95.3 0.01 3.4E-07 39.6 2.5 84 8-92 40-136 (197)
165 2lz0_A Uncharacterized protein 94.2 0.11 3.7E-06 30.6 4.9 42 2-45 13-54 (100)
166 1pgv_A TMD-1, tropomodulin TMD 93.7 0.031 1.1E-06 37.2 2.0 88 6-95 67-170 (197)
No 1
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.95 E-value=1.1e-27 Score=164.50 Aligned_cols=141 Identities=27% Similarity=0.476 Sum_probs=119.3
Q ss_pred CccccCccccceeccCCCcCcccccCcccCCCCCCCEEeCCCCCCCCccchhhcCCCCCCCeEecCCCCccccCcC-cCC
Q psy16571 2 EKEVKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSES-MLA 80 (150)
Q Consensus 2 p~~f~~l~~L~~L~l~~n~~l~~i~~~~~~~l~~L~~l~l~~n~~l~~~~~~~~~~l~~L~~l~l~~n~l~~lp~~-~~~ 80 (150)
|.+|.++++|++|++++| .++.+++..|.++++|+.|++++|. +..+++..|..+++|+.|+|++|.++.++.. +..
T Consensus 73 ~~~~~~l~~L~~L~Ls~N-~l~~l~~~~f~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~ 150 (220)
T 2v9t_B 73 PDAFQGLRSLNSLVLYGN-KITELPKSLFEGLFSLQLLLLNANK-INCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSP 150 (220)
T ss_dssp TTTTTTCSSCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTT
T ss_pred HHHhhCCcCCCEEECCCC-cCCccCHhHccCCCCCCEEECCCCC-CCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhC
Confidence 567888888888888888 8888888888888888888888885 8888888888889999999999999988875 445
Q ss_pred CCCccEEEccCCCcccccChHHHHHHHhhcC--CCCeeeCCCccccCccccccccccCCCCCcccc
Q psy16571 81 WPELRTIDIAENPIECGCNILWLREMLVRRN--TSAVFCNSPAPLKYKSLISLSAEDLGSRVRALF 144 (150)
Q Consensus 81 ~~~L~~L~l~~N~~~c~c~~~~l~~~~~~~~--~~~~~C~~~~~l~~~~~~~~~~~~~~C~~~~~~ 144 (150)
+++|+.|++++|+|.|+|++.|+..|+.... ...+.|.+|..++|+.+.+++.+++.|..++..
T Consensus 151 l~~L~~L~L~~N~~~c~c~l~~l~~~l~~~~~~~~~~~C~~P~~l~g~~l~~l~~~~~~c~~~~~~ 216 (220)
T 2v9t_B 151 LRAIQTMHLAQNPFICDCHLKWLADYLHTNPIETSGARCTSPRRLANKRIGQIKSKKFRCSAAAHH 216 (220)
T ss_dssp CTTCCEEECCSSCEECSGGGHHHHHHHHHCCCBCSCCBEEESGGGTTCBGGGSCGGGCCC------
T ss_pred CCCCCEEEeCCCCcCCCCccHHHHHHHHhCCCCccCCCcCCchHHcCCchhhCCHHHCcCcccccc
Confidence 8999999999999999999999999988764 567899999999999999999999999887654
No 2
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.95 E-value=3.2e-27 Score=159.22 Aligned_cols=139 Identities=22% Similarity=0.427 Sum_probs=125.4
Q ss_pred CccccCccccceeccCCCcCcccccCcccCCCCCCCEEeCCCCCCCCccchhhcCCCCCCCeEecCCCCccccCcCcC-C
Q psy16571 2 EKEVKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESML-A 80 (150)
Q Consensus 2 p~~f~~l~~L~~L~l~~n~~l~~i~~~~~~~l~~L~~l~l~~n~~l~~~~~~~~~~l~~L~~l~l~~n~l~~lp~~~~-~ 80 (150)
|..|.++.+|+.|++++| .++.+++.+|.++++|+.|++++|. ++.+++..|..+++|+.|+|++|.++.+|...+ .
T Consensus 47 p~~~~~l~~L~~L~Ls~N-~i~~i~~~~f~~l~~L~~L~Ls~N~-l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~ 124 (193)
T 2wfh_A 47 PKELSNYKHLTLIDLSNN-RISTLSNQSFSNMTQLLTLILSYNR-LRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFND 124 (193)
T ss_dssp CGGGGGCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC-CCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTT
T ss_pred HHHhhcccCCCEEECCCC-cCCEeCHhHccCCCCCCEEECCCCc-cCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhc
Confidence 567889999999999999 9999999999999999999999996 999999999999999999999999999988654 5
Q ss_pred CCCccEEEccCCCcccccChHHHHHHHhhcC--CCCeeeCCCccccCccccccccccCCCCCcc
Q psy16571 81 WPELRTIDIAENPIECGCNILWLREMLVRRN--TSAVFCNSPAPLKYKSLISLSAEDLGSRVRA 142 (150)
Q Consensus 81 ~~~L~~L~l~~N~~~c~c~~~~l~~~~~~~~--~~~~~C~~~~~l~~~~~~~~~~~~~~C~~~~ 142 (150)
+++|+.|++++|+|.|||++.|+..|..... ...+.|++|..++|+.+.+++..++.|....
T Consensus 125 l~~L~~L~L~~N~~~C~c~l~~l~~~~~~~~~~~~~~~C~~P~~l~g~~l~~~~~~~~~~~~~~ 188 (193)
T 2wfh_A 125 LSALSHLAIGANPLYCDCNMQWLSDWVKSEYKEPGIARCAGPGEMADKLLLTTPSKKFTCAAAH 188 (193)
T ss_dssp CTTCCEEECCSSCEECSGGGHHHHHHHHHSSCCCSCCBEEESGGGTTCBTTTSCGGGCCC----
T ss_pred CccccEEEeCCCCeecCCcCHHHHHHHHhccCCCCCcCcCCchHHCCCCcccCChHHeeehhhc
Confidence 8999999999999999999999999998764 4568999999999999999999999887653
No 3
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.94 E-value=5.8e-26 Score=152.85 Aligned_cols=139 Identities=24% Similarity=0.458 Sum_probs=125.1
Q ss_pred cccCccccceeccCCCcCcccccCcccCCCCCCCEEeCCCCCCCCccchhhcCCCCCCCeEecCCCCcccc-CcCcCCCC
Q psy16571 4 EVKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSF-SESMLAWP 82 (150)
Q Consensus 4 ~f~~l~~L~~L~l~~n~~l~~i~~~~~~~l~~L~~l~l~~n~~l~~~~~~~~~~l~~L~~l~l~~n~l~~l-p~~~~~~~ 82 (150)
.|.++++|++|++++| .++.+.+..|..+++|+.|++++|. ++.+++..|..+++|+.|+|++|.++.+ |..+..++
T Consensus 49 ~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~ 126 (192)
T 1w8a_A 49 LFGRLPHLVKLELKRN-QLTGIEPNAFEGASHIQELQLGENK-IKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLN 126 (192)
T ss_dssp SGGGCTTCCEEECCSS-CCCCBCTTTTTTCTTCCEEECCSCC-CCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCT
T ss_pred ccccCCCCCEEECCCC-CCCCcCHhHcCCcccCCEEECCCCc-CCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCC
Confidence 4889999999999999 9999988899999999999999996 9999998899999999999999999977 45566689
Q ss_pred CccEEEccCCCcccccChHHHHHHHhhcC--CCCeeeCCCccccCccccccccccCCCCCcccc
Q psy16571 83 ELRTIDIAENPIECGCNILWLREMLVRRN--TSAVFCNSPAPLKYKSLISLSAEDLGSRVRALF 144 (150)
Q Consensus 83 ~L~~L~l~~N~~~c~c~~~~l~~~~~~~~--~~~~~C~~~~~l~~~~~~~~~~~~~~C~~~~~~ 144 (150)
+|+.|++++|+|.|+|.+.|+..|++... .....|..|..++|+.+.++..+++.|..+...
T Consensus 127 ~L~~L~L~~N~l~c~c~l~~~~~~l~~~~~~~~~~~C~~P~~l~~~~l~~l~~~~~~C~~~~~~ 190 (192)
T 1w8a_A 127 SLTSLNLASNPFNCNCHLAWFAEWLRKKSLNGGAARCGAPSKVRDVQIKDLPHSEFKCSSENSE 190 (192)
T ss_dssp TCCEEECTTCCBCCSGGGHHHHHHHHHHCCSGGGCBBCSSTTTTTSBGGGSCTTTCCCCCC---
T ss_pred CCCEEEeCCCCccCcCcchHHHHHHHHcCCCCCCCCCCCChHHcCCChhhCcHhhcCcCCCCCC
Confidence 99999999999999999999999998764 566899999999999999999999999987653
No 4
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.94 E-value=8.6e-26 Score=155.02 Aligned_cols=140 Identities=25% Similarity=0.433 Sum_probs=119.0
Q ss_pred CccccCccccceeccCCCcCcccccCcccCCCCCCCEEeCCCCCCCCccchhhcCCCCCCCeEecCCCCcccc-CcCcCC
Q psy16571 2 EKEVKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSF-SESMLA 80 (150)
Q Consensus 2 p~~f~~l~~L~~L~l~~n~~l~~i~~~~~~~l~~L~~l~l~~n~~l~~~~~~~~~~l~~L~~l~l~~n~l~~l-p~~~~~ 80 (150)
+.+|.++.+|++|++++| .++.+++..|..+++|+.|++++|. +..+++..|..+++|+.|+|++|.++.+ |..+..
T Consensus 74 ~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~ 151 (220)
T 2v70_A 74 EGAFEGASGVNEILLTSN-RLENVQHKMFKGLESLKTLMLRSNR-ITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDT 151 (220)
T ss_dssp TTTTTTCTTCCEEECCSS-CCCCCCGGGGTTCSSCCEEECTTSC-CCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTT
T ss_pred HHHhCCCCCCCEEECCCC-ccCccCHhHhcCCcCCCEEECCCCc-CCeECHhHcCCCccCCEEECCCCcCCEECHHHhcC
Confidence 346788888888888888 8888888788888888888888885 8888888888889999999999999987 445566
Q ss_pred CCCccEEEccCCCcccccChHHHHHHHhhcC--CCCeeeCCCccccCccccccccccCCCCCccc
Q psy16571 81 WPELRTIDIAENPIECGCNILWLREMLVRRN--TSAVFCNSPAPLKYKSLISLSAEDLGSRVRAL 143 (150)
Q Consensus 81 ~~~L~~L~l~~N~~~c~c~~~~l~~~~~~~~--~~~~~C~~~~~l~~~~~~~~~~~~~~C~~~~~ 143 (150)
+++|+.|++++|+|.|+|.+.|+..|..... .....|..|..++|+++.++...++.|..+..
T Consensus 152 l~~L~~L~L~~N~l~c~c~l~~l~~~~~~~~~~~~~~~C~~P~~l~g~~l~~l~~~~~~~~~~~~ 216 (220)
T 2v70_A 152 LHSLSTLNLLANPFNCNCYLAWLGEWLRKKRIVTGNPRCQKPYFLKEIPIQDVAIQDFTCDDAHH 216 (220)
T ss_dssp CTTCCEEECCSCCEECSGGGHHHHHHHHHSCCBCCCCEEEESGGGTTEEGGGSCGGGCCCCC---
T ss_pred CCCCCEEEecCcCCcCCCchHHHHHHHHhcCccccCCccCCChHHCCCChhhCCHHHcccccccc
Confidence 8999999999999999999999999998764 56789999999999999999999998887543
No 5
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.93 E-value=2.1e-25 Score=171.96 Aligned_cols=136 Identities=16% Similarity=0.284 Sum_probs=120.0
Q ss_pred CccccCccccceeccCCCcCcccccCcccCCCCCCCEEeCCCCCCCCccchhhcCCCCCCCeEecCCCCccccCcCcC-C
Q psy16571 2 EKEVKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESML-A 80 (150)
Q Consensus 2 p~~f~~l~~L~~L~l~~n~~l~~i~~~~~~~l~~L~~l~l~~n~~l~~~~~~~~~~l~~L~~l~l~~n~l~~lp~~~~-~ 80 (150)
|..|..+++|++|++++| .++.+++..|.++++|+.|++++|+ ++.+++..|..+++|+.|+|++|.|+.+++..+ .
T Consensus 487 ~~~~~~l~~L~~L~Ls~N-~L~~l~~~~f~~l~~L~~L~Ls~N~-l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~ 564 (635)
T 4g8a_A 487 PDIFTELRNLTFLDLSQC-QLEQLSPTAFNSLSSLQVLNMSHNN-FFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQH 564 (635)
T ss_dssp CSCCTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECTTSC-CCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTC
T ss_pred chhhhhccccCEEECCCC-ccCCcChHHHcCCCCCCEEECCCCc-CCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHh
Confidence 567899999999999999 9999999999999999999999996 999999999999999999999999998876544 4
Q ss_pred C-CCccEEEccCCCcccccChHHHHHHHhhcC-----CCCeeeCCCccccCccccccccccCCCCCcc
Q psy16571 81 W-PELRTIDIAENPIECGCNILWLREMLVRRN-----TSAVFCNSPAPLKYKSLISLSAEDLGSRVRA 142 (150)
Q Consensus 81 ~-~~L~~L~l~~N~~~c~c~~~~l~~~~~~~~-----~~~~~C~~~~~l~~~~~~~~~~~~~~C~~~~ 142 (150)
+ ++|+.|++++|||.|||++.||.+|++... ..+++|++|..++|+++.++ ++.|...+
T Consensus 565 l~~~L~~L~L~~Np~~C~C~~~~~~~wl~~~~~~~~~~~~~~C~~P~~~~g~~l~~~---~~~C~~~g 629 (635)
T 4g8a_A 565 FPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSDKQGMPVLSL---NITCQMTG 629 (635)
T ss_dssp CCTTCCEEECTTCCBCCSGGGHHHHHHHHHTTTTBSCGGGCBBCSSTTTTTCBGGGC---CCCC----
T ss_pred hhCcCCEEEeeCCCCcccCCcHHHHHHHHhCCCccCCCCCceeCCchHHCCCEeeee---ccCCCCCC
Confidence 5 689999999999999999999999998753 45789999999999999999 46797543
No 6
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.91 E-value=6.5e-24 Score=158.66 Aligned_cols=139 Identities=25% Similarity=0.488 Sum_probs=115.9
Q ss_pred ccCccccceeccCCCcCcccccCcccCCCCCCCEEeCCCCCCCCccchhhcCCCCCCCeEecCCCCccccCcCcC-CCCC
Q psy16571 5 VKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESML-AWPE 83 (150)
Q Consensus 5 f~~l~~L~~L~l~~n~~l~~i~~~~~~~l~~L~~l~l~~n~~l~~~~~~~~~~l~~L~~l~l~~n~l~~lp~~~~-~~~~ 83 (150)
+..+.+|+.|++++| .++.+++..|..+++|+.|++++|. +..+++..|..+++|+.|+|++|.++.+|...+ .+++
T Consensus 203 ~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~ 280 (440)
T 3zyj_A 203 LTPLIKLDELDLSGN-HLSAIRPGSFQGLMHLQKLWMIQSQ-IQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHH 280 (440)
T ss_dssp CTTCSSCCEEECTTS-CCCEECTTTTTTCTTCCEEECTTCC-CCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTT
T ss_pred cCCCcccCEEECCCC-ccCccChhhhccCccCCEEECCCCc-eeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccC
Confidence 455667777788887 8888877888888899999999885 888888888899999999999999999887655 4899
Q ss_pred ccEEEccCCCcccccChHHHHHHHhhcC----CCCeeeCCCccccCccccccccccCCCCCccccc
Q psy16571 84 LRTIDIAENPIECGCNILWLREMLVRRN----TSAVFCNSPAPLKYKSLISLSAEDLGSRVRALFI 145 (150)
Q Consensus 84 L~~L~l~~N~~~c~c~~~~l~~~~~~~~----~~~~~C~~~~~l~~~~~~~~~~~~~~C~~~~~~~ 145 (150)
|+.|++++|+|.|||++.|+..|.+... .....|++|..++|+.+.+++...+.|..|.+..
T Consensus 281 L~~L~L~~Np~~CdC~l~~l~~~~~~~~~~~~~~~~~C~~P~~l~g~~l~~l~~~~~~C~~P~i~~ 346 (440)
T 3zyj_A 281 LERIHLHHNPWNCNCDILWLSWWIKDMAPSNTACCARCNTPPNLKGRYIGELDQNYFTCYAPVIVE 346 (440)
T ss_dssp CCEEECCSSCEECSSTTHHHHHHHHTTSCSSCSCCCBEEESTTTTTCBCC----CCSCCCCCCEEE
T ss_pred CCEEEcCCCCccCCCCchHHHHHHHhccccCCccccCCCChhHhcCccHhHhhhhhccCCCCcccc
Confidence 9999999999999999999999998753 3458999999999999999999999998776543
No 7
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.90 E-value=2.8e-23 Score=155.67 Aligned_cols=139 Identities=25% Similarity=0.469 Sum_probs=119.3
Q ss_pred ccCccccceeccCCCcCcccccCcccCCCCCCCEEeCCCCCCCCccchhhcCCCCCCCeEecCCCCccccCcCcC-CCCC
Q psy16571 5 VKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESML-AWPE 83 (150)
Q Consensus 5 f~~l~~L~~L~l~~n~~l~~i~~~~~~~l~~L~~l~l~~n~~l~~~~~~~~~~l~~L~~l~l~~n~l~~lp~~~~-~~~~ 83 (150)
+..+.+|+.|++++| .++.+++..|..+++|+.|++++|. +..+.+..|..+++|+.|+|++|.++.+|...+ .+++
T Consensus 214 ~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~ 291 (452)
T 3zyi_A 214 LTPLVGLEELEMSGN-HFPEIRPGSFHGLSSLKKLWVMNSQ-VSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRY 291 (452)
T ss_dssp CTTCTTCCEEECTTS-CCSEECGGGGTTCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTT
T ss_pred ccccccccEEECcCC-cCcccCcccccCccCCCEEEeCCCc-CceECHHHhcCCCCCCEEECCCCcCCccChHHhccccC
Confidence 455667777788887 7888877888888999999999885 888888888899999999999999999887655 4899
Q ss_pred ccEEEccCCCcccccChHHHHHHHhhcC----CCCeeeCCCccccCccccccccccCCCCCccccc
Q psy16571 84 LRTIDIAENPIECGCNILWLREMLVRRN----TSAVFCNSPAPLKYKSLISLSAEDLGSRVRALFI 145 (150)
Q Consensus 84 L~~L~l~~N~~~c~c~~~~l~~~~~~~~----~~~~~C~~~~~l~~~~~~~~~~~~~~C~~~~~~~ 145 (150)
|+.|++++|+|.|||++.|+..|++... .....|++|..++|+.+.+++...+.|..|.+..
T Consensus 292 L~~L~L~~Np~~CdC~~~~l~~~l~~~~~~~~~~~~~C~~P~~l~g~~l~~~~~~~~~C~~P~i~~ 357 (452)
T 3zyi_A 292 LVELHLHHNPWNCDCDILWLAWWLREYIPTNSTCCGRCHAPMHMRGRYLVEVDQASFQCSAPFIMD 357 (452)
T ss_dssp CCEEECCSSCEECSTTTHHHHHHHHHHC---CCSSCBEEESTTTTTCBTTSCCGGGCCCCCCCCSB
T ss_pred CCEEEccCCCcCCCCCchHHHHHHHHhCccCCccCcEeCCchHhccchhhccchhhhcccCccccc
Confidence 9999999999999999999999998753 3457999999999999999999999998775543
No 8
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.88 E-value=8.5e-22 Score=142.98 Aligned_cols=134 Identities=25% Similarity=0.386 Sum_probs=114.7
Q ss_pred CccccCccccceeccCC-CcCcccccCcccCCCCCCCEEeCCCCCCCCccchhhcCCCCCCCeEecCCCCccccCcCcCC
Q psy16571 2 EKEVKGLSYLKRLEITG-ASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESMLA 80 (150)
Q Consensus 2 p~~f~~l~~L~~L~l~~-n~~l~~i~~~~~~~l~~L~~l~l~~n~~l~~~~~~~~~~l~~L~~l~l~~n~l~~lp~~~~~ 80 (150)
|. +..+.+|+.|+|++ | .++.+++..|.++++|+.|+|++|. ++.+++..|..+++|+.|+|++|.|+.+|..++.
T Consensus 25 p~-l~~~~~L~~L~l~~~n-~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~ 101 (347)
T 2ifg_A 25 HH-LPGAENLTELYIENQQ-HLQHLELRDLRGLGELRNLTIVKSG-LRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQ 101 (347)
T ss_dssp TT-SCSCSCCSEEECCSCS-SCCEECGGGSCSCCCCSEEECCSSC-CCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTC
T ss_pred CC-CCCCCCeeEEEccCCC-CCCCcChhHhccccCCCEEECCCCc-cceeCHHHhcCCcCCCEEeCCCCccceeCHHHcc
Confidence 45 78888999999996 8 9999999999999999999999996 9999999999999999999999999999998877
Q ss_pred CCCccEEEccCCCcccccChHHHHHHHhhcC----CCCeeeCCCccccCccccccccccCCCCCccccc
Q psy16571 81 WPELRTIDIAENPIECGCNILWLREMLVRRN----TSAVFCNSPAPLKYKSLISLSAEDLGSRVRALFI 145 (150)
Q Consensus 81 ~~~L~~L~l~~N~~~c~c~~~~l~~~~~~~~----~~~~~C~~~~~l~~~~~~~~~~~~~~C~~~~~~~ 145 (150)
...|+.|++.+|+|.|+|.+.||..|..... ...+.|..|..+.. +. ...|..|.+..
T Consensus 102 ~~~L~~l~l~~N~~~c~c~l~~~~~~~~~~~~~l~~~~~~C~~~~~l~~-----l~--~~~c~~P~i~~ 163 (347)
T 2ifg_A 102 GLSLQELVLSGNPLHCSCALRWLQRWEEEGLGGVPEQKLQCHGQGPLAH-----MP--NASCGVPTLKV 163 (347)
T ss_dssp SCCCCEEECCSSCCCCCGGGHHHHHHHHTTCSSCGGGCCCCSSSSCSSC-----CC--CTTCCCCEEEE
T ss_pred cCCceEEEeeCCCccCCCccHHHHHHHHhCcccccccCCCCCCChHHhc-----CC--cccCCCCceec
Confidence 5569999999999999999999999998653 46789998874433 32 24576665543
No 9
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.88 E-value=4.8e-22 Score=140.76 Aligned_cols=134 Identities=25% Similarity=0.384 Sum_probs=107.9
Q ss_pred cccCccccceeccCCCcCcccccCcccCCCCCCCEEeCCCCCCCCccchhhcCCCCCCCeEecCCCCccccCcC-cCCCC
Q psy16571 4 EVKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSES-MLAWP 82 (150)
Q Consensus 4 ~f~~l~~L~~L~l~~n~~l~~i~~~~~~~l~~L~~l~l~~n~~l~~~~~~~~~~l~~L~~l~l~~n~l~~lp~~-~~~~~ 82 (150)
.|.++++|++|++++| .++.+++..|..+++|+.+++++|. +..+.+..|..+++|+.|++++|.++.++.. +..++
T Consensus 148 ~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~ 225 (285)
T 1ozn_A 148 TFRDLGNLTHLFLHGN-RISSVPERAFRGLHSLDRLLLHQNR-VAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLR 225 (285)
T ss_dssp TTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCT
T ss_pred HhccCCCccEEECCCC-cccccCHHHhcCccccCEEECCCCc-ccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCc
Confidence 4666777777777777 7777776667777777777777775 7777666677778888888888888877654 55688
Q ss_pred CccEEEccCCCcccccChHHHHHHHhhcC--CCCeeeCCCccccCccccccccccCC-CC
Q psy16571 83 ELRTIDIAENPIECGCNILWLREMLVRRN--TSAVFCNSPAPLKYKSLISLSAEDLG-SR 139 (150)
Q Consensus 83 ~L~~L~l~~N~~~c~c~~~~l~~~~~~~~--~~~~~C~~~~~l~~~~~~~~~~~~~~-C~ 139 (150)
+|+.|++++|+|.|+|.+.|+..|++... ...+.|..|..++|+.+.++...++. |.
T Consensus 226 ~L~~L~l~~N~~~c~~~~~~~~~~l~~~~~~~~~~~c~~p~~l~g~~l~~l~~~~l~~C~ 285 (285)
T 1ozn_A 226 ALQYLRLNDNPWVCDCRARPLWAWLQKFRGSSSEVPCSLPQRLAGRDLKRLAANDLQGCA 285 (285)
T ss_dssp TCCEEECCSSCEECSGGGHHHHHHHHHCCSEECCCBEEESGGGTTCBGGGSCGGGSCCC-
T ss_pred ccCEEeccCCCccCCCCcHHHHHHHHhcccccCccccCCchHhCCcChhhcCHHHhccCC
Confidence 99999999999999999999999998875 57789999999999999999988885 63
No 10
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.87 E-value=3.2e-21 Score=127.34 Aligned_cols=122 Identities=20% Similarity=0.400 Sum_probs=106.9
Q ss_pred cccceeccCCCcCcccccCcccCCCCCCCEEeCCCCCCCCccchhhcCCCCCCCeEecCCCCccccCcC-cCCCCCccEE
Q psy16571 9 SYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSES-MLAWPELRTI 87 (150)
Q Consensus 9 ~~L~~L~l~~n~~l~~i~~~~~~~l~~L~~l~l~~n~~l~~~~~~~~~~l~~L~~l~l~~n~l~~lp~~-~~~~~~L~~L 87 (150)
..|+.|++++| .++.+++..|..+++|+.|++++|. ++.+++..|..+++|+.|+|++|.|+.+|.. +..+++|+.|
T Consensus 30 ~~l~~L~L~~N-~i~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 107 (170)
T 3g39_A 30 TTTQVLYLYDN-QITKLEPGVFDRLTQLTRLDLDNNQ-LTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHI 107 (170)
T ss_dssp TTCSEEECCSS-CCCCCCTTTTTTCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred CCCcEEEcCCC-cCCccChhhhcCcccCCEEECCCCC-cCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEE
Confidence 67899999999 9999999899999999999999996 9999999899999999999999999999886 4568999999
Q ss_pred EccCCCcccccC-hHHHHHHHhhcC----------CCCeeeCCCccccCccccccccccC
Q psy16571 88 DIAENPIECGCN-ILWLREMLVRRN----------TSAVFCNSPAPLKYKSLISLSAEDL 136 (150)
Q Consensus 88 ~l~~N~~~c~c~-~~~l~~~~~~~~----------~~~~~C~~~~~l~~~~~~~~~~~~~ 136 (150)
++++|+|.|+|. +.|+..|+.... ...+.|..+ |+++..+....+
T Consensus 108 ~L~~N~~~c~c~~l~~l~~~l~~~~~~~~~~~~~~~~~~~C~~~----~~~~~~~~~~~~ 163 (170)
T 3g39_A 108 WLLNNPWDCACSDILYLSRWISQHPGLVFGYLNLDPDSARCSGT----NTPVRAVTEAST 163 (170)
T ss_dssp ECCSSCBCTTBGGGHHHHHHHHHCGGGEECSSSBCGGGSBBCC-----CCBGGGCCSTTC
T ss_pred EeCCCCCCCCchhHHHHHHHHHhCcceeeccccCCcccceeCCC----Cccchhcccccc
Confidence 999999999995 999999998752 356788775 677777765554
No 11
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.87 E-value=3.2e-21 Score=137.25 Aligned_cols=107 Identities=29% Similarity=0.442 Sum_probs=95.5
Q ss_pred CccccCccccceeccCCCcCcccccCcccCCCCCCCEEeCCCCCCCCccchhhcCCCCCCCeEecCCCCccccCcCcCCC
Q psy16571 2 EKEVKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESMLAW 81 (150)
Q Consensus 2 p~~f~~l~~L~~L~l~~n~~l~~i~~~~~~~l~~L~~l~l~~n~~l~~~~~~~~~~l~~L~~l~l~~n~l~~lp~~~~~~ 81 (150)
+..|.++++|++|++++| .++.+++..|..+++|+.|++++|. ++.+++..|..+++|+.|+|++|.++.+|..++..
T Consensus 117 ~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~ 194 (290)
T 1p9a_G 117 LGALRGLGELQELYLKGN-ELKTLPPGLLTPTPKLEKLSLANNN-LTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGS 194 (290)
T ss_dssp SSTTTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECTTSC-CSCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred HHHHcCCCCCCEEECCCC-CCCccChhhcccccCCCEEECCCCc-CCccCHHHhcCcCCCCEEECCCCcCCccChhhccc
Confidence 456888888889999888 8888888888888899999999885 88888888888899999999999999999988888
Q ss_pred CCccEEEccCCCcccccChHHHHHHHhhc
Q psy16571 82 PELRTIDIAENPIECGCNILWLREMLVRR 110 (150)
Q Consensus 82 ~~L~~L~l~~N~~~c~c~~~~l~~~~~~~ 110 (150)
.+|+.+++.+|+|.|+|++.|+..|+++.
T Consensus 195 ~~L~~l~L~~Np~~C~c~~~~l~~wl~~~ 223 (290)
T 1p9a_G 195 HLLPFAFLHGNPWLCNCEILYFRRWLQDN 223 (290)
T ss_dssp CCCSEEECCSCCBCCSGGGHHHHHHHHHT
T ss_pred ccCCeEEeCCCCccCcCccHHHHHHHHhC
Confidence 89999999999999999999999999864
No 12
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.86 E-value=1.6e-20 Score=124.43 Aligned_cols=122 Identities=23% Similarity=0.431 Sum_probs=104.6
Q ss_pred cccceeccCCCcCcccccCcccCCCCCCCEEeCCCCCCCCccchhhcCCCCCCCeEecCCCCccccCcC-cCCCCCccEE
Q psy16571 9 SYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSES-MLAWPELRTI 87 (150)
Q Consensus 9 ~~L~~L~l~~n~~l~~i~~~~~~~l~~L~~l~l~~n~~l~~~~~~~~~~l~~L~~l~l~~n~l~~lp~~-~~~~~~L~~L 87 (150)
..|+.|++++| .++.+++..|..+++|+.|++++|. ++.+++..|..+++|+.|+|++|.|+.+|.. +..+++|+.|
T Consensus 33 ~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L 110 (174)
T 2r9u_A 33 TDKQRLWLNNN-QITKLEPGVFDHLVNLQQLYFNSNK-LTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHI 110 (174)
T ss_dssp TTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEE
T ss_pred CCCcEEEeCCC-CccccCHHHhcCCcCCCEEECCCCC-CCccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEE
Confidence 68999999999 9999999899999999999999996 9999998889999999999999999999887 5568999999
Q ss_pred EccCCCcccccC-hHHHHHHHhhcC-------------CCCeeeCCCccccCccccccccccC
Q psy16571 88 DIAENPIECGCN-ILWLREMLVRRN-------------TSAVFCNSPAPLKYKSLISLSAEDL 136 (150)
Q Consensus 88 ~l~~N~~~c~c~-~~~l~~~~~~~~-------------~~~~~C~~~~~l~~~~~~~~~~~~~ 136 (150)
++++|+|.|+|. +.|+..|+.... ...+.|+.+ |.++..++...+
T Consensus 111 ~L~~N~~~c~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~----~~~~~~~~~~~~ 169 (174)
T 2r9u_A 111 YLYNNPWDCECRDIMYLRNWVADHTSIVMRWDGKAVNDPDSAKCAGT----NTPVRAVTEAST 169 (174)
T ss_dssp ECCSSCBCTTBGGGHHHHHHHHHCGGGEEEESSSEEECGGGSBBTTT----CCBGGGCCGGGC
T ss_pred EeCCCCcccccccHHHHHHHHHhcccccccccccccCCcccCEECCC----Cccceecccccc
Confidence 999999999996 899999987642 245667664 455666654444
No 13
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.85 E-value=1.1e-20 Score=134.96 Aligned_cols=129 Identities=16% Similarity=0.281 Sum_probs=112.5
Q ss_pred CccccCccccceeccCCCcCcccccCcccCCCCCCCEEeCCCCCCCCccchhhcCCCCCCCeEecCCCCccccCc-CcCC
Q psy16571 2 EKEVKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSE-SMLA 80 (150)
Q Consensus 2 p~~f~~l~~L~~L~l~~n~~l~~i~~~~~~~l~~L~~l~l~~n~~l~~~~~~~~~~l~~L~~l~l~~n~l~~lp~-~~~~ 80 (150)
|..|.++++|++|++++| .++.+++..|..+++|+.|++++|. +..+++..|..+++|+.|++++|.+...+. .+..
T Consensus 168 ~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~ 245 (306)
T 2z66_A 168 PDIFTELRNLTFLDLSQC-QLEQLSPTAFNSLSSLQVLNMSHNN-FFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQH 245 (306)
T ss_dssp CSCCTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECTTSC-CSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCC
T ss_pred hhHHhhCcCCCEEECCCC-CcCCcCHHHhcCCCCCCEEECCCCc-cCccChhhccCcccCCEeECCCCCCcccCHHHHHh
Confidence 566888899999999999 9999888889999999999999996 998888778889999999999999986544 5555
Q ss_pred C-CCccEEEccCCCcccccChHHHHHHHhhcC-----CCCeeeCCCccccCccccccc
Q psy16571 81 W-PELRTIDIAENPIECGCNILWLREMLVRRN-----TSAVFCNSPAPLKYKSLISLS 132 (150)
Q Consensus 81 ~-~~L~~L~l~~N~~~c~c~~~~l~~~~~~~~-----~~~~~C~~~~~l~~~~~~~~~ 132 (150)
+ ++|+.|++++|+|.|+|.+.|+.+|++... ...+.|+.|..++|+++.++.
T Consensus 246 ~~~~L~~L~L~~N~~~~~c~~~~~~~~l~~~~~~~~~~~~~~C~~p~~~~g~~~~~~~ 303 (306)
T 2z66_A 246 FPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSDKQGMPVLSLN 303 (306)
T ss_dssp CCTTCCEEECTTCCEECSGGGHHHHHHHHHTGGGBSCGGGCBEEESGGGTTCBGGGCC
T ss_pred hhccCCEEEccCCCeecccChHHHHHHHHhhhhhhccccccccCCchhhCCceeeeec
Confidence 6 489999999999999999999999997652 567999999999999998883
No 14
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.85 E-value=4.5e-20 Score=129.87 Aligned_cols=134 Identities=25% Similarity=0.439 Sum_probs=109.1
Q ss_pred CccccCccccceeccCCCcCcccccCcccCCCCCCCEEeCCCCCCCCccchhhcCCCCCCCeEecCCCCccccCcCcC-C
Q psy16571 2 EKEVKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESML-A 80 (150)
Q Consensus 2 p~~f~~l~~L~~L~l~~n~~l~~i~~~~~~~l~~L~~l~l~~n~~l~~~~~~~~~~l~~L~~l~l~~n~l~~lp~~~~-~ 80 (150)
+..|.++++|++|++++| .++.+++..|..+++|+.|++++|. ++.+++..|..+++|+.|++++|.++.+|...+ .
T Consensus 126 ~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~ 203 (270)
T 2o6q_A 126 PRVFDSLTKLTYLSLGYN-ELQSLPKGVFDKLTSLKELRLYNNQ-LKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDS 203 (270)
T ss_dssp TTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTT
T ss_pred HHHhCcCcCCCEEECCCC-cCCccCHhHccCCcccceeEecCCc-CcEeChhHhccCCCcCEEECCCCcCCcCCHHHhcc
Confidence 345778888888888888 8888888778888899999999885 888888888889999999999999998887644 4
Q ss_pred CCCccEEEccCCCcccccC-hHHHHHHHhhcC------CCCeeeCCCccccCcccccccccc--CCCCCc
Q psy16571 81 WPELRTIDIAENPIECGCN-ILWLREMLVRRN------TSAVFCNSPAPLKYKSLISLSAED--LGSRVR 141 (150)
Q Consensus 81 ~~~L~~L~l~~N~~~c~c~-~~~l~~~~~~~~------~~~~~C~~~~~l~~~~~~~~~~~~--~~C~~~ 141 (150)
+++|+.|++++|+|.|+|. +.|+..|+.... .....|+. .|+.+.++...+ ..|..|
T Consensus 204 l~~L~~L~l~~N~~~c~c~~~~~~~~~l~~~~~~~~~~~~~~~C~~----~~~~~~~~~~~~~~~~C~~p 269 (270)
T 2o6q_A 204 LEKLKMLQLQENPWDCTCNGIIYMAKWLKKKADEGLGGVDTAGCEK----GGKAVLEITEKDAASDCVSP 269 (270)
T ss_dssp CTTCCEEECCSSCBCCSSSSSHHHHHHHHHHHHTTCSSTTCCBBSS----SCSBGGGCCTTTTCSCCCSC
T ss_pred ccCCCEEEecCCCeeCCCccHHHHHHHHHhhccccccCccccccCC----CCeEeEEecchhhcccCCCC
Confidence 8999999999999999998 678888876542 45578865 377888887766 478765
No 15
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.84 E-value=3.4e-22 Score=156.03 Aligned_cols=136 Identities=23% Similarity=0.424 Sum_probs=86.3
Q ss_pred ccCccccceeccCCCcCcccccCcccCCCCCCCEEeCCCCCCCCccchhhcCCCCCCCeEecCCCCccccCcCcC--CCC
Q psy16571 5 VKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESML--AWP 82 (150)
Q Consensus 5 f~~l~~L~~L~l~~n~~l~~i~~~~~~~l~~L~~l~l~~n~~l~~~~~~~~~~l~~L~~l~l~~n~l~~lp~~~~--~~~ 82 (150)
|.++++|+.|++++| .++.+++..|.++++|+.+++++|. ++.+++..|..+++|+.|++++|.++.++...+ .++
T Consensus 532 ~~~l~~L~~L~L~~N-~l~~i~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~ 609 (680)
T 1ziw_A 532 LKGLSHLHILNLESN-GFDEIPVEVFKDLFELKIIDLGLNN-LNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFR 609 (680)
T ss_dssp TTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHT
T ss_pred hcCCCCCCEEECCCC-CCCCCCHHHcccccCcceeECCCCC-CCcCCHhHhCCCCCCCEEECCCCcCCccChhHhccccc
Confidence 677778888888888 8888887778888888888888885 888888878888888888888888888776544 368
Q ss_pred CccEEEccCCCcccccCh-HHHHHHHhhcC------CCCeeeCCCccccCccccccccccCCCCCcc
Q psy16571 83 ELRTIDIAENPIECGCNI-LWLREMLVRRN------TSAVFCNSPAPLKYKSLISLSAEDLGSRVRA 142 (150)
Q Consensus 83 ~L~~L~l~~N~~~c~c~~-~~l~~~~~~~~------~~~~~C~~~~~l~~~~~~~~~~~~~~C~~~~ 142 (150)
+|+.+++++|+|.|+|++ .||..|..... ..+++|++|..++|+++.++++....|.++.
T Consensus 610 ~L~~l~l~~N~~~c~c~~~~~~~~~~~~~~~~~~~~~~~~~C~~p~~~~g~~l~~~~~~~~~~~~~~ 676 (680)
T 1ziw_A 610 NLTELDMRFNPFDCTCESIAWFVNWINETHTNIPELSSHYLCNTPPHYHGFPVRLFDTSSCKDSAHH 676 (680)
T ss_dssp TCSEEECTTCCCCBCCCCCSSEECCSSCC--------------------------------------
T ss_pred ccCEEEccCCCcccCCccHHHHHHHHHhcCcccccccCCcEECCchHHCCCcccccChhhcCCCccC
Confidence 899999999999999996 89988876542 3568999999999999999998888766543
No 16
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.84 E-value=4.3e-20 Score=127.27 Aligned_cols=125 Identities=21% Similarity=0.376 Sum_probs=79.9
Q ss_pred ccCccccceeccCCCcCcccccCcccCCCCCCCEEeCCCCCCCCccchhhcCCCCCCCeEecCCCCccccCcC-cCCCCC
Q psy16571 5 VKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSES-MLAWPE 83 (150)
Q Consensus 5 f~~l~~L~~L~l~~n~~l~~i~~~~~~~l~~L~~l~l~~n~~l~~~~~~~~~~l~~L~~l~l~~n~l~~lp~~-~~~~~~ 83 (150)
|.++++|+.|++++| .++.+++..|..+++|+.|++++|. ++.++.. +..+++|+.|+|++|.++.++.. +..+++
T Consensus 84 ~~~l~~L~~L~Ls~N-~l~~l~~~~~~~l~~L~~L~Ls~N~-l~~lp~~-~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~ 160 (229)
T 3e6j_A 84 FDSLTQLTVLDLGTN-QLTVLPSAVFDRLVHLKELFMCCNK-LTELPRG-IERLTHLTHLALDQNQLKSIPHGAFDRLSS 160 (229)
T ss_dssp TTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC-CCSCCTT-GGGCTTCSEEECCSSCCCCCCTTTTTTCTT
T ss_pred cccCCCcCEEECCCC-cCCccChhHhCcchhhCeEeccCCc-ccccCcc-cccCCCCCEEECCCCcCCccCHHHHhCCCC
Confidence 444445555555554 5555544444445555555555553 5444332 34556666666666666666654 334789
Q ss_pred ccEEEccCCCcccccC-hHHHHHHHhhc-------------CCCCeeeCCCccccCccccccccccC
Q psy16571 84 LRTIDIAENPIECGCN-ILWLREMLVRR-------------NTSAVFCNSPAPLKYKSLISLSAEDL 136 (150)
Q Consensus 84 L~~L~l~~N~~~c~c~-~~~l~~~~~~~-------------~~~~~~C~~~~~l~~~~~~~~~~~~~ 136 (150)
|+.|++.+|+|.|+|. +.|+..|+... +.....|+.+ |+++..+....+
T Consensus 161 L~~L~l~~N~~~c~c~~~~~l~~~~~~~~~~~~~~~g~~v~~~~~~~C~~~----~~~~~~~~~~~~ 223 (229)
T 3e6j_A 161 LTHAYLFGNPWDCECRDIMYLRNWVADHTSIAMRWDGKAVNDPDSAKCAGT----NTPVRAVTEAST 223 (229)
T ss_dssp CCEEECTTSCBCTTBGGGHHHHHHHHHCGGGEEEESSSEEECTTCSBBTTT----CCBGGGCCGGGC
T ss_pred CCEEEeeCCCccCCcchhHHHHHHHHhCccccccccCcccCCCCcCccCCC----Cccceecccccc
Confidence 9999999999999995 89999999764 2456788876 567777766665
No 17
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.84 E-value=4.2e-21 Score=148.07 Aligned_cols=134 Identities=15% Similarity=0.292 Sum_probs=104.5
Q ss_pred CccccCccccceeccCCCcCcccccCcccCCCCCCCEEeCCCCCCCCccchhhcCCCCCCCeEecCCCCccccCcCcCCC
Q psy16571 2 EKEVKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESMLAW 81 (150)
Q Consensus 2 p~~f~~l~~L~~L~l~~n~~l~~i~~~~~~~l~~L~~l~l~~n~~l~~~~~~~~~~l~~L~~l~l~~n~l~~lp~~~~~~ 81 (150)
|..|.++++|+.|++++| .++.+++..|..+++|+.|++++|. +..+.+..|..+++|+.|++++|.++.+|..+..+
T Consensus 466 ~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~l~~N~l~~~p~~~~~l 543 (606)
T 3vq2_A 466 SNVFANTTNLTFLDLSKC-QLEQISWGVFDTLHRLQLLNMSHNN-LLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHF 543 (606)
T ss_dssp CSCCTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSSC-CSCEEGGGTTTCTTCCEEECTTSCCCCEESCGGGS
T ss_pred HHhhccCCCCCEEECCCC-cCCccChhhhcccccCCEEECCCCc-CCCcCHHHccCCCcCCEEECCCCcCcccCHhHhhh
Confidence 567889999999999999 9999988889999999999999996 99998888999999999999999999999987777
Q ss_pred C-CccEEEccCCCcccccChHHHHHHHhhcC-----CCCeeeCCCccccCccccccccccCCCC
Q psy16571 82 P-ELRTIDIAENPIECGCNILWLREMLVRRN-----TSAVFCNSPAPLKYKSLISLSAEDLGSR 139 (150)
Q Consensus 82 ~-~L~~L~l~~N~~~c~c~~~~l~~~~~~~~-----~~~~~C~~~~~l~~~~~~~~~~~~~~C~ 139 (150)
+ +|+.|++++|+|.|+|.+.|+.+|++... ...+.|..|..++|+++.++... .|.
T Consensus 544 ~~~L~~l~l~~N~~~c~c~~~~~~~~l~~~~~~~~~~~~~~C~~p~~~~~~~l~~~~~~--~c~ 605 (606)
T 3vq2_A 544 PKSLAFFNLTNNSVACICEHQKFLQWVKEQKQFLVNVEQMTCATPVEMNTSLVLDFNNS--TCY 605 (606)
T ss_dssp CTTCCEEECCSCCCCCSSTTHHHHTTTTTSSSSBSSGGGCCCC---------------------
T ss_pred cccCcEEEccCCCcccCCccHHHHHHHHcCcccccCCccceeCCChHhCCCEeeecccc--cCC
Confidence 6 69999999999999999999999987652 46789999999999999998755 364
No 18
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.84 E-value=4.5e-21 Score=144.34 Aligned_cols=140 Identities=24% Similarity=0.416 Sum_probs=121.4
Q ss_pred ccccCccccceeccCCCcCcccccCcccCCCCCCCEEeCCCCCCCCccchhhcCCCCCCCeEecCCCCccccCcCcC-CC
Q psy16571 3 KEVKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESML-AW 81 (150)
Q Consensus 3 ~~f~~l~~L~~L~l~~n~~l~~i~~~~~~~l~~L~~l~l~~n~~l~~~~~~~~~~l~~L~~l~l~~n~l~~lp~~~~-~~ 81 (150)
..|.++++|+.|++++| .++.+++..|..+++|+.|++++|. +..+.+..|..+++|+.|+|++|.++.++...+ .+
T Consensus 242 ~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l 319 (477)
T 2id5_A 242 LAVRHLVYLRFLNLSYN-PISTIEGSMLHELLRLQEIQLVGGQ-LAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSV 319 (477)
T ss_dssp HHHTTCTTCCEEECCSS-CCCEECTTSCTTCTTCCEEECCSSC-CSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCG
T ss_pred HHhcCccccCeeECCCC-cCCccChhhccccccCCEEECCCCc-cceECHHHhcCcccCCEEECCCCcCceeCHhHcCCC
Confidence 35778899999999999 9999999899999999999999996 999998899999999999999999999988654 58
Q ss_pred CCccEEEccCCCcccccChHHHHHHHhhc--CCCCeeeCCCccccCcccccccc----ccCCCCCcccc
Q psy16571 82 PELRTIDIAENPIECGCNILWLREMLVRR--NTSAVFCNSPAPLKYKSLISLSA----EDLGSRVRALF 144 (150)
Q Consensus 82 ~~L~~L~l~~N~~~c~c~~~~l~~~~~~~--~~~~~~C~~~~~l~~~~~~~~~~----~~~~C~~~~~~ 144 (150)
++|+.|++++|+|.|+|.+.|+.++.... ......|..|..++|+.+.++.. +.+.|..|.+.
T Consensus 320 ~~L~~L~l~~N~l~c~c~~~~~~~~~~~~~~~~~~~~C~~p~~~~g~~l~~~~~~~~~~~~~C~~P~i~ 388 (477)
T 2id5_A 320 GNLETLILDSNPLACDCRLLWVFRRRWRLNFNRQQPTCATPEFVQGKEFKDFPDVLLPNYFTCRRARIR 388 (477)
T ss_dssp GGCCEEECCSSCEECSGGGHHHHTTTTSSCCTTCCCBEEESGGGTTCBGGGSCSSCCTTSSCCEEEEES
T ss_pred cccCEEEccCCCccCccchHhHHhhhhccccCccCceeCCchHHcCCchhhCccccccceeEecccccc
Confidence 89999999999999999999998876543 35678999999999999987753 35778765543
No 19
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.83 E-value=1.6e-19 Score=125.83 Aligned_cols=107 Identities=29% Similarity=0.444 Sum_probs=90.7
Q ss_pred CccccCccccceeccCCCcCcccccCcccCCCCCCCEEeCCCCCCCCccchhhcCCCCCCCeEecCCCCccccCcC-cCC
Q psy16571 2 EKEVKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSES-MLA 80 (150)
Q Consensus 2 p~~f~~l~~L~~L~l~~n~~l~~i~~~~~~~l~~L~~l~l~~n~~l~~~~~~~~~~l~~L~~l~l~~n~l~~lp~~-~~~ 80 (150)
+..|.++++|++|++++| .++.+++..|..+++|+.|++++|. ++.+++..|..+++|+.|+|++|.++.++.. +..
T Consensus 100 ~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~ 177 (251)
T 3m19_A 100 LGVFDHLTQLDKLYLGGN-QLKSLPSGVFDRLTKLKELRLNTNQ-LQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDR 177 (251)
T ss_dssp TTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTT
T ss_pred hhHhcccCCCCEEEcCCC-cCCCcChhHhccCCcccEEECcCCc-CCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhC
Confidence 345677788888888888 8888887778888888888888885 8888887788889999999999999988774 445
Q ss_pred CCCccEEEccCCCcccc-cChHHHHHHHhhc
Q psy16571 81 WPELRTIDIAENPIECG-CNILWLREMLVRR 110 (150)
Q Consensus 81 ~~~L~~L~l~~N~~~c~-c~~~~l~~~~~~~ 110 (150)
+++|+.|++++|+|.|+ |++.|+..|....
T Consensus 178 l~~L~~L~l~~N~~~c~~~~~~~l~~~~~~~ 208 (251)
T 3m19_A 178 LGKLQTITLFGNQFDCSRCEILYLSQWIREN 208 (251)
T ss_dssp CTTCCEEECCSCCBCTTSTTHHHHHHHHHHS
T ss_pred CCCCCEEEeeCCceeCCccccHHHHHHHHhc
Confidence 88999999999999999 9999999999754
No 20
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.82 E-value=1.5e-19 Score=119.78 Aligned_cols=124 Identities=23% Similarity=0.404 Sum_probs=107.5
Q ss_pred CccccCccccceeccCCCcCcccccCcccCCCCCCCEEeCCCCCCCCccchhhcCCCCCCCeEecCCCCccccCcCcC-C
Q psy16571 2 EKEVKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESML-A 80 (150)
Q Consensus 2 p~~f~~l~~L~~L~l~~n~~l~~i~~~~~~~l~~L~~l~l~~n~~l~~~~~~~~~~l~~L~~l~l~~n~l~~lp~~~~-~ 80 (150)
+..|.++++|++|++++| .++.+++..|..+++|+.|++++|. ++.+++..|..+++|+.|++++|.++.+|...+ .
T Consensus 45 ~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~ 122 (177)
T 2o6r_A 45 HGVFDKLTQLTKLSLSQN-QIQSLPDGVFDKLTKLTILYLHENK-LQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDR 122 (177)
T ss_dssp TTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTT
T ss_pred HHHhcCcccccEEECCCC-cceEeChhHccCCCccCEEECCCCC-ccccCHHHhhCCcccCEEECcCCcceEeCHHHhcC
Confidence 345788999999999999 9999998889999999999999996 999998888899999999999999999988764 4
Q ss_pred CCCccEEEccCCCcccccC-hHHHHHHHhhcC---CCCeeeCCCccccCcccccc
Q psy16571 81 WPELRTIDIAENPIECGCN-ILWLREMLVRRN---TSAVFCNSPAPLKYKSLISL 131 (150)
Q Consensus 81 ~~~L~~L~l~~N~~~c~c~-~~~l~~~~~~~~---~~~~~C~~~~~l~~~~~~~~ 131 (150)
+++|+.|++++|+|.|+|. +.|+..|..... .....|..+ |+++.++
T Consensus 123 l~~L~~L~l~~N~~~~~~~~l~~l~~~~~~~~~~~~~~~~C~~~----~~~~~~i 173 (177)
T 2o6r_A 123 LTSLQKIWLHTNPWDCSCPRIDYLSRWLNKNSQKEQGSAKCSGS----GKPVRSI 173 (177)
T ss_dssp CTTCCEEECCSSCBCCCHHHHHHHHHHHHHTGGGEESCCBBTTT----CCBGGGC
T ss_pred CcccCEEEecCCCeeccCccHHHHHHHHhhCccccccCcEeCCC----Cccccee
Confidence 8999999999999999998 789999987664 466788764 4555444
No 21
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.81 E-value=4.6e-20 Score=142.28 Aligned_cols=127 Identities=24% Similarity=0.413 Sum_probs=107.4
Q ss_pred ccccCccccceeccCCCcCcccccCcccCCCCCCCEEeCCCCCCCCccchhhcCCCCCCCeEecCCCCccccCcC-cCCC
Q psy16571 3 KEVKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSES-MLAW 81 (150)
Q Consensus 3 ~~f~~l~~L~~L~l~~n~~l~~i~~~~~~~l~~L~~l~l~~n~~l~~~~~~~~~~l~~L~~l~l~~n~l~~lp~~-~~~~ 81 (150)
..|.++++|+.|++++| .++.+++..|..+++|+.+++++|. +..+.+..|..++.| .+++++|.++.+++. +..+
T Consensus 470 ~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l 546 (606)
T 3t6q_A 470 NSLQTLGRLEILVLSFC-DLSSIDQHAFTSLKMMNHVDLSHNR-LTSSSIEALSHLKGI-YLNLASNHISIILPSLLPIL 546 (606)
T ss_dssp CGGGGCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSSC-CCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHH
T ss_pred hhhccCCCccEEECCCC-ccCccChhhhccccCCCEEECCCCc-cCcCChhHhCccccc-EEECcCCcccccCHhhcccC
Confidence 35677788888888888 8888877788888888888888885 888888888888888 888888888877654 3447
Q ss_pred CCccEEEccCCCcccccChHHHHHHHhhc-----CCCCeeeCCCccccCccccccc
Q psy16571 82 PELRTIDIAENPIECGCNILWLREMLVRR-----NTSAVFCNSPAPLKYKSLISLS 132 (150)
Q Consensus 82 ~~L~~L~l~~N~~~c~c~~~~l~~~~~~~-----~~~~~~C~~~~~l~~~~~~~~~ 132 (150)
++|+.+++++|+|.|+|.+.|+..|++.. ....+.|.+|..++|+++.+++
T Consensus 547 ~~L~~L~l~~N~~~c~c~~~~~~~w~~~~~~~~~~~~~~~C~~p~~~~g~~l~~~~ 602 (606)
T 3t6q_A 547 SQQRTINLRQNPLDCTCSNIYFLEWYKENMQKLEDTEDTLCENPPLLRGVRLSDVT 602 (606)
T ss_dssp HTSSEEECTTCCEECSGGGHHHHHHHHHCGGGEECGGGCBEEESGGGTTCBGGGCC
T ss_pred CCCCEEeCCCCCccccCCcHHHHHHHHhCcccccCCCCCeeCCchHhCCCeeeeee
Confidence 88999999999999999999999999864 2567899999999999999984
No 22
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.80 E-value=4.1e-19 Score=129.74 Aligned_cols=133 Identities=21% Similarity=0.422 Sum_probs=95.0
Q ss_pred CccccCccccceeccCCCcCcccccCcccCCCCCCCEEeCCCCCCCCccchhhcCCCCCCCeEecCCCCccccCcCcC--
Q psy16571 2 EKEVKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESML-- 79 (150)
Q Consensus 2 p~~f~~l~~L~~L~l~~n~~l~~i~~~~~~~l~~L~~l~l~~n~~l~~~~~~~~~~l~~L~~l~l~~n~l~~lp~~~~-- 79 (150)
+.+|.++++|++|++++| .++.+++..|..+++|+.|++++|. +..+++..|..+++|+.|+|++|.|+.+|..++
T Consensus 81 ~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N~-i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~ 158 (361)
T 2xot_A 81 SEAFVPVPNLRYLDLSSN-HLHTLDEFLFSDLQALEVLLLYNNH-IVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKD 158 (361)
T ss_dssp TTTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC-
T ss_pred hhhccCCCCCCEEECCCC-cCCcCCHHHhCCCcCCCEEECCCCc-ccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcC
Confidence 346777777788888877 7777777777777778888887775 777777777777888888888888777776543
Q ss_pred --CCCC--------------------------ccEEEccCCCcccccChHHH-HHHHhhcC------CCCeeeCCCcccc
Q psy16571 80 --AWPE--------------------------LRTIDIAENPIECGCNILWL-REMLVRRN------TSAVFCNSPAPLK 124 (150)
Q Consensus 80 --~~~~--------------------------L~~L~l~~N~~~c~c~~~~l-~~~~~~~~------~~~~~C~~~~~l~ 124 (150)
.+++ ++.|++.+|+|.|||++.|+ ..|..+.. ...+.|..|..+.
T Consensus 159 ~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~C~C~l~~~~~~~~~~~~~~~~~~~~~~~C~~p~~~~ 238 (361)
T 2xot_A 159 GNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLECDCKLYQLFSHWQYRQLSSVMDFQEDLYCMHSKKLH 238 (361)
T ss_dssp ---CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEECCHHHHHHHHHHHHTTCHHHHTTGGGCEEESSSCCE
T ss_pred cccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCccCCcCcHHHHHHHHHhcCCchhccCcCCEeCCChHHc
Confidence 1222 25688899999999999885 66775432 3578999997765
Q ss_pred CccccccccccCCCCC
Q psy16571 125 YKSLISLSAEDLGSRV 140 (150)
Q Consensus 125 ~~~~~~~~~~~~~C~~ 140 (150)
+ +..+ ..+.|..
T Consensus 239 ~--~~~~--~~~~C~~ 250 (361)
T 2xot_A 239 N--IFSL--DFFNCSE 250 (361)
T ss_dssp E--GGGC--CCTTCCS
T ss_pred C--cccc--ccccCCC
Confidence 4 2233 2566754
No 23
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=99.77 E-value=5.9e-19 Score=111.67 Aligned_cols=102 Identities=24% Similarity=0.376 Sum_probs=83.2
Q ss_pred CEEeCCCCCCCC--ccchhhcCCCCCCCeEecCCCCccccCcCcCC-CCCccEEEccCCCcccccChHHHHHHHhhcC--
Q psy16571 37 ETLTLNKNPKLK--IIEEDALVGLPNLYHLNLKENAFTSFSESMLA-WPELRTIDIAENPIECGCNILWLREMLVRRN-- 111 (150)
Q Consensus 37 ~~l~l~~n~~l~--~~~~~~~~~l~~L~~l~l~~n~l~~lp~~~~~-~~~L~~L~l~~N~~~c~c~~~~l~~~~~~~~-- 111 (150)
..++.+++. ++ .++.. -..+|+.|+|++|.|+.+|..++. +++|+.|+|.+|||.|||++.||..|+....
T Consensus 11 ~~v~Cs~~~-L~~~~vP~~---lp~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~CdC~l~~l~~wl~~~~~~ 86 (130)
T 3rfe_A 11 TLVDCGRRG-LTWASLPTA---FPVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRCDCRLVPLRAWLAGRPER 86 (130)
T ss_dssp TEEECCSSC-CCTTTSCSC---CCTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBCSGGGHHHHHHHHTSSCS
T ss_pred CEEEeCCCC-CccccCCCC---CCcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCeeccCccHHHHHHHHhCccc
Confidence 366777774 77 67643 135688999999999999887665 7899999999999999999999999998763
Q ss_pred --CCCeeeCCCccccCccccccccccCC--CCCcc
Q psy16571 112 --TSAVFCNSPAPLKYKSLISLSAEDLG--SRVRA 142 (150)
Q Consensus 112 --~~~~~C~~~~~l~~~~~~~~~~~~~~--C~~~~ 142 (150)
..+++|++|..++|+.+.++..+++. |....
T Consensus 87 ~~~~~~~C~~P~~l~g~~l~~l~~~~l~c~C~~~~ 121 (130)
T 3rfe_A 87 APYRDLRCVAPPALRGRLLPYLAEDELRAACAPGP 121 (130)
T ss_dssp GGGTTCBCCBSTTTTTCBGGGCCHHHHHHTTCC--
T ss_pred ccccCcEeCcChHHcCCCcccCCHHHhhCcCCCCc
Confidence 46799999999999999999998886 55443
No 24
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.76 E-value=5.4e-19 Score=141.27 Aligned_cols=131 Identities=27% Similarity=0.436 Sum_probs=109.8
Q ss_pred ccccCccccceeccCCCcCcccccCcccCCCCCCCEEeCCCCCCCCccchhhcCCCCCCCeEecCCCCccccCcCcCCCC
Q psy16571 3 KEVKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESMLAWP 82 (150)
Q Consensus 3 ~~f~~l~~L~~L~l~~n~~l~~i~~~~~~~l~~L~~l~l~~n~~l~~~~~~~~~~l~~L~~l~l~~n~l~~lp~~~~~~~ 82 (150)
..|.++++|+.|++++| .++.+++..|.++++|+.|++++|. ++.+++..+. ++|+.|++++|.++.+++..+ .
T Consensus 474 ~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~~--~ 547 (844)
T 3j0a_A 474 DVFEGLSHLQVLYLNHN-YLNSLPPGVFSHLTALRGLSLNSNR-LTVLSHNDLP--ANLEILDISRNQLLAPNPDVF--V 547 (844)
T ss_dssp SCSSCBCCEECCCCCHH-HHTTCCTTSSSSCCSCSEEEEESCC-CSSCCCCCCC--SCCCEEEEEEECCCCCCSCCC--S
T ss_pred hhhcCcccccEEECCCC-cccccChhHccchhhhheeECCCCC-CCccChhhhh--ccccEEECCCCcCCCCChhHh--C
Confidence 45788889999999999 9999998889999999999999996 9988887665 789999999999998776554 4
Q ss_pred CccEEEccCCCcccccChHHHHHHHhhcC------CCCeeeCCCccccCccccccccccCCCCCc
Q psy16571 83 ELRTIDIAENPIECGCNILWLREMLVRRN------TSAVFCNSPAPLKYKSLISLSAEDLGSRVR 141 (150)
Q Consensus 83 ~L~~L~l~~N~~~c~c~~~~l~~~~~~~~------~~~~~C~~~~~l~~~~~~~~~~~~~~C~~~ 141 (150)
+++.+++++|+|.|+|++.|+..|..... ...+.|.+|..++|.++.++... .|..+
T Consensus 548 ~L~~l~l~~Np~~C~c~~~~f~~~~~~~~~~~~~~~~~~~C~~p~~~~g~~l~~~~~~--~C~~~ 610 (844)
T 3j0a_A 548 SLSVLDITHNKFICECELSTFINWLNHTNVTIAGPPADIYCVYPDSFSGVSLFSLSTE--GCDEE 610 (844)
T ss_dssp SCCEEEEEEECCCCSSSCCSHHHHHHHTTTTTCCCGGGCCCSSCSSSCSCCTTTCCCC--CC---
T ss_pred CcCEEEecCCCcccccccHHHHHHHHhcCcccccccccCccCCchhhCCCccccCccc--cCCch
Confidence 89999999999999999999999987653 35689999999999999888653 58653
No 25
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.75 E-value=9.1e-18 Score=125.42 Aligned_cols=117 Identities=26% Similarity=0.490 Sum_probs=100.8
Q ss_pred CccccCccccceeccCCCcCcccccCcccCCCCCCCEEeCCCCCCCCccchhhcCCCCCCCeEecCCCCccccCcCcC-C
Q psy16571 2 EKEVKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESML-A 80 (150)
Q Consensus 2 p~~f~~l~~L~~L~l~~n~~l~~i~~~~~~~l~~L~~l~l~~n~~l~~~~~~~~~~l~~L~~l~l~~n~l~~lp~~~~-~ 80 (150)
|..|.++++|++|++++| .++.+++..|..+++|+.|++++|. ++.+.+..|..+++|+.|++++|.++.+|...+ .
T Consensus 316 ~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~ 393 (455)
T 3v47_A 316 DNAFWGLTHLLKLNLSQN-FLGSIDSRMFENLDKLEVLDLSYNH-IRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDR 393 (455)
T ss_dssp TTTTTTCTTCCEEECCSS-CCCEECGGGGTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTT
T ss_pred hhHhcCcccCCEEECCCC-ccCCcChhHhcCcccCCEEECCCCc-ccccChhhccccccccEEECCCCccccCCHhHhcc
Confidence 557888888999999998 8888888888889999999999996 888888888899999999999999999887654 5
Q ss_pred CCCccEEEccCCCcccccC-hHHHHHHHhhcC---CCCeeeCCC
Q psy16571 81 WPELRTIDIAENPIECGCN-ILWLREMLVRRN---TSAVFCNSP 120 (150)
Q Consensus 81 ~~~L~~L~l~~N~~~c~c~-~~~l~~~~~~~~---~~~~~C~~~ 120 (150)
+++|+.|++++|++.|+|. +.|+..|..... .....|..+
T Consensus 394 l~~L~~L~l~~N~l~~~~~~~~~l~~~l~~~~~~~~~~~~c~~~ 437 (455)
T 3v47_A 394 LTSLQKIWLHTNPWDCSCPRIDYLSRWLNKNSQKEQGSAKCSGS 437 (455)
T ss_dssp CTTCCEEECCSSCBCCCTTTTHHHHHHHHHTTTTEESCCBBTTT
T ss_pred CCcccEEEccCCCcccCCCcchHHHHHHHhCccceeeeeeecCC
Confidence 8999999999999999998 789999998663 456788775
No 26
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.71 E-value=6.7e-17 Score=122.69 Aligned_cols=114 Identities=21% Similarity=0.368 Sum_probs=85.2
Q ss_pred cccCccccceeccCCCcCccc-ccCcccCCC----------------------CCCCEEeCCCCCCCCccchhhcCCCCC
Q psy16571 4 EVKGLSYLKRLEITGASNLTR-VRKGAFADN----------------------LNLETLTLNKNPKLKIIEEDALVGLPN 60 (150)
Q Consensus 4 ~f~~l~~L~~L~l~~n~~l~~-i~~~~~~~l----------------------~~L~~l~l~~n~~l~~~~~~~~~~l~~ 60 (150)
.|.++++|++|++++| .+.. ++...+..+ ++|+.|++++|. ++.++...+ .+++
T Consensus 369 ~~~~l~~L~~L~Ls~N-~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~L~~L~Ls~N~-l~~ip~~~~-~l~~ 445 (520)
T 2z7x_B 369 MTTQMKSLQQLDISQN-SVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPPRIKVLDLHSNK-IKSIPKQVV-KLEA 445 (520)
T ss_dssp HHTTCTTCCEEECCSS-CCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCCTTCCEEECCSSC-CCCCCGGGG-GCTT
T ss_pred HHhhCCCCCEEECCCC-cCCcccccchhccCccCCEEECcCCCCCcchhhhhcccCCEEECCCCc-ccccchhhh-cCCC
Confidence 3455556666666665 5554 444334333 466666676664 666666544 7899
Q ss_pred CCeEecCCCCccccCcC-cCCCCCccEEEccCCCcccccChHHH-HHHHhhcC---CCCeeeCCC
Q psy16571 61 LYHLNLKENAFTSFSES-MLAWPELRTIDIAENPIECGCNILWL-REMLVRRN---TSAVFCNSP 120 (150)
Q Consensus 61 L~~l~l~~n~l~~lp~~-~~~~~~L~~L~l~~N~~~c~c~~~~l-~~~~~~~~---~~~~~C~~~ 120 (150)
|+.|++++|.++.+|.. +..+++|+.|++++|+|.|+|.+.|+ ..|..+.. ..+++|+.|
T Consensus 446 L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c~~~~~~~~~~~~~~~~~~~~~~C~~p 510 (520)
T 2z7x_B 446 LQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNKNSQKEQGSAKCSGS 510 (520)
T ss_dssp CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHHHHHHHHHHHHHTTTTEESCCBBTTT
T ss_pred CCEEECCCCcCCccCHHHhccCCcccEEECcCCCCcccCCchHHHHHHHHhccccCCCCCCcCCc
Confidence 99999999999999887 55689999999999999999999999 99987654 467899998
No 27
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.70 E-value=4.3e-17 Score=114.75 Aligned_cols=115 Identities=24% Similarity=0.384 Sum_probs=80.9
Q ss_pred cccCccccceeccCCCcCccccc-CcccCCCCCCCEEeCCCCCCCCccchhhcC--------------------------
Q psy16571 4 EVKGLSYLKRLEITGASNLTRVR-KGAFADNLNLETLTLNKNPKLKIIEEDALV-------------------------- 56 (150)
Q Consensus 4 ~f~~l~~L~~L~l~~n~~l~~i~-~~~~~~l~~L~~l~l~~n~~l~~~~~~~~~-------------------------- 56 (150)
.|.++++|++|++++| .++.+. +..|..+++|+.|++++|. ++.+++..|.
T Consensus 119 ~~~~l~~L~~L~l~~n-~l~~~~l~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~ 196 (276)
T 2z62_A 119 PIGHLKTLKELNVAHN-LIQSFKLPEYFSNLTNLEHLDLSSNK-IQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGA 196 (276)
T ss_dssp CCTTCTTCCEEECCSS-CCCCCCCCGGGGGCTTCCEEECCSSC-CCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTS
T ss_pred hcccCCCCCEEECcCC-ccceecCchhhccCCCCCEEECCCCC-CCcCCHHHhhhhhhccccceeeecCCCcccccCccc
Confidence 4556666666666666 666543 4456666666666666664 5554432221
Q ss_pred -CCCCCCeEecCCCCccccCcCcC-CCCCccEEEccCCCcccccC-hHHHHHHHhhcC---CCCeeeCCC
Q psy16571 57 -GLPNLYHLNLKENAFTSFSESML-AWPELRTIDIAENPIECGCN-ILWLREMLVRRN---TSAVFCNSP 120 (150)
Q Consensus 57 -~l~~L~~l~l~~n~l~~lp~~~~-~~~~L~~L~l~~N~~~c~c~-~~~l~~~~~~~~---~~~~~C~~~ 120 (150)
...+|+.|++++|.++.+|..++ .+++|+.|++++|+|.|+|. +.|+..|..... .....|..+
T Consensus 197 ~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~l~~l~~~~~~~~~~~~~~~~C~~~ 266 (276)
T 2z62_A 197 FKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNKNSQKEQGSAKCSGS 266 (276)
T ss_dssp SCSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTTTTHHHHHHHHHTGGGBCSCCBBTTT
T ss_pred cCCCcccEEECCCCceeecCHhHhcccccccEEEccCCcccccCCchHHHHHHHHhcccccCCCceeeCC
Confidence 12368888899999998887654 48999999999999999996 789999987653 456788887
No 28
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.69 E-value=2e-16 Score=121.31 Aligned_cols=121 Identities=21% Similarity=0.318 Sum_probs=89.6
Q ss_pred cccCccccceeccCCCcCccc-ccCcccCCC----------------------CCCCEEeCCCCCCCCccchhhcCCCCC
Q psy16571 4 EVKGLSYLKRLEITGASNLTR-VRKGAFADN----------------------LNLETLTLNKNPKLKIIEEDALVGLPN 60 (150)
Q Consensus 4 ~f~~l~~L~~L~l~~n~~l~~-i~~~~~~~l----------------------~~L~~l~l~~n~~l~~~~~~~~~~l~~ 60 (150)
.|.++++|+.|++++| .++. ++...+..+ ++|+.|++++|. ++.++...+ .+++
T Consensus 398 ~~~~l~~L~~L~l~~N-~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~~L~~L~L~~N~-l~~ip~~~~-~l~~ 474 (562)
T 3a79_B 398 MTKNMSSLETLDVSLN-SLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPPKVKVLDLHNNR-IMSIPKDVT-HLQA 474 (562)
T ss_dssp TTTTCTTCCEEECTTS-CCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCCTTCSEEECCSSC-CCCCCTTTT-SSCC
T ss_pred hhcCCCCCCEEECCCC-cCCCccChhhhcCcccCCEEECCCCCCCcchhhhhcCcCCEEECCCCc-CcccChhhc-CCCC
Confidence 3556666666666666 5555 444433333 467777777774 777776655 7899
Q ss_pred CCeEecCCCCccccCcC-cCCCCCccEEEccCCCcccccChHHHHH-HHhhcC-----------CCCeeeCCCccccCcc
Q psy16571 61 LYHLNLKENAFTSFSES-MLAWPELRTIDIAENPIECGCNILWLRE-MLVRRN-----------TSAVFCNSPAPLKYKS 127 (150)
Q Consensus 61 L~~l~l~~n~l~~lp~~-~~~~~~L~~L~l~~N~~~c~c~~~~l~~-~~~~~~-----------~~~~~C~~~~~l~~~~ 127 (150)
|+.|++++|.++.+|.. +..+++|+.|++++|+|.|+|.+.|+.+ |..... ...+.|++ +|++
T Consensus 475 L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~----~g~~ 550 (562)
T 3a79_B 475 LQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPGIRYLSEWINKHSGVVRNSAGSVAPDSAKCSG----SGKP 550 (562)
T ss_dssp CSEEECCSSCCCCCCTTSTTTCTTCCCEECCSCCBCCCHHHHHHHHHHHHHTTTTEECSSSSBCSSSSCBSS----SCCC
T ss_pred CCEEECCCCCCCCCCHHHHhcCCCCCEEEecCCCcCCCcchHHHHHHHHHhcCCcccccccCCCCCCCccCC----CCcE
Confidence 99999999999999987 6668999999999999999999999955 775442 34678877 6777
Q ss_pred cccc
Q psy16571 128 LISL 131 (150)
Q Consensus 128 ~~~~ 131 (150)
+.++
T Consensus 551 l~~~ 554 (562)
T 3a79_B 551 VRSI 554 (562)
T ss_dssp TTTC
T ss_pred eeee
Confidence 7766
No 29
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.69 E-value=3.7e-16 Score=105.77 Aligned_cols=106 Identities=25% Similarity=0.425 Sum_probs=87.7
Q ss_pred ccccCccccceeccCCCcCcccccCcccCCCCCCCEEeCCCCCCCCccchhhcCCCCCCCeEecCCCCccccCcCc-CCC
Q psy16571 3 KEVKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESM-LAW 81 (150)
Q Consensus 3 ~~f~~l~~L~~L~l~~n~~l~~i~~~~~~~l~~L~~l~l~~n~~l~~~~~~~~~~l~~L~~l~l~~n~l~~lp~~~-~~~ 81 (150)
..|.++++|++|++++| .++.+++..|..+++|+.|++++|. ++.+++..|..+++|+.|++++|.++.++... ..+
T Consensus 70 ~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l 147 (208)
T 2o6s_A 70 GVFNKLTSLTYLNLSTN-QLQSLPNGVFDKLTQLKELALNTNQ-LQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRL 147 (208)
T ss_dssp TTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTC
T ss_pred hhcCCCCCcCEEECCCC-cCCccCHhHhcCccCCCEEEcCCCc-CcccCHhHhccCCcCCEEECCCCccceeCHHHhccC
Confidence 45677888888888888 8888887777888888888888885 88888777788889999999999998887764 458
Q ss_pred CCccEEEccCCCcccccC-hHHHHHHHhhc
Q psy16571 82 PELRTIDIAENPIECGCN-ILWLREMLVRR 110 (150)
Q Consensus 82 ~~L~~L~l~~N~~~c~c~-~~~l~~~~~~~ 110 (150)
++|+.|++++|++.|+|. +.++..|....
T Consensus 148 ~~L~~L~l~~N~~~~~~~~l~~L~~~~n~~ 177 (208)
T 2o6s_A 148 TSLQYIWLHDNPWDCTCPGIRYLSEWINKH 177 (208)
T ss_dssp TTCCEEECCSCCBCCCTTTTHHHHHHHHHC
T ss_pred CCccEEEecCCCeecCCCCHHHHHHHHHhC
Confidence 999999999999999996 77887776654
No 30
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.67 E-value=2.3e-15 Score=105.88 Aligned_cols=106 Identities=27% Similarity=0.420 Sum_probs=86.9
Q ss_pred ccccCccccceeccCCCcCcccccCcccCCCCCCCEEeCCCCCCCCccchhhcCCCCCCCeEecCCCCccccCcCc-CCC
Q psy16571 3 KEVKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESM-LAW 81 (150)
Q Consensus 3 ~~f~~l~~L~~L~l~~n~~l~~i~~~~~~~l~~L~~l~l~~n~~l~~~~~~~~~~l~~L~~l~l~~n~l~~lp~~~-~~~ 81 (150)
..|.++++|++|++++| .++.+++..|..+++|+.|++++|. ++.+++..|..+++|+.|++++|.++.++... ..+
T Consensus 127 ~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l 204 (272)
T 3rfs_A 127 GVFDKLTNLTYLNLAHN-QLQSLPKGVFDKLTNLTELDLSYNQ-LQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRL 204 (272)
T ss_dssp TTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTC
T ss_pred HHhccCCCCCEEECCCC-ccCccCHHHhccCccCCEEECCCCC-cCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCC
Confidence 44777888888888888 8888887777888888888888885 88888777788889999999999998877654 458
Q ss_pred CCccEEEccCCCcccccC-hHHHHHHHhhc
Q psy16571 82 PELRTIDIAENPIECGCN-ILWLREMLVRR 110 (150)
Q Consensus 82 ~~L~~L~l~~N~~~c~c~-~~~l~~~~~~~ 110 (150)
++|+.|++++|+|.|+|. +.++..|....
T Consensus 205 ~~L~~L~l~~N~~~~~~~~l~~l~~~~n~~ 234 (272)
T 3rfs_A 205 TSLQYIWLHDNPWDCTCPGIRYLSEWINKH 234 (272)
T ss_dssp TTCCEEECCSSCBCCCTTTTHHHHHHHHHT
T ss_pred cCCCEEEccCCCccccCcHHHHHHHHHHhC
Confidence 999999999999999996 67777776543
No 31
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.66 E-value=7.7e-16 Score=117.72 Aligned_cols=117 Identities=23% Similarity=0.368 Sum_probs=95.8
Q ss_pred CccccCccccceeccCCCcCcc-cccCcccCCCCCCCEEeCCCCCCCCccchhhcCCCCCCCeEecCCCCccccCcC-cC
Q psy16571 2 EKEVKGLSYLKRLEITGASNLT-RVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSES-ML 79 (150)
Q Consensus 2 p~~f~~l~~L~~L~l~~n~~l~-~i~~~~~~~l~~L~~l~l~~n~~l~~~~~~~~~~l~~L~~l~l~~n~l~~lp~~-~~ 79 (150)
|..|.++++|++|++++| .+. ...+..+..+++|+.|++++|. +..+.+..|..+++|+.|++++|.++.++.. +.
T Consensus 438 ~~~~~~l~~L~~L~l~~n-~l~~~~~p~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 515 (570)
T 2z63_A 438 NGIFNGLSSLEVLKMAGN-SFQENFLPDIFTELRNLTFLDLSQCQ-LEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFD 515 (570)
T ss_dssp TTTTTTCTTCCEEECTTC-EEGGGEECSCCTTCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTT
T ss_pred hhhhhcCCcCcEEECcCC-cCccccchhhhhcccCCCEEECCCCc-cccCChhhhhcccCCCEEeCCCCcCCCCCHHHhh
Confidence 456778888888888888 775 3334578889999999999996 9988888889999999999999999988765 45
Q ss_pred CCCCccEEEccCCCcccccChHHHH-HHHhhcC---CCCeeeCCC
Q psy16571 80 AWPELRTIDIAENPIECGCNILWLR-EMLVRRN---TSAVFCNSP 120 (150)
Q Consensus 80 ~~~~L~~L~l~~N~~~c~c~~~~l~-~~~~~~~---~~~~~C~~~ 120 (150)
.+++|+.|++++|+|.|+|...|+. .|+.... ....+|++|
T Consensus 516 ~l~~L~~L~l~~N~~~~~~~~~~~~~~wl~~~~~~~~~~~~C~~~ 560 (570)
T 2z63_A 516 RLTSLQKIWLHTNPWDCSCPRIDYLSRWLNKNSQKEQGSAKCSGS 560 (570)
T ss_dssp TCTTCCEEECCSSCBCCCTTTTHHHHHHHHHTGGGEESCCBBTTT
T ss_pred cccCCcEEEecCCcccCCCcchHHHHHHHHhccccCCCchhhCCC
Confidence 6899999999999999999988776 8887652 222299887
No 32
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.65 E-value=1.4e-16 Score=115.75 Aligned_cols=73 Identities=23% Similarity=0.434 Sum_probs=61.1
Q ss_pred cCCCCCCCeEecCCCCccccCcCc-CCCCCccEEEccCCCcccccC-hHHHHHHHhhcC---CCCeeeCCCccccCcccc
Q psy16571 55 LVGLPNLYHLNLKENAFTSFSESM-LAWPELRTIDIAENPIECGCN-ILWLREMLVRRN---TSAVFCNSPAPLKYKSLI 129 (150)
Q Consensus 55 ~~~l~~L~~l~l~~n~l~~lp~~~-~~~~~L~~L~l~~N~~~c~c~-~~~l~~~~~~~~---~~~~~C~~~~~l~~~~~~ 129 (150)
+..+++|+.|++++|.++.+|..+ ..+++|+.|++++|+|.|+|. +.|+..|..... ...+.|++| |+++.
T Consensus 273 l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~~~~~l~~l~~~~~~~~~~~~~~~~C~~p----~~~l~ 348 (353)
T 2z80_A 273 LNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNKNSQKEQGSAKCSGS----GKPVR 348 (353)
T ss_dssp HHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHHHHHHHHHHHHHTTTTEESCCBBTTT----CCBGG
T ss_pred HhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccCcCCCcHHHHHHHHhccccCCCCcccCCC----CCcce
Confidence 456789999999999999999886 468999999999999999996 889999998764 347899987 55555
Q ss_pred cc
Q psy16571 130 SL 131 (150)
Q Consensus 130 ~~ 131 (150)
++
T Consensus 349 ~~ 350 (353)
T 2z80_A 349 SI 350 (353)
T ss_dssp GC
T ss_pred ee
Confidence 44
No 33
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.62 E-value=3.6e-15 Score=113.69 Aligned_cols=93 Identities=23% Similarity=0.387 Sum_probs=71.4
Q ss_pred CCCCCCEEeCCCCCCCCccchhhcCCCCCCCeEecCCCCccccCcC-cCCCCCccEEEccCCCcccccC-hHHHHHHHhh
Q psy16571 32 DNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSES-MLAWPELRTIDIAENPIECGCN-ILWLREMLVR 109 (150)
Q Consensus 32 ~l~~L~~l~l~~n~~l~~~~~~~~~~l~~L~~l~l~~n~l~~lp~~-~~~~~~L~~L~l~~N~~~c~c~-~~~l~~~~~~ 109 (150)
.+++|+.|++++|. ++.++.. ..+++|+.|++++|.++.+++. +..+++|+.|++++|+|.|+|. +.|+..|+..
T Consensus 449 ~l~~L~~L~Ls~N~-l~~ip~~--~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~~~~l~~~l~~ 525 (549)
T 2z81_A 449 FLPRLQELYISRNK-LKTLPDA--SLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNK 525 (549)
T ss_dssp CCTTCCEEECCSSC-CSSCCCG--GGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHHHHHHHHHHHHH
T ss_pred cCChhcEEECCCCc-cCcCCCc--ccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCccHHHHHHHHHh
Confidence 56677777777775 7766653 3578888888888888877665 5568999999999999999999 5788899876
Q ss_pred cC---CCCeeeCCCccccCcccccc
Q psy16571 110 RN---TSAVFCNSPAPLKYKSLISL 131 (150)
Q Consensus 110 ~~---~~~~~C~~~~~l~~~~~~~~ 131 (150)
.. ...+.|..| |+++.++
T Consensus 526 ~~~~~~~~~~C~~~----~~~~~~~ 546 (549)
T 2z81_A 526 NSQKEQGSAKCSGS----GKPVRSI 546 (549)
T ss_dssp CTTTEESCCBBTTT----CCBGGGC
T ss_pred cccccCCCCeECCC----Ccchhhc
Confidence 53 467889887 5555553
No 34
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.61 E-value=4.2e-15 Score=102.22 Aligned_cols=93 Identities=20% Similarity=0.277 Sum_probs=83.4
Q ss_pred CccccCccccceeccCCCcCcccccCcccCCCCCCCEEeCCCCCCCCccchhhcCCCCCCCeEecCCCCccccCcCcCCC
Q psy16571 2 EKEVKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESMLAW 81 (150)
Q Consensus 2 p~~f~~l~~L~~L~l~~n~~l~~i~~~~~~~l~~L~~l~l~~n~~l~~~~~~~~~~l~~L~~l~l~~n~l~~lp~~~~~~ 81 (150)
|..|.++++|+.|++++| .++.+++..|..+++|+.|++++|. ++.+++..|..+++|+.|++++|.++.+|..+..+
T Consensus 57 ~~~~~~l~~L~~L~L~~N-~l~~i~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l 134 (229)
T 3e6j_A 57 PGVFDSLINLKELYLGSN-QLGALPVGVFDSLTQLTVLDLGTNQ-LTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERL 134 (229)
T ss_dssp TTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCSCCTTGGGC
T ss_pred HHHhhCccCCcEEECCCC-CCCCcChhhcccCCCcCEEECCCCc-CCccChhHhCcchhhCeEeccCCcccccCcccccC
Confidence 566888999999999999 8999988888999999999999996 99998888888999999999999999999888889
Q ss_pred CCccEEEccCCCccc
Q psy16571 82 PELRTIDIAENPIEC 96 (150)
Q Consensus 82 ~~L~~L~l~~N~~~c 96 (150)
++|+.|++++|.+.-
T Consensus 135 ~~L~~L~L~~N~l~~ 149 (229)
T 3e6j_A 135 THLTHLALDQNQLKS 149 (229)
T ss_dssp TTCSEEECCSSCCCC
T ss_pred CCCCEEECCCCcCCc
Confidence 999999999998874
No 35
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.58 E-value=1.4e-14 Score=99.06 Aligned_cols=93 Identities=17% Similarity=0.290 Sum_probs=74.8
Q ss_pred CccccCccccceeccCCCcCcccccCcccCCCCCCCEEeCCCCCCCCccchhhcCCCCCCCeEecCCCCccccCcC-cCC
Q psy16571 2 EKEVKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSES-MLA 80 (150)
Q Consensus 2 p~~f~~l~~L~~L~l~~n~~l~~i~~~~~~~l~~L~~l~l~~n~~l~~~~~~~~~~l~~L~~l~l~~n~l~~lp~~-~~~ 80 (150)
+..|.++++|+.|++++| .++.+.+..|.++++|+.|++++|. ++.+++..|..+++|+.|+|++|.++.++.. +..
T Consensus 49 ~~~~~~l~~L~~L~Ls~N-~i~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~ 126 (220)
T 2v9t_B 49 PGAFSPYKKLRRIDLSNN-QISELAPDAFQGLRSLNSLVLYGNK-ITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQD 126 (220)
T ss_dssp TTSSTTCTTCCEEECCSS-CCCEECTTTTTTCSSCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred HhHhhCCCCCCEEECCCC-cCCCcCHHHhhCCcCCCEEECCCCc-CCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCC
Confidence 346778888888888888 8888877788888888888888885 8888887788888888888888888877554 445
Q ss_pred CCCccEEEccCCCccc
Q psy16571 81 WPELRTIDIAENPIEC 96 (150)
Q Consensus 81 ~~~L~~L~l~~N~~~c 96 (150)
+++|+.|++++|.+.-
T Consensus 127 l~~L~~L~L~~N~l~~ 142 (220)
T 2v9t_B 127 LHNLNLLSLYDNKLQT 142 (220)
T ss_dssp CTTCCEEECCSSCCSC
T ss_pred CCCCCEEECCCCcCCE
Confidence 7888888888887764
No 36
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.55 E-value=3.4e-14 Score=97.16 Aligned_cols=93 Identities=23% Similarity=0.412 Sum_probs=82.8
Q ss_pred ccccCccccceeccCCCcCcccccCcccCCCCCCCEEeCCCCCCCCccchhhcCCCCCCCeEecCCCCccccC-cCcCCC
Q psy16571 3 KEVKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFS-ESMLAW 81 (150)
Q Consensus 3 ~~f~~l~~L~~L~l~~n~~l~~i~~~~~~~l~~L~~l~l~~n~~l~~~~~~~~~~l~~L~~l~l~~n~l~~lp-~~~~~~ 81 (150)
..|.++++|+.|++++| .++.+++..|..+++|+.|++++|. ++.+++..|..+++|+.|+|++|.++.++ ..+..+
T Consensus 51 ~~~~~l~~L~~L~L~~N-~i~~i~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l 128 (220)
T 2v70_A 51 GIFKKLPQLRKINFSNN-KITDIEEGAFEGASGVNEILLTSNR-LENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGL 128 (220)
T ss_dssp CCGGGCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSC-CCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTC
T ss_pred hhhccCCCCCEEECCCC-cCCEECHHHhCCCCCCCEEECCCCc-cCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCC
Confidence 45888999999999999 9999998899999999999999996 99999988999999999999999999875 456668
Q ss_pred CCccEEEccCCCcccc
Q psy16571 82 PELRTIDIAENPIECG 97 (150)
Q Consensus 82 ~~L~~L~l~~N~~~c~ 97 (150)
++|+.|++++|.+.-.
T Consensus 129 ~~L~~L~L~~N~l~~~ 144 (220)
T 2v70_A 129 SSVRLLSLYDNQITTV 144 (220)
T ss_dssp TTCSEEECTTSCCCCB
T ss_pred ccCCEEECCCCcCCEE
Confidence 9999999999988653
No 37
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.55 E-value=2.1e-14 Score=110.63 Aligned_cols=93 Identities=23% Similarity=0.365 Sum_probs=75.3
Q ss_pred CccccCccccceeccCCCcCcccccCcccCCCCCCCEEeCCCCCCCCccchhhcCCCCCCCeEecCCCCccccCcC-cCC
Q psy16571 2 EKEVKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSES-MLA 80 (150)
Q Consensus 2 p~~f~~l~~L~~L~l~~n~~l~~i~~~~~~~l~~L~~l~l~~n~~l~~~~~~~~~~l~~L~~l~l~~n~l~~lp~~-~~~ 80 (150)
+.+|.++++|++|++++| .++.+++++|.++++|++|++++|+ ++.+++.+|.++++|+.|++++|.++.++.. +..
T Consensus 69 ~~~f~~l~~L~~L~Ls~N-~i~~i~~~~f~~L~~L~~L~Ls~N~-l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~ 146 (635)
T 4g8a_A 69 SYSFFSFPELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILTGNP-IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGH 146 (635)
T ss_dssp TTTTTTCTTCCEEECTTC-CCCEECTTTTTTCTTCCEEECTTCC-CCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTT
T ss_pred HHHHhCCCCCCEEECCCC-cCCCcChhHhcCCCCCCEEEccCCc-CCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhc
Confidence 467888888888888888 8888888888888888888888885 8888888888888888888888888887764 445
Q ss_pred CCCccEEEccCCCccc
Q psy16571 81 WPELRTIDIAENPIEC 96 (150)
Q Consensus 81 ~~~L~~L~l~~N~~~c 96 (150)
+++|+.|++++|.+..
T Consensus 147 L~~L~~L~Ls~N~l~~ 162 (635)
T 4g8a_A 147 LKTLKELNVAHNLIQS 162 (635)
T ss_dssp CTTCCEEECCSSCCCC
T ss_pred CcccCeeccccCcccc
Confidence 7778888888777643
No 38
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.52 E-value=9e-14 Score=96.61 Aligned_cols=89 Identities=24% Similarity=0.359 Sum_probs=42.7
Q ss_pred ccCccccceeccCCCcCcccccCcccCCCCCCCEEeCCCCCCCCccchhhcCCCCCCCeEecCCCCccccCcC-cCCCCC
Q psy16571 5 VKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSES-MLAWPE 83 (150)
Q Consensus 5 f~~l~~L~~L~l~~n~~l~~i~~~~~~~l~~L~~l~l~~n~~l~~~~~~~~~~l~~L~~l~l~~n~l~~lp~~-~~~~~~ 83 (150)
|.++++|++|++++| .++.+++..|..+++|+.|++++|. ++.+++..|..+++|+.|+|++|.++.++.. +..+++
T Consensus 79 ~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 156 (251)
T 3m19_A 79 FDDLTELGTLGLANN-QLASLPLGVFDHLTQLDKLYLGGNQ-LKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTN 156 (251)
T ss_dssp TTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred hccCCcCCEEECCCC-cccccChhHhcccCCCCEEEcCCCc-CCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcC
Confidence 444444444444444 4444444444444444444444443 4444444444455555555555555544442 233455
Q ss_pred ccEEEccCCCcc
Q psy16571 84 LRTIDIAENPIE 95 (150)
Q Consensus 84 L~~L~l~~N~~~ 95 (150)
|+.|++++|.+.
T Consensus 157 L~~L~L~~N~l~ 168 (251)
T 3m19_A 157 LQTLSLSTNQLQ 168 (251)
T ss_dssp CCEEECCSSCCS
T ss_pred CCEEECCCCcCC
Confidence 555555555544
No 39
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.52 E-value=1.1e-13 Score=93.47 Aligned_cols=92 Identities=22% Similarity=0.359 Sum_probs=73.2
Q ss_pred ccccCccccceeccCCCcCcccccCcccCCCCCCCEEeCCCCCCCCccchhhcCCCCCCCeEecCCCCccccCcCc-CCC
Q psy16571 3 KEVKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESM-LAW 81 (150)
Q Consensus 3 ~~f~~l~~L~~L~l~~n~~l~~i~~~~~~~l~~L~~l~l~~n~~l~~~~~~~~~~l~~L~~l~l~~n~l~~lp~~~-~~~ 81 (150)
..|.++++|++|++++| .++.+++..|..+++|+.|++++|. ++.+++..|..+++|+.|++++|.++.++... ..+
T Consensus 46 ~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l 123 (208)
T 2o6s_A 46 GVFDELTSLTQLYLGGN-KLQSLPNGVFNKLTSLTYLNLSTNQ-LQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKL 123 (208)
T ss_dssp TTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred hhhcccccCcEEECCCC-ccCccChhhcCCCCCcCEEECCCCc-CCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccC
Confidence 45777888888888888 8888887777888888888888885 88887777778888888888888888777654 457
Q ss_pred CCccEEEccCCCccc
Q psy16571 82 PELRTIDIAENPIEC 96 (150)
Q Consensus 82 ~~L~~L~l~~N~~~c 96 (150)
++|+.|++++|.+.-
T Consensus 124 ~~L~~L~l~~N~l~~ 138 (208)
T 2o6s_A 124 TQLKDLRLYQNQLKS 138 (208)
T ss_dssp TTCCEEECCSSCCSC
T ss_pred CcCCEEECCCCccce
Confidence 888888888887763
No 40
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.50 E-value=1.6e-13 Score=97.47 Aligned_cols=93 Identities=27% Similarity=0.310 Sum_probs=82.8
Q ss_pred CccccCccccceeccCCCcCcccccCcccCCCCCCCEEeCCCCCCCCccchhhcCCCCCCCeEecCCCCccccCcCcCC-
Q psy16571 2 EKEVKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESMLA- 80 (150)
Q Consensus 2 p~~f~~l~~L~~L~l~~n~~l~~i~~~~~~~l~~L~~l~l~~n~~l~~~~~~~~~~l~~L~~l~l~~n~l~~lp~~~~~- 80 (150)
|..+.++++|++|++++| .++.+++..|..+++|+.|++++|. ++.+++..|..+++|+.|+|++|.++.+|..++.
T Consensus 93 ~~~~~~l~~L~~L~l~~N-~l~~l~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~ 170 (290)
T 1p9a_G 93 PLLGQTLPALTVLDVSFN-RLTSLPLGALRGLGELQELYLKGNE-LKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNG 170 (290)
T ss_dssp CCCTTTCTTCCEEECCSS-CCCCCCSSTTTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTT
T ss_pred chhhccCCCCCEEECCCC-cCcccCHHHHcCCCCCCEEECCCCC-CCccChhhcccccCCCEEECCCCcCCccCHHHhcC
Confidence 456778889999999999 9999998889999999999999996 9999988888899999999999999999887654
Q ss_pred CCCccEEEccCCCccc
Q psy16571 81 WPELRTIDIAENPIEC 96 (150)
Q Consensus 81 ~~~L~~L~l~~N~~~c 96 (150)
+++|+.|++++|.+.-
T Consensus 171 l~~L~~L~L~~N~l~~ 186 (290)
T 1p9a_G 171 LENLDTLLLQENSLYT 186 (290)
T ss_dssp CTTCCEEECCSSCCCC
T ss_pred cCCCCEEECCCCcCCc
Confidence 8999999999998873
No 41
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.48 E-value=2.7e-14 Score=104.95 Aligned_cols=114 Identities=18% Similarity=0.250 Sum_probs=67.8
Q ss_pred ccccCccccceeccCCCcCcccccCcccCCCCCCCEEeCCCCCCCCccchhhcCCCCCCCeEecCCCCccccCcCcCCCC
Q psy16571 3 KEVKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESMLAWP 82 (150)
Q Consensus 3 ~~f~~l~~L~~L~l~~n~~l~~i~~~~~~~l~~L~~l~l~~n~~l~~~~~~~~~~l~~L~~l~l~~n~l~~lp~~~~~~~ 82 (150)
..|.++++|+.|++++| .++.++. .+..+++|+.|++++|. +..+++. +..+++|+.|++++|.++.++ +..++
T Consensus 266 ~~~~~l~~L~~L~L~~n-~l~~~~~-~~~~l~~L~~L~L~~n~-l~~~~~~-~~~l~~L~~L~L~~N~i~~~~--~~~~~ 339 (390)
T 3o6n_A 266 HPFVKMQRLERLYISNN-RLVALNL-YGQPIPTLKVLDLSHNH-LLHVERN-QPQFDRLENLYLDHNSIVTLK--LSTHH 339 (390)
T ss_dssp GGGTTCSSCCEEECCSS-CCCEEEC-SSSCCTTCCEEECCSSC-CCCCGGG-HHHHTTCSEEECCSSCCCCCC--CCTTC
T ss_pred hHccccccCCEEECCCC-cCcccCc-ccCCCCCCCEEECCCCc-ceecCcc-ccccCcCCEEECCCCccceeC--chhhc
Confidence 34445555555555555 5555443 23345555555555553 5554433 234556666666666666554 34477
Q ss_pred CccEEEccCCCcccccChHHHHHHHhhc-CCCCeeeCCCcc
Q psy16571 83 ELRTIDIAENPIECGCNILWLREMLVRR-NTSAVFCNSPAP 122 (150)
Q Consensus 83 ~L~~L~l~~N~~~c~c~~~~l~~~~~~~-~~~~~~C~~~~~ 122 (150)
+|+.|++++|+|.|+|...|+..+.+.. ......|..+..
T Consensus 340 ~L~~L~l~~N~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~ 380 (390)
T 3o6n_A 340 TLKNLTLSHNDWDCNSLRALFRNVARPAVDDADQHCKIDYQ 380 (390)
T ss_dssp CCSEEECCSSCEEHHHHHHHTTTCCTTTBCCCCSCCCTTCE
T ss_pred cCCEEEcCCCCccchhHHHHHHHHHhhcccccCceeccccc
Confidence 8999999999999999887777655433 244556765543
No 42
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.45 E-value=4.5e-13 Score=97.73 Aligned_cols=93 Identities=23% Similarity=0.257 Sum_probs=80.2
Q ss_pred Ccccc-CccccceeccCCCcCcccccCcccCCCCCCCEEeCCCCCCCCccchhhcCCCCCCCeEecCCCCccccCc-CcC
Q psy16571 2 EKEVK-GLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSE-SML 79 (150)
Q Consensus 2 p~~f~-~l~~L~~L~l~~n~~l~~i~~~~~~~l~~L~~l~l~~n~~l~~~~~~~~~~l~~L~~l~l~~n~l~~lp~-~~~ 79 (150)
+..|. ++.+|+.|++++| .++.+++.+|..+++|+.|++++|. ++.+++..|..+++|+.|+|++|.+..++. .+.
T Consensus 56 ~~~~~~~l~~L~~L~L~~N-~i~~i~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~ 133 (361)
T 2xot_A 56 AEWTPTRLTNLHSLLLSHN-HLNFISSEAFVPVPNLRYLDLSSNH-LHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFE 133 (361)
T ss_dssp TTSSSSCCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSCCCEECTTTTT
T ss_pred hhhhhhcccccCEEECCCC-cCCccChhhccCCCCCCEEECCCCc-CCcCCHHHhCCCcCCCEEECCCCcccEECHHHhC
Confidence 34566 8899999999999 9999998889999999999999996 999988888899999999999999998755 455
Q ss_pred CCCCccEEEccCCCccc
Q psy16571 80 AWPELRTIDIAENPIEC 96 (150)
Q Consensus 80 ~~~~L~~L~l~~N~~~c 96 (150)
.+++|+.|+|++|.+..
T Consensus 134 ~l~~L~~L~L~~N~l~~ 150 (361)
T 2xot_A 134 DMAQLQKLYLSQNQISR 150 (361)
T ss_dssp TCTTCCEEECCSSCCCS
T ss_pred CcccCCEEECCCCcCCe
Confidence 68999999999998764
No 43
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.45 E-value=6.9e-13 Score=93.04 Aligned_cols=70 Identities=29% Similarity=0.372 Sum_probs=34.0
Q ss_pred cccCccccceeccCCCcCcccccCcccCCCCCCCEEeCCCCCCCCccchhhcCCCCCCCeEecCCCCccccC
Q psy16571 4 EVKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFS 75 (150)
Q Consensus 4 ~f~~l~~L~~L~l~~n~~l~~i~~~~~~~l~~L~~l~l~~n~~l~~~~~~~~~~l~~L~~l~l~~n~l~~lp 75 (150)
+|.++++|++|++++| .++.+++..|..+++|+.|++++|. +..+++..|..+++|+.|++++|.++.++
T Consensus 56 ~~~~l~~L~~L~l~~n-~l~~i~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 125 (270)
T 2o6q_A 56 AFHRLTKLRLLYLNDN-KLQTLPAGIFKELKNLETLWVTDNK-LQALPIGVFDQLVNLAELRLDRNQLKSLP 125 (270)
T ss_dssp SSSSCTTCCEEECCSS-CCSCCCTTTTSSCTTCCEEECCSSC-CCCCCTTTTTTCSSCCEEECCSSCCCCCC
T ss_pred HhcCCCCCCEEECCCC-ccCeeChhhhcCCCCCCEEECCCCc-CCcCCHhHcccccCCCEEECCCCccCeeC
Confidence 4445555555555555 5555554444445555555555553 44444444444444444444444444433
No 44
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.44 E-value=7.9e-13 Score=92.89 Aligned_cols=91 Identities=25% Similarity=0.375 Sum_probs=56.0
Q ss_pred cccCccccceeccCCCcCcccccCcccCCCCCCCEEeCCCCCCCCccchhhcCCCCCCCeEecCCCCccccCcCc-CCCC
Q psy16571 4 EVKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESM-LAWP 82 (150)
Q Consensus 4 ~f~~l~~L~~L~l~~n~~l~~i~~~~~~~l~~L~~l~l~~n~~l~~~~~~~~~~l~~L~~l~l~~n~l~~lp~~~-~~~~ 82 (150)
.|.++++|++|++++| .++.+++..|..+++|+.|++++|. ++.+++..|..+++|+.|++++|.++.++... ..++
T Consensus 104 ~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~ 181 (272)
T 3rfs_A 104 VFDKLTNLKELVLVEN-QLQSLPDGVFDKLTNLTYLNLAHNQ-LQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLT 181 (272)
T ss_dssp TTTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred HhcCCcCCCEEECCCC-cCCccCHHHhccCCCCCEEECCCCc-cCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCc
Confidence 3555666666666666 6666665556666666666666664 66666555566666666666666666655543 3356
Q ss_pred CccEEEccCCCccc
Q psy16571 83 ELRTIDIAENPIEC 96 (150)
Q Consensus 83 ~L~~L~l~~N~~~c 96 (150)
+|+.|++++|.+..
T Consensus 182 ~L~~L~L~~N~l~~ 195 (272)
T 3rfs_A 182 QLKDLRLYQNQLKS 195 (272)
T ss_dssp TCCEEECCSSCCSC
T ss_pred cCCEEECCCCcCCc
Confidence 66666666666553
No 45
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.43 E-value=3.7e-13 Score=86.36 Aligned_cols=90 Identities=23% Similarity=0.259 Sum_probs=52.7
Q ss_pred ccccCccccceeccCCCcCcccccCcccCCCCCCCEEeCCCCCCCCccchhhcCCCCCCCeEecCCCCccccC--cCcCC
Q psy16571 3 KEVKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFS--ESMLA 80 (150)
Q Consensus 3 ~~f~~l~~L~~L~l~~n~~l~~i~~~~~~~l~~L~~l~l~~n~~l~~~~~~~~~~l~~L~~l~l~~n~l~~lp--~~~~~ 80 (150)
..|..+++|+.|++++| .++.+ ..+..+++|+.+++++|. ++...+..+..+++|+.|++++|.++.++ ..+..
T Consensus 36 ~~~~~l~~L~~L~l~~n-~l~~~--~~~~~l~~L~~L~Ls~n~-i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~ 111 (149)
T 2je0_A 36 GLTDEFEELEFLSTINV-GLTSI--ANLPKLNKLKKLELSDNR-VSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKK 111 (149)
T ss_dssp SCCTTCTTCCEEECTTS-CCCCC--TTCCCCTTCCEEECCSSC-CCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGG
T ss_pred HHHhhcCCCcEEECcCC-CCCCc--hhhhcCCCCCEEECCCCc-ccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhh
Confidence 34555666666666666 66655 345566666666666664 65533444444566666666666666543 44555
Q ss_pred CCCccEEEccCCCccc
Q psy16571 81 WPELRTIDIAENPIEC 96 (150)
Q Consensus 81 ~~~L~~L~l~~N~~~c 96 (150)
+++|+.|++++|++.-
T Consensus 112 l~~L~~L~l~~N~l~~ 127 (149)
T 2je0_A 112 LENLKSLDLFNCEVTN 127 (149)
T ss_dssp CTTCCEEECTTCGGGG
T ss_pred CCCCCEEeCcCCcccc
Confidence 6666666666666543
No 46
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.41 E-value=1.2e-12 Score=92.26 Aligned_cols=90 Identities=27% Similarity=0.388 Sum_probs=48.5
Q ss_pred ccccCccccceeccCCCcCcccccCcccCCCCCCCEEeCCCCCCCCccchhhcCCCCCCCeEecCCCCccccCcC-cCCC
Q psy16571 3 KEVKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSES-MLAW 81 (150)
Q Consensus 3 ~~f~~l~~L~~L~l~~n~~l~~i~~~~~~~l~~L~~l~l~~n~~l~~~~~~~~~~l~~L~~l~l~~n~l~~lp~~-~~~~ 81 (150)
..|.++++|++|++++| .++.+++..|..+++|+.|++++|. ++.+++..|..+++|+.|++++|.++.++.. +..+
T Consensus 99 ~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l 176 (285)
T 1ozn_A 99 ATFHGLGRLHTLHLDRC-GLQELGPGLFRGLAALQYLYLQDNA-LQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGL 176 (285)
T ss_dssp TTTTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTC
T ss_pred HHhcCCcCCCEEECCCC-cCCEECHhHhhCCcCCCEEECCCCc-ccccCHhHhccCCCccEEECCCCcccccCHHHhcCc
Confidence 34555555666666655 5555555555555555555555553 5555555455555555555555555555443 2334
Q ss_pred CCccEEEccCCCc
Q psy16571 82 PELRTIDIAENPI 94 (150)
Q Consensus 82 ~~L~~L~l~~N~~ 94 (150)
++|+.|++++|.+
T Consensus 177 ~~L~~L~l~~n~l 189 (285)
T 1ozn_A 177 HSLDRLLLHQNRV 189 (285)
T ss_dssp TTCCEEECCSSCC
T ss_pred cccCEEECCCCcc
Confidence 4555555555443
No 47
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.41 E-value=5.8e-13 Score=95.48 Aligned_cols=93 Identities=17% Similarity=0.258 Sum_probs=76.3
Q ss_pred CccccceeccCCCcCcccccCcccCCCCCCCEEeCCCCCCCCccchhhcCCCCCCCeEecCCCCccccCcCcCCCCCccE
Q psy16571 7 GLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESMLAWPELRT 86 (150)
Q Consensus 7 ~l~~L~~L~l~~n~~l~~i~~~~~~~l~~L~~l~l~~n~~l~~~~~~~~~~l~~L~~l~l~~n~l~~lp~~~~~~~~L~~ 86 (150)
.+++|++|++++| .++.++.. ..+++|+.|++++|. ++.+++. +..+++|+.|++++|.++.+|..+..+++|+.
T Consensus 167 ~l~~L~~L~L~~N-~l~~~~~~--~~l~~L~~L~Ls~N~-l~~l~~~-~~~l~~L~~L~L~~N~l~~l~~~~~~l~~L~~ 241 (317)
T 3o53_A 167 SSDTLEHLNLQYN-FIYDVKGQ--VVFAKLKTLDLSSNK-LAFMGPE-FQSAAGVTWISLRNNKLVLIEKALRFSQNLEH 241 (317)
T ss_dssp GTTTCCEEECTTS-CCCEEECC--CCCTTCCEEECCSSC-CCEECGG-GGGGTTCSEEECTTSCCCEECTTCCCCTTCCE
T ss_pred ccCcCCEEECCCC-cCcccccc--cccccCCEEECCCCc-CCcchhh-hcccCcccEEECcCCcccchhhHhhcCCCCCE
Confidence 5667777777777 77777542 347888888888885 8888776 77889999999999999999988888999999
Q ss_pred EEccCCCcccccChHHHH
Q psy16571 87 IDIAENPIECGCNILWLR 104 (150)
Q Consensus 87 L~l~~N~~~c~c~~~~l~ 104 (150)
|++++|++.|+|...|+.
T Consensus 242 L~l~~N~~~~~~~~~~~~ 259 (317)
T 3o53_A 242 FDLRGNGFHCGTLRDFFS 259 (317)
T ss_dssp EECTTCCCBHHHHHHHHH
T ss_pred EEccCCCccCcCHHHHHh
Confidence 999999999987766654
No 48
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.40 E-value=1.4e-12 Score=87.47 Aligned_cols=85 Identities=18% Similarity=0.286 Sum_probs=77.5
Q ss_pred cccceeccCCCcCcccccCcccCCCCCCCEEeCCCCCCCCccchhhcCCCCCCCeEecCCCCccccCcC-cCCCCCccEE
Q psy16571 9 SYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSES-MLAWPELRTI 87 (150)
Q Consensus 9 ~~L~~L~l~~n~~l~~i~~~~~~~l~~L~~l~l~~n~~l~~~~~~~~~~l~~L~~l~l~~n~l~~lp~~-~~~~~~L~~L 87 (150)
.+|++|++++| .++.++ ..|..+++|+.|++++|. ++.+++..|..+++|+.|+|++|.++.++.. +..+++|+.|
T Consensus 31 ~~l~~L~L~~n-~i~~ip-~~~~~l~~L~~L~Ls~N~-i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L 107 (193)
T 2wfh_A 31 RDVTELYLDGN-QFTLVP-KELSNYKHLTLIDLSNNR-ISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLL 107 (193)
T ss_dssp TTCCEEECCSS-CCCSCC-GGGGGCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEE
T ss_pred CCCCEEECCCC-cCchhH-HHhhcccCCCEEECCCCc-CCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEE
Confidence 47899999999 999888 589999999999999996 9999999999999999999999999998875 5568999999
Q ss_pred EccCCCccc
Q psy16571 88 DIAENPIEC 96 (150)
Q Consensus 88 ~l~~N~~~c 96 (150)
++++|.+..
T Consensus 108 ~L~~N~l~~ 116 (193)
T 2wfh_A 108 SLHGNDISV 116 (193)
T ss_dssp ECCSSCCCB
T ss_pred ECCCCCCCe
Confidence 999999874
No 49
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.40 E-value=4.7e-13 Score=87.55 Aligned_cols=92 Identities=24% Similarity=0.248 Sum_probs=72.5
Q ss_pred CccccCccccceeccCCCcCcccccCcccCCCCCCCEEeCCCCCCCCccchhhcCCCCCCCeEecCCCCccccC--cCcC
Q psy16571 2 EKEVKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFS--ESML 79 (150)
Q Consensus 2 p~~f~~l~~L~~L~l~~n~~l~~i~~~~~~~l~~L~~l~l~~n~~l~~~~~~~~~~l~~L~~l~l~~n~l~~lp--~~~~ 79 (150)
|..|..+++|+.|++++| .++.+ ..+..+++|+.|++++|. +....+..+..+++|+.|++++|.++.++ ..+.
T Consensus 42 ~~~~~~l~~L~~L~l~~n-~l~~~--~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~ 117 (168)
T 2ell_A 42 EGLTAEFVNLEFLSLINV-GLISV--SNLPKLPKLKKLELSENR-IFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLK 117 (168)
T ss_dssp SSCCGGGGGCCEEEEESS-CCCCC--SSCCCCSSCCEEEEESCC-CCSCCCHHHHHCTTCCEEECBSSSCCSSGGGGGGS
T ss_pred HHHHHhCCCCCEEeCcCC-CCCCh--hhhccCCCCCEEECcCCc-CchHHHHHHhhCCCCCEEeccCCccCcchhHHHHh
Confidence 445677888888888888 78877 467888888888888886 87755555666888889999988888876 5666
Q ss_pred CCCCccEEEccCCCcccc
Q psy16571 80 AWPELRTIDIAENPIECG 97 (150)
Q Consensus 80 ~~~~L~~L~l~~N~~~c~ 97 (150)
.+++|+.|++++|++.-.
T Consensus 118 ~l~~L~~L~l~~N~l~~~ 135 (168)
T 2ell_A 118 KLECLKSLDLFNCEVTNL 135 (168)
T ss_dssp SCSCCCEEECCSSGGGTS
T ss_pred cCCCCCEEEeeCCcCcch
Confidence 788888999988887643
No 50
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.40 E-value=2.2e-12 Score=85.07 Aligned_cols=86 Identities=23% Similarity=0.390 Sum_probs=78.7
Q ss_pred cccceeccCCCcCcccccCcccCCCCCCCEEeCCCCCCCCccchhhcCCCCCCCeEecCCCCccccCcCc-CCCCCccEE
Q psy16571 9 SYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESM-LAWPELRTI 87 (150)
Q Consensus 9 ~~L~~L~l~~n~~l~~i~~~~~~~l~~L~~l~l~~n~~l~~~~~~~~~~l~~L~~l~l~~n~l~~lp~~~-~~~~~L~~L 87 (150)
++|+.|++++| .++.+++..|..+++|+.|++++|. ++.+++..|..+++|+.|++++|.++.++... ..+++|+.|
T Consensus 28 ~~l~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L 105 (177)
T 2o6r_A 28 SSATRLELESN-KLQSLPHGVFDKLTQLTKLSLSQNQ-IQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKEL 105 (177)
T ss_dssp TTCSEEECCSS-CCCCCCTTTTTTCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred CCCcEEEeCCC-cccEeCHHHhcCcccccEEECCCCc-ceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEE
Confidence 68999999999 9999998889999999999999996 99999888899999999999999999988865 468999999
Q ss_pred EccCCCccc
Q psy16571 88 DIAENPIEC 96 (150)
Q Consensus 88 ~l~~N~~~c 96 (150)
++++|.+.-
T Consensus 106 ~l~~N~l~~ 114 (177)
T 2o6r_A 106 ALDTNQLKS 114 (177)
T ss_dssp ECCSSCCSC
T ss_pred ECcCCcceE
Confidence 999999873
No 51
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.39 E-value=1.5e-12 Score=91.47 Aligned_cols=91 Identities=26% Similarity=0.351 Sum_probs=49.8
Q ss_pred cccCccccceeccCCCcCcccccCcccCCCCCCCEEeCCCCCCCCccchhhcCCCCCCCeEecCCCCccc--cCcCcCCC
Q psy16571 4 EVKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTS--FSESMLAW 81 (150)
Q Consensus 4 ~f~~l~~L~~L~l~~n~~l~~i~~~~~~~l~~L~~l~l~~n~~l~~~~~~~~~~l~~L~~l~l~~n~l~~--lp~~~~~~ 81 (150)
+|.++++|++|++++| .++.+++..|..+++|+.|++++|. +..+++..+..+++|+.|++++|.+.. +|..+..+
T Consensus 71 ~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l 148 (276)
T 2z62_A 71 AYQSLSHLSTLILTGN-PIQSLALGAFSGLSSLQKLVAVETN-LASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNL 148 (276)
T ss_dssp TTTTCTTCCEEECTTC-CCCEECTTTTTTCTTCCEEECTTSC-CCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGC
T ss_pred HccCCcCCCEEECCCC-ccCccChhhhcCCccccEEECCCCC-ccccCchhcccCCCCCEEECcCCccceecCchhhccC
Confidence 3444555555555555 5555544445555555555555553 555444445555666666666666654 34455556
Q ss_pred CCccEEEccCCCccc
Q psy16571 82 PELRTIDIAENPIEC 96 (150)
Q Consensus 82 ~~L~~L~l~~N~~~c 96 (150)
++|+.|++++|.+.-
T Consensus 149 ~~L~~L~Ls~N~l~~ 163 (276)
T 2z62_A 149 TNLEHLDLSSNKIQS 163 (276)
T ss_dssp TTCCEEECCSSCCCE
T ss_pred CCCCEEECCCCCCCc
Confidence 666677776666543
No 52
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.39 E-value=2.5e-12 Score=86.04 Aligned_cols=86 Identities=28% Similarity=0.433 Sum_probs=77.7
Q ss_pred ccceeccCCCcCcccccCc-ccCCCCCCCEEeCCCCCCCCccchhhcCCCCCCCeEecCCCCccccCcC-cCCCCCccEE
Q psy16571 10 YLKRLEITGASNLTRVRKG-AFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSES-MLAWPELRTI 87 (150)
Q Consensus 10 ~L~~L~l~~n~~l~~i~~~-~~~~l~~L~~l~l~~n~~l~~~~~~~~~~l~~L~~l~l~~n~l~~lp~~-~~~~~~L~~L 87 (150)
.|++|++++| .++.+++. .|..+++|+.|++++|. ++.+.+..|..+++|+.|+|++|.++.++.. +..+++|+.|
T Consensus 30 ~l~~L~l~~n-~i~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 107 (192)
T 1w8a_A 30 HTTELLLNDN-ELGRISSDGLFGRLPHLVKLELKRNQ-LTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTL 107 (192)
T ss_dssp TCSEEECCSC-CCCSBCCSCSGGGCTTCCEEECCSSC-CCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEE
T ss_pred CCCEEECCCC-cCCccCCccccccCCCCCEEECCCCC-CCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEE
Confidence 7899999999 99999874 58899999999999996 9999888899999999999999999988776 4568999999
Q ss_pred EccCCCcccc
Q psy16571 88 DIAENPIECG 97 (150)
Q Consensus 88 ~l~~N~~~c~ 97 (150)
++++|.+...
T Consensus 108 ~L~~N~l~~~ 117 (192)
T 1w8a_A 108 NLYDNQISCV 117 (192)
T ss_dssp ECCSSCCCEE
T ss_pred ECCCCcCCee
Confidence 9999998753
No 53
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.39 E-value=7.2e-13 Score=87.40 Aligned_cols=86 Identities=21% Similarity=0.328 Sum_probs=67.4
Q ss_pred ccceeccCCCcCcccccCcccCCCCCCCEEeCCCCCCCCccchhhcCCCCCCCeEecCCCCccccCc--CcCCCCCccEE
Q psy16571 10 YLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSE--SMLAWPELRTI 87 (150)
Q Consensus 10 ~L~~L~l~~n~~l~~i~~~~~~~l~~L~~l~l~~n~~l~~~~~~~~~~l~~L~~l~l~~n~l~~lp~--~~~~~~~L~~L 87 (150)
+|+.|++++| .++.+ ..|..+++|+.|++++|. ++.+++..|..+++|+.|++++|.+..+|. .+..+++|+.|
T Consensus 43 ~L~~L~Ls~N-~l~~~--~~l~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L 118 (176)
T 1a9n_A 43 QFDAIDFSDN-EIRKL--DGFPLLRRLKTLLVNNNR-ICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYL 118 (176)
T ss_dssp CCSEEECCSS-CCCEE--CCCCCCSSCCEEECCSSC-CCEECSCHHHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEE
T ss_pred CCCEEECCCC-CCCcc--cccccCCCCCEEECCCCc-ccccCcchhhcCCCCCEEECCCCcCCcchhhHhhhcCCCCCEE
Confidence 7888888888 88777 357778888888888885 888776666778888888888888887776 56667888888
Q ss_pred EccCCCcccccC
Q psy16571 88 DIAENPIECGCN 99 (150)
Q Consensus 88 ~l~~N~~~c~c~ 99 (150)
++++|++.....
T Consensus 119 ~l~~N~i~~~~~ 130 (176)
T 1a9n_A 119 CILRNPVTNKKH 130 (176)
T ss_dssp ECCSSGGGGSTT
T ss_pred EecCCCCCCcHh
Confidence 888888865544
No 54
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.37 E-value=2.7e-12 Score=95.78 Aligned_cols=93 Identities=22% Similarity=0.360 Sum_probs=82.0
Q ss_pred CccccCccccceeccCCCcCcccccCcccCCCCCCCEEeCCCCCCCCccchhhcCCCCCCCeEecCCCCcccc-CcCcCC
Q psy16571 2 EKEVKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSF-SESMLA 80 (150)
Q Consensus 2 p~~f~~l~~L~~L~l~~n~~l~~i~~~~~~~l~~L~~l~l~~n~~l~~~~~~~~~~l~~L~~l~l~~n~l~~l-p~~~~~ 80 (150)
|..|.++++|++|++++| .+..+++..|..+++|+.|++++|. ++.+++..|..+++|+.|++++|.++.+ |..+..
T Consensus 292 ~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 369 (455)
T 3v47_A 292 KSVFSHFTDLEQLTLAQN-EINKIDDNAFWGLTHLLKLNLSQNF-LGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLG 369 (455)
T ss_dssp TTTTTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSSC-CCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTT
T ss_pred hhhcccCCCCCEEECCCC-cccccChhHhcCcccCCEEECCCCc-cCCcChhHhcCcccCCEEECCCCcccccChhhccc
Confidence 456888899999999999 9999988889999999999999996 9998888889999999999999999977 556667
Q ss_pred CCCccEEEccCCCccc
Q psy16571 81 WPELRTIDIAENPIEC 96 (150)
Q Consensus 81 ~~~L~~L~l~~N~~~c 96 (150)
+++|+.|++++|.+..
T Consensus 370 l~~L~~L~L~~N~l~~ 385 (455)
T 3v47_A 370 LPNLKELALDTNQLKS 385 (455)
T ss_dssp CTTCCEEECCSSCCSC
T ss_pred cccccEEECCCCcccc
Confidence 8999999999998875
No 55
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.36 E-value=4.4e-12 Score=93.12 Aligned_cols=91 Identities=15% Similarity=0.238 Sum_probs=52.8
Q ss_pred ccccCccccceeccCCCcCcccccCcccCCCCCCCEEeCCCCCCCCccchhhcCCCCCCCeEecCCCCccccCcC-cCCC
Q psy16571 3 KEVKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSES-MLAW 81 (150)
Q Consensus 3 ~~f~~l~~L~~L~l~~n~~l~~i~~~~~~~l~~L~~l~l~~n~~l~~~~~~~~~~l~~L~~l~l~~n~l~~lp~~-~~~~ 81 (150)
.+|.++++|++|++++| .++.+++..|..+++|+.|++++|. ++.+++..|..+++|+.|++++|.+..++.. +..+
T Consensus 87 ~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~-l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 164 (390)
T 3o6n_A 87 YAFAYAHTIQKLYMGFN-AIRYLPPHVFQNVPLLTVLVLERND-LSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQAT 164 (390)
T ss_dssp TTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSC
T ss_pred hhccCCCCcCEEECCCC-CCCcCCHHHhcCCCCCCEEECCCCc-cCcCCHHHhcCCCCCcEEECCCCccCccChhhccCC
Confidence 34555566666666665 5665555555566666666666664 6655555555566666666666666555433 3345
Q ss_pred CCccEEEccCCCcc
Q psy16571 82 PELRTIDIAENPIE 95 (150)
Q Consensus 82 ~~L~~L~l~~N~~~ 95 (150)
++|+.|++++|.+.
T Consensus 165 ~~L~~L~l~~n~l~ 178 (390)
T 3o6n_A 165 TSLQNLQLSSNRLT 178 (390)
T ss_dssp TTCCEEECCSSCCS
T ss_pred CCCCEEECCCCcCC
Confidence 56666666666554
No 56
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.36 E-value=6.1e-13 Score=91.67 Aligned_cols=87 Identities=18% Similarity=0.317 Sum_probs=60.2
Q ss_pred ccccCccccceeccCCCcC-cccccCcccCCCCCCCEEeCCC-CCCCCccchhhcCCCCCCCeEecCCCCccccCcCcCC
Q psy16571 3 KEVKGLSYLKRLEITGASN-LTRVRKGAFADNLNLETLTLNK-NPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESMLA 80 (150)
Q Consensus 3 ~~f~~l~~L~~L~l~~n~~-l~~i~~~~~~~l~~L~~l~l~~-n~~l~~~~~~~~~~l~~L~~l~l~~n~l~~lp~~~~~ 80 (150)
.+|.++++|++|++++| . ++.+++.+|.++++|+.+++++ |. ++.+++..|..+++|+.|++++|.++.+|. +..
T Consensus 49 ~~~~~l~~L~~L~l~~n-~~l~~i~~~~f~~l~~L~~L~l~~~n~-l~~i~~~~f~~l~~L~~L~l~~n~l~~lp~-~~~ 125 (239)
T 2xwt_C 49 HAFSNLPNISRIYVSID-VTLQQLESHSFYNLSKVTHIEIRNTRN-LTYIDPDALKELPLLKFLGIFNTGLKMFPD-LTK 125 (239)
T ss_dssp TTTTTCTTCCEEEEECC-SSCCEECTTTEESCTTCCEEEEEEETT-CCEECTTSEECCTTCCEEEEEEECCCSCCC-CTT
T ss_pred HHccCCCCCcEEeCCCC-CCcceeCHhHcCCCcCCcEEECCCCCC-eeEcCHHHhCCCCCCCEEeCCCCCCccccc-ccc
Confidence 45777777777777777 5 7777777777777777777776 64 777777667777777777777776666664 444
Q ss_pred CCCcc---EEEccCC
Q psy16571 81 WPELR---TIDIAEN 92 (150)
Q Consensus 81 ~~~L~---~L~l~~N 92 (150)
+++|+ .|++++|
T Consensus 126 l~~L~~L~~L~l~~N 140 (239)
T 2xwt_C 126 VYSTDIFFILEITDN 140 (239)
T ss_dssp CCBCCSEEEEEEESC
T ss_pred ccccccccEEECCCC
Confidence 44444 6666665
No 57
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.36 E-value=3.7e-12 Score=98.21 Aligned_cols=89 Identities=21% Similarity=0.336 Sum_probs=44.7
Q ss_pred cccCccccceeccCCCcCcccccCcccCCCCCCCEEeCCCCCCCCccchhhcCCCCCCCeEecCCCCccccC-cCcCCCC
Q psy16571 4 EVKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFS-ESMLAWP 82 (150)
Q Consensus 4 ~f~~l~~L~~L~l~~n~~l~~i~~~~~~~l~~L~~l~l~~n~~l~~~~~~~~~~l~~L~~l~l~~n~l~~lp-~~~~~~~ 82 (150)
+|.++++|++|++++| .++.+++.+|..+++|+.|++++|. +..+.+..|..+++|+.|++++|.+..++ ..+..++
T Consensus 51 ~~~~l~~L~~L~Ls~n-~l~~i~~~~~~~l~~L~~L~Ls~n~-l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 128 (606)
T 3vq2_A 51 SFSNFSELQWLDLSRC-EIETIEDKAWHGLHHLSNLILTGNP-IQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLI 128 (606)
T ss_dssp TTTTCTTCCEEECTTC-CCCEECTTTTTTCTTCCEEECTTCC-CCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCT
T ss_pred hccCCccCcEEeCCCC-cccccCHHHhhchhhcCEeECCCCc-ccccChhhcCCcccCCEEEccCCccccccccccCCCC
Confidence 4555555555555555 5555555555555555555555553 55554444555555555555555554443 2233344
Q ss_pred CccEEEccCCCc
Q psy16571 83 ELRTIDIAENPI 94 (150)
Q Consensus 83 ~L~~L~l~~N~~ 94 (150)
+|+.|++++|.+
T Consensus 129 ~L~~L~L~~n~l 140 (606)
T 3vq2_A 129 TLKKLNVAHNFI 140 (606)
T ss_dssp TCCEEECCSSCC
T ss_pred CCCEEeCCCCcc
Confidence 444444444433
No 58
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.36 E-value=4.4e-12 Score=94.95 Aligned_cols=73 Identities=27% Similarity=0.356 Sum_probs=52.8
Q ss_pred CccccCccccceeccCCCcCcccccCcccCCCCCCCEEeCCCCCCCCccchhhcCCCCCCCeEecCCCCccccCc
Q psy16571 2 EKEVKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSE 76 (150)
Q Consensus 2 p~~f~~l~~L~~L~l~~n~~l~~i~~~~~~~l~~L~~l~l~~n~~l~~~~~~~~~~l~~L~~l~l~~n~l~~lp~ 76 (150)
+.+|.++++|+.|++++| .++.+++..|.++++|+.|++++|. ++.+++..|..+++|+.|+|++|.+..++.
T Consensus 92 ~~~~~~l~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 164 (452)
T 3zyi_A 92 ADTFRHLHHLEVLQLGRN-SIRQIEVGAFNGLASLNTLELFDNW-LTVIPSGAFEYLSKLRELWLRNNPIESIPS 164 (452)
T ss_dssp TTTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSC-CSBCCTTTSSSCTTCCEEECCSCCCCEECT
T ss_pred HHHcCCCCCCCEEECCCC-ccCCcChhhccCcccCCEEECCCCc-CCccChhhhcccCCCCEEECCCCCcceeCH
Confidence 456777777777777777 7777777777777777777777775 777777667777777777777777776655
No 59
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.36 E-value=3.3e-12 Score=92.65 Aligned_cols=88 Identities=20% Similarity=0.304 Sum_probs=65.6
Q ss_pred ccccCccccceeccCCCcCcccccCcccCCCCCCCEEeCCCCCCCCccchhhcCCCCCCCeEecCCCCccccCc--CcCC
Q psy16571 3 KEVKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSE--SMLA 80 (150)
Q Consensus 3 ~~f~~l~~L~~L~l~~n~~l~~i~~~~~~~l~~L~~l~l~~n~~l~~~~~~~~~~l~~L~~l~l~~n~l~~lp~--~~~~ 80 (150)
..|.++++|++|++++| .++.+++..|..+++|+.|++++|. ++.+++..|..+++|+.|++++|.++.+|. .+..
T Consensus 70 ~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~ 147 (353)
T 2z80_A 70 SDLQRCVNLQALVLTSN-GINTIEEDSFSSLGSLEHLDLSYNY-LSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSH 147 (353)
T ss_dssp TTTTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSSC-CSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTT
T ss_pred HHhccCCCCCEEECCCC-ccCccCHhhcCCCCCCCEEECCCCc-CCcCCHhHhCCCccCCEEECCCCCCcccCchhhhcc
Confidence 35777778888888887 7777777777778888888888885 777777767777888888888887777766 3444
Q ss_pred CCCccEEEccCC
Q psy16571 81 WPELRTIDIAEN 92 (150)
Q Consensus 81 ~~~L~~L~l~~N 92 (150)
+++|+.|++++|
T Consensus 148 l~~L~~L~l~~n 159 (353)
T 2z80_A 148 LTKLQILRVGNM 159 (353)
T ss_dssp CTTCCEEEEEES
T ss_pred CCCCcEEECCCC
Confidence 666777776666
No 60
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.35 E-value=1.7e-12 Score=98.32 Aligned_cols=92 Identities=17% Similarity=0.255 Sum_probs=72.9
Q ss_pred CccccceeccCCCcCcccccCcccCCCCCCCEEeCCCCCCCCccchhhcCCCCCCCeEecCCCCccccCcCcCCCCCccE
Q psy16571 7 GLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESMLAWPELRT 86 (150)
Q Consensus 7 ~l~~L~~L~l~~n~~l~~i~~~~~~~l~~L~~l~l~~n~~l~~~~~~~~~~l~~L~~l~l~~n~l~~lp~~~~~~~~L~~ 86 (150)
.+++|+.|++++| .++.++. ...+++|+.|++++|. ++.+++. |..+++|+.|++++|.++.+|..+..+++|+.
T Consensus 167 ~l~~L~~L~Ls~N-~l~~~~~--~~~l~~L~~L~Ls~N~-l~~~~~~-~~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~ 241 (487)
T 3oja_A 167 SSDTLEHLNLQYN-FIYDVKG--QVVFAKLKTLDLSSNK-LAFMGPE-FQSAAGVTWISLRNNKLVLIEKALRFSQNLEH 241 (487)
T ss_dssp GTTTCCEEECTTS-CCCEEEC--CCCCTTCCEEECCSSC-CCEECGG-GGGGTTCSEEECTTSCCCEECTTCCCCTTCCE
T ss_pred hCCcccEEecCCC-ccccccc--cccCCCCCEEECCCCC-CCCCCHh-HcCCCCccEEEecCCcCcccchhhccCCCCCE
Confidence 4566666677766 6666644 3347788888888885 8887776 67789999999999999999988888899999
Q ss_pred EEccCCCcccccChHHH
Q psy16571 87 IDIAENPIECGCNILWL 103 (150)
Q Consensus 87 L~l~~N~~~c~c~~~~l 103 (150)
|++++|++.|++-..|+
T Consensus 242 L~l~~N~l~c~~~~~~~ 258 (487)
T 3oja_A 242 FDLRGNGFHCGTLRDFF 258 (487)
T ss_dssp EECTTCCBCHHHHHHHH
T ss_pred EEcCCCCCcCcchHHHH
Confidence 99999999998765544
No 61
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.34 E-value=5.8e-12 Score=93.98 Aligned_cols=88 Identities=32% Similarity=0.433 Sum_probs=57.5
Q ss_pred CccccCccccceeccCCCcCcccccCcccCCCCCCCEEeCCCCCCCCccchhhcCCCCCCCeEecCCCCccccCcCcC-C
Q psy16571 2 EKEVKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESML-A 80 (150)
Q Consensus 2 p~~f~~l~~L~~L~l~~n~~l~~i~~~~~~~l~~L~~l~l~~n~~l~~~~~~~~~~l~~L~~l~l~~n~l~~lp~~~~-~ 80 (150)
+.+|.++++|++|++++| .++.+++..|.++++|+.|++++|. ++.+++..|..+++|+.|+|++|.+..++...+ .
T Consensus 81 ~~~~~~l~~L~~L~Ls~n-~i~~i~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~ 158 (440)
T 3zyj_A 81 VNSFKHLRHLEILQLSRN-HIRTIEIGAFNGLANLNTLELFDNR-LTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNR 158 (440)
T ss_dssp TTTTSSCSSCCEEECCSS-CCCEECGGGGTTCSSCCEEECCSSC-CSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTT
T ss_pred HHHhhCCCCCCEEECCCC-cCCccChhhccCCccCCEEECCCCc-CCeeCHhHhhccccCceeeCCCCcccccCHHHhhh
Confidence 345677777777777777 7777776677777777777777774 777776666777777777777777666655322 2
Q ss_pred CCCccEEEccC
Q psy16571 81 WPELRTIDIAE 91 (150)
Q Consensus 81 ~~~L~~L~l~~ 91 (150)
+++|+.|++++
T Consensus 159 l~~L~~L~l~~ 169 (440)
T 3zyj_A 159 IPSLRRLDLGE 169 (440)
T ss_dssp CTTCCEEECCC
T ss_pred CcccCEeCCCC
Confidence 44444444443
No 62
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.34 E-value=5.5e-12 Score=94.77 Aligned_cols=90 Identities=29% Similarity=0.483 Sum_probs=51.9
Q ss_pred ccccCccccceeccCCCcCcccccCcccCCCCCCCEEeCCCCCCCCccchhhcCCCCCCCeEecCCCCccccCc-CcCCC
Q psy16571 3 KEVKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSE-SMLAW 81 (150)
Q Consensus 3 ~~f~~l~~L~~L~l~~n~~l~~i~~~~~~~l~~L~~l~l~~n~~l~~~~~~~~~~l~~L~~l~l~~n~l~~lp~-~~~~~ 81 (150)
..|.++++|++|++++| .++.+.+..|..+++|+.|++++|. ++.+++..|..+++|+.|+|++|.+..++. .+..+
T Consensus 50 ~~~~~l~~L~~L~L~~n-~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l 127 (477)
T 2id5_A 50 DEFASFPHLEELELNEN-IVSAVEPGAFNNLFNLRTLGLRSNR-LKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDL 127 (477)
T ss_dssp TTTTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSSC-CCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTC
T ss_pred hHccCCCCCCEEECCCC-ccCEeChhhhhCCccCCEEECCCCc-CCccCcccccCCCCCCEEECCCCccccCChhHcccc
Confidence 45566666666666666 6666655566666666666666664 666665555556666666666666554433 23334
Q ss_pred CCccEEEccCCCc
Q psy16571 82 PELRTIDIAENPI 94 (150)
Q Consensus 82 ~~L~~L~l~~N~~ 94 (150)
++|+.|++++|.+
T Consensus 128 ~~L~~L~l~~n~l 140 (477)
T 2id5_A 128 YNLKSLEVGDNDL 140 (477)
T ss_dssp TTCCEEEECCTTC
T ss_pred ccCCEEECCCCcc
Confidence 5555555555543
No 63
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.34 E-value=6.5e-12 Score=97.08 Aligned_cols=92 Identities=15% Similarity=0.231 Sum_probs=58.7
Q ss_pred ccccCccccceeccCCCcCcccccCcccCCCCCCCEEeCCCCCCCCccchhhcCCCCCCCeEecCCCCccccCcC-cCCC
Q psy16571 3 KEVKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSES-MLAW 81 (150)
Q Consensus 3 ~~f~~l~~L~~L~l~~n~~l~~i~~~~~~~l~~L~~l~l~~n~~l~~~~~~~~~~l~~L~~l~l~~n~l~~lp~~-~~~~ 81 (150)
.+|.++++|+.|++++| .++.+++..|..+++|+.|++++|. +..+++..|..+++|+.|+|++|.+..++.. +..+
T Consensus 93 ~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~-l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l 170 (597)
T 3oja_B 93 YAFAYAHTIQKLYMGFN-AIRYLPPHVFQNVPLLTVLVLERND-LSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQAT 170 (597)
T ss_dssp TTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTC
T ss_pred HHhcCCCCCCEEECCCC-cCCCCCHHHHcCCCCCCEEEeeCCC-CCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcC
Confidence 45666666666666666 6666666666666666666666664 6666666566666666666666666655443 4446
Q ss_pred CCccEEEccCCCccc
Q psy16571 82 PELRTIDIAENPIEC 96 (150)
Q Consensus 82 ~~L~~L~l~~N~~~c 96 (150)
++|+.|++++|.+..
T Consensus 171 ~~L~~L~L~~N~l~~ 185 (597)
T 3oja_B 171 TSLQNLQLSSNRLTH 185 (597)
T ss_dssp TTCCEEECTTSCCSB
T ss_pred CcCcEEECcCCCCCC
Confidence 666666666666543
No 64
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.34 E-value=5.1e-12 Score=97.43 Aligned_cols=92 Identities=25% Similarity=0.366 Sum_probs=55.4
Q ss_pred CccccCccccceeccCCCcCcccccCcccCCCCCCCEEeCCCCCCCCccchhhcCCCCCCCeEecCCCCccccC-cCcCC
Q psy16571 2 EKEVKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFS-ESMLA 80 (150)
Q Consensus 2 p~~f~~l~~L~~L~l~~n~~l~~i~~~~~~~l~~L~~l~l~~n~~l~~~~~~~~~~l~~L~~l~l~~n~l~~lp-~~~~~ 80 (150)
|.+|.++++|++|++++| .+..+.+.+|..+++|+.|++++|. +..+.+..|..+++|+.|++++|.++.++ ..+..
T Consensus 50 ~~~~~~l~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~ 127 (606)
T 3t6q_A 50 NTTFSRLINLTFLDLTRC-QIYWIHEDTFQSQHRLDTLVLTANP-LIFMAETALSGPKALKHLFFIQTGISSIDFIPLHN 127 (606)
T ss_dssp TTTSTTCTTCSEEECTTC-CCCEECTTTTTTCTTCCEEECTTCC-CSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTT
T ss_pred hhHhccCccceEEECCCC-ccceeChhhccCccccCeeeCCCCc-ccccChhhhcccccccEeeccccCcccCCcchhcc
Confidence 445666666666666666 6666666666666666666666664 66665555666666666666666666542 33334
Q ss_pred CCCccEEEccCCCcc
Q psy16571 81 WPELRTIDIAENPIE 95 (150)
Q Consensus 81 ~~~L~~L~l~~N~~~ 95 (150)
+++|+.|++++|.+.
T Consensus 128 l~~L~~L~L~~n~l~ 142 (606)
T 3t6q_A 128 QKTLESLYLGSNHIS 142 (606)
T ss_dssp CTTCCEEECCSSCCC
T ss_pred CCcccEEECCCCccc
Confidence 555555555555443
No 65
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.33 E-value=6.3e-12 Score=96.06 Aligned_cols=90 Identities=23% Similarity=0.381 Sum_probs=49.0
Q ss_pred ccccCccccceeccCCCcCcccccCcccCCCCCCCEEeCCCCCCCCccchhhcCCCCCCCeEecCCCCccccCc-CcCCC
Q psy16571 3 KEVKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSE-SMLAW 81 (150)
Q Consensus 3 ~~f~~l~~L~~L~l~~n~~l~~i~~~~~~~l~~L~~l~l~~n~~l~~~~~~~~~~l~~L~~l~l~~n~l~~lp~-~~~~~ 81 (150)
.+|.++++|++|++++| .++.+++.+|..+++|+.|++++|. +..+++..|.++++|+.|++++|.+..++. .+..+
T Consensus 46 ~~~~~l~~L~~L~Ls~n-~i~~i~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l 123 (570)
T 2z63_A 46 YSFFSFPELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILTGNP-IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHL 123 (570)
T ss_dssp TTTTTCSSCCEEECTTC-CCCEECTTTTTTCTTCCEEECTTCC-CCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTC
T ss_pred hHhhCCCCceEEECCCC-cCCccCcccccCchhCCEEeCcCCc-CCccCHhhhcCccccccccccccccccCCCcccccc
Confidence 34556666666666666 5666655556666666666666664 555555555555555555555555554443 23334
Q ss_pred CCccEEEccCCCc
Q psy16571 82 PELRTIDIAENPI 94 (150)
Q Consensus 82 ~~L~~L~l~~N~~ 94 (150)
++|+.|++++|.+
T Consensus 124 ~~L~~L~L~~n~l 136 (570)
T 2z63_A 124 KTLKELNVAHNLI 136 (570)
T ss_dssp TTCCEEECCSSCC
T ss_pred ccccEEecCCCcc
Confidence 4444444444433
No 66
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.31 E-value=1.1e-12 Score=86.52 Aligned_cols=90 Identities=23% Similarity=0.309 Sum_probs=79.7
Q ss_pred cccCccccceeccCCCcCcccccCcccCCCCCCCEEeCCCCCCCCccch-hhcCCCCCCCeEecCCCCccccCcC----c
Q psy16571 4 EVKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEE-DALVGLPNLYHLNLKENAFTSFSES----M 78 (150)
Q Consensus 4 ~f~~l~~L~~L~l~~n~~l~~i~~~~~~~l~~L~~l~l~~n~~l~~~~~-~~~~~l~~L~~l~l~~n~l~~lp~~----~ 78 (150)
.|.++++|++|++++| .++.+++..|..+++|+.|++++|. ++.++. ..+..+++|+.+++++|.++.+|.. +
T Consensus 59 ~l~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N~-i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~ 136 (176)
T 1a9n_A 59 GFPLLRRLKTLLVNNN-RICRIGEGLDQALPDLTELILTNNS-LVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVI 136 (176)
T ss_dssp CCCCCSSCCEEECCSS-CCCEECSCHHHHCTTCCEEECCSCC-CCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHH
T ss_pred ccccCCCCCEEECCCC-cccccCcchhhcCCCCCEEECCCCc-CCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHH
Confidence 5788899999999999 9999998777899999999999996 988875 4678899999999999999998875 6
Q ss_pred CCCCCccEEEccCCCcc
Q psy16571 79 LAWPELRTIDIAENPIE 95 (150)
Q Consensus 79 ~~~~~L~~L~l~~N~~~ 95 (150)
..+++|+.|++++|...
T Consensus 137 ~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 137 YKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp HHCTTCSEETTEECCHH
T ss_pred HHCCccceeCCCcCCHH
Confidence 66899999999988754
No 67
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.31 E-value=4.9e-12 Score=97.77 Aligned_cols=93 Identities=18% Similarity=0.305 Sum_probs=84.4
Q ss_pred ccccCccccceeccCCCcCcccccCcccCCCCCCCEEeCCCCCCCCccchhhcCCCCCCCeEecCCCCccccCcCc-CCC
Q psy16571 3 KEVKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESM-LAW 81 (150)
Q Consensus 3 ~~f~~l~~L~~L~l~~n~~l~~i~~~~~~~l~~L~~l~l~~n~~l~~~~~~~~~~l~~L~~l~l~~n~l~~lp~~~-~~~ 81 (150)
..|.++++|+.|++++| .++.+++..|..+++|+.|++++|. +..+++..|..+++|+.|+|++|.++.+|..+ ..+
T Consensus 69 ~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l 146 (597)
T 3oja_B 69 ALLDSFRQVELLNLNDL-QIEEIDTYAFAYAHTIQKLYMGFNA-IRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNT 146 (597)
T ss_dssp HHHHHCCCCSEEECTTS-CCCEECTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred HHHccCCCCcEEECCCC-CCCCCChHHhcCCCCCCEEECCCCc-CCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccC
Confidence 34677899999999999 9999998899999999999999996 99999988999999999999999999999876 568
Q ss_pred CCccEEEccCCCcccc
Q psy16571 82 PELRTIDIAENPIECG 97 (150)
Q Consensus 82 ~~L~~L~l~~N~~~c~ 97 (150)
++|+.|++++|.+...
T Consensus 147 ~~L~~L~Ls~N~l~~~ 162 (597)
T 3oja_B 147 PKLTTLSMSNNNLERI 162 (597)
T ss_dssp TTCCEEECCSSCCCBC
T ss_pred CCCCEEEeeCCcCCCC
Confidence 9999999999988643
No 68
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.31 E-value=5.3e-12 Score=97.24 Aligned_cols=90 Identities=21% Similarity=0.316 Sum_probs=73.0
Q ss_pred ccCccccceeccCCCcCcccccCcccCCCCCCCEEeCCCCCCCCccchhhcCCCCCCCeEecCCCCcccc--CcCcCCCC
Q psy16571 5 VKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSF--SESMLAWP 82 (150)
Q Consensus 5 f~~l~~L~~L~l~~n~~l~~i~~~~~~~l~~L~~l~l~~n~~l~~~~~~~~~~l~~L~~l~l~~n~l~~l--p~~~~~~~ 82 (150)
|.++++|+.|++++| .++.+|. .+..+++|+.|++++|. ++.++ .+..+++|+.|+|++|.|+.+ |..+..++
T Consensus 459 ~~~l~~L~~L~Ls~N-~l~~lp~-~~~~l~~L~~L~Ls~N~-l~~lp--~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~ 533 (567)
T 1dce_A 459 LEQLLLVTHLDLSHN-RLRALPP-ALAALRCLEVLQASDNA-LENVD--GVANLPRLQELLLCNNRLQQSAAIQPLVSCP 533 (567)
T ss_dssp GGGGTTCCEEECCSS-CCCCCCG-GGGGCTTCCEEECCSSC-CCCCG--GGTTCSSCCEEECCSSCCCSSSTTGGGGGCT
T ss_pred ccccccCcEeecCcc-cccccch-hhhcCCCCCEEECCCCC-CCCCc--ccCCCCCCcEEECCCCCCCCCCCcHHHhcCC
Confidence 777888888888888 8887765 67788888888888885 88876 577888888888888888877 67777788
Q ss_pred CccEEEccCCCcccccC
Q psy16571 83 ELRTIDIAENPIECGCN 99 (150)
Q Consensus 83 ~L~~L~l~~N~~~c~c~ 99 (150)
+|+.|++++|++.....
T Consensus 534 ~L~~L~L~~N~l~~~~~ 550 (567)
T 1dce_A 534 RLVLLNLQGNSLCQEEG 550 (567)
T ss_dssp TCCEEECTTSGGGGSSS
T ss_pred CCCEEEecCCcCCCCcc
Confidence 88888888888876543
No 69
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.31 E-value=8.7e-12 Score=95.04 Aligned_cols=90 Identities=21% Similarity=0.297 Sum_probs=71.5
Q ss_pred CccccCccccceeccCCCcCcccccCcccCCCCCCCEEeCCCCCCCCccchhhcCCCCCCCeEecCCCCcccc--CcCcC
Q psy16571 2 EKEVKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSF--SESML 79 (150)
Q Consensus 2 p~~f~~l~~L~~L~l~~n~~l~~i~~~~~~~l~~L~~l~l~~n~~l~~~~~~~~~~l~~L~~l~l~~n~l~~l--p~~~~ 79 (150)
|.+|.++++|++|++++| .++.+++.+|..+++|+.|++++|. +..+++..|..+++|+.|++++|.++.+ |..+.
T Consensus 43 ~~~~~~l~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 120 (549)
T 2z81_A 43 HGDLRACANLQVLILKSS-RINTIEGDAFYSLGSLEHLDLSDNH-LSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFP 120 (549)
T ss_dssp SSTTSSCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECTTSC-CCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCT
T ss_pred hhhhhcCCcccEEECCCC-CcCccChhhccccccCCEEECCCCc-cCccCHHHhccCCCCcEEECCCCcccccchhhhhh
Confidence 567888888888888888 8888888788888888888888885 8888887788888888888888888743 45555
Q ss_pred CCCCccEEEccCCC
Q psy16571 80 AWPELRTIDIAENP 93 (150)
Q Consensus 80 ~~~~L~~L~l~~N~ 93 (150)
.+++|+.|++++|.
T Consensus 121 ~l~~L~~L~L~~n~ 134 (549)
T 2z81_A 121 NLTNLQTLRIGNVE 134 (549)
T ss_dssp TCTTCCEEEEEESS
T ss_pred ccCCccEEECCCCc
Confidence 66777777777665
No 70
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.31 E-value=7.6e-12 Score=83.88 Aligned_cols=85 Identities=21% Similarity=0.275 Sum_probs=44.6
Q ss_pred ccCccccceeccCCCcCcccccCcccCCCCCCCEEeCCCCCCCCccchhhcCCCCCCCeEecCCCCccc-cCcCcCCCCC
Q psy16571 5 VKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTS-FSESMLAWPE 83 (150)
Q Consensus 5 f~~l~~L~~L~l~~n~~l~~i~~~~~~~l~~L~~l~l~~n~~l~~~~~~~~~~l~~L~~l~l~~n~l~~-lp~~~~~~~~ 83 (150)
+..+++|++|++++| .++.++ .+..+++|+.|++++|. ++...+..+..+++|+.|++++|.++. .+..+..+++
T Consensus 62 l~~l~~L~~L~l~~n-~~~~~~--~l~~l~~L~~L~l~~n~-l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~ 137 (197)
T 4ezg_A 62 IEYAHNIKDLTINNI-HATNYN--PISGLSNLERLRIMGKD-VTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPK 137 (197)
T ss_dssp GGGCTTCSEEEEESC-CCSCCG--GGTTCTTCCEEEEECTT-CBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSS
T ss_pred HhcCCCCCEEEccCC-CCCcch--hhhcCCCCCEEEeECCc-cCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCC
Confidence 344555555555555 554443 34555555555555553 554334445555555555555555553 3333444555
Q ss_pred ccEEEccCCC
Q psy16571 84 LRTIDIAENP 93 (150)
Q Consensus 84 L~~L~l~~N~ 93 (150)
|+.|++++|.
T Consensus 138 L~~L~L~~n~ 147 (197)
T 4ezg_A 138 VNSIDLSYNG 147 (197)
T ss_dssp CCEEECCSCT
T ss_pred CCEEEccCCC
Confidence 5555555554
No 71
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.30 E-value=2.7e-12 Score=83.91 Aligned_cols=91 Identities=24% Similarity=0.241 Sum_probs=79.2
Q ss_pred ccccCccccceeccCCCcCcccccCcccCCCCCCCEEeCCCCCCCCccch-hhcCCCCCCCeEecCCCCccccCc----C
Q psy16571 3 KEVKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEE-DALVGLPNLYHLNLKENAFTSFSE----S 77 (150)
Q Consensus 3 ~~f~~l~~L~~L~l~~n~~l~~i~~~~~~~l~~L~~l~l~~n~~l~~~~~-~~~~~l~~L~~l~l~~n~l~~lp~----~ 77 (150)
..|..+++|++|++++| .+....+..+..+++|+.|++++|. ++.++. ..+..+++|+.|++++|.++.+|. .
T Consensus 65 ~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~ 142 (168)
T 2ell_A 65 SNLPKLPKLKKLELSEN-RIFGGLDMLAEKLPNLTHLNLSGNK-LKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESV 142 (168)
T ss_dssp SSCCCCSSCCEEEEESC-CCCSCCCHHHHHCTTCCEEECBSSS-CCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHH
T ss_pred hhhccCCCCCEEECcCC-cCchHHHHHHhhCCCCCEEeccCCc-cCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHH
Confidence 35788999999999999 9988666677779999999999996 999864 678899999999999999999887 5
Q ss_pred cCCCCCccEEEccCCCcc
Q psy16571 78 MLAWPELRTIDIAENPIE 95 (150)
Q Consensus 78 ~~~~~~L~~L~l~~N~~~ 95 (150)
+..+++|+.|++.+|...
T Consensus 143 ~~~l~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 143 FKLLPQLTYLDGYDREDQ 160 (168)
T ss_dssp HTTCSSCCEETTEETTSC
T ss_pred HHhCccCcEecCCCCChh
Confidence 667999999999998764
No 72
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.30 E-value=2.9e-12 Score=91.79 Aligned_cols=92 Identities=21% Similarity=0.277 Sum_probs=53.8
Q ss_pred CccccCccccceeccCCCcCcccccCcccCCCCCCCEEeCCCCCCCCccchhhcCCCCCCCeEecCCCCcc-ccCcCcCC
Q psy16571 2 EKEVKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFT-SFSESMLA 80 (150)
Q Consensus 2 p~~f~~l~~L~~L~l~~n~~l~~i~~~~~~~l~~L~~l~l~~n~~l~~~~~~~~~~l~~L~~l~l~~n~l~-~lp~~~~~ 80 (150)
|..|.++++|++|++++| .++...+..|..+++|+.|++++|. +....+..+..+++|+.|++++|.++ .+|..+..
T Consensus 94 p~~l~~l~~L~~L~Ls~n-~l~~~~p~~~~~l~~L~~L~Ls~N~-l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~ 171 (313)
T 1ogq_A 94 PPAIAKLTQLHYLYITHT-NVSGAIPDFLSQIKTLVTLDFSYNA-LSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGS 171 (313)
T ss_dssp CGGGGGCTTCSEEEEEEE-CCEEECCGGGGGCTTCCEEECCSSE-EESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGC
T ss_pred ChhHhcCCCCCEEECcCC-eeCCcCCHHHhCCCCCCEEeCCCCc-cCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhh
Confidence 345555666666666666 5554444455566666666666664 55444444556666666666666665 55555555
Q ss_pred CC-CccEEEccCCCcc
Q psy16571 81 WP-ELRTIDIAENPIE 95 (150)
Q Consensus 81 ~~-~L~~L~l~~N~~~ 95 (150)
+. .|+.|++++|.+.
T Consensus 172 l~~~L~~L~L~~N~l~ 187 (313)
T 1ogq_A 172 FSKLFTSMTISRNRLT 187 (313)
T ss_dssp CCTTCCEEECCSSEEE
T ss_pred hhhcCcEEECcCCeee
Confidence 54 5666666666554
No 73
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.29 E-value=1.2e-11 Score=87.95 Aligned_cols=89 Identities=27% Similarity=0.372 Sum_probs=40.3
Q ss_pred ccCccccceeccCCCcCccc-ccCcccCCCCCCCEEeCCCCCCCCccchhhcCCCCCCCeEecCCCCccccCc-CcCCCC
Q psy16571 5 VKGLSYLKRLEITGASNLTR-VRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSE-SMLAWP 82 (150)
Q Consensus 5 f~~l~~L~~L~l~~n~~l~~-i~~~~~~~l~~L~~l~l~~n~~l~~~~~~~~~~l~~L~~l~l~~n~l~~lp~-~~~~~~ 82 (150)
|.++++|++|++++| .+.. ..+..+..+++|+.|++++|. ++.+++..|..+++|+.|++++|.++.++. .+..++
T Consensus 146 ~~~l~~L~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~ 223 (306)
T 2z66_A 146 FNGLSSLEVLKMAGN-SFQENFLPDIFTELRNLTFLDLSQCQ-LEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLN 223 (306)
T ss_dssp TTTCTTCCEEECTTC-EEGGGEECSCCTTCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCT
T ss_pred cccCcCCCEEECCCC-ccccccchhHHhhCcCCCEEECCCCC-cCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcc
Confidence 344444444444444 4433 222334444444444444443 444444444444555555555555544433 222344
Q ss_pred CccEEEccCCCcc
Q psy16571 83 ELRTIDIAENPIE 95 (150)
Q Consensus 83 ~L~~L~l~~N~~~ 95 (150)
+|+.|++++|.+.
T Consensus 224 ~L~~L~L~~N~l~ 236 (306)
T 2z66_A 224 SLQVLDYSLNHIM 236 (306)
T ss_dssp TCCEEECTTSCCC
T ss_pred cCCEeECCCCCCc
Confidence 5555555555443
No 74
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.29 E-value=7e-12 Score=99.48 Aligned_cols=94 Identities=19% Similarity=0.172 Sum_probs=84.9
Q ss_pred CccccCccccceeccCCCcCcccccCcccCCCCCCCEEeCCCCCCCCccchhhcCCCCCCCeEecCCCCcc-ccCcCcCC
Q psy16571 2 EKEVKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFT-SFSESMLA 80 (150)
Q Consensus 2 p~~f~~l~~L~~L~l~~n~~l~~i~~~~~~~l~~L~~l~l~~n~~l~~~~~~~~~~l~~L~~l~l~~n~l~-~lp~~~~~ 80 (150)
|..|..+..|+.|++++| .+++..+..+..++.|+.|++++|. +++..|..+..+++|+.|+|++|+++ .+|..+..
T Consensus 625 ~~~~~~l~~L~~LdLs~N-~l~g~ip~~l~~l~~L~~L~Ls~N~-l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~ 702 (768)
T 3rgz_A 625 SPTFDNNGSMMFLDMSYN-MLSGYIPKEIGSMPYLFILNLGHND-ISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSA 702 (768)
T ss_dssp CCSCSSSBCCCEEECCSS-CCBSCCCGGGGGCTTCCEEECCSSC-CCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGG
T ss_pred chhhhccccccEEECcCC-cccccCCHHHhccccCCEEeCcCCc-cCCCCChHHhCCCCCCEEECCCCcccCcCChHHhC
Confidence 456788899999999999 9988777889999999999999996 98877778999999999999999999 78888888
Q ss_pred CCCccEEEccCCCcccc
Q psy16571 81 WPELRTIDIAENPIECG 97 (150)
Q Consensus 81 ~~~L~~L~l~~N~~~c~ 97 (150)
++.|+.|++++|++...
T Consensus 703 l~~L~~L~ls~N~l~g~ 719 (768)
T 3rgz_A 703 LTMLTEIDLSNNNLSGP 719 (768)
T ss_dssp CCCCSEEECCSSEEEEE
T ss_pred CCCCCEEECcCCccccc
Confidence 99999999999998753
No 75
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.28 E-value=1.1e-11 Score=81.33 Aligned_cols=71 Identities=31% Similarity=0.409 Sum_probs=66.1
Q ss_pred CccccCccccceeccCCCcCcccccCcccCCCCCCCEEeCCCCCCCCccchhhcCCCCCCCeEecCCCCcccc
Q psy16571 2 EKEVKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSF 74 (150)
Q Consensus 2 p~~f~~l~~L~~L~l~~n~~l~~i~~~~~~~l~~L~~l~l~~n~~l~~~~~~~~~~l~~L~~l~l~~n~l~~l 74 (150)
|..|.++.+|++|++++| .++.+++..|..+++|+.|++++|. ++.+++..|..+++|+.|+|++|.+.-.
T Consensus 47 ~~~~~~l~~L~~L~Ls~N-~l~~l~~~~f~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~~~c~ 117 (170)
T 3g39_A 47 PGVFDRLTQLTRLDLDNN-QLTVLPAGVFDKLTQLTQLSLNDNQ-LKSIPRGAFDNLKSLTHIWLLNNPWDCA 117 (170)
T ss_dssp TTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCBCTT
T ss_pred hhhhcCcccCCEEECCCC-CcCccChhhccCCCCCCEEECCCCc-cCEeCHHHhcCCCCCCEEEeCCCCCCCC
Confidence 567999999999999999 9999999999999999999999996 9999998899999999999999988744
No 76
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.28 E-value=9.7e-12 Score=83.37 Aligned_cols=91 Identities=22% Similarity=0.340 Sum_probs=77.8
Q ss_pred ccccCccccceeccCCCcCcccccCcccCCCCCCCEEeCCCCCCCCccchhhcCCCCCCCeEecCCCC-ccccCcCcCCC
Q psy16571 3 KEVKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENA-FTSFSESMLAW 81 (150)
Q Consensus 3 ~~f~~l~~L~~L~l~~n~~l~~i~~~~~~~l~~L~~l~l~~n~~l~~~~~~~~~~l~~L~~l~l~~n~-l~~lp~~~~~~ 81 (150)
..|..+++|++|++++| .++...+..+..+++|+.|++++|. +....+..+..+++|+.|++++|. ++.++ .+..+
T Consensus 82 ~~l~~l~~L~~L~l~~n-~l~~~~~~~l~~l~~L~~L~Ls~n~-i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l 158 (197)
T 4ezg_A 82 NPISGLSNLERLRIMGK-DVTSDKIPNLSGLTSLTLLDISHSA-HDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTL 158 (197)
T ss_dssp GGGTTCTTCCEEEEECT-TCBGGGSCCCTTCTTCCEEECCSSB-CBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGC
T ss_pred hhhhcCCCCCEEEeECC-ccCcccChhhcCCCCCCEEEecCCc-cCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCC
Confidence 35778899999999999 8888666678899999999999996 888667778899999999999997 88886 56678
Q ss_pred CCccEEEccCCCccc
Q psy16571 82 PELRTIDIAENPIEC 96 (150)
Q Consensus 82 ~~L~~L~l~~N~~~c 96 (150)
++|+.|++++|.+.-
T Consensus 159 ~~L~~L~l~~n~i~~ 173 (197)
T 4ezg_A 159 PELKSLNIQFDGVHD 173 (197)
T ss_dssp SSCCEEECTTBCCCC
T ss_pred CCCCEEECCCCCCcC
Confidence 899999999998764
No 77
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.28 E-value=1.5e-11 Score=81.12 Aligned_cols=73 Identities=29% Similarity=0.356 Sum_probs=67.5
Q ss_pred CccccCccccceeccCCCcCcccccCcccCCCCCCCEEeCCCCCCCCccchhhcCCCCCCCeEecCCCCccccCc
Q psy16571 2 EKEVKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSE 76 (150)
Q Consensus 2 p~~f~~l~~L~~L~l~~n~~l~~i~~~~~~~l~~L~~l~l~~n~~l~~~~~~~~~~l~~L~~l~l~~n~l~~lp~ 76 (150)
|..|.++++|++|++++| .++.+++..|..+++|+.|++++|. ++.+++..|..+++|+.|+|++|.+...+.
T Consensus 50 ~~~~~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~l~~L~~L~L~~N~~~c~~~ 122 (174)
T 2r9u_A 50 PGVFDHLVNLQQLYFNSN-KLTAIPTGVFDKLTQLTQLDLNDNH-LKSIPRGAFDNLKSLTHIYLYNNPWDCECR 122 (174)
T ss_dssp TTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCSEEECCSSCBCTTBG
T ss_pred HHHhcCCcCCCEEECCCC-CCCccChhHhCCcchhhEEECCCCc-cceeCHHHhccccCCCEEEeCCCCcccccc
Confidence 567999999999999999 9999999889999999999999996 999999889999999999999999886554
No 78
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.27 E-value=5.7e-12 Score=86.78 Aligned_cols=90 Identities=21% Similarity=0.237 Sum_probs=68.4
Q ss_pred CccccCccccceeccCC-CcCcccccCcccCCCCCCCEEeCCCCCCCCccchhhcCCCCCCC---eEecCCC-CccccCc
Q psy16571 2 EKEVKGLSYLKRLEITG-ASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLY---HLNLKEN-AFTSFSE 76 (150)
Q Consensus 2 p~~f~~l~~L~~L~l~~-n~~l~~i~~~~~~~l~~L~~l~l~~n~~l~~~~~~~~~~l~~L~---~l~l~~n-~l~~lp~ 76 (150)
+.+|.++++|++|++++ | .++.+++..|..+++|+.+++++|. ++.++. |..+++|+ .+++++| .++.++.
T Consensus 73 ~~~f~~l~~L~~L~l~~~n-~l~~i~~~~f~~l~~L~~L~l~~n~-l~~lp~--~~~l~~L~~L~~L~l~~N~~l~~i~~ 148 (239)
T 2xwt_C 73 SHSFYNLSKVTHIEIRNTR-NLTYIDPDALKELPLLKFLGIFNTG-LKMFPD--LTKVYSTDIFFILEITDNPYMTSIPV 148 (239)
T ss_dssp TTTEESCTTCCEEEEEEET-TCCEECTTSEECCTTCCEEEEEEEC-CCSCCC--CTTCCBCCSEEEEEEESCTTCCEECT
T ss_pred HhHcCCCcCCcEEECCCCC-CeeEcCHHHhCCCCCCCEEeCCCCC-Cccccc--cccccccccccEEECCCCcchhhcCc
Confidence 34678888888888887 7 8888888788888888888888885 777664 66677777 7778777 7777776
Q ss_pred C-cCCCCCcc-EEEccCCCcc
Q psy16571 77 S-MLAWPELR-TIDIAENPIE 95 (150)
Q Consensus 77 ~-~~~~~~L~-~L~l~~N~~~ 95 (150)
. +..+++|+ .|++++|.+.
T Consensus 149 ~~~~~l~~L~~~L~l~~n~l~ 169 (239)
T 2xwt_C 149 NAFQGLCNETLTLKLYNNGFT 169 (239)
T ss_dssp TTTTTTBSSEEEEECCSCCCC
T ss_pred ccccchhcceeEEEcCCCCCc
Confidence 5 33467777 7777777765
No 79
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.27 E-value=1.9e-11 Score=87.91 Aligned_cols=85 Identities=21% Similarity=0.373 Sum_probs=48.7
Q ss_pred ccceeccCCCcCcccccCcccCCCCCCCEEeCCCCCCCCccchhhcCCCCCCCeEecCCCCccccCcCcCCCCCccEEEc
Q psy16571 10 YLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESMLAWPELRTIDI 89 (150)
Q Consensus 10 ~L~~L~l~~n~~l~~i~~~~~~~l~~L~~l~l~~n~~l~~~~~~~~~~l~~L~~l~l~~n~l~~lp~~~~~~~~L~~L~l 89 (150)
+|++|++++| .++.+++..|..+++|+.|++++|. ++.+++..|..+++|+.|++++|.++.+|..+..+++|+.|++
T Consensus 193 ~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l 270 (330)
T 1xku_A 193 SLTELHLDGN-KITKVDAASLKGLNNLAKLGLSFNS-ISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYL 270 (330)
T ss_dssp TCSEEECTTS-CCCEECTGGGTTCTTCCEEECCSSC-CCEECTTTGGGSTTCCEEECCSSCCSSCCTTTTTCSSCCEEEC
T ss_pred cCCEEECCCC-cCCccCHHHhcCCCCCCEEECCCCc-CceeChhhccCCCCCCEEECCCCcCccCChhhccCCCcCEEEC
Confidence 3444444444 4555544555556666666666664 5555555555556666666666666666655555666666666
Q ss_pred cCCCccc
Q psy16571 90 AENPIEC 96 (150)
Q Consensus 90 ~~N~~~c 96 (150)
++|++..
T Consensus 271 ~~N~i~~ 277 (330)
T 1xku_A 271 HNNNISA 277 (330)
T ss_dssp CSSCCCC
T ss_pred CCCcCCc
Confidence 6665543
No 80
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.27 E-value=1.2e-11 Score=94.90 Aligned_cols=88 Identities=22% Similarity=0.281 Sum_probs=50.3
Q ss_pred ccccCccccceeccCCCcCcccccCcccCCCCCCCEEeCCCCCCCCccchhhcCCCCCCCeEecCCCCccccC--cCcCC
Q psy16571 3 KEVKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFS--ESMLA 80 (150)
Q Consensus 3 ~~f~~l~~L~~L~l~~n~~l~~i~~~~~~~l~~L~~l~l~~n~~l~~~~~~~~~~l~~L~~l~l~~n~l~~lp--~~~~~ 80 (150)
.+|.++++|++|++++| .++.+++.+|.++++|+.|++++|. ++.++.. .+++|+.|++++|.+..++ ..+..
T Consensus 70 ~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~lp~~---~l~~L~~L~Ls~N~l~~l~~p~~~~~ 144 (562)
T 3a79_B 70 PDISFLSELRVLRLSHN-RIRSLDFHVFLFNQDLEYLDVSHNR-LQNISCC---PMASLRHLDLSFNDFDVLPVCKEFGN 144 (562)
T ss_dssp GGTTTCTTCCEEECCSC-CCCEECTTTTTTCTTCCEEECTTSC-CCEECSC---CCTTCSEEECCSSCCSBCCCCGGGGG
T ss_pred hhhccCCCccEEECCCC-CCCcCCHHHhCCCCCCCEEECCCCc-CCccCcc---ccccCCEEECCCCCccccCchHhhcc
Confidence 35555566666666665 5665555555556666666666664 5555443 4555666666666665543 34445
Q ss_pred CCCccEEEccCCCcc
Q psy16571 81 WPELRTIDIAENPIE 95 (150)
Q Consensus 81 ~~~L~~L~l~~N~~~ 95 (150)
+++|+.|++++|.+.
T Consensus 145 l~~L~~L~L~~n~l~ 159 (562)
T 3a79_B 145 LTKLTFLGLSAAKFR 159 (562)
T ss_dssp CTTCCEEEEECSBCC
T ss_pred cCcccEEecCCCccc
Confidence 566666666666554
No 81
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.27 E-value=7.5e-12 Score=98.89 Aligned_cols=90 Identities=22% Similarity=0.286 Sum_probs=73.5
Q ss_pred ccccCccccceeccCCCcCcccccCcccCCCCCCCEEeCCCCCCCCccchhhcCCCCCCCeEecCCCCccccCcCcCCCC
Q psy16571 3 KEVKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESMLAWP 82 (150)
Q Consensus 3 ~~f~~l~~L~~L~l~~n~~l~~i~~~~~~~l~~L~~l~l~~n~~l~~~~~~~~~~l~~L~~l~l~~n~l~~lp~~~~~~~ 82 (150)
..+.++.+|++|+|++| .++.++. .|..+++|+.|+|++|. ++.++. .|..+++|+.|+|++|.|+.+|..+..++
T Consensus 241 ~~~~~l~~L~~L~Ls~N-~l~~lp~-~~~~l~~L~~L~Ls~N~-l~~lp~-~~~~l~~L~~L~L~~N~l~~lp~~~~~l~ 316 (727)
T 4b8c_D 241 ANIFKYDFLTRLYLNGN-SLTELPA-EIKNLSNLRVLDLSHNR-LTSLPA-ELGSCFQLKYFYFFDNMVTTLPWEFGNLC 316 (727)
T ss_dssp GGGGGCCSCSCCBCTTS-CCSCCCG-GGGGGTTCCEEECTTSC-CSSCCS-SGGGGTTCSEEECCSSCCCCCCSSTTSCT
T ss_pred hhhcCCCCCCEEEeeCC-cCcccCh-hhhCCCCCCEEeCcCCc-CCccCh-hhcCCCCCCEEECCCCCCCccChhhhcCC
Confidence 34446778888888888 8887764 57788888999998886 887754 46788899999999999999988888899
Q ss_pred CccEEEccCCCccc
Q psy16571 83 ELRTIDIAENPIEC 96 (150)
Q Consensus 83 ~L~~L~l~~N~~~c 96 (150)
+|+.|+|++|++..
T Consensus 317 ~L~~L~L~~N~l~~ 330 (727)
T 4b8c_D 317 NLQFLGVEGNPLEK 330 (727)
T ss_dssp TCCCEECTTSCCCS
T ss_pred CccEEeCCCCccCC
Confidence 99999999999875
No 82
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.26 E-value=1.7e-11 Score=88.27 Aligned_cols=86 Identities=21% Similarity=0.307 Sum_probs=68.2
Q ss_pred cccceeccCCCcCcccccCcccCCCCCCCEEeCCCCCCCCccchhhcCCCCCCCeEecCCCCccccCcCcCCCCCccEEE
Q psy16571 9 SYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESMLAWPELRTID 88 (150)
Q Consensus 9 ~~L~~L~l~~n~~l~~i~~~~~~~l~~L~~l~l~~n~~l~~~~~~~~~~l~~L~~l~l~~n~l~~lp~~~~~~~~L~~L~ 88 (150)
++|++|++++| .++.+++..|..+++|+.|++++|. +..+++..|..+++|+.|++++|.++.+|..+..+++|+.|+
T Consensus 193 ~~L~~L~l~~n-~i~~~~~~~l~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~ 270 (332)
T 2ft3_A 193 ETLNELHLDHN-KIQAIELEDLLRYSKLYRLGLGHNQ-IRMIENGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVY 270 (332)
T ss_dssp SSCSCCBCCSS-CCCCCCTTSSTTCTTCSCCBCCSSC-CCCCCTTGGGGCTTCCEEECCSSCCCBCCTTGGGCTTCCEEE
T ss_pred CCCCEEECCCC-cCCccCHHHhcCCCCCCEEECCCCc-CCcCChhHhhCCCCCCEEECCCCcCeecChhhhcCccCCEEE
Confidence 46777777777 7777777777888888888888885 888777777778888888888888888887777788888888
Q ss_pred ccCCCccc
Q psy16571 89 IAENPIEC 96 (150)
Q Consensus 89 l~~N~~~c 96 (150)
+++|++..
T Consensus 271 l~~N~l~~ 278 (332)
T 2ft3_A 271 LHTNNITK 278 (332)
T ss_dssp CCSSCCCB
T ss_pred CCCCCCCc
Confidence 88888765
No 83
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.26 E-value=3.4e-11 Score=86.53 Aligned_cols=92 Identities=21% Similarity=0.354 Sum_probs=81.4
Q ss_pred CccccCccccceeccCCCcCcccccCcccCCCCCCCEEeCCCCCCCCccchhhcCCCCCCCeEecCCCCccccCcCcCC-
Q psy16571 2 EKEVKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESMLA- 80 (150)
Q Consensus 2 p~~f~~l~~L~~L~l~~n~~l~~i~~~~~~~l~~L~~l~l~~n~~l~~~~~~~~~~l~~L~~l~l~~n~l~~lp~~~~~- 80 (150)
+..|.++++|+.|++++| .++.+++..+..+++|+.|++++|. +..++.. +..+++|+.|++++|.++.++...+.
T Consensus 209 ~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~N~-l~~lp~~-l~~l~~L~~L~l~~N~i~~~~~~~f~~ 285 (330)
T 1xku_A 209 AASLKGLNNLAKLGLSFN-SISAVDNGSLANTPHLRELHLNNNK-LVKVPGG-LADHKYIQVVYLHNNNISAIGSNDFCP 285 (330)
T ss_dssp TGGGTTCTTCCEEECCSS-CCCEECTTTGGGSTTCCEEECCSSC-CSSCCTT-TTTCSSCCEEECCSSCCCCCCTTSSSC
T ss_pred HHHhcCCCCCCEEECCCC-cCceeChhhccCCCCCCEEECCCCc-CccCChh-hccCCCcCEEECCCCcCCccChhhcCC
Confidence 567889999999999999 9999998889999999999999996 9988764 67899999999999999999876653
Q ss_pred ------CCCccEEEccCCCccc
Q psy16571 81 ------WPELRTIDIAENPIEC 96 (150)
Q Consensus 81 ------~~~L~~L~l~~N~~~c 96 (150)
...+..+++.+|++.+
T Consensus 286 ~~~~~~~~~l~~l~l~~N~~~~ 307 (330)
T 1xku_A 286 PGYNTKKASYSGVSLFSNPVQY 307 (330)
T ss_dssp SSCCTTSCCCSEEECCSSSSCG
T ss_pred cccccccccccceEeecCcccc
Confidence 3678899999999875
No 84
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.25 E-value=5.9e-12 Score=90.18 Aligned_cols=92 Identities=17% Similarity=0.198 Sum_probs=76.6
Q ss_pred CccccCccccceeccCCCcCcccccCcccCCCCCCCEEeCCCCCCCCccchhhcCCCCCCCeEecCCCCcc-ccCcCcCC
Q psy16571 2 EKEVKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFT-SFSESMLA 80 (150)
Q Consensus 2 p~~f~~l~~L~~L~l~~n~~l~~i~~~~~~~l~~L~~l~l~~n~~l~~~~~~~~~~l~~L~~l~l~~n~l~-~lp~~~~~ 80 (150)
|..|..+. |++|++++| .++...+..|..+++|+.|++++|. +....+. +..+++|+.|++++|.++ .+|..+..
T Consensus 191 ~~~~~~l~-L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~ 266 (313)
T 1ogq_A 191 PPTFANLN-LAFVDLSRN-MLEGDASVLFGSDKNTQKIHLAKNS-LAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQ 266 (313)
T ss_dssp CGGGGGCC-CSEEECCSS-EEEECCGGGCCTTSCCSEEECCSSE-ECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGG
T ss_pred ChHHhCCc-ccEEECcCC-cccCcCCHHHhcCCCCCEEECCCCc-eeeecCc-ccccCCCCEEECcCCcccCcCChHHhc
Confidence 55677776 999999998 8888888888899999999999996 8766665 677889999999999998 67777778
Q ss_pred CCCccEEEccCCCcccc
Q psy16571 81 WPELRTIDIAENPIECG 97 (150)
Q Consensus 81 ~~~L~~L~l~~N~~~c~ 97 (150)
+++|+.|++++|++...
T Consensus 267 l~~L~~L~Ls~N~l~~~ 283 (313)
T 1ogq_A 267 LKFLHSLNVSFNNLCGE 283 (313)
T ss_dssp CTTCCEEECCSSEEEEE
T ss_pred CcCCCEEECcCCccccc
Confidence 88999999999988743
No 85
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.24 E-value=3.7e-11 Score=86.43 Aligned_cols=88 Identities=23% Similarity=0.406 Sum_probs=50.3
Q ss_pred ccccCccccceeccCCCcCcccccCcccCCCCCCCEEeCCCCCCCCccchhhcCCCCCCCeEecCCCCccccCcC-cCCC
Q psy16571 3 KEVKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSES-MLAW 81 (150)
Q Consensus 3 ~~f~~l~~L~~L~l~~n~~l~~i~~~~~~~l~~L~~l~l~~n~~l~~~~~~~~~~l~~L~~l~l~~n~l~~lp~~-~~~~ 81 (150)
.+|.++++|++|++++| .++.+.+..|..+++|+.|++++|. +..++...+ ++|+.|++++|.+..++.. +..+
T Consensus 72 ~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~-l~~l~~~~~---~~L~~L~l~~n~i~~~~~~~~~~l 146 (332)
T 2ft3_A 72 DDFKGLQHLYALVLVNN-KISKIHEKAFSPLRKLQKLYISKNH-LVEIPPNLP---SSLVELRIHDNRIRKVPKGVFSGL 146 (332)
T ss_dssp TTTTTCTTCCEEECCSS-CCCEECGGGSTTCTTCCEEECCSSC-CCSCCSSCC---TTCCEEECCSSCCCCCCSGGGSSC
T ss_pred hHhhCCCCCcEEECCCC-ccCccCHhHhhCcCCCCEEECCCCc-CCccCcccc---ccCCEEECCCCccCccCHhHhCCC
Confidence 34555556666666665 5555555555556666666666553 555544322 4555566666666555543 3346
Q ss_pred CCccEEEccCCCcc
Q psy16571 82 PELRTIDIAENPIE 95 (150)
Q Consensus 82 ~~L~~L~l~~N~~~ 95 (150)
++|+.|++++|.+.
T Consensus 147 ~~L~~L~l~~n~l~ 160 (332)
T 2ft3_A 147 RNMNCIEMGGNPLE 160 (332)
T ss_dssp SSCCEEECCSCCCB
T ss_pred ccCCEEECCCCccc
Confidence 66777777776664
No 86
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.23 E-value=1.1e-11 Score=97.87 Aligned_cols=90 Identities=20% Similarity=0.244 Sum_probs=77.6
Q ss_pred CccccCccccceeccCCCcCcccccCcccCCCCCCCEEeCCCCCCCCccchhhcCCCCCCCeEecCCCCccccCcCcCCC
Q psy16571 2 EKEVKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESMLAW 81 (150)
Q Consensus 2 p~~f~~l~~L~~L~l~~n~~l~~i~~~~~~~l~~L~~l~l~~n~~l~~~~~~~~~~l~~L~~l~l~~n~l~~lp~~~~~~ 81 (150)
+..|..+..|+.|++++| .+..++...+ .+++|+.|+|++|. ++.++. .|..+++|+.|+|++|.|+.+|..+..+
T Consensus 217 ~~~~~~l~~L~~L~Ls~n-~l~~l~~~~~-~l~~L~~L~Ls~N~-l~~lp~-~~~~l~~L~~L~Ls~N~l~~lp~~~~~l 292 (727)
T 4b8c_D 217 KDSKYDDQLWHALDLSNL-QIFNISANIF-KYDFLTRLYLNGNS-LTELPA-EIKNLSNLRVLDLSHNRLTSLPAELGSC 292 (727)
T ss_dssp -----CCCCCCEEECTTS-CCSCCCGGGG-GCCSCSCCBCTTSC-CSCCCG-GGGGGTTCCEEECTTSCCSSCCSSGGGG
T ss_pred hhhhccCCCCcEEECCCC-CCCCCChhhc-CCCCCCEEEeeCCc-CcccCh-hhhCCCCCCEEeCcCCcCCccChhhcCC
Confidence 567888999999999999 9999987666 79999999999996 997764 5788999999999999999999999999
Q ss_pred CCccEEEccCCCcc
Q psy16571 82 PELRTIDIAENPIE 95 (150)
Q Consensus 82 ~~L~~L~l~~N~~~ 95 (150)
++|+.|+|++|.+.
T Consensus 293 ~~L~~L~L~~N~l~ 306 (727)
T 4b8c_D 293 FQLKYFYFFDNMVT 306 (727)
T ss_dssp TTCSEEECCSSCCC
T ss_pred CCCCEEECCCCCCC
Confidence 99999999999775
No 87
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.23 E-value=2.5e-11 Score=94.76 Aligned_cols=90 Identities=26% Similarity=0.358 Sum_probs=48.8
Q ss_pred ccccCccccceeccCCCcCcccccCcccCCCCCCCEEeCCCCCCCCccchhhcCCCCCCCeEecCCCCccccCc-CcCCC
Q psy16571 3 KEVKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSE-SMLAW 81 (150)
Q Consensus 3 ~~f~~l~~L~~L~l~~n~~l~~i~~~~~~~l~~L~~l~l~~n~~l~~~~~~~~~~l~~L~~l~l~~n~l~~lp~-~~~~~ 81 (150)
.+|.++++|++|++++| .++.+++.+|..+++|+.|++++|. +..+++..|..+++|+.|++++|.+..++. .+..+
T Consensus 67 ~~~~~l~~L~~L~L~~n-~l~~l~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l 144 (680)
T 1ziw_A 67 ELCQKLPMLKVLNLQHN-ELSQLSDKTFAFCTNLTELHLMSNS-IQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQL 144 (680)
T ss_dssp THHHHCTTCCEEECCSS-CCCCCCTTTTTTCTTCSEEECCSSC-CCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCC
T ss_pred HHHhcccCcCEEECCCC-ccCccChhhhccCCCCCEEECCCCc-cCccChhHccccCCCCEEECCCCcccccCchhhccc
Confidence 34445555555555555 5555555555555555555555553 555555555555556666665555554332 23345
Q ss_pred CCccEEEccCCCc
Q psy16571 82 PELRTIDIAENPI 94 (150)
Q Consensus 82 ~~L~~L~l~~N~~ 94 (150)
++|+.|++++|.+
T Consensus 145 ~~L~~L~L~~n~l 157 (680)
T 1ziw_A 145 ENLQELLLSNNKI 157 (680)
T ss_dssp TTCCEEECCSSCC
T ss_pred ccCCEEEccCCcc
Confidence 5555555555544
No 88
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.23 E-value=2.6e-11 Score=87.37 Aligned_cols=88 Identities=18% Similarity=0.291 Sum_probs=62.4
Q ss_pred ccCccccceeccCCCcCcccccCcccCCCCCCCEEeCCCCCCCCccchhhcCCCCCCCeEecCCCCcc-ccCcCcCCCCC
Q psy16571 5 VKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFT-SFSESMLAWPE 83 (150)
Q Consensus 5 f~~l~~L~~L~l~~n~~l~~i~~~~~~~l~~L~~l~l~~n~~l~~~~~~~~~~l~~L~~l~l~~n~l~-~lp~~~~~~~~ 83 (150)
|.++++|++|++++| .++.++. .+..+++|+.|++++|. +..+++. +..+++|+.|++++|.+. .+|..+..+++
T Consensus 179 ~~~l~~L~~L~L~~n-~l~~lp~-~l~~l~~L~~L~L~~N~-l~~l~~~-l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~ 254 (328)
T 4fcg_A 179 HQGLVNLQSLRLEWT-GIRSLPA-SIANLQNLKSLKIRNSP-LSALGPA-IHHLPKLEELDLRGCTALRNYPPIFGGRAP 254 (328)
T ss_dssp EEESTTCCEEEEEEE-CCCCCCG-GGGGCTTCCEEEEESSC-CCCCCGG-GGGCTTCCEEECTTCTTCCBCCCCTTCCCC
T ss_pred hccCCCCCEEECcCC-CcCcchH-hhcCCCCCCEEEccCCC-CCcCchh-hccCCCCCEEECcCCcchhhhHHHhcCCCC
Confidence 455777888888887 7776654 46777778888888775 7776653 667777888888776655 56666666777
Q ss_pred ccEEEccCCCccc
Q psy16571 84 LRTIDIAENPIEC 96 (150)
Q Consensus 84 L~~L~l~~N~~~c 96 (150)
|+.|++++|.+.-
T Consensus 255 L~~L~L~~n~~~~ 267 (328)
T 4fcg_A 255 LKRLILKDCSNLL 267 (328)
T ss_dssp CCEEECTTCTTCC
T ss_pred CCEEECCCCCchh
Confidence 7777777766543
No 89
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.23 E-value=2.5e-11 Score=92.09 Aligned_cols=87 Identities=28% Similarity=0.344 Sum_probs=49.4
Q ss_pred cccCccccceeccCCCcCcccccCcccCCCCCCCEEeCCCCCCCCccchhhcCCCCCCCeEecCCCCccc--cCcCcCCC
Q psy16571 4 EVKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTS--FSESMLAW 81 (150)
Q Consensus 4 ~f~~l~~L~~L~l~~n~~l~~i~~~~~~~l~~L~~l~l~~n~~l~~~~~~~~~~l~~L~~l~l~~n~l~~--lp~~~~~~ 81 (150)
+|.++++|++|++++| .++.+.+..|..+++|++|++++|. ++.++.. .+++|+.|++++|.++. +|..+..+
T Consensus 40 ~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~lp~~---~l~~L~~L~L~~N~l~~~~~p~~~~~l 114 (520)
T 2z7x_B 40 DILSLSKLRILIISHN-RIQYLDISVFKFNQELEYLDLSHNK-LVKISCH---PTVNLKHLDLSFNAFDALPICKEFGNM 114 (520)
T ss_dssp HHTTCTTCCEEECCSS-CCCEEEGGGGTTCTTCCEEECCSSC-CCEEECC---CCCCCSEEECCSSCCSSCCCCGGGGGC
T ss_pred hccccccccEEecCCC-ccCCcChHHhhcccCCCEEecCCCc-eeecCcc---ccCCccEEeccCCccccccchhhhccC
Confidence 4555555666666665 5555555555556666666666654 5555443 45556666666666554 33445555
Q ss_pred CCccEEEccCCCcc
Q psy16571 82 PELRTIDIAENPIE 95 (150)
Q Consensus 82 ~~L~~L~l~~N~~~ 95 (150)
++|+.|++++|.+.
T Consensus 115 ~~L~~L~L~~n~l~ 128 (520)
T 2z7x_B 115 SQLKFLGLSTTHLE 128 (520)
T ss_dssp TTCCEEEEEESSCC
T ss_pred CcceEEEecCcccc
Confidence 66666666666554
No 90
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.22 E-value=2.5e-11 Score=96.30 Aligned_cols=99 Identities=20% Similarity=0.170 Sum_probs=73.9
Q ss_pred CccccCccccceeccCCCcCcccccCcccCCCCCCCEEeCCCCCCCCccchhhcCCCCCCCeEecCCCCcc-ccCcCcCC
Q psy16571 2 EKEVKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFT-SFSESMLA 80 (150)
Q Consensus 2 p~~f~~l~~L~~L~l~~n~~l~~i~~~~~~~l~~L~~l~l~~n~~l~~~~~~~~~~l~~L~~l~l~~n~l~-~lp~~~~~ 80 (150)
|..|..+++|+.|++++| .+.+..+..+..+++|+.|++++|. +....+..+..+++|+.|++++|.+. .+|..+..
T Consensus 459 p~~~~~l~~L~~L~L~~N-~l~~~~p~~l~~l~~L~~L~L~~N~-l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~ 536 (768)
T 3rgz_A 459 PQELMYVKTLETLILDFN-DLTGEIPSGLSNCTNLNWISLSNNR-LTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGD 536 (768)
T ss_dssp CGGGGGCTTCCEEECCSS-CCCSCCCGGGGGCTTCCEEECCSSC-CCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGG
T ss_pred CHHHcCCCCceEEEecCC-cccCcCCHHHhcCCCCCEEEccCCc-cCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcC
Confidence 445666777777777777 7776666667777788888888875 77666666777888888888888887 57777777
Q ss_pred CCCccEEEccCCCcccccChHH
Q psy16571 81 WPELRTIDIAENPIECGCNILW 102 (150)
Q Consensus 81 ~~~L~~L~l~~N~~~c~c~~~~ 102 (150)
+++|+.|++++|++.+.+...+
T Consensus 537 l~~L~~L~Ls~N~l~g~ip~~~ 558 (768)
T 3rgz_A 537 CRSLIWLDLNTNLFNGTIPAAM 558 (768)
T ss_dssp CTTCCEEECCSSEEESBCCGGG
T ss_pred CCCCCEEECCCCccCCcCChHH
Confidence 8888888888888887766544
No 91
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.21 E-value=5e-11 Score=95.48 Aligned_cols=94 Identities=22% Similarity=0.231 Sum_probs=64.3
Q ss_pred CccccCccccceeccCCCcCcccccCcccCCCCCCCEEeCCCCCCCCccch--hhcCCCCCCCeEecCCCCccccC--cC
Q psy16571 2 EKEVKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEE--DALVGLPNLYHLNLKENAFTSFS--ES 77 (150)
Q Consensus 2 p~~f~~l~~L~~L~l~~n~~l~~i~~~~~~~l~~L~~l~l~~n~~l~~~~~--~~~~~l~~L~~l~l~~n~l~~lp--~~ 77 (150)
|.+|.++++|++|++++| .+..+.+..|.++++|+.|++++|. +....+ ..|..+++|+.|+|++|.+..++ ..
T Consensus 66 ~~~f~~L~~L~~L~Ls~N-~l~~~~p~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~ 143 (844)
T 3j0a_A 66 KEAFRNLPNLRILDLGSS-KIYFLHPDAFQGLFHLFELRLYFCG-LSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPS 143 (844)
T ss_dssp TTTTSSCTTCCEEECTTC-CCCEECTTSSCSCSSCCCEECTTCC-CSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGG
T ss_pred HHHhcCCCCCCEEECCCC-cCcccCHhHccCCcccCEeeCcCCC-CCcccccCccccccCCCCEEECCCCcccccccchh
Confidence 456777777777777777 7777766677777777777777775 665222 23667777777777777776553 24
Q ss_pred cCCCCCccEEEccCCCcccc
Q psy16571 78 MLAWPELRTIDIAENPIECG 97 (150)
Q Consensus 78 ~~~~~~L~~L~l~~N~~~c~ 97 (150)
+.++++|+.|++++|.+...
T Consensus 144 ~~~L~~L~~L~Ls~N~i~~~ 163 (844)
T 3j0a_A 144 FGKLNSLKSIDFSSNQIFLV 163 (844)
T ss_dssp GGTCSSCCEEEEESSCCCCC
T ss_pred HhhCCCCCEEECCCCcCCee
Confidence 55677788888888777554
No 92
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.16 E-value=7.1e-11 Score=75.59 Aligned_cols=85 Identities=21% Similarity=0.224 Sum_probs=73.2
Q ss_pred CccccceeccCCCcCcc--cccCcccCCCCCCCEEeCCCCCCCCccchhhcCCCCCCCeEecCCCCccc-cCcCcCCCCC
Q psy16571 7 GLSYLKRLEITGASNLT--RVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTS-FSESMLAWPE 83 (150)
Q Consensus 7 ~l~~L~~L~l~~n~~l~--~i~~~~~~~l~~L~~l~l~~n~~l~~~~~~~~~~l~~L~~l~l~~n~l~~-lp~~~~~~~~ 83 (150)
..++|+.|++++| .++ .++. .+..+++|+.|++++|. ++.+ ..+..+++|+.|++++|.++. +|..+..+++
T Consensus 15 ~~~~l~~L~l~~n-~l~~~~~~~-~~~~l~~L~~L~l~~n~-l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~ 89 (149)
T 2je0_A 15 TPSDVKELVLDNS-RSNEGKLEG-LTDEFEELEFLSTINVG-LTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPN 89 (149)
T ss_dssp CGGGCSEEECTTC-BCBTTBCCS-CCTTCTTCCEEECTTSC-CCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTT
T ss_pred CCccCeEEEccCC-cCChhHHHH-HHhhcCCCcEEECcCCC-CCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCC
Confidence 4478999999999 888 5654 77889999999999996 9888 568899999999999999997 6665555899
Q ss_pred ccEEEccCCCccc
Q psy16571 84 LRTIDIAENPIEC 96 (150)
Q Consensus 84 L~~L~l~~N~~~c 96 (150)
|+.|++++|.+.-
T Consensus 90 L~~L~ls~N~i~~ 102 (149)
T 2je0_A 90 LTHLNLSGNKIKD 102 (149)
T ss_dssp CCEEECTTSCCCS
T ss_pred CCEEECCCCcCCC
Confidence 9999999998764
No 93
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.16 E-value=4.1e-11 Score=85.82 Aligned_cols=90 Identities=18% Similarity=0.180 Sum_probs=61.2
Q ss_pred ccccCccccceeccCCCcCcccccCccc-CCCCCCCEEeCCCCCCCCccchhhcCCCCCCCeEecCCCCccccCcCcCCC
Q psy16571 3 KEVKGLSYLKRLEITGASNLTRVRKGAF-ADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESMLAW 81 (150)
Q Consensus 3 ~~f~~l~~L~~L~l~~n~~l~~i~~~~~-~~l~~L~~l~l~~n~~l~~~~~~~~~~l~~L~~l~l~~n~l~~lp~~~~~~ 81 (150)
..|.++++|++|++++| .++.+++..+ ..+++|+.|++++|. ++.++.. ..+++|+.|++++|.++.+|..+..+
T Consensus 138 ~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~--~~l~~L~~L~Ls~N~l~~l~~~~~~l 213 (317)
T 3o53_A 138 LDEGCRSRVQYLDLKLN-EIDTVNFAELAASSDTLEHLNLQYNF-IYDVKGQ--VVFAKLKTLDLSSNKLAFMGPEFQSA 213 (317)
T ss_dssp BCTGGGSSEEEEECTTS-CCCEEEGGGGGGGTTTCCEEECTTSC-CCEEECC--CCCTTCCEEECCSSCCCEECGGGGGG
T ss_pred hhhhccCCCCEEECCCC-CCCcccHHHHhhccCcCCEEECCCCc-Ccccccc--cccccCCEEECCCCcCCcchhhhccc
Confidence 35566667777777777 7766655444 356777777777774 7666443 24677777777777777777766667
Q ss_pred CCccEEEccCCCccc
Q psy16571 82 PELRTIDIAENPIEC 96 (150)
Q Consensus 82 ~~L~~L~l~~N~~~c 96 (150)
++|+.|++++|.+..
T Consensus 214 ~~L~~L~L~~N~l~~ 228 (317)
T 3o53_A 214 AGVTWISLRNNKLVL 228 (317)
T ss_dssp TTCSEEECTTSCCCE
T ss_pred CcccEEECcCCcccc
Confidence 778888888777653
No 94
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.15 E-value=6e-11 Score=84.81 Aligned_cols=89 Identities=19% Similarity=0.233 Sum_probs=66.6
Q ss_pred ccCccccceeccCCCcCccc---ccCcccCCCCCCCEEeCCCCCCCCccch-hhcCCCCCCCeEecCCCCccccCcCcCC
Q psy16571 5 VKGLSYLKRLEITGASNLTR---VRKGAFADNLNLETLTLNKNPKLKIIEE-DALVGLPNLYHLNLKENAFTSFSESMLA 80 (150)
Q Consensus 5 f~~l~~L~~L~l~~n~~l~~---i~~~~~~~l~~L~~l~l~~n~~l~~~~~-~~~~~l~~L~~l~l~~n~l~~lp~~~~~ 80 (150)
|.++++|++|++++| .++. ++...+..+++|+.|++++|. +....+ ..+..+++|+.|++++|.++.+|..++
T Consensus 197 ~~~l~~L~~L~L~~N-~l~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~- 273 (312)
T 1wwl_A 197 PLKFPTLQVLALRNA-GMETPSGVCSALAAARVQLQGLDLSHNS-LRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLP- 273 (312)
T ss_dssp TTSCTTCCEEECTTS-CCCCHHHHHHHHHHTTCCCSEEECTTSC-CCSSCCCSCCCCCTTCCEEECTTSCCSSCCSSCC-
T ss_pred hccCCCCCEEECCCC-cCcchHHHHHHHHhcCCCCCEEECCCCc-CCcccchhhhhhcCCCCEEECCCCccChhhhhcc-
Confidence 377888888888888 8873 334455667888888888885 777553 445567888888888888888887666
Q ss_pred CCCccEEEccCCCcccc
Q psy16571 81 WPELRTIDIAENPIECG 97 (150)
Q Consensus 81 ~~~L~~L~l~~N~~~c~ 97 (150)
++|+.|++++|.+.-.
T Consensus 274 -~~L~~L~Ls~N~l~~~ 289 (312)
T 1wwl_A 274 -AKLSVLDLSYNRLDRN 289 (312)
T ss_dssp -SEEEEEECCSSCCCSC
T ss_pred -CCceEEECCCCCCCCC
Confidence 6788888888877654
No 95
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.14 E-value=9.5e-11 Score=84.56 Aligned_cols=89 Identities=26% Similarity=0.277 Sum_probs=66.4
Q ss_pred ccCccccceeccCCCcCcccccCcccCCCCCCCEEeCCCCCCCCccchhhcCCCCCCCeEecCCCCccccC-cCcCCCCC
Q psy16571 5 VKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFS-ESMLAWPE 83 (150)
Q Consensus 5 f~~l~~L~~L~l~~n~~l~~i~~~~~~~l~~L~~l~l~~n~~l~~~~~~~~~~l~~L~~l~l~~n~l~~lp-~~~~~~~~ 83 (150)
+..+++|++|++++| .++.++ .+..+++|+.+++++|. ++.++ .+..+++|+.|++++|.+...+ ..+..+++
T Consensus 239 ~~~l~~L~~L~l~~n-~l~~~~--~~~~l~~L~~L~l~~n~-l~~~~--~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~ 312 (347)
T 4fmz_A 239 LANLSQLTWLEIGTN-QISDIN--AVKDLTKLKMLNVGSNQ-ISDIS--VLNNLSQLNSLFLNNNQLGNEDMEVIGGLTN 312 (347)
T ss_dssp GTTCTTCCEEECCSS-CCCCCG--GGTTCTTCCEEECCSSC-CCCCG--GGGGCTTCSEEECCSSCCCGGGHHHHHTCTT
T ss_pred hhcCCCCCEEECCCC-ccCCCh--hHhcCCCcCEEEccCCc-cCCCh--hhcCCCCCCEEECcCCcCCCcChhHhhcccc
Confidence 667788888888888 877764 47778888888888885 77763 3567788888888888887544 34556788
Q ss_pred ccEEEccCCCcccccC
Q psy16571 84 LRTIDIAENPIECGCN 99 (150)
Q Consensus 84 L~~L~l~~N~~~c~c~ 99 (150)
|+.|++++|++.....
T Consensus 313 L~~L~L~~n~l~~~~~ 328 (347)
T 4fmz_A 313 LTTLFLSQNHITDIRP 328 (347)
T ss_dssp CSEEECCSSSCCCCGG
T ss_pred CCEEEccCCccccccC
Confidence 8888888888776544
No 96
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.13 E-value=5.3e-11 Score=90.08 Aligned_cols=91 Identities=18% Similarity=0.188 Sum_probs=63.2
Q ss_pred CccccCccccceeccCCCcCcccccCcccC-CCCCCCEEeCCCCCCCCccchhhcCCCCCCCeEecCCCCccccCcCcCC
Q psy16571 2 EKEVKGLSYLKRLEITGASNLTRVRKGAFA-DNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESMLA 80 (150)
Q Consensus 2 p~~f~~l~~L~~L~l~~n~~l~~i~~~~~~-~l~~L~~l~l~~n~~l~~~~~~~~~~l~~L~~l~l~~n~l~~lp~~~~~ 80 (150)
|..|.++++|+.|++++| .++.+++..+. .+++|+.|++++|. ++.+++. ..+++|+.|+|++|.++.+|..+..
T Consensus 137 ~~~~~~l~~L~~L~Ls~N-~l~~~~~~~l~~~l~~L~~L~Ls~N~-l~~~~~~--~~l~~L~~L~Ls~N~l~~~~~~~~~ 212 (487)
T 3oja_A 137 DLDEGCRSRVQYLDLKLN-EIDTVNFAELAASSDTLEHLNLQYNF-IYDVKGQ--VVFAKLKTLDLSSNKLAFMGPEFQS 212 (487)
T ss_dssp GBCGGGGSSEEEEECTTS-CCCEEEGGGGGGGTTTCCEEECTTSC-CCEEECC--CCCTTCCEEECCSSCCCEECGGGGG
T ss_pred chhhcCCCCCCEEECCCC-CCCCcChHHHhhhCCcccEEecCCCc-ccccccc--ccCCCCCEEECCCCCCCCCCHhHcC
Confidence 345666677777777777 77665555554 56777777777775 7766443 3477778888888888777777666
Q ss_pred CCCccEEEccCCCccc
Q psy16571 81 WPELRTIDIAENPIEC 96 (150)
Q Consensus 81 ~~~L~~L~l~~N~~~c 96 (150)
+++|+.|++++|.+..
T Consensus 213 l~~L~~L~Ls~N~l~~ 228 (487)
T 3oja_A 213 AAGVTWISLRNNKLVL 228 (487)
T ss_dssp GTTCSEEECTTSCCCE
T ss_pred CCCccEEEecCCcCcc
Confidence 7788888888887653
No 97
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.12 E-value=1.5e-10 Score=82.18 Aligned_cols=86 Identities=23% Similarity=0.361 Sum_probs=59.4
Q ss_pred cccCccccceeccCCCcCcccccCcccCCCCCCCEEeCCCCCCCCccchhhcCCCCCCCeEecCCCCccccCcCcCCCCC
Q psy16571 4 EVKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESMLAWPE 83 (150)
Q Consensus 4 ~f~~l~~L~~L~l~~n~~l~~i~~~~~~~l~~L~~l~l~~n~~l~~~~~~~~~~l~~L~~l~l~~n~l~~lp~~~~~~~~ 83 (150)
.+.++++|++|++++| .++.++ .+..+++|+.|++++|. ++.+ ..+..+++|+.|++++|.++.++. +..+++
T Consensus 107 ~l~~l~~L~~L~L~~n-~i~~~~--~l~~l~~L~~L~l~~n~-l~~~--~~l~~l~~L~~L~L~~N~l~~~~~-l~~l~~ 179 (291)
T 1h6t_A 107 SLKDLKKLKSLSLEHN-GISDIN--GLVHLPQLESLYLGNNK-ITDI--TVLSRLTKLDTLSLEDNQISDIVP-LAGLTK 179 (291)
T ss_dssp GGTTCTTCCEEECTTS-CCCCCG--GGGGCTTCCEEECCSSC-CCCC--GGGGGCTTCSEEECCSSCCCCCGG-GTTCTT
T ss_pred hhccCCCCCEEECCCC-cCCCCh--hhcCCCCCCEEEccCCc-CCcc--hhhccCCCCCEEEccCCccccchh-hcCCCc
Confidence 3566777777777777 777763 36667777777777775 7666 245667777777777777776655 555677
Q ss_pred ccEEEccCCCccc
Q psy16571 84 LRTIDIAENPIEC 96 (150)
Q Consensus 84 L~~L~l~~N~~~c 96 (150)
|+.|++++|.+..
T Consensus 180 L~~L~L~~N~i~~ 192 (291)
T 1h6t_A 180 LQNLYLSKNHISD 192 (291)
T ss_dssp CCEEECCSSCCCB
T ss_pred cCEEECCCCcCCC
Confidence 7777777776654
No 98
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.12 E-value=2.1e-10 Score=89.38 Aligned_cols=85 Identities=18% Similarity=0.303 Sum_probs=37.7
Q ss_pred CccccceeccCCCcCcccccCcccCCCCCCCEEeCC------CCCCCCccchhhcCCCCCCCeEecCCCCccccCcCcCC
Q psy16571 7 GLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLN------KNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESMLA 80 (150)
Q Consensus 7 ~l~~L~~L~l~~n~~l~~i~~~~~~~l~~L~~l~l~------~n~~l~~~~~~~~~~l~~L~~l~l~~n~l~~lp~~~~~ 80 (150)
.+++|+.|++++| .++.++. .+..+++|+.|+++ +|. +....+..+..+++|+.|+|++|.+..+|..+.
T Consensus 511 ~l~~L~~L~Ls~N-~l~~ip~-~~~~l~~L~~L~Ls~N~~ls~N~-l~~~~p~~l~~l~~L~~L~Ls~N~l~~ip~~~~- 586 (636)
T 4eco_A 511 TLPYLVGIDLSYN-SFSKFPT-QPLNSSTLKGFGIRNQRDAQGNR-TLREWPEGITLCPSLTQLQIGSNDIRKVNEKIT- 586 (636)
T ss_dssp TCTTCCEEECCSS-CCSSCCC-GGGGCSSCCEEECCSCBCTTCCB-CCCCCCTTGGGCSSCCEEECCSSCCCBCCSCCC-
T ss_pred cCCCcCEEECCCC-CCCCcCh-hhhcCCCCCEEECCCCcccccCc-ccccChHHHhcCCCCCEEECCCCcCCccCHhHh-
Confidence 3444444444444 4444332 23334444444442 232 333333334444555555555555555554433
Q ss_pred CCCccEEEccCCCccc
Q psy16571 81 WPELRTIDIAENPIEC 96 (150)
Q Consensus 81 ~~~L~~L~l~~N~~~c 96 (150)
++|+.|++++|++.|
T Consensus 587 -~~L~~L~Ls~N~l~~ 601 (636)
T 4eco_A 587 -PNISVLDIKDNPNIS 601 (636)
T ss_dssp -TTCCEEECCSCTTCE
T ss_pred -CcCCEEECcCCCCcc
Confidence 455555555555554
No 99
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.12 E-value=9.3e-11 Score=83.81 Aligned_cols=92 Identities=13% Similarity=0.079 Sum_probs=73.4
Q ss_pred CccccCccccceeccCCCcCcccc---c-CcccCCCCCCCEEeCCCCCCCCcc---chhhcCCCCCCCeEecCCCCcccc
Q psy16571 2 EKEVKGLSYLKRLEITGASNLTRV---R-KGAFADNLNLETLTLNKNPKLKII---EEDALVGLPNLYHLNLKENAFTSF 74 (150)
Q Consensus 2 p~~f~~l~~L~~L~l~~n~~l~~i---~-~~~~~~l~~L~~l~l~~n~~l~~~---~~~~~~~l~~L~~l~l~~n~l~~l 74 (150)
|..|.++++|++|++++| .+.+. + ...+..+++|+.|++++|. ++.+ +...+..+++|+.|++++|.+...
T Consensus 166 ~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 243 (312)
T 1wwl_A 166 CEQVRVFPALSTLDLSDN-PELGERGLISALCPLKFPTLQVLALRNAG-METPSGVCSALAAARVQLQGLDLSHNSLRDA 243 (312)
T ss_dssp TTTCCCCSSCCEEECCSC-TTCHHHHHHHHSCTTSCTTCCEEECTTSC-CCCHHHHHHHHHHTTCCCSEEECTTSCCCSS
T ss_pred HHHhccCCCCCEEECCCC-CcCcchHHHHHHHhccCCCCCEEECCCCc-CcchHHHHHHHHhcCCCCCEEECCCCcCCcc
Confidence 467899999999999999 76542 2 2234789999999999996 9844 345556789999999999999975
Q ss_pred C--cCcCCCCCccEEEccCCCcc
Q psy16571 75 S--ESMLAWPELRTIDIAENPIE 95 (150)
Q Consensus 75 p--~~~~~~~~L~~L~l~~N~~~ 95 (150)
+ ..+..+++|+.|++++|.+.
T Consensus 244 ~~~~~~~~l~~L~~L~Ls~N~l~ 266 (312)
T 1wwl_A 244 AGAPSCDWPSQLNSLNLSFTGLK 266 (312)
T ss_dssp CCCSCCCCCTTCCEEECTTSCCS
T ss_pred cchhhhhhcCCCCEEECCCCccC
Confidence 5 23444789999999999987
No 100
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.11 E-value=3.1e-10 Score=81.06 Aligned_cols=35 Identities=37% Similarity=0.524 Sum_probs=13.6
Q ss_pred CccccceeccCCCcCcccccCcccCCCCCCCEEeCCCC
Q psy16571 7 GLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKN 44 (150)
Q Consensus 7 ~l~~L~~L~l~~n~~l~~i~~~~~~~l~~L~~l~l~~n 44 (150)
++++|++|++++| .++.+++ +..+++|+.|++++|
T Consensus 105 ~l~~L~~L~l~~n-~l~~~~~--l~~l~~L~~L~l~~n 139 (308)
T 1h6u_A 105 GLQSIKTLDLTST-QITDVTP--LAGLSNLQVLYLDLN 139 (308)
T ss_dssp TCTTCCEEECTTS-CCCCCGG--GTTCTTCCEEECCSS
T ss_pred CCCCCCEEECCCC-CCCCchh--hcCCCCCCEEECCCC
Confidence 3333444444443 3333322 333444444444444
No 101
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.11 E-value=1.1e-10 Score=83.38 Aligned_cols=88 Identities=16% Similarity=0.237 Sum_probs=63.0
Q ss_pred ccCccccceeccCCCcCcccccCc---ccCCCCCCCEEeCCCCCCCCccchhhcCCC---CCCCeEecCCCCccccCcCc
Q psy16571 5 VKGLSYLKRLEITGASNLTRVRKG---AFADNLNLETLTLNKNPKLKIIEEDALVGL---PNLYHLNLKENAFTSFSESM 78 (150)
Q Consensus 5 f~~l~~L~~L~l~~n~~l~~i~~~---~~~~l~~L~~l~l~~n~~l~~~~~~~~~~l---~~L~~l~l~~n~l~~lp~~~ 78 (150)
+..+++|++|++++| .++.++.. .+..+++|+.|++++|. ++.+.+..+..+ ++|+.|++++|.++.+|..+
T Consensus 193 ~~~l~~L~~L~Ls~N-~l~~l~~~~~~l~~~l~~L~~L~Ls~N~-l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~ 270 (310)
T 4glp_A 193 PHKFPAIQNLALRNT-GMETPTGVCAALAAAGVQPHSLDLSHNS-LRATVNPSAPRCMWSSALNSLNLSFAGLEQVPKGL 270 (310)
T ss_dssp TTSSCCCCSCBCCSS-CCCCHHHHHHHHHHHTCCCSSEECTTSC-CCCCCCSCCSSCCCCTTCCCEECCSSCCCSCCSCC
T ss_pred hhcCCCCCEEECCCC-CCCchHHHHHHHHhcCCCCCEEECCCCC-CCccchhhHHhccCcCcCCEEECCCCCCCchhhhh
Confidence 356778888888888 77655432 34567788888888885 777644334443 68888888888888887766
Q ss_pred CCCCCccEEEccCCCccc
Q psy16571 79 LAWPELRTIDIAENPIEC 96 (150)
Q Consensus 79 ~~~~~L~~L~l~~N~~~c 96 (150)
+ ++|+.|++++|.+.-
T Consensus 271 ~--~~L~~L~Ls~N~l~~ 286 (310)
T 4glp_A 271 P--AKLRVLDLSSNRLNR 286 (310)
T ss_dssp C--SCCSCEECCSCCCCS
T ss_pred c--CCCCEEECCCCcCCC
Confidence 4 678888888887764
No 102
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.10 E-value=4.2e-10 Score=80.36 Aligned_cols=83 Identities=25% Similarity=0.403 Sum_probs=43.0
Q ss_pred ccCccccceeccCCCcCcccccCcccCCCCCCCEEeCCCCCCCCccchhhcCCCCCCCeEecCCCCccccCcCcCCCCCc
Q psy16571 5 VKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESMLAWPEL 84 (150)
Q Consensus 5 f~~l~~L~~L~l~~n~~l~~i~~~~~~~l~~L~~l~l~~n~~l~~~~~~~~~~l~~L~~l~l~~n~l~~lp~~~~~~~~L 84 (150)
+..+++|++|++++| .++.+++ +..+++|+.|++++|. ++.++ .+..+++|+.|++++|.++.++. +..+++|
T Consensus 59 ~~~l~~L~~L~L~~n-~i~~~~~--~~~l~~L~~L~L~~n~-l~~~~--~~~~l~~L~~L~l~~n~l~~~~~-l~~l~~L 131 (308)
T 1h6u_A 59 VQYLNNLIGLELKDN-QITDLAP--LKNLTKITELELSGNP-LKNVS--AIAGLQSIKTLDLTSTQITDVTP-LAGLSNL 131 (308)
T ss_dssp GGGCTTCCEEECCSS-CCCCCGG--GTTCCSCCEEECCSCC-CSCCG--GGTTCTTCCEEECTTSCCCCCGG-GTTCTTC
T ss_pred hhccCCCCEEEccCC-cCCCChh--HccCCCCCEEEccCCc-CCCch--hhcCCCCCCEEECCCCCCCCchh-hcCCCCC
Confidence 444555566666655 5555554 5555555555555553 55543 24445555555555555554443 3334444
Q ss_pred cEEEccCCCc
Q psy16571 85 RTIDIAENPI 94 (150)
Q Consensus 85 ~~L~l~~N~~ 94 (150)
+.|++++|.+
T Consensus 132 ~~L~l~~n~l 141 (308)
T 1h6u_A 132 QVLYLDLNQI 141 (308)
T ss_dssp CEEECCSSCC
T ss_pred CEEECCCCcc
Confidence 4444444443
No 103
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.10 E-value=2.6e-10 Score=87.86 Aligned_cols=84 Identities=25% Similarity=0.273 Sum_probs=74.0
Q ss_pred CccccCccccceeccCCCcCcccccCcccCCCCCCCEEeCCCCCCCCccc-hhhcCCCCCCCeEecCCCCccccCcCcCC
Q psy16571 2 EKEVKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIE-EDALVGLPNLYHLNLKENAFTSFSESMLA 80 (150)
Q Consensus 2 p~~f~~l~~L~~L~l~~n~~l~~i~~~~~~~l~~L~~l~l~~n~~l~~~~-~~~~~~l~~L~~l~l~~n~l~~lp~~~~~ 80 (150)
|..|.++++|+.|++++| .++.++ .+..+++|+.|++++|. ++.+. +..+..+++|+.|+|++|.++.+|+....
T Consensus 479 p~~~~~l~~L~~L~Ls~N-~l~~lp--~l~~l~~L~~L~Ls~N~-l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~ 554 (567)
T 1dce_A 479 PPALAALRCLEVLQASDN-ALENVD--GVANLPRLQELLLCNNR-LQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQER 554 (567)
T ss_dssp CGGGGGCTTCCEEECCSS-CCCCCG--GGTTCSSCCEEECCSSC-CCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTH
T ss_pred chhhhcCCCCCEEECCCC-CCCCCc--ccCCCCCCcEEECCCCC-CCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHH
Confidence 678999999999999999 999987 68999999999999996 99986 77789999999999999999998875543
Q ss_pred ----CCCccEEEc
Q psy16571 81 ----WPELRTIDI 89 (150)
Q Consensus 81 ----~~~L~~L~l 89 (150)
+++|+.|++
T Consensus 555 l~~~lp~L~~L~l 567 (567)
T 1dce_A 555 LAEMLPSVSSILT 567 (567)
T ss_dssp HHHHCTTCSEEEC
T ss_pred HHHHCcccCccCC
Confidence 678888753
No 104
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.10 E-value=3.6e-10 Score=79.05 Aligned_cols=88 Identities=25% Similarity=0.365 Sum_probs=42.9
Q ss_pred ccCccccceeccCCCcCcccccCcccCCCCCCCEEeCCCCCCCCccchh-------------------hcCCCCCCCeEe
Q psy16571 5 VKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEED-------------------ALVGLPNLYHLN 65 (150)
Q Consensus 5 f~~l~~L~~L~l~~n~~l~~i~~~~~~~l~~L~~l~l~~n~~l~~~~~~-------------------~~~~l~~L~~l~ 65 (150)
+..+++|+.|++++| .++.+++ +..+++|+.|++++|. ++.++.. .+..+++|+.|+
T Consensus 59 l~~l~~L~~L~L~~N-~i~~~~~--l~~l~~L~~L~L~~N~-l~~l~~~~~~~L~~L~L~~N~l~~~~~l~~l~~L~~L~ 134 (263)
T 1xeu_A 59 MQFFTNLKELHLSHN-QISDLSP--LKDLTKLEELSVNRNR-LKNLNGIPSACLSRLFLDNNELRDTDSLIHLKNLEILS 134 (263)
T ss_dssp GGGCTTCCEEECCSS-CCCCCGG--GTTCSSCCEEECCSSC-CSCCTTCCCSSCCEEECCSSCCSBSGGGTTCTTCCEEE
T ss_pred HhhCCCCCEEECCCC-ccCCChh--hccCCCCCEEECCCCc-cCCcCccccCcccEEEccCCccCCChhhcCcccccEEE
Confidence 344445555555555 5554443 4445555555555443 4443321 234455555555
Q ss_pred cCCCCccccCcCcCCCCCccEEEccCCCcccc
Q psy16571 66 LKENAFTSFSESMLAWPELRTIDIAENPIECG 97 (150)
Q Consensus 66 l~~n~l~~lp~~~~~~~~L~~L~l~~N~~~c~ 97 (150)
+++|.++.++ .+..+++|+.|++++|.+...
T Consensus 135 Ls~N~i~~~~-~l~~l~~L~~L~L~~N~i~~~ 165 (263)
T 1xeu_A 135 IRNNKLKSIV-MLGFLSKLEVLDLHGNEITNT 165 (263)
T ss_dssp CTTSCCCBCG-GGGGCTTCCEEECTTSCCCBC
T ss_pred CCCCcCCCCh-HHccCCCCCEEECCCCcCcch
Confidence 5555555543 233455555555555555443
No 105
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.10 E-value=1.4e-10 Score=90.34 Aligned_cols=87 Identities=21% Similarity=0.294 Sum_probs=44.6
Q ss_pred CccccceeccCCCcCcccccCcccCCCCCCCEEeCCCCCCCCccchhhcCCCC-------CCCeEecCCCCccccCcCcC
Q psy16571 7 GLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLP-------NLYHLNLKENAFTSFSESML 79 (150)
Q Consensus 7 ~l~~L~~L~l~~n~~l~~i~~~~~~~l~~L~~l~l~~n~~l~~~~~~~~~~l~-------~L~~l~l~~n~l~~lp~~~~ 79 (150)
.+.+|+.|++++| .++.++...+..+++|+.|++++|. ++.++...+.... +|+.|++++|.++.+|..++
T Consensus 431 ~~~~L~~L~Ls~N-~l~~lp~~~~~~l~~L~~L~Ls~N~-l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~ 508 (636)
T 4eco_A 431 KGINVSSINLSNN-QISKFPKELFSTGSPLSSINLMGNM-LTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFR 508 (636)
T ss_dssp CCCCEEEEECCSS-CCCSCCTHHHHTTCCCSEEECCSSC-CSBCCSSSSEETTEECTTGGGCCEEECCSSCCCBCCGGGS
T ss_pred cCCCCCEEECcCC-ccCcCCHHHHccCCCCCEEECCCCC-CCCcCHHHhccccccccccCCccEEECcCCcCCccChhhh
Confidence 3345555555555 5555555444445555555555553 5544444333222 45555555555555555444
Q ss_pred --CCCCccEEEccCCCcc
Q psy16571 80 --AWPELRTIDIAENPIE 95 (150)
Q Consensus 80 --~~~~L~~L~l~~N~~~ 95 (150)
.+++|+.|++++|.+.
T Consensus 509 ~~~l~~L~~L~Ls~N~l~ 526 (636)
T 4eco_A 509 ATTLPYLVGIDLSYNSFS 526 (636)
T ss_dssp TTTCTTCCEEECCSSCCS
T ss_pred hccCCCcCEEECCCCCCC
Confidence 4555555555555544
No 106
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.10 E-value=2.7e-10 Score=82.11 Aligned_cols=92 Identities=20% Similarity=0.159 Sum_probs=80.2
Q ss_pred CccccCccccceeccCCCcCcccccCcccCCCCCCCEEeCCCCCCCCccchhhcCCCCCCCeEecCCCCcc-ccCcCcCC
Q psy16571 2 EKEVKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFT-SFSESMLA 80 (150)
Q Consensus 2 p~~f~~l~~L~~L~l~~n~~l~~i~~~~~~~l~~L~~l~l~~n~~l~~~~~~~~~~l~~L~~l~l~~n~l~-~lp~~~~~ 80 (150)
|..|.++++|++|++++| .++.+++ .+..+++|+.|++++|. +....+..|..+++|+.|++++|.+. .+|..+..
T Consensus 199 p~~l~~l~~L~~L~L~~N-~l~~l~~-~l~~l~~L~~L~Ls~n~-~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~ 275 (328)
T 4fcg_A 199 PASIANLQNLKSLKIRNS-PLSALGP-AIHHLPKLEELDLRGCT-ALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHR 275 (328)
T ss_dssp CGGGGGCTTCCEEEEESS-CCCCCCG-GGGGCTTCCEEECTTCT-TCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGG
T ss_pred hHhhcCCCCCCEEEccCC-CCCcCch-hhccCCCCCEEECcCCc-chhhhHHHhcCCCCCCEEECCCCCchhhcchhhhc
Confidence 567889999999999999 9998886 58889999999999986 76666677889999999999998665 78888888
Q ss_pred CCCccEEEccCCCccc
Q psy16571 81 WPELRTIDIAENPIEC 96 (150)
Q Consensus 81 ~~~L~~L~l~~N~~~c 96 (150)
+++|+.|++++|++..
T Consensus 276 l~~L~~L~L~~n~~~~ 291 (328)
T 4fcg_A 276 LTQLEKLDLRGCVNLS 291 (328)
T ss_dssp CTTCCEEECTTCTTCC
T ss_pred CCCCCEEeCCCCCchh
Confidence 9999999999988755
No 107
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.09 E-value=4.2e-10 Score=79.80 Aligned_cols=84 Identities=26% Similarity=0.377 Sum_probs=47.0
Q ss_pred ccCccccceeccCCCcCcccccCcccCCCCCCCEEeCCCCCCCCccchhhcCCCCCCCeEecCCCCccccCcCcCCCCCc
Q psy16571 5 VKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESMLAWPEL 84 (150)
Q Consensus 5 f~~l~~L~~L~l~~n~~l~~i~~~~~~~l~~L~~l~l~~n~~l~~~~~~~~~~l~~L~~l~l~~n~l~~lp~~~~~~~~L 84 (150)
+.++++|++|++++| .++.++. +..+++|+.|++++|. +..++ .+..+++|+.|++++|.++.+ ..+..+++|
T Consensus 86 l~~l~~L~~L~l~~n-~l~~~~~--l~~l~~L~~L~L~~n~-i~~~~--~l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L 158 (291)
T 1h6t_A 86 LANLKNLGWLFLDEN-KVKDLSS--LKDLKKLKSLSLEHNG-ISDIN--GLVHLPQLESLYLGNNKITDI-TVLSRLTKL 158 (291)
T ss_dssp GTTCTTCCEEECCSS-CCCCGGG--GTTCTTCCEEECTTSC-CCCCG--GGGGCTTCCEEECCSSCCCCC-GGGGGCTTC
T ss_pred cccCCCCCEEECCCC-cCCCChh--hccCCCCCEEECCCCc-CCCCh--hhcCCCCCCEEEccCCcCCcc-hhhccCCCC
Confidence 445555666666665 5555442 5556666666666664 55542 244556666666666666555 334445566
Q ss_pred cEEEccCCCcc
Q psy16571 85 RTIDIAENPIE 95 (150)
Q Consensus 85 ~~L~l~~N~~~ 95 (150)
+.|++++|.+.
T Consensus 159 ~~L~L~~N~l~ 169 (291)
T 1h6t_A 159 DTLSLEDNQIS 169 (291)
T ss_dssp SEEECCSSCCC
T ss_pred CEEEccCCccc
Confidence 66666666554
No 108
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.09 E-value=3.8e-10 Score=81.58 Aligned_cols=82 Identities=21% Similarity=0.296 Sum_probs=71.7
Q ss_pred ceeccCCCcCcccccCcccCCCCCCCEEeCCC-CCCCCccchhhcCCCCCCCeEecCCCCccccCcCc-CCCCCccEEEc
Q psy16571 12 KRLEITGASNLTRVRKGAFADNLNLETLTLNK-NPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESM-LAWPELRTIDI 89 (150)
Q Consensus 12 ~~L~l~~n~~l~~i~~~~~~~l~~L~~l~l~~-n~~l~~~~~~~~~~l~~L~~l~l~~n~l~~lp~~~-~~~~~L~~L~l 89 (150)
..++.++++.++.+|. +..+.+|+.|+|++ |. ++.+++..|..+++|+.|+|++|.|+.+++.. ..+++|+.|+|
T Consensus 11 ~~v~~~~~n~l~~ip~--l~~~~~L~~L~l~~~n~-l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l 87 (347)
T 2ifg_A 11 SGLRCTRDGALDSLHH--LPGAENLTELYIENQQH-LQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNL 87 (347)
T ss_dssp SCEECCSSCCCTTTTT--SCSCSCCSEEECCSCSS-CCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEEC
T ss_pred CEEEcCCCCCCCccCC--CCCCCCeeEEEccCCCC-CCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeC
Confidence 3567777537899887 88899999999996 86 99999999999999999999999999987754 56999999999
Q ss_pred cCCCccc
Q psy16571 90 AENPIEC 96 (150)
Q Consensus 90 ~~N~~~c 96 (150)
++|.+.-
T Consensus 88 ~~N~l~~ 94 (347)
T 2ifg_A 88 SFNALES 94 (347)
T ss_dssp CSSCCSC
T ss_pred CCCccce
Confidence 9999874
No 109
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.08 E-value=2.7e-10 Score=79.69 Aligned_cols=84 Identities=19% Similarity=0.235 Sum_probs=67.1
Q ss_pred cccCccccceeccCCCcCcccccCcccCCCCCCCEEeCCCCCCCCccchhhcCCCCCCCeEecCCCCccccCcCcCCCCC
Q psy16571 4 EVKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESMLAWPE 83 (150)
Q Consensus 4 ~f~~l~~L~~L~l~~n~~l~~i~~~~~~~l~~L~~l~l~~n~~l~~~~~~~~~~l~~L~~l~l~~n~l~~lp~~~~~~~~ 83 (150)
.+..+.+|+.|++++| .++.++ .+..+++|+.|++++|. ++.+++ +..+++|+.|++++|.++.+|.... ++
T Consensus 36 ~~~~l~~L~~L~l~~n-~i~~l~--~l~~l~~L~~L~L~~N~-i~~~~~--l~~l~~L~~L~L~~N~l~~l~~~~~--~~ 107 (263)
T 1xeu_A 36 SQKELSGVQNFNGDNS-NIQSLA--GMQFFTNLKELHLSHNQ-ISDLSP--LKDLTKLEELSVNRNRLKNLNGIPS--AC 107 (263)
T ss_dssp CHHHHTTCSEEECTTS-CCCCCT--TGGGCTTCCEEECCSSC-CCCCGG--GTTCSSCCEEECCSSCCSCCTTCCC--SS
T ss_pred chhhcCcCcEEECcCC-Ccccch--HHhhCCCCCEEECCCCc-cCCChh--hccCCCCCEEECCCCccCCcCcccc--Cc
Confidence 3567789999999999 999887 57889999999999996 999887 7889999999999999888765332 45
Q ss_pred ccEEEccCCCcc
Q psy16571 84 LRTIDIAENPIE 95 (150)
Q Consensus 84 L~~L~l~~N~~~ 95 (150)
|+.|++++|.+.
T Consensus 108 L~~L~L~~N~l~ 119 (263)
T 1xeu_A 108 LSRLFLDNNELR 119 (263)
T ss_dssp CCEEECCSSCCS
T ss_pred ccEEEccCCccC
Confidence 555555555443
No 110
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.07 E-value=1.2e-10 Score=83.17 Aligned_cols=93 Identities=12% Similarity=0.095 Sum_probs=75.3
Q ss_pred CccccCccccceeccCCCcCccc---ccC-cccCCCCCCCEEeCCCCCCCCccchh---hcCCCCCCCeEecCCCCcccc
Q psy16571 2 EKEVKGLSYLKRLEITGASNLTR---VRK-GAFADNLNLETLTLNKNPKLKIIEED---ALVGLPNLYHLNLKENAFTSF 74 (150)
Q Consensus 2 p~~f~~l~~L~~L~l~~n~~l~~---i~~-~~~~~l~~L~~l~l~~n~~l~~~~~~---~~~~l~~L~~l~l~~n~l~~l 74 (150)
+..|.++++|++|++++| .+.. ++. ..+..+++|+.|++++|. ++.++.. .+..+++|+.|++++|.+..+
T Consensus 162 ~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~ 239 (310)
T 4glp_A 162 CEQVRAFPALTSLDLSDN-PGLGERGLMAALCPHKFPAIQNLALRNTG-METPTGVCAALAAAGVQPHSLDLSHNSLRAT 239 (310)
T ss_dssp TTSCCCCTTCCEEECCSC-TTCHHHHHHTTSCTTSSCCCCSCBCCSSC-CCCHHHHHHHHHHHTCCCSSEECTTSCCCCC
T ss_pred HHHhccCCCCCEEECCCC-CCccchhhhHHHhhhcCCCCCEEECCCCC-CCchHHHHHHHHhcCCCCCEEECCCCCCCcc
Confidence 467889999999999999 7654 332 334678999999999996 9866543 346789999999999999976
Q ss_pred -CcCcCCC---CCccEEEccCCCccc
Q psy16571 75 -SESMLAW---PELRTIDIAENPIEC 96 (150)
Q Consensus 75 -p~~~~~~---~~L~~L~l~~N~~~c 96 (150)
|..+..+ ++|+.|++++|.+..
T Consensus 240 ~p~~~~~~~~~~~L~~L~Ls~N~l~~ 265 (310)
T 4glp_A 240 VNPSAPRCMWSSALNSLNLSFAGLEQ 265 (310)
T ss_dssp CCSCCSSCCCCTTCCCEECCSSCCCS
T ss_pred chhhHHhccCcCcCCEEECCCCCCCc
Confidence 7766665 699999999999883
No 111
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.06 E-value=2.2e-10 Score=83.12 Aligned_cols=87 Identities=24% Similarity=0.323 Sum_probs=68.5
Q ss_pred cccceeccCCCcCcccccCcccCCCCCCCEEeCCCCCCC-CccchhhcCCCCCCCe-EecCCCCccccCcCc-CCCCCcc
Q psy16571 9 SYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKL-KIIEEDALVGLPNLYH-LNLKENAFTSFSESM-LAWPELR 85 (150)
Q Consensus 9 ~~L~~L~l~~n~~l~~i~~~~~~~l~~L~~l~l~~n~~l-~~~~~~~~~~l~~L~~-l~l~~n~l~~lp~~~-~~~~~L~ 85 (150)
.++++|++++| .++.+++++|.++++|+.|++++|. + +.++..+|.+++++.. +.+.+|+++.++... ..+++|+
T Consensus 30 ~~l~~L~Ls~N-~i~~i~~~~f~~l~~L~~L~Ls~N~-i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~ 107 (350)
T 4ay9_X 30 RNAIELRFVLT-KLRVIQKGAFSGFGDLEKIEISQND-VLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQ 107 (350)
T ss_dssp TTCSEEEEESC-CCSEECTTSSTTCTTCCEEEEECCT-TCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCC
T ss_pred CCCCEEEccCC-cCCCcCHHHHcCCCCCCEEECcCCC-CCCccChhHhhcchhhhhhhcccCCcccccCchhhhhccccc
Confidence 46888899998 8999988888899999999999886 5 5567777888887765 556678888886654 4578888
Q ss_pred EEEccCCCcccc
Q psy16571 86 TIDIAENPIECG 97 (150)
Q Consensus 86 ~L~l~~N~~~c~ 97 (150)
.|++++|.+.-.
T Consensus 108 ~L~l~~n~l~~~ 119 (350)
T 4ay9_X 108 YLLISNTGIKHL 119 (350)
T ss_dssp EEEEEEECCSSC
T ss_pred cccccccccccC
Confidence 888888877543
No 112
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.02 E-value=1e-09 Score=85.10 Aligned_cols=85 Identities=24% Similarity=0.364 Sum_probs=48.0
Q ss_pred ccCccccceeccCCCcCcccccCcccCCCCCCCEEeCCCCCCCCccchhhcCCCCCCCeEecCCCCccccCcCcCCCCCc
Q psy16571 5 VKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESMLAWPEL 84 (150)
Q Consensus 5 f~~l~~L~~L~l~~n~~l~~i~~~~~~~l~~L~~l~l~~n~~l~~~~~~~~~~l~~L~~l~l~~n~l~~lp~~~~~~~~L 84 (150)
|..+++|+.|++++| .+..++ .+..+++|+.|++++|. +..+ ..+..+++|+.|+|++|.+..++. +..+++|
T Consensus 105 l~~l~~L~~L~Ls~N-~l~~l~--~l~~l~~L~~L~Ls~N~-l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L 177 (605)
T 1m9s_A 105 LKDLKKLKSLSLEHN-GISDIN--GLVHLPQLESLYLGNNK-ITDI--TVLSRLTKLDTLSLEDNQISDIVP-LAGLTKL 177 (605)
T ss_dssp STTCTTCCEEECTTS-CCCCCG--GGGGCTTCSEEECCSSC-CCCC--GGGGSCTTCSEEECCSSCCCCCGG-GTTCTTC
T ss_pred hccCCCCCEEEecCC-CCCCCc--cccCCCccCEEECCCCc-cCCc--hhhcccCCCCEEECcCCcCCCchh-hccCCCC
Confidence 445555555555555 555543 24555556666666554 5555 234556666666666666665544 4556666
Q ss_pred cEEEccCCCccc
Q psy16571 85 RTIDIAENPIEC 96 (150)
Q Consensus 85 ~~L~l~~N~~~c 96 (150)
+.|+|++|.+..
T Consensus 178 ~~L~Ls~N~i~~ 189 (605)
T 1m9s_A 178 QNLYLSKNHISD 189 (605)
T ss_dssp CEEECCSSCCCB
T ss_pred CEEECcCCCCCC
Confidence 666666666543
No 113
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.00 E-value=1.2e-09 Score=84.74 Aligned_cols=87 Identities=21% Similarity=0.313 Sum_probs=77.6
Q ss_pred cccCccccceeccCCCcCcccccCcccCCCCCCCEEeCCCCCCCCccchhhcCCCCCCCeEecCCCCccccCcCcCCCCC
Q psy16571 4 EVKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESMLAWPE 83 (150)
Q Consensus 4 ~f~~l~~L~~L~l~~n~~l~~i~~~~~~~l~~L~~l~l~~n~~l~~~~~~~~~~l~~L~~l~l~~n~l~~lp~~~~~~~~ 83 (150)
.|..+++|+.|++++| .+..+ ..+..+++|+.|++++|. +..+++ +..+++|+.|+|++|.|..++ .+..+++
T Consensus 126 ~l~~l~~L~~L~Ls~N-~l~~l--~~l~~l~~L~~L~Ls~N~-l~~~~~--l~~l~~L~~L~Ls~N~i~~l~-~l~~l~~ 198 (605)
T 1m9s_A 126 GLVHLPQLESLYLGNN-KITDI--TVLSRLTKLDTLSLEDNQ-ISDIVP--LAGLTKLQNLYLSKNHISDLR-ALAGLKN 198 (605)
T ss_dssp GGGGCTTCSEEECCSS-CCCCC--GGGGSCTTCSEEECCSSC-CCCCGG--GTTCTTCCEEECCSSCCCBCG-GGTTCTT
T ss_pred cccCCCccCEEECCCC-ccCCc--hhhcccCCCCEEECcCCc-CCCchh--hccCCCCCEEECcCCCCCCCh-HHccCCC
Confidence 4778899999999999 99988 368899999999999996 998877 788999999999999999985 4777999
Q ss_pred ccEEEccCCCcccc
Q psy16571 84 LRTIDIAENPIECG 97 (150)
Q Consensus 84 L~~L~l~~N~~~c~ 97 (150)
|+.|+|++|++...
T Consensus 199 L~~L~L~~N~l~~~ 212 (605)
T 1m9s_A 199 LDVLELFSQECLNK 212 (605)
T ss_dssp CSEEECCSEEEECC
T ss_pred CCEEEccCCcCcCC
Confidence 99999999988654
No 114
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=98.97 E-value=9.6e-10 Score=88.42 Aligned_cols=62 Identities=19% Similarity=0.292 Sum_probs=24.7
Q ss_pred cCCCCCCCEEeCCCCCCCCccchhhcCCCCCCCeEecCCCCccccCcCcCCCCC-ccEEEccCCCc
Q psy16571 30 FADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESMLAWPE-LRTIDIAENPI 94 (150)
Q Consensus 30 ~~~l~~L~~l~l~~n~~l~~~~~~~~~~l~~L~~l~l~~n~l~~lp~~~~~~~~-L~~L~l~~N~~ 94 (150)
+..+++|+.|++++|. +..++ .|..+++|+.|+|++|.+..+|..+..+++ |+.|++++|.+
T Consensus 569 l~~L~~L~~L~Ls~N~-l~~lp--~~~~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~L 631 (876)
T 4ecn_A 569 LQKMVKLGLLDCVHNK-VRHLE--AFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKL 631 (876)
T ss_dssp HTTCTTCCEEECTTSC-CCBCC--CCCTTSEESEEECCSSCCSCCCTTSCEECTTCCEEECCSSCC
T ss_pred hhcCCCCCEEECCCCC-cccch--hhcCCCcceEEECcCCccccchHHHhhccccCCEEECcCCCC
Confidence 3334444444444442 33333 233344444444444444444433333333 44444444433
No 115
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=98.97 E-value=3.2e-09 Score=76.50 Aligned_cols=82 Identities=23% Similarity=0.413 Sum_probs=54.2
Q ss_pred ccCccccceeccCCCcCcccccCcccCCCCCCCEEeCCCCCCCCccchhhcCCCCCCCeEecCCCCccccCcCcCCCCCc
Q psy16571 5 VKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESMLAWPEL 84 (150)
Q Consensus 5 f~~l~~L~~L~l~~n~~l~~i~~~~~~~l~~L~~l~l~~n~~l~~~~~~~~~~l~~L~~l~l~~n~l~~lp~~~~~~~~L 84 (150)
|..+++|++|++++| .++.+++ +..+++|+.|++++|. +..++ .+..+++|+.|++++|.+..++. +..+++|
T Consensus 62 ~~~~~~L~~L~l~~n-~i~~~~~--~~~l~~L~~L~L~~n~-i~~~~--~~~~l~~L~~L~l~~n~i~~~~~-~~~l~~L 134 (347)
T 4fmz_A 62 IEYLTNLEYLNLNGN-QITDISP--LSNLVKLTNLYIGTNK-ITDIS--ALQNLTNLRELYLNEDNISDISP-LANLTKM 134 (347)
T ss_dssp GGGCTTCCEEECCSS-CCCCCGG--GTTCTTCCEEECCSSC-CCCCG--GGTTCTTCSEEECTTSCCCCCGG-GTTCTTC
T ss_pred hhhcCCccEEEccCC-ccccchh--hhcCCcCCEEEccCCc-ccCch--HHcCCCcCCEEECcCCcccCchh-hccCCce
Confidence 555667777777777 7776654 6667777777777774 66653 35667777777777777766655 4455666
Q ss_pred cEEEccCCC
Q psy16571 85 RTIDIAENP 93 (150)
Q Consensus 85 ~~L~l~~N~ 93 (150)
+.|++++|.
T Consensus 135 ~~L~l~~n~ 143 (347)
T 4fmz_A 135 YSLNLGANH 143 (347)
T ss_dssp CEEECTTCT
T ss_pred eEEECCCCC
Confidence 666666653
No 116
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=98.96 E-value=1.7e-09 Score=86.94 Aligned_cols=85 Identities=21% Similarity=0.297 Sum_probs=41.3
Q ss_pred CccccceeccCCCcCcccccCcccCCCC-------CCCEEeCCCCCCCCccchhhc-CCCCCCCeEecCCCCccccCcCc
Q psy16571 7 GLSYLKRLEITGASNLTRVRKGAFADNL-------NLETLTLNKNPKLKIIEEDAL-VGLPNLYHLNLKENAFTSFSESM 78 (150)
Q Consensus 7 ~l~~L~~L~l~~n~~l~~i~~~~~~~l~-------~L~~l~l~~n~~l~~~~~~~~-~~l~~L~~l~l~~n~l~~lp~~~ 78 (150)
.+++|+.|++++| .++.++...+.... +|+.|++++|. +..++...+ ..+++|+.|+|++|.+..+|..+
T Consensus 695 ~l~~L~~L~Ls~N-~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~-L~~lp~~l~~~~l~~L~~L~Ls~N~L~~lp~~l 772 (876)
T 4ecn_A 695 TGSPISTIILSNN-LMTSIPENSLKPKDGNYKNTYLLTTIDLRFNK-LTSLSDDFRATTLPYLSNMDVSYNCFSSFPTQP 772 (876)
T ss_dssp TTCCCSEEECCSC-CCSCCCTTSSSCTTSCCTTGGGCCEEECCSSC-CCCCCGGGSTTTCTTCCEEECCSSCCSSCCCGG
T ss_pred cCCCCCEEECCCC-cCCccChHHhccccccccccCCccEEECCCCC-CccchHHhhhccCCCcCEEEeCCCCCCccchhh
Confidence 3445555555555 55555444443221 45555555553 554443321 24555555555555555555545
Q ss_pred CCCCCccEEEccCCC
Q psy16571 79 LAWPELRTIDIAENP 93 (150)
Q Consensus 79 ~~~~~L~~L~l~~N~ 93 (150)
..+++|+.|++++|+
T Consensus 773 ~~L~~L~~L~Ls~N~ 787 (876)
T 4ecn_A 773 LNSSQLKAFGIRHQR 787 (876)
T ss_dssp GGCTTCCEEECCCCB
T ss_pred hcCCCCCEEECCCCC
Confidence 555555555555433
No 117
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=98.96 E-value=3.2e-09 Score=79.78 Aligned_cols=81 Identities=27% Similarity=0.373 Sum_probs=42.8
Q ss_pred ccCccccceeccCCCcCcccccCcccCCCCCCCEEeCCCCCCCCccchhhcCCCCCCCeEecCCCCccccCcCcCCCCCc
Q psy16571 5 VKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESMLAWPEL 84 (150)
Q Consensus 5 f~~l~~L~~L~l~~n~~l~~i~~~~~~~l~~L~~l~l~~n~~l~~~~~~~~~~l~~L~~l~l~~n~l~~lp~~~~~~~~L 84 (150)
|..+++|++|++++| .++.++ +..+++|+.|++++|. ++.++ +..+++|+.|++++|.++.++ +..+++|
T Consensus 60 l~~l~~L~~L~Ls~n-~l~~~~---~~~l~~L~~L~Ls~N~-l~~~~---~~~l~~L~~L~L~~N~l~~l~--~~~l~~L 129 (457)
T 3bz5_A 60 IEKLTGLTKLICTSN-NITTLD---LSQNTNLTYLACDSNK-LTNLD---VTPLTKLTYLNCDTNKLTKLD--VSQNPLL 129 (457)
T ss_dssp GGGCTTCSEEECCSS-CCSCCC---CTTCTTCSEEECCSSC-CSCCC---CTTCTTCCEEECCSSCCSCCC--CTTCTTC
T ss_pred hcccCCCCEEEccCC-cCCeEc---cccCCCCCEEECcCCC-Cceee---cCCCCcCCEEECCCCcCCeec--CCCCCcC
Confidence 444555555555555 555542 4445555555555553 55542 445555555555555555543 3445555
Q ss_pred cEEEccCCCcc
Q psy16571 85 RTIDIAENPIE 95 (150)
Q Consensus 85 ~~L~l~~N~~~ 95 (150)
+.|++++|.+.
T Consensus 130 ~~L~l~~N~l~ 140 (457)
T 3bz5_A 130 TYLNCARNTLT 140 (457)
T ss_dssp CEEECTTSCCS
T ss_pred CEEECCCCccc
Confidence 55555555543
No 118
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=98.96 E-value=1.7e-09 Score=81.16 Aligned_cols=85 Identities=24% Similarity=0.351 Sum_probs=70.2
Q ss_pred ccCccccceeccCCCcCcccccCcccCCCCCCCEEeCCCCCCCCccchhhcCCCCCCCeEecCCCCccccCcCcCCCCCc
Q psy16571 5 VKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESMLAWPEL 84 (150)
Q Consensus 5 f~~l~~L~~L~l~~n~~l~~i~~~~~~~l~~L~~l~l~~n~~l~~~~~~~~~~l~~L~~l~l~~n~l~~lp~~~~~~~~L 84 (150)
+..+++|++|++++| .++.+++ +..+++|+.|++++|. +..+++ +..+++|+.|++++|.+..++. +..+++|
T Consensus 64 ~~~l~~L~~L~Ls~n-~l~~~~~--~~~l~~L~~L~l~~n~-l~~~~~--~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L 136 (466)
T 1o6v_A 64 VEYLNNLTQINFSNN-QLTDITP--LKNLTKLVDILMNNNQ-IADITP--LANLTNLTGLTLFNNQITDIDP-LKNLTNL 136 (466)
T ss_dssp GGGCTTCCEEECCSS-CCCCCGG--GTTCTTCCEEECCSSC-CCCCGG--GTTCTTCCEEECCSSCCCCCGG-GTTCTTC
T ss_pred hhhhcCCCEEECCCC-ccCCchh--hhccccCCEEECCCCc-cccChh--hcCCCCCCEEECCCCCCCCChH-HcCCCCC
Confidence 566788889999998 8888876 7888899999999885 888776 7788899999999998888765 6678888
Q ss_pred cEEEccCCCccc
Q psy16571 85 RTIDIAENPIEC 96 (150)
Q Consensus 85 ~~L~l~~N~~~c 96 (150)
+.|++++|.+..
T Consensus 137 ~~L~l~~n~l~~ 148 (466)
T 1o6v_A 137 NRLELSSNTISD 148 (466)
T ss_dssp SEEEEEEEEECC
T ss_pred CEEECCCCccCC
Confidence 888888887654
No 119
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=98.94 E-value=1.5e-09 Score=83.66 Aligned_cols=79 Identities=23% Similarity=0.314 Sum_probs=60.6
Q ss_pred ccccceeccCCCcCcccccCcccCCCCCCCEEeCCCCCCCCccchhhcCCCCCC-------CeEecCCCCccccCcCcCC
Q psy16571 8 LSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNL-------YHLNLKENAFTSFSESMLA 80 (150)
Q Consensus 8 l~~L~~L~l~~n~~l~~i~~~~~~~l~~L~~l~l~~n~~l~~~~~~~~~~l~~L-------~~l~l~~n~l~~lp~~~~~ 80 (150)
+++|+.|++++| .++.++. |. ++|+.|++++|. ++.++. |.. +| +.|+|++|.|+.+|..++.
T Consensus 159 l~~L~~L~Ls~N-~L~~lp~--l~--~~L~~L~Ls~N~-L~~lp~--~~~--~L~~~~~~L~~L~Ls~N~l~~lp~~l~~ 228 (571)
T 3cvr_A 159 PTSLEVLSVRNN-QLTFLPE--LP--ESLEALDVSTNL-LESLPA--VPV--RNHHSEETEIFFRCRENRITHIPENILS 228 (571)
T ss_dssp CTTCCEEECCSS-CCSCCCC--CC--TTCCEEECCSSC-CSSCCC--CC----------CCEEEECCSSCCCCCCGGGGG
T ss_pred CCCcCEEECCCC-CCCCcch--hh--CCCCEEECcCCC-CCchhh--HHH--hhhcccccceEEecCCCcceecCHHHhc
Confidence 456777777777 7777665 43 778888888885 877765 333 66 8899999999999988888
Q ss_pred CCCccEEEccCCCccc
Q psy16571 81 WPELRTIDIAENPIEC 96 (150)
Q Consensus 81 ~~~L~~L~l~~N~~~c 96 (150)
+++|+.|++++|++.+
T Consensus 229 l~~L~~L~L~~N~l~~ 244 (571)
T 3cvr_A 229 LDPTCTIILEDNPLSS 244 (571)
T ss_dssp SCTTEEEECCSSSCCH
T ss_pred CCCCCEEEeeCCcCCC
Confidence 9999999999999876
No 120
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=98.93 E-value=1.8e-09 Score=81.07 Aligned_cols=84 Identities=18% Similarity=0.247 Sum_probs=75.0
Q ss_pred cccCccccceeccCCCcCcccccCcccCCCCCCCEEeCCCCCCCCccchhhcCCCCCCCeEecCCCCccccCcCcCCCCC
Q psy16571 4 EVKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESMLAWPE 83 (150)
Q Consensus 4 ~f~~l~~L~~L~l~~n~~l~~i~~~~~~~l~~L~~l~l~~n~~l~~~~~~~~~~l~~L~~l~l~~n~l~~lp~~~~~~~~ 83 (150)
.+..++.|++|++++| .++.++ .+..+++|+.|++++|. ++.++ +..+++|+.|++++|.++.++ +..+++
T Consensus 37 ~~~~l~~L~~L~Ls~n-~l~~~~--~l~~l~~L~~L~Ls~n~-l~~~~---~~~l~~L~~L~Ls~N~l~~~~--~~~l~~ 107 (457)
T 3bz5_A 37 SEEQLATLTSLDCHNS-SITDMT--GIEKLTGLTKLICTSNN-ITTLD---LSQNTNLTYLACDSNKLTNLD--VTPLTK 107 (457)
T ss_dssp EHHHHTTCCEEECCSS-CCCCCT--TGGGCTTCSEEECCSSC-CSCCC---CTTCTTCSEEECCSSCCSCCC--CTTCTT
T ss_pred ChhHcCCCCEEEccCC-CcccCh--hhcccCCCCEEEccCCc-CCeEc---cccCCCCCEEECcCCCCceee--cCCCCc
Confidence 4667899999999999 999986 58889999999999996 99884 778999999999999999985 677899
Q ss_pred ccEEEccCCCccc
Q psy16571 84 LRTIDIAENPIEC 96 (150)
Q Consensus 84 L~~L~l~~N~~~c 96 (150)
|+.|++++|.+..
T Consensus 108 L~~L~L~~N~l~~ 120 (457)
T 3bz5_A 108 LTYLNCDTNKLTK 120 (457)
T ss_dssp CCEEECCSSCCSC
T ss_pred CCEEECCCCcCCe
Confidence 9999999998865
No 121
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.92 E-value=2.6e-12 Score=86.26 Aligned_cols=92 Identities=26% Similarity=0.375 Sum_probs=55.6
Q ss_pred cccCccccceeccCCCcCcccccCcccCCCCCCCEEeCCCCCCCCccchh---------------------hcCCCCCCC
Q psy16571 4 EVKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEED---------------------ALVGLPNLY 62 (150)
Q Consensus 4 ~f~~l~~L~~L~l~~n~~l~~i~~~~~~~l~~L~~l~l~~n~~l~~~~~~---------------------~~~~l~~L~ 62 (150)
.|..+++|++|++++| .++.++ .+..+++|+.|++++|. ++.++.. .+..+++|+
T Consensus 43 ~~~~l~~L~~L~ls~n-~l~~l~--~~~~l~~L~~L~l~~n~-l~~l~~~~~~~~~L~~L~L~~N~l~~l~~~~~l~~L~ 118 (198)
T 1ds9_A 43 TLSTLKACKHLALSTN-NIEKIS--SLSGMENLRILSLGRNL-IKKIENLDAVADTLEELWISYNQIASLSGIEKLVNLR 118 (198)
T ss_dssp HHHHTTTCSEEECSEE-EESCCC--CHHHHTTCCEEEEEEEE-ECSCSSHHHHHHHCSEEEEEEEECCCHHHHHHHHHSS
T ss_pred HHhcCCCCCEEECCCC-CCcccc--ccccCCCCCEEECCCCC-cccccchhhcCCcCCEEECcCCcCCcCCccccCCCCC
Confidence 4455555666666655 555544 34445555555555553 4443321 233456677
Q ss_pred eEecCCCCccccCc--CcCCCCCccEEEccCCCcccccC
Q psy16571 63 HLNLKENAFTSFSE--SMLAWPELRTIDIAENPIECGCN 99 (150)
Q Consensus 63 ~l~l~~n~l~~lp~--~~~~~~~L~~L~l~~N~~~c~c~ 99 (150)
.|++++|.++.++. .+..+++|+.|++++|++.+.|.
T Consensus 119 ~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~ 157 (198)
T 1ds9_A 119 VLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYK 157 (198)
T ss_dssp EEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHH
T ss_pred EEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccc
Confidence 77777777776554 45567888899999998888764
No 122
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=98.90 E-value=5.9e-09 Score=78.22 Aligned_cols=82 Identities=24% Similarity=0.316 Sum_probs=36.3
Q ss_pred ccccceeccCCCcCcccccCcccCCCCCCCEEeCCCCCCCCccchhhcCCCCCCCeEecCCCCccccCcCcCCCCCccEE
Q psy16571 8 LSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESMLAWPELRTI 87 (150)
Q Consensus 8 l~~L~~L~l~~n~~l~~i~~~~~~~l~~L~~l~l~~n~~l~~~~~~~~~~l~~L~~l~l~~n~l~~lp~~~~~~~~L~~L 87 (150)
+++|+.|++++| .+..+++ +..+++|+.|++++|. +..+++ +..+++|+.|++++|.+..++. +..+++|+.|
T Consensus 264 l~~L~~L~l~~n-~l~~~~~--~~~l~~L~~L~L~~n~-l~~~~~--~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L 336 (466)
T 1o6v_A 264 LTKLTELKLGAN-QISNISP--LAGLTALTNLELNENQ-LEDISP--ISNLKNLTYLTLYFNNISDISP-VSSLTKLQRL 336 (466)
T ss_dssp CTTCSEEECCSS-CCCCCGG--GTTCTTCSEEECCSSC-CSCCGG--GGGCTTCSEEECCSSCCSCCGG-GGGCTTCCEE
T ss_pred CCCCCEEECCCC-ccCcccc--ccCCCccCeEEcCCCc-ccCchh--hcCCCCCCEEECcCCcCCCchh-hccCccCCEe
Confidence 333444444443 3333332 3334444444444443 444332 3344445555555555444333 3334555555
Q ss_pred EccCCCccc
Q psy16571 88 DIAENPIEC 96 (150)
Q Consensus 88 ~l~~N~~~c 96 (150)
++++|.+..
T Consensus 337 ~l~~n~l~~ 345 (466)
T 1o6v_A 337 FFYNNKVSD 345 (466)
T ss_dssp ECCSSCCCC
T ss_pred ECCCCccCC
Confidence 555555543
No 123
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.89 E-value=4.1e-09 Score=75.79 Aligned_cols=84 Identities=24% Similarity=0.281 Sum_probs=72.4
Q ss_pred ccccceeccCCCcCcccccCcccCCCCCCCEEeCCCCCCCCccchhhcCCCCCCC-eEecCCCCccccCcCcCC-CCCcc
Q psy16571 8 LSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLY-HLNLKENAFTSFSESMLA-WPELR 85 (150)
Q Consensus 8 l~~L~~L~l~~n~~l~~i~~~~~~~l~~L~~l~l~~n~~l~~~~~~~~~~l~~L~-~l~l~~n~l~~lp~~~~~-~~~L~ 85 (150)
+.+|+.|++++| .++.++..+|.++.+|+.+++++| +..++..+|.++.+|+ .+.+.+ .++.++...|. +++|+
T Consensus 225 ~~~L~~l~L~~n-~i~~I~~~aF~~~~~L~~l~l~~n--i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~ 300 (329)
T 3sb4_A 225 MPNLVSLDISKT-NATTIPDFTFAQKKYLLKIKLPHN--LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLR 300 (329)
T ss_dssp CTTCCEEECTTB-CCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEE
T ss_pred cCCCeEEECCCC-CcceecHhhhhCCCCCCEEECCcc--cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCC
Confidence 678999999998 899999999999999999999876 8889999999999999 999988 78888776554 88999
Q ss_pred EEEccCCCcc
Q psy16571 86 TIDIAENPIE 95 (150)
Q Consensus 86 ~L~l~~N~~~ 95 (150)
.+++.+|.+.
T Consensus 301 ~l~l~~n~i~ 310 (329)
T 3sb4_A 301 YVLATGDKIT 310 (329)
T ss_dssp EEEECSSCCC
T ss_pred EEEeCCCccC
Confidence 9999877654
No 124
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=98.89 E-value=2.1e-09 Score=77.99 Aligned_cols=74 Identities=20% Similarity=0.366 Sum_probs=63.3
Q ss_pred CccccCccccceeccCCCcCc-ccccCcccCCCCCCCEE-eCCCCCCCCccchhhcCCCCCCCeEecCCCCccccCcC
Q psy16571 2 EKEVKGLSYLKRLEITGASNL-TRVRKGAFADNLNLETL-TLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSES 77 (150)
Q Consensus 2 p~~f~~l~~L~~L~l~~n~~l-~~i~~~~~~~l~~L~~l-~l~~n~~l~~~~~~~~~~l~~L~~l~l~~n~l~~lp~~ 77 (150)
+++|.++++|++|++++| .+ +.++.++|.+++++..+ .+.+|. +..+++.+|..+++|+.+++++|++..+|..
T Consensus 47 ~~~f~~l~~L~~L~Ls~N-~i~~~i~~~~f~~L~~l~~~l~~~~N~-l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~ 122 (350)
T 4ay9_X 47 KGAFSGFGDLEKIEISQN-DVLEVIEADVFSNLPKLHEIRIEKANN-LLYINPEAFQNLPNLQYLLISNTGIKHLPDV 122 (350)
T ss_dssp TTSSTTCTTCCEEEEECC-TTCCEECTTSBCSCTTCCEEEEEEETT-CCEECTTSBCCCTTCCEEEEEEECCSSCCCC
T ss_pred HHHHcCCCCCCEEECcCC-CCCCccChhHhhcchhhhhhhcccCCc-ccccCchhhhhccccccccccccccccCCch
Confidence 467999999999999999 75 66888899999988764 556675 9999999999999999999999999877653
No 125
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.88 E-value=7.1e-09 Score=74.52 Aligned_cols=84 Identities=19% Similarity=0.254 Sum_probs=72.7
Q ss_pred CccccCccccceeccCCCcCcccccCcccCCCCCCC-EEeCCCCCCCCccchhhcCCCCCCCeEecCCCCccccCcCcCC
Q psy16571 2 EKEVKGLSYLKRLEITGASNLTRVRKGAFADNLNLE-TLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESMLA 80 (150)
Q Consensus 2 p~~f~~l~~L~~L~l~~n~~l~~i~~~~~~~l~~L~-~l~l~~n~~l~~~~~~~~~~l~~L~~l~l~~n~l~~lp~~~~~ 80 (150)
+.+|.++.+|+.|++++| ++.++..+|.++.+|+ .+.+++ . ++.+.+.+|.++++|+.+++.+|.++.++...|.
T Consensus 243 ~~aF~~~~~L~~l~l~~n--i~~I~~~aF~~~~~L~~~l~l~~-~-l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~ 318 (329)
T 3sb4_A 243 DFTFAQKKYLLKIKLPHN--LKTIGQRVFSNCGRLAGTLELPA-S-VTAIEFGAFMGCDNLRYVLATGDKITTLGDELFG 318 (329)
T ss_dssp TTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEEEECT-T-CCEECTTTTTTCTTEEEEEECSSCCCEECTTTTC
T ss_pred HhhhhCCCCCCEEECCcc--cceehHHHhhCChhccEEEEEcc-c-ceEEchhhhhCCccCCEEEeCCCccCccchhhhc
Confidence 467999999999999976 8889999999999999 999987 4 8899999999999999999999999999886665
Q ss_pred -CCCccEEEc
Q psy16571 81 -WPELRTIDI 89 (150)
Q Consensus 81 -~~~L~~L~l 89 (150)
+++|+.++.
T Consensus 319 ~~~~L~~ly~ 328 (329)
T 3sb4_A 319 NGVPSKLIYK 328 (329)
T ss_dssp TTCCCCEEEC
T ss_pred CCcchhhhcc
Confidence 778888764
No 126
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=98.88 E-value=5.7e-09 Score=81.23 Aligned_cols=88 Identities=26% Similarity=0.329 Sum_probs=68.5
Q ss_pred cccceeccCCCcCcccccCcccCCCCCCCEEeCCCCCCCCccchhhcCCCCCCCeEecCCCCccccCcCcCCCCCccEEE
Q psy16571 9 SYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESMLAWPELRTID 88 (150)
Q Consensus 9 ~~L~~L~l~~n~~l~~i~~~~~~~l~~L~~l~l~~n~~l~~~~~~~~~~l~~L~~l~l~~n~l~~lp~~~~~~~~L~~L~ 88 (150)
++|+.|++++| .++.++ ..+++|+.|++++|. ++.++. .+++|+.|+|++|.|+.+|..+..+++|+.|+
T Consensus 221 ~~L~~L~Ls~N-~L~~lp----~~l~~L~~L~Ls~N~-L~~lp~----~~~~L~~L~Ls~N~L~~lp~~l~~l~~L~~L~ 290 (622)
T 3g06_A 221 SGLKELIVSGN-RLTSLP----VLPSELKELMVSGNR-LTSLPM----LPSGLLSLSVYRNQLTRLPESLIHLSSETTVN 290 (622)
T ss_dssp TTCCEEECCSS-CCSCCC----CCCTTCCEEECCSSC-CSCCCC----CCTTCCEEECCSSCCCSCCGGGGGSCTTCEEE
T ss_pred CCCCEEEccCC-ccCcCC----CCCCcCcEEECCCCC-CCcCCc----ccccCcEEeCCCCCCCcCCHHHhhccccCEEE
Confidence 56777888887 777766 345778888888885 887765 46789999999999999998888899999999
Q ss_pred ccCCCcccccChHHHHHHH
Q psy16571 89 IAENPIECGCNILWLREML 107 (150)
Q Consensus 89 l~~N~~~c~c~~~~l~~~~ 107 (150)
+++|++.. .....+....
T Consensus 291 L~~N~l~~-~~~~~l~~L~ 308 (622)
T 3g06_A 291 LEGNPLSE-RTLQALREIT 308 (622)
T ss_dssp CCSCCCCH-HHHHHHHHHH
T ss_pred ecCCCCCC-cCHHHHHhcc
Confidence 99999975 3334444433
No 127
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=98.85 E-value=1.3e-09 Score=79.86 Aligned_cols=104 Identities=22% Similarity=0.212 Sum_probs=76.0
Q ss_pred cccCccccceeccCCCcCcc-----cccCcccCCCCCCCEEeCCCCCCCCccc----hhhc--CCCCCCCeEecCCCCcc
Q psy16571 4 EVKGLSYLKRLEITGASNLT-----RVRKGAFADNLNLETLTLNKNPKLKIIE----EDAL--VGLPNLYHLNLKENAFT 72 (150)
Q Consensus 4 ~f~~l~~L~~L~l~~n~~l~-----~i~~~~~~~l~~L~~l~l~~n~~l~~~~----~~~~--~~l~~L~~l~l~~n~l~ 72 (150)
.+..+++|+.|++++| .++ .++ ..+..+++|+.|++++|. ++... +..+ ..+++|+.|+|++|.++
T Consensus 211 ~l~~~~~L~~L~Ls~n-~l~~~g~~~l~-~~l~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~ 287 (386)
T 2ca6_A 211 GLAYCQELKVLDLQDN-TFTHLGSSALA-IALKSWPNLRELGLNDCL-LSARGAAAVVDAFSKLENIGLQTLRLQYNEIE 287 (386)
T ss_dssp TGGGCTTCCEEECCSS-CCHHHHHHHHH-HHGGGCTTCCEEECTTCC-CCHHHHHHHHHHHHTCSSCCCCEEECCSSCCB
T ss_pred HhhcCCCccEEECcCC-CCCcHHHHHHH-HHHccCCCcCEEECCCCC-CchhhHHHHHHHHhhccCCCeEEEECcCCcCC
Confidence 5667788888888888 773 333 356778888888888885 77652 2334 33788999999999888
Q ss_pred c-----cCcCc-CCCCCccEEEccCCCcccccC-hHHHHHHHhhc
Q psy16571 73 S-----FSESM-LAWPELRTIDIAENPIECGCN-ILWLREMLVRR 110 (150)
Q Consensus 73 ~-----lp~~~-~~~~~L~~L~l~~N~~~c~c~-~~~l~~~~~~~ 110 (150)
. +|..+ .++++|+.|++++|++..... +..+...+.+.
T Consensus 288 ~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~~~~~l~~~l~~~ 332 (386)
T 2ca6_A 288 LDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDDVVDEIREVFSTR 332 (386)
T ss_dssp HHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCceEEEccCCcCCcchhHHHHHHHHhhhc
Confidence 7 77766 347899999999999987765 45566655543
No 128
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.82 E-value=4.2e-12 Score=85.20 Aligned_cols=88 Identities=19% Similarity=0.175 Sum_probs=69.7
Q ss_pred ccCccccceeccCCCcCcccccCc------ccCCCCCCCEEeCCCCCCCCccchhhcCCCCCCCeEecCCCCccccCcCc
Q psy16571 5 VKGLSYLKRLEITGASNLTRVRKG------AFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESM 78 (150)
Q Consensus 5 f~~l~~L~~L~l~~n~~l~~i~~~------~~~~l~~L~~l~l~~n~~l~~~~~~~~~~l~~L~~l~l~~n~l~~lp~~~ 78 (150)
|.....+..++++.+ .+....+. .+..+++|+.|++++|. ++.++ .+..+++|+.|++++|.+..+|..+
T Consensus 14 ~~~~~~l~~l~l~~~-~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~-l~~l~--~~~~l~~L~~L~l~~n~l~~l~~~~ 89 (198)
T 1ds9_A 14 FEERKSVVATEAEKV-ELHGMIPPIEKMDATLSTLKACKHLALSTNN-IEKIS--SLSGMENLRILSLGRNLIKKIENLD 89 (198)
T ss_dssp HHHTTCCCCTTCSEE-ECCBCCTTCCCCHHHHHHTTTCSEEECSEEE-ESCCC--CHHHHTTCCEEEEEEEEECSCSSHH
T ss_pred HHhcccccCcchhee-EeccccCcHhhhhHHHhcCCCCCEEECCCCC-Ccccc--ccccCCCCCEEECCCCCcccccchh
Confidence 344556777777777 66554443 68889999999999996 99876 5678899999999999999988755
Q ss_pred CCCCCccEEEccCCCccc
Q psy16571 79 LAWPELRTIDIAENPIEC 96 (150)
Q Consensus 79 ~~~~~L~~L~l~~N~~~c 96 (150)
..+++|+.|++++|.+..
T Consensus 90 ~~~~~L~~L~L~~N~l~~ 107 (198)
T 1ds9_A 90 AVADTLEELWISYNQIAS 107 (198)
T ss_dssp HHHHHCSEEEEEEEECCC
T ss_pred hcCCcCCEEECcCCcCCc
Confidence 556788999998888764
No 129
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=98.75 E-value=3.9e-08 Score=75.81 Aligned_cols=33 Identities=27% Similarity=0.471 Sum_probs=13.1
Q ss_pred CCCeEecCCCCccccCcCcCCCCCccEEEccCCCcc
Q psy16571 60 NLYHLNLKENAFTSFSESMLAWPELRTIDIAENPIE 95 (150)
Q Consensus 60 ~L~~l~l~~n~l~~lp~~~~~~~~L~~L~l~~N~~~ 95 (150)
+|+.|+|++|.++.+|. +. ++|+.|++++|.+.
T Consensus 161 ~L~~L~Ls~N~L~~lp~-l~--~~L~~L~Ls~N~L~ 193 (571)
T 3cvr_A 161 SLEVLSVRNNQLTFLPE-LP--ESLEALDVSTNLLE 193 (571)
T ss_dssp TCCEEECCSSCCSCCCC-CC--TTCCEEECCSSCCS
T ss_pred CcCEEECCCCCCCCcch-hh--CCCCEEECcCCCCC
Confidence 34444444444444333 11 34444444444433
No 130
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=98.69 E-value=6.1e-09 Score=75.81 Aligned_cols=62 Identities=29% Similarity=0.406 Sum_probs=33.3
Q ss_pred ccceeccCCCcCcccccC----cccCCCC-CCCEEeCCCCCCCCccchhhcCCC-----CCCCeEecCCCCccc
Q psy16571 10 YLKRLEITGASNLTRVRK----GAFADNL-NLETLTLNKNPKLKIIEEDALVGL-----PNLYHLNLKENAFTS 73 (150)
Q Consensus 10 ~L~~L~l~~n~~l~~i~~----~~~~~l~-~L~~l~l~~n~~l~~~~~~~~~~l-----~~L~~l~l~~n~l~~ 73 (150)
+|++|++++| .++.++. ..|..++ +|+.|++++|. ++......+..+ ++|+.|+|++|.++.
T Consensus 23 ~L~~L~Ls~n-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~ 94 (362)
T 3goz_A 23 GVTSLDLSLN-NLYSISTVELIQAFANTPASVTSLNLSGNS-LGFKNSDELVQILAAIPANVTSLNLSGNFLSY 94 (362)
T ss_dssp TCCEEECTTS-CGGGSCHHHHHHHHHTCCTTCCEEECCSSC-GGGSCHHHHHHHHHTSCTTCCEEECCSSCGGG
T ss_pred CceEEEccCC-CCChHHHHHHHHHHHhCCCceeEEECcCCC-CCHHHHHHHHHHHhccCCCccEEECcCCcCCh
Confidence 3666666666 5555554 4455555 56666666664 555444333332 555555555555553
No 131
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=98.67 E-value=1e-08 Score=73.57 Aligned_cols=84 Identities=15% Similarity=0.212 Sum_probs=40.9
Q ss_pred CccccceeccCCCcCcccc-cCcccCCCCCCCEEeCCCCCCCCccchhhcCCCCCCCeEecCCC-Cccc--cCcCcCCCC
Q psy16571 7 GLSYLKRLEITGASNLTRV-RKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKEN-AFTS--FSESMLAWP 82 (150)
Q Consensus 7 ~l~~L~~L~l~~n~~l~~i-~~~~~~~l~~L~~l~l~~n~~l~~~~~~~~~~l~~L~~l~l~~n-~l~~--lp~~~~~~~ 82 (150)
.+++|++|++++| .+... .+..+..+++|+.|++++|. +....+..+..+++|+.|++++| .++. ++..+..++
T Consensus 91 ~~~~L~~L~L~~~-~l~~~~~~~~~~~~~~L~~L~L~~~~-l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~ 168 (336)
T 2ast_B 91 SPFRVQHMDLSNS-VIEVSTLHGILSQCSKLQNLSLEGLR-LSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCS 168 (336)
T ss_dssp CCBCCCEEECTTC-EECHHHHHHHHTTBCCCSEEECTTCB-CCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCT
T ss_pred cCCCCCEEEccCC-CcCHHHHHHHHhhCCCCCEEeCcCcc-cCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCC
Confidence 3455555555555 44432 22344555555555555553 54444444445555555555555 3442 333333344
Q ss_pred CccEEEccCC
Q psy16571 83 ELRTIDIAEN 92 (150)
Q Consensus 83 ~L~~L~l~~N 92 (150)
+|+.|++++|
T Consensus 169 ~L~~L~l~~~ 178 (336)
T 2ast_B 169 RLDELNLSWC 178 (336)
T ss_dssp TCCEEECCCC
T ss_pred CCCEEcCCCC
Confidence 4555555444
No 132
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=98.65 E-value=1.4e-07 Score=70.87 Aligned_cols=20 Identities=20% Similarity=0.532 Sum_probs=8.8
Q ss_pred ccCccccceeccCCCcCcccc
Q psy16571 5 VKGLSYLKRLEITGASNLTRV 25 (150)
Q Consensus 5 f~~l~~L~~L~l~~n~~l~~i 25 (150)
|.++++|++|++++| .++.+
T Consensus 149 ~~~l~~L~~L~l~~N-~l~~l 168 (454)
T 1jl5_A 149 LQNSSFLKIIDVDNN-SLKKL 168 (454)
T ss_dssp CTTCTTCCEEECCSS-CCSCC
T ss_pred cCCCCCCCEEECCCC-cCccc
Confidence 344444444444444 44433
No 133
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=98.63 E-value=1.6e-07 Score=70.54 Aligned_cols=78 Identities=18% Similarity=0.328 Sum_probs=51.3
Q ss_pred cccceeccCCCcCcccccCcccCCCCCCCEEeCCCCCCCCccchhhcCCCCCCCeEecCCCCccccCcCcCCCCCccEEE
Q psy16571 9 SYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESMLAWPELRTID 88 (150)
Q Consensus 9 ~~L~~L~l~~n~~l~~i~~~~~~~l~~L~~l~l~~n~~l~~~~~~~~~~l~~L~~l~l~~n~l~~lp~~~~~~~~L~~L~ 88 (150)
++|++|++++| .++.++ .|..+++|+.+++++|. ++.++.. ..+|+.|++++|.++.+| .+..+++|+.|+
T Consensus 131 ~~L~~L~L~~n-~l~~lp--~~~~l~~L~~L~l~~N~-l~~lp~~----~~~L~~L~L~~n~l~~l~-~~~~l~~L~~L~ 201 (454)
T 1jl5_A 131 PLLEYLGVSNN-QLEKLP--ELQNSSFLKIIDVDNNS-LKKLPDL----PPSLEFIAAGNNQLEELP-ELQNLPFLTAIY 201 (454)
T ss_dssp TTCCEEECCSS-CCSSCC--CCTTCTTCCEEECCSSC-CSCCCCC----CTTCCEEECCSSCCSSCC-CCTTCTTCCEEE
T ss_pred CCCCEEECcCC-CCCCCc--ccCCCCCCCEEECCCCc-CcccCCC----cccccEEECcCCcCCcCc-cccCCCCCCEEE
Confidence 46777777777 777665 36777777777777774 7665432 246667777777766665 355566667777
Q ss_pred ccCCCcc
Q psy16571 89 IAENPIE 95 (150)
Q Consensus 89 l~~N~~~ 95 (150)
+++|.+.
T Consensus 202 l~~N~l~ 208 (454)
T 1jl5_A 202 ADNNSLK 208 (454)
T ss_dssp CCSSCCS
T ss_pred CCCCcCC
Confidence 7666654
No 134
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=98.62 E-value=1.2e-07 Score=73.77 Aligned_cols=57 Identities=26% Similarity=0.304 Sum_probs=27.9
Q ss_pred cccceeccCCCcCcccccCcccCCCCCCCEEeCCCCCCCCccchhhcCCCCCCCeEecCCCCccccC
Q psy16571 9 SYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFS 75 (150)
Q Consensus 9 ~~L~~L~l~~n~~l~~i~~~~~~~l~~L~~l~l~~n~~l~~~~~~~~~~l~~L~~l~l~~n~l~~lp 75 (150)
++|+.|++++| .++.++. .+++|+.|++++|. ++.++. .+++|+.|++++|.++.+|
T Consensus 61 ~~L~~L~L~~N-~l~~lp~----~l~~L~~L~Ls~N~-l~~lp~----~l~~L~~L~Ls~N~l~~l~ 117 (622)
T 3g06_A 61 AHITTLVIPDN-NLTSLPA----LPPELRTLEVSGNQ-LTSLPV----LPPGLLELSIFSNPLTHLP 117 (622)
T ss_dssp TTCSEEEECSC-CCSCCCC----CCTTCCEEEECSCC-CSCCCC----CCTTCCEEEECSCCCCCCC
T ss_pred CCCcEEEecCC-CCCCCCC----cCCCCCEEEcCCCc-CCcCCC----CCCCCCEEECcCCcCCCCC
Confidence 34555555555 5555543 24455555555553 554443 2344444444444444443
No 135
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=98.56 E-value=9.7e-09 Score=74.75 Aligned_cols=90 Identities=20% Similarity=0.241 Sum_probs=54.4
Q ss_pred cccCcc-ccceeccCCCcCcccccCcccCCC-----CCCCEEeCCCCCCCCccchhh----cCCC-CCCCeEecCCCCcc
Q psy16571 4 EVKGLS-YLKRLEITGASNLTRVRKGAFADN-----LNLETLTLNKNPKLKIIEEDA----LVGL-PNLYHLNLKENAFT 72 (150)
Q Consensus 4 ~f~~l~-~L~~L~l~~n~~l~~i~~~~~~~l-----~~L~~l~l~~n~~l~~~~~~~----~~~l-~~L~~l~l~~n~l~ 72 (150)
+|.+++ +|++|++++| .++......+..+ ++|+.|++++|. ++...+.. +... ++|+.|++++|.++
T Consensus 45 ~l~~~~~~L~~L~Ls~N-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~ 122 (362)
T 3goz_A 45 AFANTPASVTSLNLSGN-SLGFKNSDELVQILAAIPANVTSLNLSGNF-LSYKSSDELVKTLAAIPFTITVLDLGWNDFS 122 (362)
T ss_dssp HHHTCCTTCCEEECCSS-CGGGSCHHHHHHHHHTSCTTCCEEECCSSC-GGGSCHHHHHHHHHTSCTTCCEEECCSSCGG
T ss_pred HHHhCCCceeEEECcCC-CCCHHHHHHHHHHHhccCCCccEEECcCCc-CChHHHHHHHHHHHhCCCCccEEECcCCcCC
Confidence 345565 6777777777 7776655555543 677777777775 66655442 2233 66777777777766
Q ss_pred ccCcCc-----CC-CCCccEEEccCCCcc
Q psy16571 73 SFSESM-----LA-WPELRTIDIAENPIE 95 (150)
Q Consensus 73 ~lp~~~-----~~-~~~L~~L~l~~N~~~ 95 (150)
..+... .. ..+|+.|++++|.+.
T Consensus 123 ~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~ 151 (362)
T 3goz_A 123 SKSSSEFKQAFSNLPASITSLNLRGNDLG 151 (362)
T ss_dssp GSCHHHHHHHHTTSCTTCCEEECTTSCGG
T ss_pred cHHHHHHHHHHHhCCCceeEEEccCCcCC
Confidence 544321 11 246666666666654
No 136
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=98.52 E-value=1.6e-08 Score=72.51 Aligned_cols=89 Identities=20% Similarity=0.213 Sum_probs=62.7
Q ss_pred cccCccccceeccCCCcCcccccCcccCCCCCCCEEeCCCCCCCCcc-chhhcCCCCCCCeEecCCC-Cccc--cCcCcC
Q psy16571 4 EVKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKII-EEDALVGLPNLYHLNLKEN-AFTS--FSESML 79 (150)
Q Consensus 4 ~f~~l~~L~~L~l~~n~~l~~i~~~~~~~l~~L~~l~l~~n~~l~~~-~~~~~~~l~~L~~l~l~~n-~l~~--lp~~~~ 79 (150)
.+..+++|++|++++| .++...+..+..+++|+.|++++|..++.. .+..+..+++|+.|++++| .++. ++..+.
T Consensus 113 ~~~~~~~L~~L~L~~~-~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~ 191 (336)
T 2ast_B 113 ILSQCSKLQNLSLEGL-RLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVA 191 (336)
T ss_dssp HHTTBCCCSEEECTTC-BCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHH
T ss_pred HHhhCCCCCEEeCcCc-ccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHH
Confidence 4667788888888888 777655556777888888888888326542 2333566788888888888 7763 455455
Q ss_pred CCC-CccEEEccCCC
Q psy16571 80 AWP-ELRTIDIAENP 93 (150)
Q Consensus 80 ~~~-~L~~L~l~~N~ 93 (150)
.++ +|+.|++++|.
T Consensus 192 ~l~~~L~~L~l~~~~ 206 (336)
T 2ast_B 192 HVSETITQLNLSGYR 206 (336)
T ss_dssp HSCTTCCEEECCSCG
T ss_pred hcccCCCEEEeCCCc
Confidence 566 77777777774
No 137
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.51 E-value=4.6e-07 Score=67.02 Aligned_cols=85 Identities=12% Similarity=0.194 Sum_probs=39.1
Q ss_pred cccCccccceeccCCCcCcc-----cccCcccCCCCCCCEEeCCCCCCCCccchhhcCCCCCCCeEecCCCCccccCcCc
Q psy16571 4 EVKGLSYLKRLEITGASNLT-----RVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESM 78 (150)
Q Consensus 4 ~f~~l~~L~~L~l~~n~~l~-----~i~~~~~~~l~~L~~l~l~~n~~l~~~~~~~~~~l~~L~~l~l~~n~l~~lp~~~ 78 (150)
+|.++.+|+.+.+.+| .+. .++..+|.++++|+.+.+. +. +..+...+|.++.+|+.+.|..+ ++.++...
T Consensus 266 aF~~c~~L~~l~l~~~-~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~-i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~a 341 (401)
T 4fdw_A 266 AFYYCPELAEVTTYGS-TFNDDPEAMIHPYCLEGCPKLARFEIP-ES-IRILGQGLLGGNRKVTQLTIPAN-VTQINFSA 341 (401)
T ss_dssp TTTTCTTCCEEEEESS-CCCCCTTCEECTTTTTTCTTCCEECCC-TT-CCEECTTTTTTCCSCCEEEECTT-CCEECTTS
T ss_pred HhhCCCCCCEEEeCCc-cccCCcccEECHHHhhCCccCCeEEeC-Cc-eEEEhhhhhcCCCCccEEEECcc-ccEEcHHh
Confidence 4444455555554443 332 3444455555555555554 22 44454455555555555555332 44444433
Q ss_pred CCCCCccEEEccCC
Q psy16571 79 LAWPELRTIDIAEN 92 (150)
Q Consensus 79 ~~~~~L~~L~l~~N 92 (150)
|...+|+.+.+.+|
T Consensus 342 F~~~~L~~l~l~~n 355 (401)
T 4fdw_A 342 FNNTGIKEVKVEGT 355 (401)
T ss_dssp SSSSCCCEEEECCS
T ss_pred CCCCCCCEEEEcCC
Confidence 33115555555444
No 138
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=98.44 E-value=7.3e-08 Score=70.56 Aligned_cols=87 Identities=17% Similarity=0.245 Sum_probs=40.2
Q ss_pred cCccccceeccCCCcCcccccCc----ccCCCCCCCEEeCCCCCCCCccc---hhh-------cCCCCCCCeEecCCCCc
Q psy16571 6 KGLSYLKRLEITGASNLTRVRKG----AFADNLNLETLTLNKNPKLKIIE---EDA-------LVGLPNLYHLNLKENAF 71 (150)
Q Consensus 6 ~~l~~L~~L~l~~n~~l~~i~~~----~~~~l~~L~~l~l~~n~~l~~~~---~~~-------~~~l~~L~~l~l~~n~l 71 (150)
..+++|+.|++++| .++..... .+..+++|+.|++++|. +..+. +.. +..+++|+.|+|++|.+
T Consensus 29 ~~~~~L~~L~L~~n-~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~-~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l 106 (386)
T 2ca6_A 29 LEDDSVKEIVLSGN-TIGTEAARWLSENIASKKDLEIAEFSDIF-TGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAF 106 (386)
T ss_dssp HHCSCCCEEECTTS-EECHHHHHHHHHTTTTCTTCCEEECCSCC-TTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCC
T ss_pred hcCCCccEEECCCC-CCCHHHHHHHHHHHHhCCCccEEeCcccc-cCccccchhHHHHHHHHHHhhCCcccEEECCCCcC
Confidence 34445555555555 55443221 24445555555555542 32211 111 23455555555555555
Q ss_pred cc-----cCcCcCCCCCccEEEccCCCc
Q psy16571 72 TS-----FSESMLAWPELRTIDIAENPI 94 (150)
Q Consensus 72 ~~-----lp~~~~~~~~L~~L~l~~N~~ 94 (150)
.. ++..+..+++|+.|++++|.+
T Consensus 107 ~~~~~~~l~~~l~~~~~L~~L~L~~n~l 134 (386)
T 2ca6_A 107 GPTAQEPLIDFLSKHTPLEHLYLHNNGL 134 (386)
T ss_dssp CTTTHHHHHHHHHHCTTCCEEECCSSCC
T ss_pred CHHHHHHHHHHHHhCCCCCEEECcCCCC
Confidence 43 333333345555555555544
No 139
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.41 E-value=1.6e-07 Score=65.92 Aligned_cols=88 Identities=19% Similarity=0.160 Sum_probs=61.7
Q ss_pred cCccccce--eccCCCcCcccccC---cccCCCCCCCEEeCCCCCCCCccch--hhcCCCCCCCeEecCCCCccccCcCc
Q psy16571 6 KGLSYLKR--LEITGASNLTRVRK---GAFADNLNLETLTLNKNPKLKIIEE--DALVGLPNLYHLNLKENAFTSFSESM 78 (150)
Q Consensus 6 ~~l~~L~~--L~l~~n~~l~~i~~---~~~~~l~~L~~l~l~~n~~l~~~~~--~~~~~l~~L~~l~l~~n~l~~lp~~~ 78 (150)
...+.|.. ++++.| ....++. .....+++|+.|++++|. ++.+.. ..+..+++|+.|+|++|.|..+.. +
T Consensus 138 ~~dp~L~~~~l~l~~N-~~~~~~~~l~i~~~~l~~L~~L~Ls~N~-l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~-l 214 (267)
T 3rw6_A 138 RSDPDLVAQNIDVVLN-RRSCMAATLRIIEENIPELLSLNLSNNR-LYRLDDMSSIVQKAPNLKILNLSGNELKSERE-L 214 (267)
T ss_dssp GGCHHHHHTTCCCCTT-SHHHHHHHHHHHHHHCTTCCEEECTTSC-CCCCGGGTTHHHHSTTCCEEECTTSCCCSGGG-G
T ss_pred CCCcchhhcCccccCC-HHHHHHHHHHHHHhhCCCCCEEECCCCC-CCCCccchhHHhhCCCCCEEECCCCccCCchh-h
Confidence 33344444 667776 5444431 222457899999999996 988764 445578999999999999997732 3
Q ss_pred CCCC--CccEEEccCCCccc
Q psy16571 79 LAWP--ELRTIDIAENPIEC 96 (150)
Q Consensus 79 ~~~~--~L~~L~l~~N~~~c 96 (150)
..+. +|+.|++.+|++.-
T Consensus 215 ~~l~~l~L~~L~L~~Npl~~ 234 (267)
T 3rw6_A 215 DKIKGLKLEELWLDGNSLCD 234 (267)
T ss_dssp GGGTTSCCSEEECTTSTTGG
T ss_pred hhcccCCcceEEccCCcCcc
Confidence 3333 89999999999753
No 140
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.39 E-value=6.6e-08 Score=67.80 Aligned_cols=80 Identities=29% Similarity=0.426 Sum_probs=58.9
Q ss_pred cCccccceeccCCCcCcccccC--cccCCCCCCCEEeCCCCCCCCccch-hhcCCCCCCCeEecCCCCccc-cCcC----
Q psy16571 6 KGLSYLKRLEITGASNLTRVRK--GAFADNLNLETLTLNKNPKLKIIEE-DALVGLPNLYHLNLKENAFTS-FSES---- 77 (150)
Q Consensus 6 ~~l~~L~~L~l~~n~~l~~i~~--~~~~~l~~L~~l~l~~n~~l~~~~~-~~~~~l~~L~~l~l~~n~l~~-lp~~---- 77 (150)
.+++.|+.|++++| .++.++. ..+..+++|+.|+|++|. +..+.. ..+..+ +|+.|+|++|.+.. +|..
T Consensus 167 ~~l~~L~~L~Ls~N-~l~~l~~l~~~~~~l~~L~~L~Ls~N~-i~~~~~l~~l~~l-~L~~L~L~~Npl~~~~~~~~~y~ 243 (267)
T 3rw6_A 167 ENIPELLSLNLSNN-RLYRLDDMSSIVQKAPNLKILNLSGNE-LKSERELDKIKGL-KLEELWLDGNSLCDTFRDQSTYI 243 (267)
T ss_dssp HHCTTCCEEECTTS-CCCCCGGGTTHHHHSTTCCEEECTTSC-CCSGGGGGGGTTS-CCSEEECTTSTTGGGCSSHHHHH
T ss_pred hhCCCCCEEECCCC-CCCCCccchhHHhhCCCCCEEECCCCc-cCCchhhhhcccC-CcceEEccCCcCccccCcchhHH
Confidence 35778999999999 9988763 445578999999999996 888732 334444 89999999999973 5421
Q ss_pred ---cCCCCCccEEE
Q psy16571 78 ---MLAWPELRTID 88 (150)
Q Consensus 78 ---~~~~~~L~~L~ 88 (150)
+..+++|+.|+
T Consensus 244 ~~il~~~P~L~~LD 257 (267)
T 3rw6_A 244 SAIRERFPKLLRLD 257 (267)
T ss_dssp HHHHHHCTTCCEES
T ss_pred HHHHHHCcccCeEC
Confidence 22367777664
No 141
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.37 E-value=1.9e-06 Score=63.78 Aligned_cols=63 Identities=21% Similarity=0.290 Sum_probs=41.6
Q ss_pred CccccCccccceeccCCCcCcccccCcccCCCCCCCEEeCCCCCCCCccchhhcCCCCCCCeEecCC
Q psy16571 2 EKEVKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKE 68 (150)
Q Consensus 2 p~~f~~l~~L~~L~l~~n~~l~~i~~~~~~~l~~L~~l~l~~n~~l~~~~~~~~~~l~~L~~l~l~~ 68 (150)
+.+|.++.+|+.+++++| .++.++..+|. ..+|+.+.+..+ +..+...+|.++++|+.+.+..
T Consensus 173 ~~aF~~c~~L~~l~l~~n-~l~~I~~~aF~-~~~L~~l~lp~~--l~~I~~~aF~~~~~L~~l~l~~ 235 (401)
T 4fdw_A 173 EDIFYYCYNLKKADLSKT-KITKLPASTFV-YAGIEEVLLPVT--LKEIGSQAFLKTSQLKTIEIPE 235 (401)
T ss_dssp SSTTTTCTTCCEEECTTS-CCSEECTTTTT-TCCCSEEECCTT--CCEECTTTTTTCTTCCCEECCT
T ss_pred HHHhhCcccCCeeecCCC-cceEechhhEe-ecccCEEEeCCc--hheehhhHhhCCCCCCEEecCC
Confidence 356777777777777776 66666666665 356666666533 6666666666666666666654
No 142
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=98.30 E-value=1.2e-07 Score=70.68 Aligned_cols=39 Identities=26% Similarity=0.276 Sum_probs=19.6
Q ss_pred CCCCCeEecCCCCcc-----ccCcCcCCCCCccEEEccCCCccc
Q psy16571 58 LPNLYHLNLKENAFT-----SFSESMLAWPELRTIDIAENPIEC 96 (150)
Q Consensus 58 l~~L~~l~l~~n~l~-----~lp~~~~~~~~L~~L~l~~N~~~c 96 (150)
.++|+.|++++|.++ .++..+..+++|+.|++++|++..
T Consensus 369 ~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~ 412 (461)
T 1z7x_W 369 GSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGD 412 (461)
T ss_dssp TCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCH
T ss_pred CCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCH
Confidence 345555555555554 334433345555555555555543
No 143
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.29 E-value=3.5e-06 Score=61.89 Aligned_cols=85 Identities=19% Similarity=0.366 Sum_probs=54.6
Q ss_pred cccCccccceeccCCCcCcccccCcccCCCCCCCEEeCCCCCCCCccchhhcCCCCCCCeEecCCCCccccCcCcCC-CC
Q psy16571 4 EVKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESMLA-WP 82 (150)
Q Consensus 4 ~f~~l~~L~~L~l~~n~~l~~i~~~~~~~l~~L~~l~l~~n~~l~~~~~~~~~~l~~L~~l~l~~n~l~~lp~~~~~-~~ 82 (150)
+|.++..|+.+.+.. .+..++..+|.++.+|+.+.+..+ ++.+...+|.++.+|+.+.|..+ ++.+....|. +.
T Consensus 283 aF~~c~~L~~i~l~~--~i~~I~~~aF~~c~~L~~i~lp~~--v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~ 357 (394)
T 4gt6_A 283 AFMNCPALQDIEFSS--RITELPESVFAGCISLKSIDIPEG--ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCT 357 (394)
T ss_dssp TTTTCTTCCEEECCT--TCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCT
T ss_pred ccccccccccccCCC--cccccCceeecCCCCcCEEEeCCc--ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCC
Confidence 455555566665542 466677777777777777777644 66677777777777777777543 6666655443 67
Q ss_pred CccEEEccCCC
Q psy16571 83 ELRTIDIAENP 93 (150)
Q Consensus 83 ~L~~L~l~~N~ 93 (150)
+|+.+.+.++.
T Consensus 358 ~L~~i~~~~~~ 368 (394)
T 4gt6_A 358 ALNNIEYSGSR 368 (394)
T ss_dssp TCCEEEESSCH
T ss_pred CCCEEEECCce
Confidence 77777776653
No 144
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.25 E-value=2.7e-07 Score=67.61 Aligned_cols=13 Identities=23% Similarity=0.434 Sum_probs=6.4
Q ss_pred CCccEEEccCCCc
Q psy16571 82 PELRTIDIAENPI 94 (150)
Q Consensus 82 ~~L~~L~l~~N~~ 94 (150)
++|+.|++++|++
T Consensus 239 ~~L~~L~Ls~N~i 251 (372)
T 3un9_A 239 PSLELLHLYFNEL 251 (372)
T ss_dssp SSCCEEECTTSSC
T ss_pred CCCCEEeccCCCC
Confidence 4455555555544
No 145
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.23 E-value=3.7e-06 Score=61.79 Aligned_cols=85 Identities=15% Similarity=0.278 Sum_probs=70.1
Q ss_pred ccccCccccceeccCCCcCcccccCcccCCCCCCCEEeCCCCCCCCccchhhcCCCCCCCeEecCCCCccccCcCcCC-C
Q psy16571 3 KEVKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESMLA-W 81 (150)
Q Consensus 3 ~~f~~l~~L~~L~l~~n~~l~~i~~~~~~~l~~L~~l~l~~n~~l~~~~~~~~~~l~~L~~l~l~~n~l~~lp~~~~~-~ 81 (150)
.+|.+..+|+.+.+.. .++.++..+|.++.+|+.+.+..+ ++.+...+|.++.+|+.+.+..+ ++.++...|. +
T Consensus 291 ~~F~~~~~L~~i~l~~--~i~~I~~~aF~~c~~L~~i~lp~~--v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C 365 (394)
T 4fs7_A 291 KTFYGCSSLTEVKLLD--SVKFIGEEAFESCTSLVSIDLPYL--VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGC 365 (394)
T ss_dssp TTTTTCTTCCEEEECT--TCCEECTTTTTTCTTCCEECCCTT--CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTC
T ss_pred cccccccccccccccc--ccceechhhhcCCCCCCEEEeCCc--ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCC
Confidence 4577788888888875 488899899999999999999754 88898899999999999999776 7888776665 7
Q ss_pred CCccEEEccCC
Q psy16571 82 PELRTIDIAEN 92 (150)
Q Consensus 82 ~~L~~L~l~~N 92 (150)
.+|+.+.+..+
T Consensus 366 ~~L~~i~lp~~ 376 (394)
T 4fs7_A 366 INLKKVELPKR 376 (394)
T ss_dssp TTCCEEEEEGG
T ss_pred CCCCEEEECCC
Confidence 88999988654
No 146
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=98.21 E-value=4.1e-07 Score=67.76 Aligned_cols=14 Identities=7% Similarity=0.195 Sum_probs=7.3
Q ss_pred CccEEEccCCCccc
Q psy16571 83 ELRTIDIAENPIEC 96 (150)
Q Consensus 83 ~L~~L~l~~N~~~c 96 (150)
+|+.|++++|.+..
T Consensus 314 ~L~~L~L~~n~l~~ 327 (461)
T 1z7x_W 314 QLESLWVKSCSFTA 327 (461)
T ss_dssp CCCEEECTTSCCBG
T ss_pred cceeeEcCCCCCch
Confidence 45555555555444
No 147
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.09 E-value=1e-05 Score=59.01 Aligned_cols=86 Identities=15% Similarity=0.235 Sum_probs=58.9
Q ss_pred ccccCccccceeccCCCcCcccccCcccCCCCCCCEEeCCCCCCCCccchhhcCCCCCCCeEecCCCCccccCcCcCC-C
Q psy16571 3 KEVKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESMLA-W 81 (150)
Q Consensus 3 ~~f~~l~~L~~L~l~~n~~l~~i~~~~~~~l~~L~~l~l~~n~~l~~~~~~~~~~l~~L~~l~l~~n~l~~lp~~~~~-~ 81 (150)
.+|.+...|+.+.+..+ ++.+...+|..+..|+.+.+..+ +..+...+|.++.+|+.+.+.++.+..++...|. +
T Consensus 234 ~~f~~~~~L~~i~lp~~--v~~I~~~aF~~~~~l~~i~l~~~--i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c 309 (379)
T 4h09_A 234 GAFYGMKALDEIAIPKN--VTSIGSFLLQNCTALKTLNFYAK--VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDC 309 (379)
T ss_dssp TTTTTCSSCCEEEECTT--CCEECTTTTTTCTTCCEEEECCC--CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTC
T ss_pred ccccCCccceEEEcCCC--ccEeCccccceeehhcccccccc--ceeccccccccccccccccccccccceehhhhhcCC
Confidence 45666777777777653 67777777777777777777543 6667777777777777777777777777665554 5
Q ss_pred CCccEEEccCC
Q psy16571 82 PELRTIDIAEN 92 (150)
Q Consensus 82 ~~L~~L~l~~N 92 (150)
.+|+.+.+..+
T Consensus 310 ~~L~~i~lp~~ 320 (379)
T 4h09_A 310 VKLSSVTLPTA 320 (379)
T ss_dssp TTCCEEECCTT
T ss_pred CCCCEEEcCcc
Confidence 67777776543
No 148
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.06 E-value=1.2e-06 Score=64.09 Aligned_cols=87 Identities=20% Similarity=0.229 Sum_probs=49.3
Q ss_pred ccccceeccCCCcCcccccCccc-----CCCCCCCEEeCCCCCCCCccchh----hcCCCCCCCeEecCCCCcccc----
Q psy16571 8 LSYLKRLEITGASNLTRVRKGAF-----ADNLNLETLTLNKNPKLKIIEED----ALVGLPNLYHLNLKENAFTSF---- 74 (150)
Q Consensus 8 l~~L~~L~l~~n~~l~~i~~~~~-----~~l~~L~~l~l~~n~~l~~~~~~----~~~~l~~L~~l~l~~n~l~~l---- 74 (150)
+.+|+.|++++| .++......+ ...+.|+.|++++|. ++..... .+...++|+.|+|++|.++..
T Consensus 125 L~~L~~L~Ls~n-~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~ 202 (372)
T 3un9_A 125 FLRARKLGLQLN-SLGPEACKDLRDLLLHDQCQITTLRLSNNP-LTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLEL 202 (372)
T ss_dssp HHTEEEEECCSS-CCCHHHHHHHHHHHHSTTCCCCEEECCSSC-CHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHH
T ss_pred HHhccHhhcCCC-CCCHHHHHHHHHHHHhcCCccceeeCCCCC-CChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHH
Confidence 345566666666 6554433222 234567777777774 6543222 234566777777777776632
Q ss_pred -CcCcCCCCCccEEEccCCCccc
Q psy16571 75 -SESMLAWPELRTIDIAENPIEC 96 (150)
Q Consensus 75 -p~~~~~~~~L~~L~l~~N~~~c 96 (150)
...+...++|+.|++++|.+.-
T Consensus 203 L~~~L~~~~~L~~L~Ls~N~i~~ 225 (372)
T 3un9_A 203 LAAQLDRNRQLQELNVAYNGAGD 225 (372)
T ss_dssp HHHHGGGCSCCCEEECCSSCCCH
T ss_pred HHHHHhcCCCcCeEECCCCCCCH
Confidence 2233345677777777776643
No 149
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.06 E-value=9.6e-06 Score=59.55 Aligned_cols=87 Identities=21% Similarity=0.315 Sum_probs=65.6
Q ss_pred CccccCccccceeccCCCcCcccccCcccCCCCCCCEEeCCCCCCCCccchhhcCCCCCCCeEecCCCCccccCcCcCCC
Q psy16571 2 EKEVKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESMLAW 81 (150)
Q Consensus 2 p~~f~~l~~L~~L~l~~n~~l~~i~~~~~~~l~~L~~l~l~~n~~l~~~~~~~~~~l~~L~~l~l~~n~l~~lp~~~~~~ 81 (150)
..+|.++.+|+.+.+.. .++.|...+|.++.+|+.+.+..+ ++.+...+|.++.+|+.+.+.++... + ..++.+
T Consensus 304 ~~aF~~c~~L~~i~lp~--~v~~I~~~aF~~C~~L~~i~ip~s--v~~I~~~aF~~C~~L~~i~~~~~~~~-~-~~~~~~ 377 (394)
T 4gt6_A 304 ESVFAGCISLKSIDIPE--GITQILDDAFAGCEQLERIAIPSS--VTKIPESAFSNCTALNNIEYSGSRSQ-W-NAISTD 377 (394)
T ss_dssp TTTTTTCTTCCEEECCT--TCCEECTTTTTTCTTCCEEEECTT--CCBCCGGGGTTCTTCCEEEESSCHHH-H-HTCBCC
T ss_pred ceeecCCCCcCEEEeCC--cccEehHhHhhCCCCCCEEEECcc--cCEEhHhHhhCCCCCCEEEECCceee-h-hhhhcc
Confidence 46799999999999986 499999999999999999999755 89999999999999999999987543 2 345567
Q ss_pred CCccEEEccCCCc
Q psy16571 82 PELRTIDIAENPI 94 (150)
Q Consensus 82 ~~L~~L~l~~N~~ 94 (150)
..|+.+.+..|..
T Consensus 378 ~~L~~i~i~~~~~ 390 (394)
T 4gt6_A 378 SGLQNLPVAPGSI 390 (394)
T ss_dssp CCC----------
T ss_pred CCCCEEEeCCCCE
Confidence 7888888776643
No 150
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.02 E-value=1.2e-05 Score=59.12 Aligned_cols=81 Identities=16% Similarity=0.263 Sum_probs=67.7
Q ss_pred CccccCccccceeccCCCcCcccccCcccCCCCCCCEEeCCCCCCCCccchhhcCCCCCCCeEecCCCCccccCcCcCCC
Q psy16571 2 EKEVKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESMLAW 81 (150)
Q Consensus 2 p~~f~~l~~L~~L~l~~n~~l~~i~~~~~~~l~~L~~l~l~~n~~l~~~~~~~~~~l~~L~~l~l~~n~l~~lp~~~~~~ 81 (150)
..+|.++.+|+.+++.. .++.+...+|.++.+|+.+.+..+ +..+...+|.++.+|+.+.+..+ +..+...+.++
T Consensus 313 ~~aF~~c~~L~~i~lp~--~v~~I~~~aF~~c~~L~~i~lp~~--l~~I~~~aF~~C~~L~~i~lp~~-~~~~~~~F~~c 387 (394)
T 4fs7_A 313 EEAFESCTSLVSIDLPY--LVEEIGKRSFRGCTSLSNINFPLS--LRKIGANAFQGCINLKKVELPKR-LEQYRYDFEDT 387 (394)
T ss_dssp TTTTTTCTTCCEECCCT--TCCEECTTTTTTCTTCCEECCCTT--CCEECTTTBTTCTTCCEEEEEGG-GGGGGGGBCTT
T ss_pred hhhhcCCCCCCEEEeCC--cccEEhHHhccCCCCCCEEEECcc--ccEehHHHhhCCCCCCEEEECCC-CEEhhheecCC
Confidence 46799999999999985 599999999999999999999866 88999999999999999999754 55555556667
Q ss_pred CCccEE
Q psy16571 82 PELRTI 87 (150)
Q Consensus 82 ~~L~~L 87 (150)
.+|+.+
T Consensus 388 ~~L~~I 393 (394)
T 4fs7_A 388 TKFKWI 393 (394)
T ss_dssp CEEEEE
T ss_pred CCCcEE
Confidence 777654
No 151
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.98 E-value=3.5e-05 Score=56.12 Aligned_cols=86 Identities=14% Similarity=0.186 Sum_probs=61.7
Q ss_pred ccccCccccceeccCCCcCcccccCcccCCCCCCCEEeCCCCCCCCccchhhcCCCCCCCeEecCCCCccccCcCcCC-C
Q psy16571 3 KEVKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESMLA-W 81 (150)
Q Consensus 3 ~~f~~l~~L~~L~l~~n~~l~~i~~~~~~~l~~L~~l~l~~n~~l~~~~~~~~~~l~~L~~l~l~~n~l~~lp~~~~~-~ 81 (150)
.+|.+...|+.+.+.. .+..++..+|.++.+|+.+.+.++. ++.+...+|.++.+|+.+.|..+ ++.+....|. +
T Consensus 257 ~aF~~~~~l~~i~l~~--~i~~i~~~aF~~c~~L~~i~l~~~~-i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C 332 (379)
T 4h09_A 257 FLLQNCTALKTLNFYA--KVKTVPYLLCSGCSNLTKVVMDNSA-IETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNC 332 (379)
T ss_dssp TTTTTCTTCCEEEECC--CCSEECTTTTTTCTTCCEEEECCTT-CCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTC
T ss_pred cccceeehhccccccc--cceeccccccccccccccccccccc-cceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCC
Confidence 4567777777777764 4777777778888888888887774 77787778888888888887644 6677665554 6
Q ss_pred CCccEEEccCC
Q psy16571 82 PELRTIDIAEN 92 (150)
Q Consensus 82 ~~L~~L~l~~N 92 (150)
.+|+.+.+..+
T Consensus 333 ~~L~~i~ip~~ 343 (379)
T 4h09_A 333 KALSTISYPKS 343 (379)
T ss_dssp TTCCCCCCCTT
T ss_pred CCCCEEEECCc
Confidence 67777766543
No 152
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.88 E-value=3.4e-05 Score=48.16 Aligned_cols=55 Identities=22% Similarity=0.279 Sum_probs=45.1
Q ss_pred ceeccCCCcCcc--cccCcccCCCCCCCEEeCCCCCCCCccchhhcCCCCCCCeEecCCCCc
Q psy16571 12 KRLEITGASNLT--RVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAF 71 (150)
Q Consensus 12 ~~L~l~~n~~l~--~i~~~~~~~l~~L~~l~l~~n~~l~~~~~~~~~~l~~L~~l~l~~n~l 71 (150)
..++.+++ .++ .+|... ..+|+.|+|++|. |+.++...|..+++|+.|+|++|.+
T Consensus 11 ~~v~Cs~~-~L~~~~vP~~l---p~~l~~L~Ls~N~-l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 11 TLVDCGRR-GLTWASLPTAF---PVDTTELVLTGNN-LTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp TEEECCSS-CCCTTTSCSCC---CTTCSEEECTTSC-CSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred CEEEeCCC-CCccccCCCCC---CcCCCEEECCCCc-CCccChhhhhhccccCEEEecCCCe
Confidence 46788888 888 777542 2368999999996 9999999899999999999999976
No 153
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.83 E-value=2.7e-06 Score=56.30 Aligned_cols=92 Identities=14% Similarity=0.155 Sum_probs=57.5
Q ss_pred ccCccccceeccCCCcCccccc----CcccCCCCCCCEEeCCCCCCCCccch----hhcCCCCCCCeEecCCCCccc---
Q psy16571 5 VKGLSYLKRLEITGASNLTRVR----KGAFADNLNLETLTLNKNPKLKIIEE----DALVGLPNLYHLNLKENAFTS--- 73 (150)
Q Consensus 5 f~~l~~L~~L~l~~n~~l~~i~----~~~~~~l~~L~~l~l~~n~~l~~~~~----~~~~~l~~L~~l~l~~n~l~~--- 73 (150)
+...+.|++|++++|+.++... ...+...++|+.|++++|. +..... ..+...+.|+.|+|++|.|..
T Consensus 32 l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~-i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~ 110 (185)
T 1io0_A 32 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTR-SNDPVAFALAEMLKVNNTLKSLNVESNFISGSGI 110 (185)
T ss_dssp HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSC-CCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHH
T ss_pred HhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCC-CChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHH
Confidence 3456678888888763443311 1234556778888888885 764221 223345678888888888764
Q ss_pred --cCcCcCCCCCccEEEc--cCCCcccc
Q psy16571 74 --FSESMLAWPELRTIDI--AENPIECG 97 (150)
Q Consensus 74 --lp~~~~~~~~L~~L~l--~~N~~~c~ 97 (150)
+...+...+.|+.|++ ++|.+...
T Consensus 111 ~~l~~~L~~n~~L~~L~L~~~~N~i~~~ 138 (185)
T 1io0_A 111 LALVEALQSNTSLIELRIDNQSQPLGNN 138 (185)
T ss_dssp HHHHHGGGGCSSCCEEECCCCSSCCCHH
T ss_pred HHHHHHHHhCCCceEEEecCCCCCCCHH
Confidence 3334445667888888 77777653
No 154
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.83 E-value=8.3e-06 Score=53.61 Aligned_cols=84 Identities=11% Similarity=0.124 Sum_probs=62.4
Q ss_pred cccceeccCCCcCcccccCcccCCCCCCCEEeCCCCCCCCccchhhcCCC----CCCCeEecCCC-Cccc--cCcCcCCC
Q psy16571 9 SYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGL----PNLYHLNLKEN-AFTS--FSESMLAW 81 (150)
Q Consensus 9 ~~L~~L~l~~n~~l~~i~~~~~~~l~~L~~l~l~~n~~l~~~~~~~~~~l----~~L~~l~l~~n-~l~~--lp~~~~~~ 81 (150)
-.|+.|+++++ .++...-..+.++++|+.|+++++..++.-.-..+..+ ++|+.|+|+++ .++. + ..+..+
T Consensus 61 ~~L~~LDLs~~-~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl-~~L~~~ 138 (176)
T 3e4g_A 61 YKIQAIDATDS-CIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGI-IALHHF 138 (176)
T ss_dssp CCEEEEEEESC-CCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHH-HHGGGC
T ss_pred ceEeEEeCcCC-CccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHH-HHHhcC
Confidence 46899999999 78877666788999999999999864655433334443 37999999987 4763 3 234468
Q ss_pred CCccEEEccCCCc
Q psy16571 82 PELRTIDIAENPI 94 (150)
Q Consensus 82 ~~L~~L~l~~N~~ 94 (150)
++|+.|++++.+-
T Consensus 139 ~~L~~L~L~~c~~ 151 (176)
T 3e4g_A 139 RNLKYLFLSDLPG 151 (176)
T ss_dssp TTCCEEEEESCTT
T ss_pred CCCCEEECCCCCC
Confidence 9999999987653
No 155
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=97.65 E-value=5.2e-06 Score=63.67 Aligned_cols=62 Identities=18% Similarity=0.193 Sum_probs=29.6
Q ss_pred CCCCCEEeCCCCCCCCccc-hhhcCCCCCCCeEecCCCCccc--cCcCcCCCCCccEEEccCCCcc
Q psy16571 33 NLNLETLTLNKNPKLKIIE-EDALVGLPNLYHLNLKENAFTS--FSESMLAWPELRTIDIAENPIE 95 (150)
Q Consensus 33 l~~L~~l~l~~n~~l~~~~-~~~~~~l~~L~~l~l~~n~l~~--lp~~~~~~~~L~~L~l~~N~~~ 95 (150)
+++|+.|++++|. ++... +..+..+++|+.|++++|.++. ++..+..+++|+.|++++|.++
T Consensus 462 ~~~L~~L~L~~n~-l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it 526 (592)
T 3ogk_B 462 SPNVRWMLLGYVG-ESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRAS 526 (592)
T ss_dssp CTTCCEEEECSCC-SSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCC
T ss_pred CccceEeeccCCC-CCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCC
Confidence 4555555555553 44321 1223445555566665555442 2222223455556666555543
No 156
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.62 E-value=2.6e-05 Score=51.53 Aligned_cols=91 Identities=15% Similarity=0.155 Sum_probs=62.9
Q ss_pred ccCccccceeccCCCcCcccccC----cccCCCCCCCEEeCCCCCCCCccc----hhhcCCCCCCCeEec--CCCCccc-
Q psy16571 5 VKGLSYLKRLEITGASNLTRVRK----GAFADNLNLETLTLNKNPKLKIIE----EDALVGLPNLYHLNL--KENAFTS- 73 (150)
Q Consensus 5 f~~l~~L~~L~l~~n~~l~~i~~----~~~~~l~~L~~l~l~~n~~l~~~~----~~~~~~l~~L~~l~l--~~n~l~~- 73 (150)
+...+.|++|++++| .++.... ..+...+.|+.|++++|. ++... ..++...+.|+.|+| ++|.+..
T Consensus 61 L~~~~~L~~L~Ls~n-~i~~~g~~~l~~~L~~n~~L~~L~L~~N~-i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~ 138 (185)
T 1io0_A 61 LKTNTYVKKFSIVGT-RSNDPVAFALAEMLKVNNTLKSLNVESNF-ISGSGILALVEALQSNTSLIELRIDNQSQPLGNN 138 (185)
T ss_dssp HTTCCSCCEEECTTS-CCCHHHHHHHHHHHHHCSSCCEEECCSSC-CCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHH
T ss_pred HHhCCCcCEEECcCC-CCChHHHHHHHHHHHhCCCcCEEECcCCc-CCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHH
Confidence 345578899999998 8765321 234445789999999996 87632 234556678999999 7888874
Q ss_pred ----cCcCcCCCCCccEEEccCCCcccc
Q psy16571 74 ----FSESMLAWPELRTIDIAENPIECG 97 (150)
Q Consensus 74 ----lp~~~~~~~~L~~L~l~~N~~~c~ 97 (150)
+...+...+.|+.|++++|.+.-.
T Consensus 139 g~~~l~~~L~~n~~L~~L~L~~n~i~~~ 166 (185)
T 1io0_A 139 VEMEIANMLEKNTTLLKFGYHFTQQGPR 166 (185)
T ss_dssp HHHHHHHHHHHCSSCCEEECCCSSHHHH
T ss_pred HHHHHHHHHHhCCCcCEEeccCCCCChH
Confidence 223333467899999998887643
No 157
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=97.45 E-value=1.8e-05 Score=60.71 Aligned_cols=80 Identities=13% Similarity=0.070 Sum_probs=33.8
Q ss_pred ccccceeccCCCcCcccccC----cccCCCCCCCEEeCCCCCCCCccch----hhcCCCCCCCeEecCCCCccccCcCcC
Q psy16571 8 LSYLKRLEITGASNLTRVRK----GAFADNLNLETLTLNKNPKLKIIEE----DALVGLPNLYHLNLKENAFTSFSESML 79 (150)
Q Consensus 8 l~~L~~L~l~~n~~l~~i~~----~~~~~l~~L~~l~l~~n~~l~~~~~----~~~~~l~~L~~l~l~~n~l~~lp~~~~ 79 (150)
+++|++|++++| .+..... ..+..+++|+.|++++|. ++.+.. ..+..+++|+.|++++|.+..++..+.
T Consensus 163 ~~~L~~L~L~~~-~~~~~~~~~l~~~~~~~~~L~~L~L~~n~-~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~~~~ 240 (592)
T 3ogk_B 163 CRKIKTLLMEES-SFSEKDGKWLHELAQHNTSLEVLNFYMTE-FAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFK 240 (592)
T ss_dssp CTTCSEEECTTC-EEECCCSHHHHHHHHHCCCCCEEECTTCC-CSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGHHHHH
T ss_pred CCCCCEEECccc-cccCcchhHHHHHHhcCCCccEEEeeccC-CCccCHHHHHHHHhhCCCCcEEeccCccHHHHHHHHh
Confidence 345555555555 4332211 122234455555555553 432221 112334555555555555444443333
Q ss_pred CCCCccEEEc
Q psy16571 80 AWPELRTIDI 89 (150)
Q Consensus 80 ~~~~L~~L~l 89 (150)
.+++|+.|.+
T Consensus 241 ~~~~L~~L~l 250 (592)
T 3ogk_B 241 AAANLEEFCG 250 (592)
T ss_dssp HCTTCCEEEE
T ss_pred hhhHHHhhcc
Confidence 3344444444
No 158
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=97.38 E-value=1.5e-05 Score=61.05 Aligned_cols=85 Identities=15% Similarity=0.169 Sum_probs=50.4
Q ss_pred CccccceeccCCCcCcccccCcccC-CCCCCCEEeCCCCCCCCccchhhc-CCCCCCCeEecCCCCcccc--CcCcCCCC
Q psy16571 7 GLSYLKRLEITGASNLTRVRKGAFA-DNLNLETLTLNKNPKLKIIEEDAL-VGLPNLYHLNLKENAFTSF--SESMLAWP 82 (150)
Q Consensus 7 ~l~~L~~L~l~~n~~l~~i~~~~~~-~l~~L~~l~l~~n~~l~~~~~~~~-~~l~~L~~l~l~~n~l~~l--p~~~~~~~ 82 (150)
++++|+.|+++++ ++......+. .+++|+.|++++|. ++......+ ..+++|+.|++++|.++.. ...+..++
T Consensus 430 ~~~~L~~L~L~~~--l~~~~~~~l~~~~~~L~~L~L~~~~-i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~ 506 (594)
T 2p1m_B 430 HCKDLRRLSLSGL--LTDKVFEYIGTYAKKMEMLSVAFAG-DSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLE 506 (594)
T ss_dssp HCTTCCEEECCSS--CCHHHHHHHHHHCTTCCEEEEESCC-SSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGG
T ss_pred hCCCccEEeecCc--ccHHHHHHHHHhchhccEeeccCCC-CcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCC
Confidence 3455666666442 3222211222 26677788887775 654433332 4578888888888887532 22333467
Q ss_pred CccEEEccCCCc
Q psy16571 83 ELRTIDIAENPI 94 (150)
Q Consensus 83 ~L~~L~l~~N~~ 94 (150)
+|+.|++++|++
T Consensus 507 ~L~~L~l~~~~~ 518 (594)
T 2p1m_B 507 TMRSLWMSSCSV 518 (594)
T ss_dssp GSSEEEEESSCC
T ss_pred CCCEEeeeCCCC
Confidence 888888888877
No 159
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=97.13 E-value=9.4e-05 Score=56.64 Aligned_cols=85 Identities=16% Similarity=0.155 Sum_probs=44.2
Q ss_pred ccccceeccCCCcCcccccCcccC-CCCCCCEEeCCCCCCCCcc-chhhcCCCCCCCeEecCCCCcccc-----CcCcCC
Q psy16571 8 LSYLKRLEITGASNLTRVRKGAFA-DNLNLETLTLNKNPKLKII-EEDALVGLPNLYHLNLKENAFTSF-----SESMLA 80 (150)
Q Consensus 8 l~~L~~L~l~~n~~l~~i~~~~~~-~l~~L~~l~l~~n~~l~~~-~~~~~~~l~~L~~l~l~~n~l~~l-----p~~~~~ 80 (150)
+++|++|++++| .++......+. .+++|+.|++++|..++.. .+..+..+++|+.|++++|.++.. +.....
T Consensus 104 ~~~L~~L~L~~~-~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~ 182 (594)
T 2p1m_B 104 YTWLEEIRLKRM-VVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDT 182 (594)
T ss_dssp CTTCCEEEEESC-BCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTT
T ss_pred CCCCCeEEeeCc-EEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhc
Confidence 456667777766 55544333332 4566777777666213321 112223466777777777665432 111223
Q ss_pred CCCccEEEccCCC
Q psy16571 81 WPELRTIDIAENP 93 (150)
Q Consensus 81 ~~~L~~L~l~~N~ 93 (150)
+++|+.|++++|.
T Consensus 183 ~~~L~~L~l~~~~ 195 (594)
T 2p1m_B 183 YTSLVSLNISCLA 195 (594)
T ss_dssp CCCCCEEECTTCC
T ss_pred CCcCcEEEecccC
Confidence 5566666666554
No 160
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.03 E-value=0.0002 Score=52.25 Aligned_cols=61 Identities=16% Similarity=0.182 Sum_probs=32.2
Q ss_pred CCCCCEEeCCCCCCCCccchhhc---CCCCCCCeEecCCCCccc-----cCcCcCCCCCccEEEccCCCc
Q psy16571 33 NLNLETLTLNKNPKLKIIEEDAL---VGLPNLYHLNLKENAFTS-----FSESMLAWPELRTIDIAENPI 94 (150)
Q Consensus 33 l~~L~~l~l~~n~~l~~~~~~~~---~~l~~L~~l~l~~n~l~~-----lp~~~~~~~~L~~L~l~~N~~ 94 (150)
+++|+.|++.+|. +.......+ ..+++|+.|+|+.|.+.. +...+..+++|+.|+++.|.+
T Consensus 251 ~p~Lr~L~L~~~~-i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i 319 (362)
T 2ra8_A 251 FPNLKWLGIVDAE-EQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYL 319 (362)
T ss_dssp CTTCCEEEEESCT-THHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBC
T ss_pred CCCcCEEeCCCCC-CchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcC
Confidence 5666666666663 542111111 235666777776666653 222223356677777766654
No 161
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=96.91 E-value=0.0002 Score=46.97 Aligned_cols=69 Identities=13% Similarity=0.126 Sum_probs=51.6
Q ss_pred cccCccccceeccCCCcCcccccCcccCCC----CCCCEEeCCCCCCCCccchhhcCCCCCCCeEecCCCC-cc
Q psy16571 4 EVKGLSYLKRLEITGASNLTRVRKGAFADN----LNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENA-FT 72 (150)
Q Consensus 4 ~f~~l~~L~~L~l~~n~~l~~i~~~~~~~l----~~L~~l~l~~n~~l~~~~~~~~~~l~~L~~l~l~~n~-l~ 72 (150)
.+.++++|+.|+++++..++.-.-..+..+ ++|+.|+++++..++.-.-..+..+++|+.|++++.. ++
T Consensus 80 ~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L~~L~L~~c~~It 153 (176)
T 3e4g_A 80 HMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNLKYLFLSDLPGVK 153 (176)
T ss_dssp GGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTCCEEEEESCTTCC
T ss_pred HhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCCCEEECCCCCCCC
Confidence 356789999999999955765443445544 3799999999865776555556778999999999873 44
No 162
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=95.88 E-value=0.0087 Score=43.60 Aligned_cols=55 Identities=29% Similarity=0.363 Sum_probs=23.7
Q ss_pred CccccceeccCCCcCcccccCcccCCCCCCCEEeCCCCCCCCccchhhc--CCCCCCCeEec
Q psy16571 7 GLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDAL--VGLPNLYHLNL 66 (150)
Q Consensus 7 ~l~~L~~L~l~~n~~l~~i~~~~~~~l~~L~~l~l~~n~~l~~~~~~~~--~~l~~L~~l~l 66 (150)
.+++|+.|.++++ .-..+++ +. +++|+.|++..+. +..-....+ ..+++|+.|+|
T Consensus 170 ~~P~L~~L~L~g~-~~l~l~~--~~-~~~L~~L~L~~~~-l~~~~l~~l~~~~lp~L~~L~L 226 (362)
T 2ra8_A 170 AMPLLNNLKIKGT-NNLSIGK--KP-RPNLKSLEIISGG-LPDSVVEDILGSDLPNLEKLVL 226 (362)
T ss_dssp TCTTCCEEEEECC-BTCBCCS--CB-CTTCSEEEEECSB-CCHHHHHHHHHSBCTTCCEEEE
T ss_pred cCCCCcEEEEeCC-CCceecc--cc-CCCCcEEEEecCC-CChHHHHHHHHccCCCCcEEEE
Confidence 3455666666555 2112221 21 4455555555442 332111111 13555666555
No 163
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=95.72 E-value=0.019 Score=33.90 Aligned_cols=50 Identities=22% Similarity=0.359 Sum_probs=41.7
Q ss_pred CCcCcccccCcccCCCCCCCEEeCCCCCCCCccchhhcCCCCCCCeEecCCCC
Q psy16571 18 GASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENA 70 (150)
Q Consensus 18 ~n~~l~~i~~~~~~~l~~L~~l~l~~n~~l~~~~~~~~~~l~~L~~l~l~~n~ 70 (150)
+. .++.|...+|.++.+|+.+.+..+ ++.|...+|.++.+|+.+.+.+..
T Consensus 5 g~-~vt~I~~~aF~~c~~L~~i~iP~~--v~~Ig~~aF~~C~~L~~i~~~~~~ 54 (100)
T 2lz0_A 5 GE-PVVGMDKSLFAGNTVIREITVQPN--IGLLYDGMFSGCTALEKLILTGED 54 (100)
T ss_dssp CC-CCCSSCSCTTTTCTTCCCEEECTT--SSCCCTTSSTTCTTCCCEEECCSC
T ss_pred CC-ccCEecHHHhcCCCCCcEEEcCCc--hheEcHHHHhccCCccEEEEcCCC
Confidence 44 678888889999999999999865 888888899999999988887653
No 164
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=95.26 E-value=0.01 Score=39.61 Aligned_cols=84 Identities=18% Similarity=0.232 Sum_probs=54.2
Q ss_pred ccccceeccCCCcCcccc----cCcccCCCCCCCEEeCCCCCCCCccch----hhcCCCCCCCeEecCCCCccc-----c
Q psy16571 8 LSYLKRLEITGASNLTRV----RKGAFADNLNLETLTLNKNPKLKIIEE----DALVGLPNLYHLNLKENAFTS-----F 74 (150)
Q Consensus 8 l~~L~~L~l~~n~~l~~i----~~~~~~~l~~L~~l~l~~n~~l~~~~~----~~~~~l~~L~~l~l~~n~l~~-----l 74 (150)
-+.|++|++++|+.+..- -..++..-..|+.|+|++|. ++.... .++..-..|+.|+|++|.|.. +
T Consensus 40 n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~-igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~al 118 (197)
T 1pgv_A 40 DTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTA-ISDSEARGLIELIETSPSLRVLNVESNFLTPELLARL 118 (197)
T ss_dssp CSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSC-CBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHH
T ss_pred CCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCC-CChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHH
Confidence 356888888874255432 12345556789999999885 764332 223345788999999998863 2
Q ss_pred CcCcCCCCCccEEEccCC
Q psy16571 75 SESMLAWPELRTIDIAEN 92 (150)
Q Consensus 75 p~~~~~~~~L~~L~l~~N 92 (150)
-..+.....|+.|+|++|
T Consensus 119 a~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 119 LRSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp HHHTTTTCCCSEEECCCC
T ss_pred HHHHhhCCceeEEECCCC
Confidence 223344567889998764
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=94.18 E-value=0.11 Score=30.59 Aligned_cols=42 Identities=17% Similarity=0.298 Sum_probs=37.3
Q ss_pred CccccCccccceeccCCCcCcccccCcccCCCCCCCEEeCCCCC
Q psy16571 2 EKEVKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNP 45 (150)
Q Consensus 2 p~~f~~l~~L~~L~l~~n~~l~~i~~~~~~~l~~L~~l~l~~n~ 45 (150)
..+|.+..+|+.+.|..+ ++.|...+|.++.+|+.+.+....
T Consensus 13 ~~aF~~c~~L~~i~iP~~--v~~Ig~~aF~~C~~L~~i~~~~~~ 54 (100)
T 2lz0_A 13 KSLFAGNTVIREITVQPN--IGLLYDGMFSGCTALEKLILTGED 54 (100)
T ss_dssp SCTTTTCTTCCCEEECTT--SSCCCTTSSTTCTTCCCEEECCSC
T ss_pred HHHhcCCCCCcEEEcCCc--hheEcHHHHhccCCccEEEEcCCC
Confidence 467999999999999965 999999999999999999997653
No 166
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=93.67 E-value=0.031 Score=37.19 Aligned_cols=88 Identities=8% Similarity=0.101 Sum_probs=59.7
Q ss_pred cCccccceeccCCCcCcccccCcc----cCCCCCCCEEeCCCCCCCCccch----hhcCCCCCCCeEecCCCC---ccc-
Q psy16571 6 KGLSYLKRLEITGASNLTRVRKGA----FADNLNLETLTLNKNPKLKIIEE----DALVGLPNLYHLNLKENA---FTS- 73 (150)
Q Consensus 6 ~~l~~L~~L~l~~n~~l~~i~~~~----~~~l~~L~~l~l~~n~~l~~~~~----~~~~~l~~L~~l~l~~n~---l~~- 73 (150)
..-..|+.|+|++| .++.....+ +..-..|+.|+|++|. |+.... .++..-..|+.|+|++|. +..
T Consensus 67 ~~N~~L~~L~L~~n-~igd~ga~alA~aL~~N~tL~~L~L~~N~-Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~ 144 (197)
T 1pgv_A 67 CNSKHIEKFSLANT-AISDSEARGLIELIETSPSLRVLNVESNF-LTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQ 144 (197)
T ss_dssp TTCSCCCEEECTTS-CCBHHHHTTHHHHHHHCSSCCEEECCSSB-CCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHH
T ss_pred hhCCCcCEEEccCC-CCChHHHHHHHHHHhcCCccCeEecCCCc-CCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHH
Confidence 33467999999999 887544323 3345789999999996 875332 345566789999998763 331
Q ss_pred ----cCcCcCCCCCccEEEccCCCcc
Q psy16571 74 ----FSESMLAWPELRTIDIAENPIE 95 (150)
Q Consensus 74 ----lp~~~~~~~~L~~L~l~~N~~~ 95 (150)
+-..+...+.|..|+++.|...
T Consensus 145 g~~~ia~aL~~N~tL~~L~l~~~~~g 170 (197)
T 1pgv_A 145 VEMDMMMAIEENESLLRVGISFASME 170 (197)
T ss_dssp HHHHHHHHHHHCSSCCEEECCCCCHH
T ss_pred HHHHHHHHHHhCCCcCeEeccCCCcc
Confidence 2222333678999999876544
Done!