RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy16571
(150 letters)
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4
complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB:
3zyo_A* 3zyn_A* 2dl9_A
Length = 452
Score = 102 bits (257), Expect = 8e-27
Identities = 35/136 (25%), Positives = 64/136 (47%), Gaps = 7/136 (5%)
Query: 6 KGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLN 65
L L+ LE++G ++ +R G+F +L+ L + + ++ +IE +A GL +L LN
Sbjct: 215 TPLVGLEELEMSG-NHFPEIRPGSFHGLSSLKKLWVMNS-QVSLIERNAFDGLASLVELN 272
Query: 66 LKENAFTSFSESMLA-WPELRTIDIAENPIECGCNILWLREMLVRR----NTSAVFCNSP 120
L N +S + L + + NP C C+ILWL L +T C++P
Sbjct: 273 LAHNNLSSLPHDLFTPLRYLVELHLHHNPWNCDCDILWLAWWLREYIPTNSTCCGRCHAP 332
Query: 121 APLKYKSLISLSAEDL 136
++ + L+ +
Sbjct: 333 MHMRGRYLVEVDQASF 348
Score = 55.9 bits (135), Expect = 4e-10
Identities = 24/91 (26%), Positives = 39/91 (42%), Gaps = 4/91 (4%)
Query: 6 KGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLN 65
+ LS L+ L + + + + AF +L L L + KL+ I E A GL NL +LN
Sbjct: 144 EYLSKLRELWL-RNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLN 202
Query: 66 LKENAFTSFSE-SMLAWPELRTIDIAENPIE 95
L + L L ++++ N
Sbjct: 203 LGMCNIKDMPNLTPL--VGLEELEMSGNHFP 231
Score = 55.1 bits (133), Expect = 7e-10
Identities = 24/88 (27%), Positives = 39/88 (44%), Gaps = 3/88 (3%)
Query: 6 KGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLN 65
+ L +L+ L++ +++ ++ GAF +L TL L N L +I A L L L
Sbjct: 96 RHLHHLEVLQLGR-NSIRQIEVGAFNGLASLNTLELFDN-WLTVIPSGAFEYLSKLRELW 153
Query: 66 LKENAFTSFSESMLAW-PELRTIDIAEN 92
L+ N S P L +D+ E
Sbjct: 154 LRNNPIESIPSYAFNRVPSLMRLDLGEL 181
Score = 38.6 bits (90), Expect = 3e-04
Identities = 17/75 (22%), Positives = 32/75 (42%), Gaps = 5/75 (6%)
Query: 21 NLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESMLA 80
L+ V +G + N L L +N +++I+ D L +L L L N+
Sbjct: 65 GLSEVPQGIPS---NTRYLNLMEN-NIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFN 120
Query: 81 W-PELRTIDIAENPI 94
L T+++ +N +
Sbjct: 121 GLASLNTLELFDNWL 135
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG
containing, ligand binding protein,membr protein; HET:
NAG MAN; 2.70A {Homo sapiens}
Length = 477
Score = 100 bits (252), Expect = 5e-26
Identities = 33/136 (24%), Positives = 59/136 (43%), Gaps = 5/136 (3%)
Query: 6 KGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLN 65
+ L YL+ L ++ + ++ + + L L+ + L +L ++E A GL L LN
Sbjct: 245 RHLVYLRFLNLSY-NPISTIEGSMLHELLRLQEIQLVGG-QLAVVEPYAFRGLNYLRVLN 302
Query: 66 LKENAFTSFSESMLA-WPELRTIDIAENPIECGCNILWLREMLVR--RNTSAVFCNSPAP 122
+ N T+ ES+ L T+ + NP+ C C +LW+ R N C +P
Sbjct: 303 VSGNQLTTLEESVFHSVGNLETLILDSNPLACDCRLLWVFRRRWRLNFNRQQPTCATPEF 362
Query: 123 LKYKSLISLSAEDLGS 138
++ K L +
Sbjct: 363 VQGKEFKDFPDVLLPN 378
Score = 62.0 bits (151), Expect = 3e-12
Identities = 25/90 (27%), Positives = 40/90 (44%), Gaps = 3/90 (3%)
Query: 6 KGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLN 65
+ L LK LE+ ++L + AF+ +LE LTL K L I +AL L L L
Sbjct: 125 QDLYNLKSLEVGD-NDLVYISHRAFSGLNSLEQLTLEKC-NLTSIPTEALSHLHGLIVLR 182
Query: 66 LKENAFTSFSESMLAW-PELRTIDIAENPI 94
L+ + + L+ ++I+ P
Sbjct: 183 LRHLNINAIRDYSFKRLYRLKVLEISHWPY 212
Score = 57.4 bits (139), Expect = 9e-11
Identities = 19/91 (20%), Positives = 36/91 (39%), Gaps = 3/91 (3%)
Query: 6 KGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLN 65
L L+ L + + L + G F NL L +++N K+ I+ + L NL L
Sbjct: 77 NNLFNLRTLGLRS-NRLKLIPLGVFTGLSNLTKLDISEN-KIVILLDYMFQDLYNLKSLE 134
Query: 66 LKENAFTSFSESMLA-WPELRTIDIAENPIE 95
+ +N S + L + + + +
Sbjct: 135 VGDNDLVYISHRAFSGLNSLEQLTLEKCNLT 165
Score = 57.4 bits (139), Expect = 1e-10
Identities = 25/92 (27%), Positives = 40/92 (43%), Gaps = 3/92 (3%)
Query: 6 KGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLN 65
GLS L +L+I+ + + + F D NL++L + N L I A GL +L L
Sbjct: 101 TGLSNLTKLDISE-NKIVILLDYMFQDLYNLKSLEVGDN-DLVYISHRAFSGLNSLEQLT 158
Query: 66 LKENAFTSFSESMLAW-PELRTIDIAENPIEC 96
L++ TS L+ L + + I
Sbjct: 159 LEKCNLTSIPTEALSHLHGLIVLRLRHLNINA 190
Score = 54.3 bits (131), Expect = 1e-09
Identities = 23/89 (25%), Positives = 39/89 (43%), Gaps = 3/89 (3%)
Query: 9 SYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKE 68
+ + L++ + + + + FA +LE L LN+N + +E A L NL L L+
Sbjct: 32 TETRLLDLGK-NRIKTLNQDEFASFPHLEELELNEN-IVSAVEPGAFNNLFNLRTLGLRS 89
Query: 69 NAFTSFSESMLAW-PELRTIDIAENPIEC 96
N + L +DI+EN I
Sbjct: 90 NRLKLIPLGVFTGLSNLTKLDISENKIVI 118
Score = 53.6 bits (129), Expect = 2e-09
Identities = 22/90 (24%), Positives = 39/90 (43%), Gaps = 3/90 (3%)
Query: 7 GLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNL 66
L L L + N+ +R +F L+ L ++ P L + + L GL NL L++
Sbjct: 174 HLHGLIVLRLRH-LNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGL-NLTSLSI 231
Query: 67 KENAFTSFSESMLAW-PELRTIDIAENPIE 95
T+ + LR ++++ NPI
Sbjct: 232 THCNLTAVPYLAVRHLVYLRFLNLSYNPIS 261
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse;
HET: NAG BMA MAN; 3.25A {Homo sapiens}
Length = 440
Score = 99.1 bits (247), Expect = 2e-25
Identities = 35/136 (25%), Positives = 63/136 (46%), Gaps = 7/136 (5%)
Query: 6 KGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLN 65
L L L+++G ++L+ +R G+F ++L+ L + ++ ++++IE +A L +L +N
Sbjct: 204 TPLIKLDELDLSG-NHLSAIRPGSFQGLMHLQKLWMIQS-QIQVIERNAFDNLQSLVEIN 261
Query: 66 LKENAFTSFSESMLA-WPELRTIDIAENPIECGCNILWLREMLVRR----NTSAVFCNSP 120
L N T + L I + NP C C+ILWL + CN+P
Sbjct: 262 LAHNNLTLLPHDLFTPLHHLERIHLHHNPWNCNCDILWLSWWIKDMAPSNTACCARCNTP 321
Query: 121 APLKYKSLISLSAEDL 136
LK + + L
Sbjct: 322 PNLKGRYIGELDQNYF 337
Score = 55.5 bits (134), Expect = 5e-10
Identities = 28/89 (31%), Positives = 41/89 (46%), Gaps = 3/89 (3%)
Query: 6 KGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLN 65
K L +L+ L+++ +++ + GAF NL TL L N +L I A V L L L
Sbjct: 85 KHLRHLEILQLSR-NHIRTIEIGAFNGLANLNTLELFDN-RLTTIPNGAFVYLSKLKELW 142
Query: 66 LKENAFTSFSESMLAW-PELRTIDIAENP 93
L+ N S P LR +D+ E
Sbjct: 143 LRNNPIESIPSYAFNRIPSLRRLDLGELK 171
Score = 54.0 bits (130), Expect = 2e-09
Identities = 25/91 (27%), Positives = 39/91 (42%), Gaps = 4/91 (4%)
Query: 6 KGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLN 65
LS LK L + + + + AF +L L L + +L I E A GL NL +LN
Sbjct: 133 VYLSKLKELWLRN-NPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLN 191
Query: 66 LKENAFTSFSE-SMLAWPELRTIDIAENPIE 95
L + L +L +D++ N +
Sbjct: 192 LAMCNLREIPNLTPL--IKLDELDLSGNHLS 220
Score = 53.6 bits (129), Expect = 2e-09
Identities = 22/76 (28%), Positives = 38/76 (50%), Gaps = 2/76 (2%)
Query: 21 NLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESMLA 80
+ ++ +F +LE L L++N ++ IE A GL NL L L +N T+
Sbjct: 75 QIQIIKVNSFKHLRHLEILQLSRN-HIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFV 133
Query: 81 W-PELRTIDIAENPIE 95
+ +L+ + + NPIE
Sbjct: 134 YLSKLKELWLRNNPIE 149
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition,
OMGP, MAG, NOGO- signal transduction, neuronal
regeneration, ligand binding; HET: NDG MAN NAG BMA;
1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Length = 285
Score = 95.4 bits (238), Expect = 6e-25
Identities = 37/133 (27%), Positives = 60/133 (45%), Gaps = 5/133 (3%)
Query: 7 GLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNL 66
L L L + G + ++ V + AF +L+ L L++N ++ + A L L L L
Sbjct: 151 DLGNLTHLFLHG-NRISSVPERAFRGLHSLDRLLLHQN-RVAHVHPHAFRDLGRLMTLYL 208
Query: 67 KENAFTSFSESMLA-WPELRTIDIAENPIECGCNILWLREMLV--RRNTSAVFCNSPAPL 123
N ++ LA L+ + + +NP C C L L R ++S V C+ P L
Sbjct: 209 FANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLWAWLQKFRGSSSEVPCSLPQRL 268
Query: 124 KYKSLISLSAEDL 136
+ L L+A DL
Sbjct: 269 AGRDLKRLAANDL 281
Score = 58.9 bits (143), Expect = 2e-11
Identities = 19/90 (21%), Positives = 36/90 (40%), Gaps = 2/90 (2%)
Query: 6 KGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLN 65
+ L L + + L R+ AF LE L L+ N +L+ ++ GL L+ L+
Sbjct: 53 RACRNLTILWLHS-NVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLH 111
Query: 66 LKENAFTSFSESMLAW-PELRTIDIAENPI 94
L + L+ + + +N +
Sbjct: 112 LDRCGLQELGPGLFRGLAALQYLYLQDNAL 141
Score = 37.3 bits (87), Expect = 7e-04
Identities = 14/74 (18%), Positives = 26/74 (35%), Gaps = 5/74 (6%)
Query: 21 NLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESMLA 80
L V G A + + L+ N ++ + + NL L L N +
Sbjct: 22 GLQAVPVGIPAA---SQRIFLHGN-RISHVPAASFRACRNLTILWLHSNVLARIDAAAFT 77
Query: 81 W-PELRTIDIAENP 93
L +D+++N
Sbjct: 78 GLALLEQLDLSDNA 91
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA,
receptor-ligand complex transferase; HET: NAG NDG MAN
BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Length = 347
Score = 88.6 bits (219), Expect = 6e-22
Identities = 28/113 (24%), Positives = 42/113 (37%), Gaps = 1/113 (0%)
Query: 6 KGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLN 65
G L L I +L + L LT+ K+ L+ + DA P L LN
Sbjct: 28 PGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKS-GLRFVAPDAFHFTPRLSRLN 86
Query: 66 LKENAFTSFSESMLAWPELRTIDIAENPIECGCNILWLREMLVRRNTSAVFCN 118
L NA S S + L+ + ++ NP+ C C + WL+
Sbjct: 87 LSFNALESLSWKTVQGLSLQELVLSGNPLHCSCALRWLQRWEEEGLGGVPEQK 139
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like
receptor, MD-2, LPS, leucine-rich repeat, glycoprotein,
immune response; HET: NAG BMA FUL; 1.90A {Eptatretus
burgeri}
Length = 306
Score = 84.7 bits (210), Expect = 9e-21
Identities = 22/134 (16%), Positives = 51/134 (38%), Gaps = 9/134 (6%)
Query: 6 KGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLN 65
L L L+++ L ++ AF +L+ L ++ N ++ L +L L+
Sbjct: 172 TELRNLTFLDLSQ-CQLEQLSPTAFNSLSSLQVLNMSHN-NFFSLDTFPYKCLNSLQVLD 229
Query: 66 LKENAFTSFSESMLA--WPELRTIDIAENPIECGCNILWLREMLVRR-----NTSAVFCN 118
N + + L L +++ +N C C + + + + C
Sbjct: 230 YSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECA 289
Query: 119 SPAPLKYKSLISLS 132
+P+ + ++SL+
Sbjct: 290 TPSDKQGMPVLSLN 303
Score = 47.7 bits (114), Expect = 2e-07
Identities = 20/86 (23%), Positives = 36/86 (41%), Gaps = 2/86 (2%)
Query: 11 LKRLEITGASNLTRVRKGAFADNLNLETLTLNKNP-KLKIIEEDALVGLPNLYHLNLKEN 69
RLE+ + L + G F L L+L+ N K + G +L +L+L N
Sbjct: 30 ATRLELES-NKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFN 88
Query: 70 AFTSFSESMLAWPELRTIDIAENPIE 95
+ S + L +L +D + ++
Sbjct: 89 GVITMSSNFLGLEQLEHLDFQHSNLK 114
Score = 46.2 bits (110), Expect = 7e-07
Identities = 16/90 (17%), Positives = 33/90 (36%), Gaps = 3/90 (3%)
Query: 6 KGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLN 65
G + LK L+++ + + + F LE L + ++ E + L NL +L+
Sbjct: 75 FGTTSLKYLDLSF-NGVITMS-SNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLD 132
Query: 66 LKENAFTSFSESMLAW-PELRTIDIAENPI 94
+ + L + +A N
Sbjct: 133 ISHTHTRVAFNGIFNGLSSLEVLKMAGNSF 162
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor
complex, developmental protein, domain, roundabout,
chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Length = 220
Score = 81.6 bits (202), Expect = 4e-20
Identities = 39/134 (29%), Positives = 66/134 (49%), Gaps = 7/134 (5%)
Query: 7 GLSYLKRLEITGASNLTRVRKGAFADNL-NLETLTLNKNPKLKIIEEDALVGLPNLYHLN 65
GL L L + G + +T + K F + L +L+ L LN N K+ + DA L NL L+
Sbjct: 78 GLRSLNSLVLYG-NKITELPKSLF-EGLFSLQLLLLNAN-KINCLRVDAFQDLHNLNLLS 134
Query: 66 LKENAFTSFSESMLAW-PELRTIDIAENPIECGCNILWLREMLVRR--NTSAVFCNSPAP 122
L +N + ++ + ++T+ +A+NP C C++ WL + L TS C SP
Sbjct: 135 LYDNKLQTIAKGTFSPLRAIQTMHLAQNPFICDCHLKWLADYLHTNPIETSGARCTSPRR 194
Query: 123 LKYKSLISLSAEDL 136
L K + + ++
Sbjct: 195 LANKRIGQIKSKKF 208
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis,
glycoprotein, secreted, chemotaxis, LRR structural
protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Length = 220
Score = 76.2 bits (188), Expect = 5e-18
Identities = 35/134 (26%), Positives = 62/134 (46%), Gaps = 7/134 (5%)
Query: 7 GLSYLKRLEITGASN-LTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLN 65
G S + + +T N L V+ F +L+TL L N ++ + D+ +GL ++ L+
Sbjct: 79 GASGVNEILLTS--NRLENVQHKMFKGLESLKTLMLRSN-RITCVGNDSFIGLSSVRLLS 135
Query: 66 LKENAFTSFSESMLAW-PELRTIDIAENPIECGCNILWLREMLVRRN--TSAVFCNSPAP 122
L +N T+ + L T+++ NP C C + WL E L ++ T C P
Sbjct: 136 LYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCYLAWLGEWLRKKRIVTGNPRCQKPYF 195
Query: 123 LKYKSLISLSAEDL 136
LK + ++ +D
Sbjct: 196 LKEIPIQDVAIQDF 209
Score = 28.9 bits (65), Expect = 0.51
Identities = 14/62 (22%), Positives = 19/62 (30%), Gaps = 1/62 (1%)
Query: 35 NLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESMLAW-PELRTIDIAENP 93
L LN N + LP L +N N T E + I + N
Sbjct: 33 YTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNR 92
Query: 94 IE 95
+E
Sbjct: 93 LE 94
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid
recognition, receptor immunity, lipid binding,
glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO
MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Length = 606
Score = 77.8 bits (192), Expect = 8e-18
Identities = 20/133 (15%), Positives = 49/133 (36%), Gaps = 8/133 (6%)
Query: 6 KGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLN 65
+ L L+++ L ++ G F L+ L ++ N L ++ L +L L+
Sbjct: 470 ANTTNLTFLDLSK-CQLEQISWGVFDTLHRLQLLNMSHN-NLLFLDSSHYNQLYSLSTLD 527
Query: 66 LKENAFTSFSESMLAWPE-LRTIDIAENPIECGCNILWLREMLVRRNT-----SAVFCNS 119
N + + +P+ L ++ N + C C + + + + C +
Sbjct: 528 CSFNRIETSKGILQHFPKSLAFFNLTNNSVACICEHQKFLQWVKEQKQFLVNVEQMTCAT 587
Query: 120 PAPLKYKSLISLS 132
P + ++ +
Sbjct: 588 PVEMNTSLVLDFN 600
Score = 53.1 bits (128), Expect = 4e-09
Identities = 18/90 (20%), Positives = 36/90 (40%), Gaps = 3/90 (3%)
Query: 6 KGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLN 65
S L+ L+++ + + A+ +L L L N ++ + GL +L +L
Sbjct: 53 SNFSELQWLDLSR-CEIETIEDKAWHGLHHLSNLILTGN-PIQSFSPGSFSGLTSLENLV 110
Query: 66 LKENAFTSFSESMLAW-PELRTIDIAENPI 94
E S + L+ +++A N I
Sbjct: 111 AVETKLASLESFPIGQLITLKKLNVAHNFI 140
Score = 52.7 bits (127), Expect = 4e-09
Identities = 24/92 (26%), Positives = 39/92 (42%), Gaps = 4/92 (4%)
Query: 7 GLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNL 66
GL +L L +TG + + G+F+ +LE L + KL +E + L L LN+
Sbjct: 78 GLHHLSNLILTG-NPIQSFSPGSFSGLTSLENLVAVET-KLASLESFPIGQLITLKKLNV 135
Query: 67 KENAFTSFS--ESMLAWPELRTIDIAENPIEC 96
N S L +D++ N I+
Sbjct: 136 AHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQT 167
Score = 50.4 bits (121), Expect = 3e-08
Identities = 21/89 (23%), Positives = 43/89 (48%), Gaps = 3/89 (3%)
Query: 9 SYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKE 68
S K ++++ + L ++ +F++ L+ L L++ +++ IE+ A GL +L +L L
Sbjct: 32 SSTKNIDLSF-NPLKILKSYSFSNFSELQWLDLSRC-EIETIEDKAWHGLHHLSNLILTG 89
Query: 69 NAFTSFSESMLAW-PELRTIDIAENPIEC 96
N SFS + L + E +
Sbjct: 90 NPIQSFSPGSFSGLTSLENLVAVETKLAS 118
Score = 46.9 bits (112), Expect = 5e-07
Identities = 16/89 (17%), Positives = 34/89 (38%), Gaps = 3/89 (3%)
Query: 7 GLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNL 66
G + L+ L++ + N + F L+ L + ++ E A + L L +L++
Sbjct: 374 GTNSLRHLDL--SFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDI 431
Query: 67 KENAFTSFSESMLAW-PELRTIDIAENPI 94
+ + L T+ +A N
Sbjct: 432 SYTNTKIDFDGIFLGLTSLNTLKMAGNSF 460
Score = 44.3 bits (105), Expect = 4e-06
Identities = 19/96 (19%), Positives = 37/96 (38%), Gaps = 6/96 (6%)
Query: 6 KGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLN 65
GL+ L+ L + L + + L+ L + N L NL H++
Sbjct: 101 SGLTSLENLVAVE-TKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVD 159
Query: 66 LKENAFTSFSESMLAW-----PELRTIDIAENPIEC 96
L N + + + L + ++D++ NPI+
Sbjct: 160 LSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDF 195
Score = 43.1 bits (102), Expect = 9e-06
Identities = 18/94 (19%), Positives = 35/94 (37%), Gaps = 7/94 (7%)
Query: 6 KGLSYLKRLEITGASNLTRVRKGAFADNL-NLETLTLNKNPKLKIIEEDALVGLPNL--- 61
L LK+L + + + + A+ NL NL + L+ N ++ I + L L
Sbjct: 125 GQLITLKKLNVAH-NFIHSCKLPAYFSNLTNLVHVDLSYN-YIQTITVNDLQFLRENPQV 182
Query: 62 -YHLNLKENAFTSFSESMLAWPELRTIDIAENPI 94
L++ N + +L + + N
Sbjct: 183 NLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFN 216
Score = 36.5 bits (85), Expect = 0.002
Identities = 21/69 (30%), Positives = 30/69 (43%), Gaps = 6/69 (8%)
Query: 30 FADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSE---SMLAWPELRT 86
D L++LTL N K V LP+L +L+L NA + S L LR
Sbjct: 324 TLDLPFLKSLTLTMN---KGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRH 380
Query: 87 IDIAENPIE 95
+D++ N
Sbjct: 381 LDLSFNGAI 389
Score = 35.8 bits (83), Expect = 0.003
Identities = 10/90 (11%), Positives = 27/90 (30%), Gaps = 4/90 (4%)
Query: 8 LSYLKRLEITGASNLTRVRKGAFA--DNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLN 65
+ L E NL ++ ++ L + L N+ ++
Sbjct: 233 VHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYT-NDFSDDIVKFHCLANVSAMS 291
Query: 66 LKENAFTSFSESMLAWPELRTIDIAENPIE 95
L + E + + +++ I ++
Sbjct: 292 LAGVSIKYL-EDVPKHFKWQSLSIIRCQLK 320
Score = 34.2 bits (79), Expect = 0.009
Identities = 16/94 (17%), Positives = 33/94 (35%), Gaps = 8/94 (8%)
Query: 10 YLKRLEITGASNLTRVRKGAFADNLNLETLTLNKN-----PKLKIIEEDALVGLPNLYHL 64
L L + G N + + K + L L L+I E + GL ++
Sbjct: 205 KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTID 264
Query: 65 NLKENAFTSFSESMLAW---PELRTIDIAENPIE 95
+ FS+ ++ + + + +A I+
Sbjct: 265 EFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIK 298
Score = 34.2 bits (79), Expect = 0.009
Identities = 13/55 (23%), Positives = 19/55 (34%), Gaps = 1/55 (1%)
Query: 21 NLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFS 75
+ ++ AF + L LTL N I + L L L+ L F
Sbjct: 192 PIDFIQDQAFQ-GIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDER 245
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein,
neurite growth regulation; HET: NAG BMA; 2.00A {Mus
musculus}
Length = 361
Score = 71.8 bits (176), Expect = 9e-16
Identities = 29/136 (21%), Positives = 49/136 (36%), Gaps = 15/136 (11%)
Query: 6 KGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVG---LPNLY 62
L L+ L + +++ V + AF D L+ L L++N ++ + + LP L
Sbjct: 109 SDLQALEVLLLYN-NHIVVVDRNAFEDMAQLQKLYLSQN-QISRFPVELIKDGNKLPKLM 166
Query: 63 HLNLKENAFTSFSESM---LAWPELRTIDIAENPIECGCNILWLREMLVRRNTSAVF--- 116
L+L N + L + + NP+EC C + L R S+V
Sbjct: 167 LLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLECDCKLYQLFSHWQYRQLSSVMDFQ 226
Query: 117 ----CNSPAPLKYKSL 128
C L
Sbjct: 227 EDLYCMHSKKLHNIFS 242
Score = 49.8 bits (119), Expect = 4e-08
Identities = 24/77 (31%), Positives = 37/77 (48%), Gaps = 3/77 (3%)
Query: 21 NLTRVRKGAFADNL-NLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESML 79
NL+R+R L NL +L L+ N L I +A V +PNL +L+L N + E +
Sbjct: 50 NLSRLRAEWTPTRLTNLHSLLLSHN-HLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLF 108
Query: 80 AW-PELRTIDIAENPIE 95
+ L + + N I
Sbjct: 109 SDLQALEVLLLYNNHIV 125
Score = 34.0 bits (78), Expect = 0.013
Identities = 18/76 (23%), Positives = 28/76 (36%), Gaps = 4/76 (5%)
Query: 21 NLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESMLA 80
L V + + L L+ N ++ E L NL+ L L N S
Sbjct: 29 QLPNVPQSLPSY---TALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFV 85
Query: 81 W-PELRTIDIAENPIE 95
P LR +D++ N +
Sbjct: 86 PVPNLRYLDLSSNHLH 101
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2
related L recognition, receptor, innate immunity,
glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus
musculus} PDB: 3b2d_A* 3rg1_A*
Length = 606
Score = 69.7 bits (171), Expect = 6e-15
Identities = 32/158 (20%), Positives = 56/158 (35%), Gaps = 32/158 (20%)
Query: 6 KGLSYLKRLEITG--ASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYH 63
GL L+ L + G + + LE L L+ L I++ A L + H
Sbjct: 446 DGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFC-DLSSIDQHAFTSLKMMNH 504
Query: 64 LNLKENAFTSFSESMLA------------------------WPELRTIDIAENPIECGCN 99
++L N TS S L+ + RTI++ +NP++C C+
Sbjct: 505 VDLSHNRLTSSSIEALSHLKGIYLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCS 564
Query: 100 ILWLREMLVRRNT-----SAVFCNSPAPLKYKSLISLS 132
++ E C +P L+ L ++
Sbjct: 565 NIYFLEWYKENMQKLEDTEDTLCENPPLLRGVRLSDVT 602
Score = 55.0 bits (133), Expect = 7e-10
Identities = 23/90 (25%), Positives = 35/90 (38%), Gaps = 3/90 (3%)
Query: 6 KGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLN 65
L L L++T + + + F L+TL L N L + E AL G L HL
Sbjct: 54 SRLINLTFLDLTR-CQIYWIHEDTFQSQHRLDTLVLTAN-PLIFMAETALSGPKALKHLF 111
Query: 66 LKENAFTSFSESMLAW-PELRTIDIAENPI 94
+ +S L L ++ + N I
Sbjct: 112 FIQTGISSIDFIPLHNQKTLESLYLGSNHI 141
Score = 53.5 bits (129), Expect = 3e-09
Identities = 18/90 (20%), Positives = 31/90 (34%), Gaps = 3/90 (3%)
Query: 7 GLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNL 66
L L +T + L + + A + L+ L + + I+ L L L L
Sbjct: 79 SQHRLDTLVLTA-NPLIFMAETALSGPKALKHLFFIQT-GISSIDFIPLHNQKTLESLYL 136
Query: 67 KENAFTSFSESMLAW-PELRTIDIAENPIE 95
N +S +L+ +D N I
Sbjct: 137 GSNHISSIKLPKGFPTEKLKVLDFQNNAIH 166
Score = 51.2 bits (123), Expect = 1e-08
Identities = 20/91 (21%), Positives = 36/91 (39%), Gaps = 2/91 (2%)
Query: 6 KGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLN 65
+ LS+L+ L ++ + ++ AF + LE L L + L L LN
Sbjct: 373 RNLSHLQSLNLSY-NEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLN 431
Query: 66 LKENAFTSFSESMLAW-PELRTIDIAENPIE 95
L + SE + P L+ +++ N
Sbjct: 432 LSHSLLDISSEQLFDGLPALQHLNLQGNHFP 462
Score = 49.2 bits (118), Expect = 7e-08
Identities = 17/75 (22%), Positives = 30/75 (40%), Gaps = 2/75 (2%)
Query: 21 NLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESMLA 80
L ++ F+ +NL L L + ++ I ED L L L N +E+ L+
Sbjct: 44 VLPTIQNTTFSRLINLTFLDLTRC-QIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALS 102
Query: 81 W-PELRTIDIAENPI 94
L+ + + I
Sbjct: 103 GPKALKHLFFIQTGI 117
Score = 49.2 bits (118), Expect = 8e-08
Identities = 19/98 (19%), Positives = 43/98 (43%), Gaps = 4/98 (4%)
Query: 1 MEKEVKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPN 60
+ + GLS LK+L ++ + + + + ++ +L L++ N K + L L N
Sbjct: 293 LPSGLVGLSTLKKLVLSA-NKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLEN 351
Query: 61 LYHLNLKENAFTSFSESMLAW---PELRTIDIAENPIE 95
L L+L + + L L++++++ N
Sbjct: 352 LRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPL 389
Score = 48.1 bits (115), Expect = 2e-07
Identities = 21/93 (22%), Positives = 35/93 (37%), Gaps = 4/93 (4%)
Query: 6 KGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIE--EDALVGLPNLYH 63
L L I G + + G + NL L L+ + ++ + L L +L
Sbjct: 322 SNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHD-DIETSDCCNLQLRNLSHLQS 380
Query: 64 LNLKENAFTSFSESMLA-WPELRTIDIAENPIE 95
LNL N S P+L +D+A ++
Sbjct: 381 LNLSYNEPLSLKTEAFKECPQLELLDLAFTRLK 413
Score = 45.0 bits (107), Expect = 2e-06
Identities = 22/95 (23%), Positives = 37/95 (38%), Gaps = 7/95 (7%)
Query: 6 KGLSYLKRLEITGASNLTRV-RKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHL 64
K L+ L++ + L + F + L+ L L+ + L I E GLP L HL
Sbjct: 397 KECPQLELLDLAF-TRLKVKDAQSPFQNLHLLKVLNLSHS-LLDISSEQLFDGLPALQHL 454
Query: 65 NLKENAFTSFSESMLAW----PELRTIDIAENPIE 95
NL+ N F + L + ++ +
Sbjct: 455 NLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLS 489
Score = 45.0 bits (107), Expect = 2e-06
Identities = 22/139 (15%), Positives = 46/139 (33%), Gaps = 10/139 (7%)
Query: 6 KGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLN 65
G LK L + ++ + + LE+L L N + I+ L L+
Sbjct: 102 SGPKALKHLFFIQ-TGISSIDFIPLHNQKTLESLYLGSN-HISSIKLPKGFPTEKLKVLD 159
Query: 66 LKENAFTSFSESMLA-WPELR--TIDIAENPIEC----GCNILWLREMLVRRN-TSAVFC 117
+ NA S+ ++ + ++++ N I + + + V
Sbjct: 160 FQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIF 219
Query: 118 NSPAPLKYKSLISLSAEDL 136
+SL + ED+
Sbjct: 220 KGLKNSTIQSLWLGTFEDM 238
Score = 43.9 bits (104), Expect = 6e-06
Identities = 12/91 (13%), Positives = 30/91 (32%), Gaps = 4/91 (4%)
Query: 7 GLSYLKRLEITGASNLTRVRKGAFAD--NLNLETLTLNKNPKLKIIEEDALVGLPNLYHL 64
+ L + + F +++E++ L K+ I + L L
Sbjct: 226 TIQSLWLGTFED-MDDEDISPAVFEGLCEMSVESINLQKH-YFFNISSNTFHCFSGLQEL 283
Query: 65 NLKENAFTSFSESMLAWPELRTIDIAENPIE 95
+L + ++ L+ + ++ N E
Sbjct: 284 DLTATHLSELPSGLVGLSTLKKLVLSANKFE 314
Score = 34.6 bits (80), Expect = 0.008
Identities = 13/94 (13%), Positives = 33/94 (35%), Gaps = 6/94 (6%)
Query: 7 GLSYLKRLEITGASN-LTRVRKGAFADNLNLETLTLNKNP-KLKIIEEDALVGLPNLYHL 64
L L + N + + GAF D+ ++L L I + + +L+
Sbjct: 175 SLQQATNLSLNLNGNDIAGIEPGAF-DSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLG 233
Query: 65 NLKENAFTSFSESMLAWPE---LRTIDIAENPIE 95
++ S ++ + +I++ ++
Sbjct: 234 TFEDMDDEDISPAVFEGLCEMSVESINLQKHYFF 267
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat,
asymmetric homodimer, glycoprotein, immune system; HET:
NAG FUC; 26.00A {Homo sapiens}
Length = 844
Score = 67.9 bits (166), Expect = 3e-14
Identities = 34/137 (24%), Positives = 57/137 (41%), Gaps = 12/137 (8%)
Query: 6 KGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLN 65
+GLS+L+ L + + L + G F+ L L+LN N +L ++ + L NL L+
Sbjct: 477 EGLSHLQVLYLNH-NYLNSLPPGVFSHLTALRGLSLNSN-RLTVLSHNDL--PANLEILD 532
Query: 66 LKENAFTSFSESMLAWPELRTIDIAENPIECGCNILWLREML------VRRNTSAVFCNS 119
+ N + + + L +DI N C C + L + + ++C
Sbjct: 533 ISRNQLLAPNPDVF--VSLSVLDITHNKFICECELSTFINWLNHTNVTIAGPPADIYCVY 590
Query: 120 PAPLKYKSLISLSAEDL 136
P SL SLS E
Sbjct: 591 PDSFSGVSLFSLSTEGC 607
Score = 54.8 bits (132), Expect = 8e-10
Identities = 24/113 (21%), Positives = 42/113 (37%), Gaps = 6/113 (5%)
Query: 6 KGLSYLKRLEITGASNLTR--VRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYH 63
+GL +L L + L+ ++ G F + L L L+KN + + L +L
Sbjct: 94 QGLFHLFELRLYF-CGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKS 152
Query: 64 LNLKENAFTSFSESMLAW---PELRTIDIAENPIECGCNILWLREMLVRRNTS 113
++ N E L L +A N + ++ W + M RN
Sbjct: 153 IDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMV 205
Score = 54.8 bits (132), Expect = 1e-09
Identities = 23/92 (25%), Positives = 38/92 (41%), Gaps = 4/92 (4%)
Query: 6 KGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLN 65
L L+ LE+ + K AF + NL L L + K+ + DA GL +L+ L
Sbjct: 45 PFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSS-KIYFLHPDAFQGLFHLFELR 103
Query: 66 LKENAFTSFSESMLAW---PELRTIDIAENPI 94
L + + L +D+++N I
Sbjct: 104 LYFCGLSDAVLKDGYFRNLKALTRLDLSKNQI 135
Score = 53.7 bits (129), Expect = 2e-09
Identities = 17/91 (18%), Positives = 34/91 (37%), Gaps = 2/91 (2%)
Query: 6 KGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLN 65
+ L+ +RL ++ + + V +F L+ L L I+++A LPNL L+
Sbjct: 21 QVLNTTERLLLSF-NYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILD 79
Query: 66 LKENAFTSFSESMLAW-PELRTIDIAENPIE 95
L + L + + +
Sbjct: 80 LGSSKIYFLHPDAFQGLFHLFELRLYFCGLS 110
Score = 51.7 bits (124), Expect = 1e-08
Identities = 24/88 (27%), Positives = 40/88 (45%), Gaps = 3/88 (3%)
Query: 8 LSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLK 67
S ++ L+++ + + F +L+ L L N K+ I ++A GL NL LNL
Sbjct: 265 RSSVRHLDLSH-GFVFSLNSRVFETLKDLKVLNLAYN-KINKIADEAFYGLDNLQVLNLS 322
Query: 68 ENAFTSFSESMLAW-PELRTIDIAENPI 94
N S P++ ID+ +N I
Sbjct: 323 YNLLGELYSSNFYGLPKVAYIDLQKNHI 350
Score = 49.8 bits (119), Expect = 5e-08
Identities = 21/91 (23%), Positives = 39/91 (42%), Gaps = 6/91 (6%)
Query: 6 KGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLN 65
GL L+ L ++ + L + F + + L KN + II++ L L L+
Sbjct: 311 YGLDNLQVLNLSY-NLLGELYSSNFYGLPKVAYIDLQKN-HIAIIQDQTFKFLEKLQTLD 368
Query: 66 LKENAFTSFSESMLAWPELRTIDIAENPIEC 96
L++NA T+ P + I ++ N +
Sbjct: 369 LRDNALTTIH----FIPSIPDIFLSGNKLVT 395
Score = 39.8 bits (93), Expect = 1e-04
Identities = 18/82 (21%), Positives = 30/82 (36%), Gaps = 7/82 (8%)
Query: 21 NLTRVRKGAFADNL-NLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESML 79
L + F + +L+ L LN+N + P+L L L EN E+ L
Sbjct: 412 RLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETEL 471
Query: 80 AW------PELRTIDIAENPIE 95
W L+ + + N +
Sbjct: 472 CWDVFEGLSHLQVLYLNHNYLN 493
Score = 32.1 bits (73), Expect = 0.055
Identities = 17/67 (25%), Positives = 30/67 (44%), Gaps = 2/67 (2%)
Query: 32 DNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESMLAW--PELRTIDI 89
NL + L++N + L+ +P+L L L +N F+S S P L + +
Sbjct: 399 INLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFL 458
Query: 90 AENPIEC 96
EN ++
Sbjct: 459 GENMLQL 465
Score = 29.8 bits (67), Expect = 0.35
Identities = 11/80 (13%), Positives = 25/80 (31%), Gaps = 8/80 (10%)
Query: 7 GLSYLKRLEITGASNLTRVRKGAFAD--NLNLETLTLNKNPKLKIIEEDALVGLPNLYHL 64
L+ LK ++ + + + V + L +L N + D + ++
Sbjct: 146 KLNSLKSIDFSS-NQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNM 204
Query: 65 NLKE-----NAFTSFSESML 79
L+ N +T
Sbjct: 205 VLEILDVSGNGWTVDITGNF 224
>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat,
glycoprotein, immune response, inflamma response, innate
immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO
MYR NAG GCS; 3.10A {Homo sapiens}
Length = 605
Score = 67.7 bits (166), Expect = 3e-14
Identities = 22/134 (16%), Positives = 51/134 (38%), Gaps = 9/134 (6%)
Query: 6 KGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLN 65
L L L+++ L ++ AF +L+ L ++ N ++ L +L L+
Sbjct: 467 TELRNLTFLDLSQ-CQLEQLSPTAFNSLSSLQVLNMSHN-NFFSLDTFPYKCLNSLQVLD 524
Query: 66 LKENAFTSFSESMLA--WPELRTIDIAENPIECGCNILWLREMLVRRNT-----SAVFCN 118
N + + L L +++ +N C C + + + + C
Sbjct: 525 YSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECA 584
Query: 119 SPAPLKYKSLISLS 132
+P+ + ++SL+
Sbjct: 585 TPSDKQGMPVLSLN 598
Score = 48.5 bits (116), Expect = 1e-07
Identities = 20/91 (21%), Positives = 38/91 (41%), Gaps = 3/91 (3%)
Query: 6 KGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLN 65
L+ L+++ + + GA+ +L TL L N ++ + A GL +L L
Sbjct: 49 FSFPELQVLDLSR-CEIQTIEDGAYQSLSHLSTLILTGN-PIQSLALGAFSGLSSLQKLV 106
Query: 66 LKENAFTSFSESMLAW-PELRTIDIAENPIE 95
E S + L+ +++A N I+
Sbjct: 107 AVETNLASLENFPIGHLKTLKELNVAHNLIQ 137
Score = 45.0 bits (107), Expect = 2e-06
Identities = 18/87 (20%), Positives = 37/87 (42%), Gaps = 3/87 (3%)
Query: 9 SYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKE 68
K L+++ + L + +F L+ L L++ +++ IE+ A L +L L L
Sbjct: 28 FSTKNLDLSF-NPLRHLGSYSFFSFPELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILTG 85
Query: 69 NAFTSFSESMLAW-PELRTIDIAENPI 94
N S + + L+ + E +
Sbjct: 86 NPIQSLALGAFSGLSSLQKLVAVETNL 112
Score = 43.5 bits (103), Expect = 8e-06
Identities = 21/89 (23%), Positives = 37/89 (41%), Gaps = 6/89 (6%)
Query: 8 LSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEE--DALVGLPNLYHLN 65
L LKRL ++ + D +LE L L++N L + G +L +L+
Sbjct: 324 LKSLKRLTF---TSNKGGNAFSEVDLPSLEFLDLSRN-GLSFKGCCSQSDFGTTSLKYLD 379
Query: 66 LKENAFTSFSESMLAWPELRTIDIAENPI 94
L N + S + L +L +D + +
Sbjct: 380 LSFNGVITMSSNFLGLEQLEHLDFQHSNL 408
Score = 40.0 bits (94), Expect = 1e-04
Identities = 16/89 (17%), Positives = 33/89 (37%), Gaps = 3/89 (3%)
Query: 7 GLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNL 66
G + LK L+++ + + + F LE L + ++ E + L NL +L++
Sbjct: 371 GTTSLKYLDLSF-NGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDI 428
Query: 67 KENAFTSFSESMLAW-PELRTIDIAENPI 94
+ L + +A N
Sbjct: 429 SHTHTRVAFNGIFNGLSSLEVLKMAGNSF 457
Score = 39.2 bits (92), Expect = 2e-04
Identities = 22/95 (23%), Positives = 36/95 (37%), Gaps = 6/95 (6%)
Query: 7 GLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNL 66
GLS L++L +NL + L+ L + N + L NL HL+L
Sbjct: 98 GLSSLQKLVAVE-TNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDL 156
Query: 67 KENAFTSFSESMLAW-----PELRTIDIAENPIEC 96
N S + L ++D++ NP+
Sbjct: 157 SSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNF 191
Score = 38.1 bits (89), Expect = 5e-04
Identities = 21/95 (22%), Positives = 33/95 (34%), Gaps = 7/95 (7%)
Query: 6 KGLSYLKRLEITGASNLTRVRKGAFADNL-NLETLTLNKNPKLKIIEEDALVGLPNL--- 61
L LK L + + + + + NL NLE L L+ N K++ I L L +
Sbjct: 121 GHLKTLKELNVAH-NLIQSFKLPEYFSNLTNLEHLDLSSN-KIQSIYCTDLRVLHQMPLL 178
Query: 62 -YHLNLKENAFTSFSESMLAWPELRTIDIAENPIE 95
L+L N L + + N
Sbjct: 179 NLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDS 213
Score = 31.9 bits (73), Expect = 0.056
Identities = 14/90 (15%), Positives = 25/90 (27%), Gaps = 3/90 (3%)
Query: 8 LSYLKRLEITGASNLTRVRKGAFAD--NLNLETLTLNKNPKLKIIEEDALVGLPNLYHLN 65
+ L E NL + K A NL +E L D L N+ +
Sbjct: 229 VHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFS 288
Query: 66 LKENAFTSFSESMLAWPELRTIDIAENPIE 95
L + + + +++
Sbjct: 289 LVSVTIERVKDFSYNF-GWQHLELVNCKFG 317
Score = 31.5 bits (72), Expect = 0.074
Identities = 20/125 (16%), Positives = 32/125 (25%), Gaps = 5/125 (4%)
Query: 10 YLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKEN 69
++ + F N+ + +L I HL L
Sbjct: 258 TIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSV---TIERVKDFSYNFGWQHLELVNC 314
Query: 70 AFTSFSESML-AWPELRTIDIAENPIECGCNILWLREMLVRRNT-SAVFCNSPAPLKYKS 127
F F L + L ++ L + + RN S C S + S
Sbjct: 315 KFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTS 374
Query: 128 LISLS 132
L L
Sbjct: 375 LKYLD 379
Score = 31.2 bits (71), Expect = 0.10
Identities = 13/55 (23%), Positives = 21/55 (38%), Gaps = 1/55 (1%)
Query: 21 NLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFS 75
+ ++ GAF + L LTL N + + + GL L L F +
Sbjct: 188 PMNFIQPGAFK-EIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEG 241
Score = 30.8 bits (70), Expect = 0.15
Identities = 17/65 (26%), Positives = 29/65 (44%), Gaps = 6/65 (9%)
Query: 34 LNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFT---SFSESMLAWPELRTIDIA 90
+L+ LT N K + V LP+L L+L N + S+S L+ +D++
Sbjct: 325 KSLKRLTFTSN---KGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLS 381
Query: 91 ENPIE 95
N +
Sbjct: 382 FNGVI 386
Score = 25.8 bits (57), Expect = 6.9
Identities = 10/70 (14%), Positives = 22/70 (31%), Gaps = 7/70 (10%)
Query: 33 NLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESMLAWPE-------LR 85
L + L L + +E+ L L +L ++E + + +
Sbjct: 226 GLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVS 285
Query: 86 TIDIAENPIE 95
+ + IE
Sbjct: 286 SFSLVSVTIE 295
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors,
glycocalicin, leucine rich repeats, BLOO clotting; HET:
NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB:
1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A*
1p8v_A* 1u0n_D 3p72_A
Length = 290
Score = 63.6 bits (155), Expect = 5e-13
Identities = 33/111 (29%), Positives = 46/111 (41%), Gaps = 5/111 (4%)
Query: 7 GLSYLKRLEITGASN-LTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLN 65
GL L+ L + N L + G LE L+L N L + L GL NL L
Sbjct: 122 GLGELQELYL--KGNELKTLPPGLLTPTPKLEKLSLANN-NLTELPAGLLNGLENLDTLL 178
Query: 66 LKENAFTSFSESMLAWPELRTIDIAENPIECGCNILWLREMLVRRNTSAVF 116
L+EN+ + + L + NP C C IL+ R L + N V+
Sbjct: 179 LQENSLYTIPKGFFGSHLLPFAFLHGNPWLCNCEILYFRRWL-QDNAENVY 228
Score = 39.3 bits (92), Expect = 2e-04
Identities = 15/75 (20%), Positives = 25/75 (33%), Gaps = 3/75 (4%)
Query: 21 NLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESMLA 80
L L L L++ ++ + LP L L+L N S
Sbjct: 42 LLYTFSLATLMPYTRLTQLNLDRA---ELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQT 98
Query: 81 WPELRTIDIAENPIE 95
P L +D++ N +
Sbjct: 99 LPALTVLDVSFNRLT 113
Score = 36.2 bits (84), Expect = 0.002
Identities = 18/68 (26%), Positives = 28/68 (41%), Gaps = 2/68 (2%)
Query: 28 GAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESMLAW-PELRT 86
L L ++ N +L + AL GL L L LK N + +L P+L
Sbjct: 94 LLGQTLPALTVLDVSFN-RLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEK 152
Query: 87 IDIAENPI 94
+ +A N +
Sbjct: 153 LSLANNNL 160
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein;
innate immunity, leucine-rich repeat, innate immune
receptor system; HET: NAG; 2.47A {Danio rerio} PDB:
3v44_A*
Length = 455
Score = 62.5 bits (152), Expect = 2e-12
Identities = 31/108 (28%), Positives = 54/108 (50%), Gaps = 6/108 (5%)
Query: 7 GLSYLKRLEITGASNLTRVRKGAFADNL-NLETLTLNKNPKLKIIEEDALVGLPNLYHLN 65
GL++L +L ++ + L + F +NL LE L L+ N ++ + + + +GLPNL L
Sbjct: 321 GLTHLLKLNLSQ-NFLGSIDSRMF-ENLDKLEVLDLSYN-HIRALGDQSFLGLPNLKELA 377
Query: 66 LKENAFTSFSESMLAW-PELRTIDIAENPIECGCN-ILWLREMLVRRN 111
L N S + + L+ I + NP +C C I +L L + +
Sbjct: 378 LDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNKNS 425
Score = 51.7 bits (124), Expect = 1e-08
Identities = 23/97 (23%), Positives = 40/97 (41%), Gaps = 6/97 (6%)
Query: 7 GLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLK--IIEEDALVGLPNLYHL 64
GLS L L++ + ++ GAF NLE LTL + L ++ + L +L L
Sbjct: 77 GLSSLIILKLDY-NQFLQLETGAFNGLANLEVLTLTQC-NLDGAVLSGNFFKPLTSLEML 134
Query: 65 NLKENAFTSFSESML--AWPELRTIDIAENPIECGCN 99
L++N + +D+ N ++ C
Sbjct: 135 VLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICE 171
Score = 49.7 bits (119), Expect = 4e-08
Identities = 23/77 (29%), Positives = 39/77 (50%), Gaps = 2/77 (2%)
Query: 21 NLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESMLA 80
+ + K F+ +LE LTL +N ++ I+++A GL +L LNL +N S M
Sbjct: 286 KIFALLKSVFSHFTDLEQLTLAQN-EINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFE 344
Query: 81 W-PELRTIDIAENPIEC 96
+L +D++ N I
Sbjct: 345 NLDKLEVLDLSYNHIRA 361
Score = 44.4 bits (105), Expect = 4e-06
Identities = 17/68 (25%), Positives = 27/68 (39%), Gaps = 1/68 (1%)
Query: 6 KGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLN 65
L L+ L++ + +R F +L L L+ N + +E A GL NL L
Sbjct: 51 SRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN-QFLQLETGAFNGLANLEVLT 109
Query: 66 LKENAFTS 73
L +
Sbjct: 110 LTQCNLDG 117
Score = 41.7 bits (98), Expect = 3e-05
Identities = 12/76 (15%), Positives = 30/76 (39%), Gaps = 1/76 (1%)
Query: 21 NLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESMLA 80
++ + + +F+ +L+ L + + +I + GL +L L L N F
Sbjct: 41 SIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFN 100
Query: 81 W-PELRTIDIAENPIE 95
L + + + ++
Sbjct: 101 GLANLEVLTLTQCNLD 116
Score = 35.9 bits (83), Expect = 0.002
Identities = 18/96 (18%), Positives = 37/96 (38%), Gaps = 6/96 (6%)
Query: 6 KGLSYLKRLEITGAS-NLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDAL-VGLPNLYH 63
GL+ L+ L +T + + + F +LE L L N +K I+ + + + +
Sbjct: 100 NGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDN-NIKKIQPASFFLNMRRFHV 158
Query: 64 LNLKENAFTSFSESM---LAWPELRTIDIAENPIEC 96
L+L N S E + ++ ++
Sbjct: 159 LDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQD 194
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor,
GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB:
3rez_A*
Length = 130
Score = 59.0 bits (143), Expect = 3e-12
Identities = 25/88 (28%), Positives = 39/88 (44%), Gaps = 6/88 (6%)
Query: 57 GLP-NLYHLNLKENAFTSFSESMLAW-PELRTIDIAENPIECGCNILWLREMLVRRNTSA 114
P + L L N T+ +L P LRT + NP C C ++ LR L R A
Sbjct: 28 AFPVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRCDCRLVPLRAWLAGRPERA 87
Query: 115 ----VFCNSPAPLKYKSLISLSAEDLGS 138
+ C +P L+ + L L+ ++L +
Sbjct: 88 PYRDLRCVAPPALRGRLLPYLAEDELRA 115
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2,
lipopeptide, innate immunity, glycoprotein, immune RES
inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Length = 353
Score = 60.5 bits (147), Expect = 7e-12
Identities = 21/125 (16%), Positives = 41/125 (32%), Gaps = 10/125 (8%)
Query: 6 KGLSYLKRLEITG----ASNLTRVRKGAFADNLNLETLTLNKNPKLKIIE-EDALVGLPN 60
S ++ LE+ + + + G + T K + + L +
Sbjct: 219 DVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISG 278
Query: 61 LYHLNLKENAFTSFSESMLA-WPELRTIDIAENPIECGCN-ILWLREMLVR---RNTSAV 115
L L N S + + L+ I + NP +C C I +L L + + +
Sbjct: 279 LLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNKNSQKEQGSA 338
Query: 116 FCNSP 120
C+
Sbjct: 339 KCSGS 343
Score = 50.9 bits (122), Expect = 2e-08
Identities = 17/90 (18%), Positives = 39/90 (43%), Gaps = 2/90 (2%)
Query: 7 GLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNL 66
L+ L+ L + T++++ FA LE L ++ + L+ E +L + N+ HL L
Sbjct: 147 HLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDAS-DLQSYEPKSLKSIQNVSHLIL 205
Query: 67 KENAFTSFSESMLAW-PELRTIDIAENPIE 95
E + + +++ + ++
Sbjct: 206 HMKQHILLLEIFVDVTSSVECLELRDTDLD 235
Score = 50.5 bits (121), Expect = 2e-08
Identities = 21/77 (27%), Positives = 35/77 (45%), Gaps = 2/77 (2%)
Query: 21 NLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESMLA 80
+T + +NL+ L L N + IEED+ L +L HL+L N ++ S S
Sbjct: 63 RITYISNSDLQRCVNLQALVLTSN-GINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFK 121
Query: 81 W-PELRTIDIAENPIEC 96
L +++ NP +
Sbjct: 122 PLSSLTFLNLLGNPYKT 138
Score = 50.1 bits (120), Expect = 3e-08
Identities = 20/97 (20%), Positives = 39/97 (40%), Gaps = 11/97 (11%)
Query: 7 GLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNL 66
GL++L+ LEI AS+L + N+ L L+ ++ E + ++ L L
Sbjct: 172 GLTFLEELEI-DASDLQSYEPKSLKSIQNVSHLILHMKQ-HILLLEIFVDVTSSVECLEL 229
Query: 67 KENAFTSFSESMLA---------WPELRTIDIAENPI 94
++ +F S L+ R + I + +
Sbjct: 230 RDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESL 266
Score = 49.0 bits (117), Expect = 9e-08
Identities = 15/90 (16%), Positives = 28/90 (31%), Gaps = 3/90 (3%)
Query: 7 GLSYLKRLEITGASNLTRVR-KGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLN 65
LS L L + G + + F+ L+ L + I+ GL L L
Sbjct: 122 PLSSLTFLNLLG-NPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELE 180
Query: 66 LKENAFTSFSESMLAW-PELRTIDIAENPI 94
+ + S+ L + + +
Sbjct: 181 IDASDLQSYEPKSLKSIQNVSHLILHMKQH 210
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance,
leucine-rich repeat glycoprotein, EGF-like domain,
signal protein; 2.8A {Drosophila melanogaster} SCOP:
c.10.2.7
Length = 192
Score = 59.2 bits (144), Expect = 7e-12
Identities = 37/142 (26%), Positives = 65/142 (45%), Gaps = 23/142 (16%)
Query: 6 KGLSYLKRLEITGASN-LTRVRKGAFADNL-NLETLTLNKNPKLKIIEEDALVGLPNLYH 63
L +L +LE+ N LT + AF + +++ L L +N K+K I +GL L
Sbjct: 51 GRLPHLVKLELK--RNQLTGIEPNAF-EGASHIQELQLGEN-KIKEISNKMFLGLHQLKT 106
Query: 64 LNLKEN--------AFTSFSESMLAWPELRTIDIAENPIECGCNILWLREMLVRR--NTS 113
LNL +N +F + L ++++A NP C C++ W E L ++ N
Sbjct: 107 LNLYDNQISCVMPGSFEHLNS-------LTSLNLASNPFNCNCHLAWFAEWLRKKSLNGG 159
Query: 114 AVFCNSPAPLKYKSLISLSAED 135
A C +P+ ++ + L +
Sbjct: 160 AARCGAPSKVRDVQIKDLPHSE 181
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex,
GPCR, graves' disea autoimmunity, receptor-autoantibody
complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB:
3g04_C*
Length = 239
Score = 59.6 bits (145), Expect = 9e-12
Identities = 17/90 (18%), Positives = 35/90 (38%), Gaps = 2/90 (2%)
Query: 6 KGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLN 65
L + R+ ++ L ++ +F + + + + L I+ DAL LP L L
Sbjct: 52 SNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG 111
Query: 66 LKENAFTSFSESMLAW--PELRTIDIAENP 93
+ F + + ++I +NP
Sbjct: 112 IFNTGLKMFPDLTKVYSTDIFFILEITDNP 141
Score = 49.6 bits (119), Expect = 3e-08
Identities = 13/77 (16%), Positives = 33/77 (42%), Gaps = 2/77 (2%)
Query: 21 NLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKEN-AFTSFSESML 79
+L + AF++ N+ + ++ + L+ +E + L + H+ ++ T L
Sbjct: 42 HLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDAL 101
Query: 80 AW-PELRTIDIAENPIE 95
P L+ + I ++
Sbjct: 102 KELPLLKFLGIFNTGLK 118
Score = 44.6 bits (106), Expect = 2e-06
Identities = 17/61 (27%), Positives = 31/61 (50%), Gaps = 2/61 (3%)
Query: 21 NLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPN-LYHLNLKENAFTSFSESML 79
T V+ AF + L+ + LNKN L +I++DA G+ + L++ + + T+ L
Sbjct: 167 GFTSVQGYAF-NGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSKGL 225
Query: 80 A 80
Sbjct: 226 E 226
Score = 33.8 bits (78), Expect = 0.010
Identities = 11/60 (18%), Positives = 21/60 (35%), Gaps = 2/60 (3%)
Query: 8 LSYLKRLEITGASNLTRVRKGAFADNLN-LETLTLNKNPKLKIIEEDALVGLPNLYHLNL 66
+ L + + LT + K AF + L +++ + + L L L N
Sbjct: 178 GTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQT-SVTALPSKGLEHLKELIARNT 236
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex,
leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A
{Homo sapiens} PDB: 1xwd_C*
Length = 350
Score = 59.5 bits (144), Expect = 2e-11
Identities = 19/89 (21%), Positives = 36/89 (40%), Gaps = 1/89 (1%)
Query: 6 KGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLN 65
G L+++EI+ L + F++ L + + K L I +A LPNL +L
Sbjct: 51 SGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLL 110
Query: 66 LKENAFTSFSE-SMLAWPELRTIDIAENP 93
+ + + + +DI +N
Sbjct: 111 ISNTGIKHLPDVHKIHSLQKVLLDIQDNI 139
Score = 52.9 bits (127), Expect = 3e-09
Identities = 21/77 (27%), Positives = 39/77 (50%), Gaps = 2/77 (2%)
Query: 21 NLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNL-KENAFTSFSESML 79
L ++KGAF+ +LE + +++N L++IE D LP L+ + + K N +
Sbjct: 41 KLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAF 100
Query: 80 AW-PELRTIDIAENPIE 95
P L+ + I+ I+
Sbjct: 101 QNLPNLQYLLISNTGIK 117
Score = 52.5 bits (126), Expect = 5e-09
Identities = 22/136 (16%), Positives = 38/136 (27%), Gaps = 27/136 (19%)
Query: 7 GLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNL 66
GLS+ + + + + AF + L+ L L+ N L+ + D G L++
Sbjct: 151 GLSFESVILWLNKNGIQEIHNSAF-NGTQLDELNLSDNNNLEELPNDVFHGASGPVILDI 209
Query: 67 KENAFTSFSESMLAW---------------------PELRTIDIAENPIECGCNILWLRE 105
S L L + P C W R+
Sbjct: 210 SRTRIHSLPSYGLENLKKLRARSTYNLKKLPTLEKLVALMEASLT-YPSHCCAFANWRRQ 268
Query: 106 MLVRRNTSAVFCNSPA 121
+ + CN
Sbjct: 269 I----SELHPICNKSI 280
Score = 50.2 bits (120), Expect = 3e-08
Identities = 18/88 (20%), Positives = 36/88 (40%), Gaps = 2/88 (2%)
Query: 6 KGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLP-NLYHL 64
+ L L+ L I+ + + + +L L + N + IE ++ VGL L
Sbjct: 101 QNLPNLQYLLISN-TGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVIL 159
Query: 65 NLKENAFTSFSESMLAWPELRTIDIAEN 92
L +N S +L +++++N
Sbjct: 160 WLNKNGIQEIHNSAFNGTQLDELNLSDN 187
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG;
2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Length = 680
Score = 57.3 bits (139), Expect = 1e-10
Identities = 31/170 (18%), Positives = 53/170 (31%), Gaps = 43/170 (25%)
Query: 6 KGLSYLKRLEITGASNLTRVRKGA--------FADNLNLETLTLNKNPKLKIIEEDALVG 57
+GL L+ L++ +NL R+ K A +L L L N I +
Sbjct: 501 EGLEKLEILDLQH-NNLARLWKHANPGGPIYFLKGLSHLHILNLESN-GFDEIPVEVFKD 558
Query: 58 LPNLYHLNLKENAFTSFSESMLA--------------------------WPELRTIDIAE 91
L L ++L N + S+ + L +D+
Sbjct: 559 LFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRF 618
Query: 92 NPIECGC-NILWLREML------VRRNTSAVFCNSPAPLKYKSLISLSAE 134
NP +C C +I W + + +S CN+P +
Sbjct: 619 NPFDCTCESIAWFVNWINETHTNIPELSSHYLCNTPPHYHGFPVRLFDTS 668
Score = 53.9 bits (130), Expect = 2e-09
Identities = 21/92 (22%), Positives = 38/92 (41%), Gaps = 5/92 (5%)
Query: 7 GLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNL 66
+ L L + +++ +++ F NL TL L+ N L + V L NL L L
Sbjct: 95 FCTNLTELHLMS-NSIQKIKNNPFVKQKNLITLDLSHN-GLSSTKLGTQVQLENLQELLL 152
Query: 67 KENAFTSFSESMLAW---PELRTIDIAENPIE 95
N + L L+ ++++ N I+
Sbjct: 153 SNNKIQALKSEELDIFANSSLKKLELSSNQIK 184
Score = 51.2 bits (123), Expect = 2e-08
Identities = 21/89 (23%), Positives = 38/89 (42%), Gaps = 3/89 (3%)
Query: 8 LSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLK 67
+ + L +T + L R+ F L +L + N + +E + LP L LNL+
Sbjct: 24 PTNITVLNLTH-NQLRRLPAANFTRYSQLTSLDVGFN-TISKLEPELCQKLPMLKVLNLQ 81
Query: 68 ENAFTSFSESMLAW-PELRTIDIAENPIE 95
N + S+ A+ L + + N I+
Sbjct: 82 HNELSQLSDKTFAFCTNLTELHLMSNSIQ 110
Score = 50.0 bits (120), Expect = 4e-08
Identities = 17/90 (18%), Positives = 35/90 (38%), Gaps = 3/90 (3%)
Query: 6 KGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLN 65
S L L++ + ++++ L+ L L N +L + + NL L+
Sbjct: 46 TRYSQLTSLDVGF-NTISKLEPELCQKLPMLKVLNLQHN-ELSQLSDKTFAFCTNLTELH 103
Query: 66 LKENAFTSFSESMLAW-PELRTIDIAENPI 94
L N+ + L T+D++ N +
Sbjct: 104 LMSNSIQKIKNNPFVKQKNLITLDLSHNGL 133
Score = 45.8 bits (109), Expect = 1e-06
Identities = 19/90 (21%), Positives = 40/90 (44%), Gaps = 2/90 (2%)
Query: 7 GLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNL 66
S L L +T + ++++ AF+ +LE L L N + + GL N++ + L
Sbjct: 379 AHSPLHILNLTK-NKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYL 437
Query: 67 KENAFTSFSESMLAW-PELRTIDIAENPIE 95
N + + + A P L+ + + ++
Sbjct: 438 SYNKYLQLTRNSFALVPSLQRLMLRRVALK 467
Score = 45.8 bits (109), Expect = 1e-06
Identities = 17/93 (18%), Positives = 37/93 (39%), Gaps = 4/93 (4%)
Query: 6 KGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLN 65
L +L+ L++ + + N+ + L+ N K + ++ +P+L L
Sbjct: 402 SWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYN-KYLQLTRNSFALVPSLQRLM 460
Query: 66 LKENAFTSFSESMLAW---PELRTIDIAENPIE 95
L+ A + S + L +D++ N I
Sbjct: 461 LRRVALKNVDSSPSPFQPLRNLTILDLSNNNIA 493
Score = 43.1 bits (102), Expect = 1e-05
Identities = 16/99 (16%), Positives = 37/99 (37%), Gaps = 10/99 (10%)
Query: 6 KGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKN--------PKLKIIEEDALVG 57
L L+ + +N+ + + N+ L L ++ L I++ +
Sbjct: 269 AWLPQLEYFFLEY-NNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQW 327
Query: 58 LPNLYHLNLKENAFTSFSESMLAW-PELRTIDIAENPIE 95
L L HLN+++N +M L+ + ++ +
Sbjct: 328 LKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTS 366
Score = 40.8 bits (96), Expect = 5e-05
Identities = 19/92 (20%), Positives = 38/92 (41%), Gaps = 6/92 (6%)
Query: 8 LSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLK 67
L + ++L ++ +F LE L + N + I+ + GL NL +L+L
Sbjct: 303 LKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDN-DIPGIKSNMFTGLINLKYLSLS 361
Query: 68 ENAFTSFSE-----SMLAWPELRTIDIAENPI 94
+ + + LA L +++ +N I
Sbjct: 362 NSFTSLRTLTNETFVSLAHSPLHILNLTKNKI 393
Score = 40.4 bits (95), Expect = 9e-05
Identities = 18/89 (20%), Positives = 35/89 (39%), Gaps = 5/89 (5%)
Query: 7 GLSYLKRLEITGASNLTRVRKGAFA--DNLNLETLTLNKNPKLKIIEEDALVGLPNLYHL 64
+ ++ L ++ S L+ F NL L L+ N L ++ D+ LP L +
Sbjct: 220 ANTSIRNLSLSN-SQLSTTSNTTFLGLKWTNLTMLDLSYN-NLNVVGNDSFAWLPQLEYF 277
Query: 65 NLKENAFTSFSESMLAW-PELRTIDIAEN 92
L+ N L +R +++ +
Sbjct: 278 FLEYNNIQHLFSHSLHGLFNVRYLNLKRS 306
Score = 39.6 bits (93), Expect = 2e-04
Identities = 22/100 (22%), Positives = 35/100 (35%), Gaps = 13/100 (13%)
Query: 7 GLSYLKRLEITGASNLTRVRK--GAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHL 64
+ L+RL + L V F NL L L+ N + I +D L GL L L
Sbjct: 452 LVPSLQRLMLRR-VALKNVDSSPSPFQPLRNLTILDLSNN-NIANINDDMLEGLEKLEIL 509
Query: 65 NLKENAFTSFSESMLAW---------PELRTIDIAENPIE 95
+L+ N + L +++ N +
Sbjct: 510 DLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFD 549
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto;
TLR2, PAM3CSK4, lipopeptide, innate immunity,
cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A
{Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A*
2z7x_A*
Length = 549
Score = 55.1 bits (133), Expect = 6e-10
Identities = 21/91 (23%), Positives = 40/91 (43%), Gaps = 8/91 (8%)
Query: 35 NLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESMLAW-PELRTIDIAENP 93
L+ L +++N KLK + + +L P L + + N S + + L+ I + NP
Sbjct: 452 RLQELYISRN-KLKTLPDASL--FPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNP 508
Query: 94 IECGCN-ILWLREML---VRRNTSAVFCNSP 120
+C C I +L L ++ + C+
Sbjct: 509 WDCSCPRIDYLSRWLNKNSQKEQGSAKCSGS 539
Score = 51.6 bits (124), Expect = 1e-08
Identities = 16/91 (17%), Positives = 37/91 (40%), Gaps = 2/91 (2%)
Query: 7 GLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNL 66
L+ L+ L I + +R+ FA +L L + L+ + +L + +++HL L
Sbjct: 121 NLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKAL-SLRNYQSQSLKSIRDIHHLTL 179
Query: 67 KENAFTSFSESMLAW-PELRTIDIAENPIEC 96
+ E +R +++ + +
Sbjct: 180 HLSESAFLLEIFADILSSVRYLELRDTNLAR 210
Score = 49.3 bits (118), Expect = 6e-08
Identities = 19/92 (20%), Positives = 35/92 (38%), Gaps = 3/92 (3%)
Query: 7 GLSYLKRLEITGASNLTRVRKGAFADNL-NLETLTLNKNPKLKIIEEDALVGLPNLYHLN 65
LS LK L + G + + + NL NL+TL + I GL +L L
Sbjct: 96 PLSSLKYLNLMG-NPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELE 154
Query: 66 LKENAFTSFSESMLAW-PELRTIDIAENPIEC 96
+K + ++ L ++ + + +
Sbjct: 155 IKALSLRNYQSQSLKSIRDIHHLTLHLSESAF 186
Score = 49.0 bits (117), Expect = 9e-08
Identities = 22/75 (29%), Positives = 36/75 (48%), Gaps = 2/75 (2%)
Query: 21 NLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESMLA 80
+T + G NL+ L L + ++ IE DA L +L HL+L +N +S S S
Sbjct: 37 KITYIGHGDLRACANLQVLILKSS-RINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFG 95
Query: 81 W-PELRTIDIAENPI 94
L+ +++ NP
Sbjct: 96 PLSSLKYLNLMGNPY 110
Score = 46.6 bits (111), Expect = 5e-07
Identities = 19/92 (20%), Positives = 39/92 (42%), Gaps = 6/92 (6%)
Query: 8 LSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLK 67
++RL I L ++ ++ +T+ + K+ ++ L +L L+L
Sbjct: 285 TVTIRRLHIPQ-FYLFYDLSTVYSLLEKVKRITVENS-KVFLVPCSFSQHLKSLEFLDLS 342
Query: 68 ENAFTSF----SESMLAWPELRTIDIAENPIE 95
EN S AWP L+T+ +++N +
Sbjct: 343 ENLMVEEYLKNSACKGAWPSLQTLVLSQNHLR 374
Score = 40.5 bits (95), Expect = 7e-05
Identities = 18/92 (19%), Positives = 34/92 (36%), Gaps = 3/92 (3%)
Query: 6 KGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLN 65
L L+ L+++ ++L+ + F +L+ L L NP + L NL L
Sbjct: 71 YSLGSLEHLDLSD-NHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLR 129
Query: 66 L-KENAFTSFSESMLAW-PELRTIDIAENPIE 95
+ F+ A L ++I +
Sbjct: 130 IGNVETFSEIRRIDFAGLTSLNELEIKALSLR 161
Score = 40.5 bits (95), Expect = 8e-05
Identities = 18/94 (19%), Positives = 41/94 (43%), Gaps = 5/94 (5%)
Query: 6 KGLSYLKRLEITG--ASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALV--GLPNL 61
+ L L+ L+++ +L+TL L++N L+ +++ + L NL
Sbjct: 331 QHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQN-HLRSMQKTGEILLTLKNL 389
Query: 62 YHLNLKENAFTSFSESMLAWPELRTIDIAENPIE 95
L++ N F +S ++R ++++ I
Sbjct: 390 TSLDISRNTFHPMPDSCQWPEKMRFLNLSSTGIR 423
Score = 40.1 bits (94), Expect = 1e-04
Identities = 17/74 (22%), Positives = 32/74 (43%), Gaps = 2/74 (2%)
Query: 6 KGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLN 65
GL+ L LEI +L + + ++ LTL+ + + + E L ++ +L
Sbjct: 145 AGLTSLNELEIKA-LSLRNYQSQSLKSIRDIHHLTLHLS-ESAFLLEIFADILSSVRYLE 202
Query: 66 LKENAFTSFSESML 79
L++ F S L
Sbjct: 203 LRDTNLARFQFSPL 216
Score = 29.3 bits (66), Expect = 0.50
Identities = 7/68 (10%), Positives = 23/68 (33%), Gaps = 6/68 (8%)
Query: 33 NLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKE-----NAFTSFSESMLAW-PELRT 86
+ + TLN E D + L + + ++ ++ + +++
Sbjct: 255 EVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKR 314
Query: 87 IDIAENPI 94
I + + +
Sbjct: 315 ITVENSKV 322
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil,
helix-loop-helix, leucine-rich repeat, protein; HET: NAG
MAN; 2.70A {Anopheles gambiae}
Length = 597
Score = 54.2 bits (130), Expect = 2e-09
Identities = 17/91 (18%), Positives = 37/91 (40%), Gaps = 3/91 (3%)
Query: 6 KGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLN 65
++ L + + + AFA ++ L + N ++ + +P L L
Sbjct: 72 DSFRQVELLNLND-LQIEEIDTYAFAYAHTIQKLYMGFN-AIRYLPPHVFQNVPLLTVLV 129
Query: 66 LKENAFTSFSESMLAW-PELRTIDIAENPIE 95
L+ N +S + P+L T+ ++ N +E
Sbjct: 130 LERNDLSSLPRGIFHNTPKLTTLSMSNNNLE 160
Score = 52.6 bits (126), Expect = 6e-09
Identities = 22/90 (24%), Positives = 44/90 (48%), Gaps = 4/90 (4%)
Query: 6 KGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLN 65
+ + L L + ++L+ + +G F + L TL+++ N L+ IE+D +L +L
Sbjct: 120 QNVPLLTVLVLER-NDLSSLPRGIFHNTPKLTTLSMSNN-NLERIEDDTFQATTSLQNLQ 177
Query: 66 LKENAFTSFSESMLAWPELRTIDIAENPIE 95
L N T S++ P L +++ N +
Sbjct: 178 LSSNRLTHVDLSLI--PSLFHANVSYNLLS 205
Score = 51.1 bits (122), Expect = 2e-08
Identities = 15/89 (16%), Positives = 31/89 (34%), Gaps = 3/89 (3%)
Query: 8 LSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLK 67
L+ K + S + ++ +E L LN +++ I+ A + L +
Sbjct: 50 LNNQKIVTFKN-STMRKLPAALLDSFRQVELLNLNDL-QIEEIDTYAFAYAHTIQKLYMG 107
Query: 68 ENAFTSFSESMLAW-PELRTIDIAENPIE 95
NA + P L + + N +
Sbjct: 108 FNAIRYLPPHVFQNVPLLTVLVLERNDLS 136
Score = 48.8 bits (116), Expect = 1e-07
Identities = 13/68 (19%), Positives = 27/68 (39%), Gaps = 1/68 (1%)
Query: 28 GAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESMLAWPELRTI 87
+ L + L+ N +L+ I V + L L + N + + P L+ +
Sbjct: 248 AWLLNYPGLVEVDLSYN-ELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVL 306
Query: 88 DIAENPIE 95
D++ N +
Sbjct: 307 DLSHNHLL 314
Score = 47.6 bits (113), Expect = 3e-07
Identities = 21/156 (13%), Positives = 47/156 (30%), Gaps = 25/156 (16%)
Query: 7 GLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNL 66
L ++++ + L ++ F LE L ++ N +L + +P L L+L
Sbjct: 252 NYPGLVEVDLSY-NELEKIMYHPFVKMQRLERLYISNN-RLVALNL-YGQPIPTLKVLDL 308
Query: 67 KENAFTSFSESML---------------------AWPELRTIDIAENPIECGCNILWLRE 105
N + L+ + ++ N +C R
Sbjct: 309 SHNHLLHVERNQPQFDRLENLYLDHNSIVTLKLSTHHTLKNLTLSHNDWDCNSLRALFRN 368
Query: 106 MLVRR-NTSAVFCNSPAPLKYKSLISLSAEDLGSRV 140
+ + + C L++ S + R+
Sbjct: 369 VARPAVDDADQHCKIDYQLEHGLCCKESDKPYLDRL 404
Score = 43.8 bits (103), Expect = 6e-06
Identities = 19/89 (21%), Positives = 39/89 (43%), Gaps = 9/89 (10%)
Query: 7 GLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNL 66
L L ++ +NL R+ F +L+ L L+ N +L ++ + P+L+H N+
Sbjct: 145 NTPKLTTLSMSN-NNLERIEDDTFQATTSLQNLQLSSN-RLTHVDLSLI---PSLFHANV 199
Query: 67 KENAFTSFSESMLAWPELRTIDIAENPIE 95
N ++ + + +D + N I
Sbjct: 200 SYNLLSTLAIP----IAVEELDASHNSIN 224
Score = 31.1 bits (70), Expect = 0.11
Identities = 11/82 (13%), Positives = 30/82 (36%), Gaps = 6/82 (7%)
Query: 20 SNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVG-----LPNLYHLNLKENAFTSF 74
N+ + + NL+ + + + + +D G L N + K +
Sbjct: 7 YNVKPRQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKL 66
Query: 75 SESMLAW-PELRTIDIAENPIE 95
++L ++ +++ + IE
Sbjct: 67 PAALLDSFRQVELLNLNDLQIE 88
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A
{Anopheles gambiae}
Length = 390
Score = 53.9 bits (130), Expect = 2e-09
Identities = 22/90 (24%), Positives = 44/90 (48%), Gaps = 4/90 (4%)
Query: 6 KGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLN 65
+ + L L + ++L+ + +G F + L TL+++ N L+ IE+D +L +L
Sbjct: 114 QNVPLLTVLVLER-NDLSSLPRGIFHNTPKLTTLSMSNN-NLERIEDDTFQATTSLQNLQ 171
Query: 66 LKENAFTSFSESMLAWPELRTIDIAENPIE 95
L N T S++ P L +++ N +
Sbjct: 172 LSSNRLTHVDLSLI--PSLFHANVSYNLLS 199
Score = 53.9 bits (130), Expect = 2e-09
Identities = 17/91 (18%), Positives = 37/91 (40%), Gaps = 3/91 (3%)
Query: 6 KGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLN 65
++ L + + + AFA ++ L + N ++ + +P L L
Sbjct: 66 DSFRQVELLNLND-LQIEEIDTYAFAYAHTIQKLYMGFN-AIRYLPPHVFQNVPLLTVLV 123
Query: 66 LKENAFTSFSESMLAW-PELRTIDIAENPIE 95
L+ N +S + P+L T+ ++ N +E
Sbjct: 124 LERNDLSSLPRGIFHNTPKLTTLSMSNNNLE 154
Score = 52.7 bits (127), Expect = 4e-09
Identities = 15/89 (16%), Positives = 31/89 (34%), Gaps = 3/89 (3%)
Query: 8 LSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLK 67
L+ K + S + ++ +E L LN +++ I+ A + L +
Sbjct: 44 LNNQKIVTFKN-STMRKLPAALLDSFRQVELLNLNDL-QIEEIDTYAFAYAHTIQKLYMG 101
Query: 68 ENAFTSFSESMLAW-PELRTIDIAENPIE 95
NA + P L + + N +
Sbjct: 102 FNAIRYLPPHVFQNVPLLTVLVLERNDLS 130
Score = 49.7 bits (119), Expect = 4e-08
Identities = 13/68 (19%), Positives = 27/68 (39%), Gaps = 1/68 (1%)
Query: 28 GAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESMLAWPELRTI 87
+ L + L+ N +L+ I V + L L + N + + P L+ +
Sbjct: 242 AWLLNYPGLVEVDLSYN-ELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVL 300
Query: 88 DIAENPIE 95
D++ N +
Sbjct: 301 DLSHNHLL 308
Score = 48.1 bits (115), Expect = 2e-07
Identities = 19/141 (13%), Positives = 42/141 (29%), Gaps = 25/141 (17%)
Query: 6 KGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLN 65
L ++++ + L ++ F LE L ++ N +L + +P L L+
Sbjct: 245 LNYPGLVEVDLSY-NELEKIMYHPFVKMQRLERLYISNN-RLVALNL-YGQPIPTLKVLD 301
Query: 66 LKENAFTSFSESML---------------------AWPELRTIDIAENPIECGCNILWLR 104
L N + L+ + ++ N +C R
Sbjct: 302 LSHNHLLHVERNQPQFDRLENLYLDHNSIVTLKLSTHHTLKNLTLSHNDWDCNSLRALFR 361
Query: 105 EML-VRRNTSAVFCNSPAPLK 124
+ + + C L+
Sbjct: 362 NVARPAVDDADQHCKIDYQLE 382
Score = 44.3 bits (105), Expect = 3e-06
Identities = 19/89 (21%), Positives = 39/89 (43%), Gaps = 9/89 (10%)
Query: 6 KGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLN 65
L L ++ +NL R+ F +L+ L L+ N +L ++ + P+L+H N
Sbjct: 138 HNTPKLTTLSMSN-NNLERIEDDTFQATTSLQNLQLSSN-RLTHVDLSLI---PSLFHAN 192
Query: 66 LKENAFTSFSESMLAWPELRTIDIAENPI 94
+ N ++ + + +D + N I
Sbjct: 193 VSYNLLSTLAIP----IAVEELDASHNSI 217
Score = 38.9 bits (91), Expect = 3e-04
Identities = 19/123 (15%), Positives = 37/123 (30%), Gaps = 28/123 (22%)
Query: 6 KGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLN 65
+ L+RL I+ + L + L+ L L+ N L +E + L +L
Sbjct: 269 VKMQRLERLYISN-NRLVALN-LYGQPIPTLKVLDLSHN-HLLHVERNQP-QFDRLENLY 324
Query: 66 LKENAFTSFSESMLAWPELRTIDIAENP----------------------IECGCNILWL 103
L N+ + S L+ + ++ N C +
Sbjct: 325 LDHNSIVTLKLSTH--HTLKNLTLSHNDWDCNSLRALFRNVARPAVDDADQHCKIDYQLE 382
Query: 104 REM 106
+
Sbjct: 383 HGL 385
Score = 31.6 bits (72), Expect = 0.078
Identities = 10/75 (13%), Positives = 27/75 (36%), Gaps = 6/75 (8%)
Query: 27 KGAFADNLNLETLTLNKNPKLKIIEEDALVG-----LPNLYHLNLKENAFTSFSESMLAW 81
+ NL+ + + + + +D G L N + K + ++L
Sbjct: 8 PEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDS 67
Query: 82 -PELRTIDIAENPIE 95
++ +++ + IE
Sbjct: 68 FRQVELLNLNDLQIE 82
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS,
immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Length = 570
Score = 53.6 bits (129), Expect = 2e-09
Identities = 20/90 (22%), Positives = 37/90 (41%), Gaps = 3/90 (3%)
Query: 6 KGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLN 65
L+ L+++ + + GA+ +L TL L N ++ + A GL +L L
Sbjct: 49 FSFPELQVLDLSR-CEIQTIEDGAYQSLSHLSTLILTGN-PIQSLALGAFSGLSSLQKLV 106
Query: 66 LKENAFTSFSESMLAW-PELRTIDIAENPI 94
E S + L+ +++A N I
Sbjct: 107 AVETNLASLENFPIGHLKTLKELNVAHNLI 136
Score = 52.0 bits (125), Expect = 7e-09
Identities = 26/128 (20%), Positives = 40/128 (31%), Gaps = 27/128 (21%)
Query: 6 KGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLN 65
L L L+I+ ++ G F +LE L + N + D L NL L+
Sbjct: 418 LSLRNLIYLDISH-THTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLD 476
Query: 66 LKENAFTSFSESMLAW-------------------------PELRTIDIAENPIECGCN- 99
L + S + L+ I + NP +C C
Sbjct: 477 LSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 536
Query: 100 ILWLREML 107
I +L L
Sbjct: 537 IDYLSRWL 544
Score = 48.6 bits (116), Expect = 1e-07
Identities = 18/88 (20%), Positives = 37/88 (42%), Gaps = 3/88 (3%)
Query: 9 SYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKE 68
K L+++ + L + +F L+ L L++ +++ IE+ A L +L L L
Sbjct: 28 FSTKNLDLSF-NPLRHLGSYSFFSFPELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILTG 85
Query: 69 NAFTSFSESMLAW-PELRTIDIAENPIE 95
N S + + L+ + E +
Sbjct: 86 NPIQSLALGAFSGLSSLQKLVAVETNLA 113
Score = 42.4 bits (100), Expect = 2e-05
Identities = 22/95 (23%), Positives = 36/95 (37%), Gaps = 6/95 (6%)
Query: 7 GLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNL 66
GLS L++L +NL + L+ L + N + L NL HL+L
Sbjct: 98 GLSSLQKLVAVE-TNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDL 156
Query: 67 KENAFTSFSESMLAW-----PELRTIDIAENPIEC 96
N S + L ++D++ NP+
Sbjct: 157 SSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNF 191
Score = 39.7 bits (93), Expect = 1e-04
Identities = 15/69 (21%), Positives = 30/69 (43%), Gaps = 1/69 (1%)
Query: 28 GAFADNLNLETLTLNKNPKLKI-IEEDALVGLPNLYHLNLKENAFTSFSESMLAWPELRT 86
+ D +LE L L++N + G +L +L+L N + S + L +L
Sbjct: 341 FSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEH 400
Query: 87 IDIAENPIE 95
+D + ++
Sbjct: 401 LDFQHSNLK 409
Score = 38.2 bits (89), Expect = 5e-04
Identities = 16/90 (17%), Positives = 33/90 (36%), Gaps = 3/90 (3%)
Query: 6 KGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLN 65
G + LK L+++ + + + F LE L + ++ E + L NL +L+
Sbjct: 370 FGTTSLKYLDLSF-NGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLD 427
Query: 66 LKENAFTSFSESMLAW-PELRTIDIAENPI 94
+ + L + +A N
Sbjct: 428 ISHTHTRVAFNGIFNGLSSLEVLKMAGNSF 457
Score = 35.5 bits (82), Expect = 0.004
Identities = 13/55 (23%), Positives = 21/55 (38%), Gaps = 1/55 (1%)
Query: 21 NLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFS 75
+ ++ GAF + L LTL N + + + GL L L F +
Sbjct: 188 PMNFIQPGAF-KEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEG 241
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR,
immune system; 2.50A {Eptatretus burgeri}
Length = 270
Score = 53.1 bits (128), Expect = 2e-09
Identities = 35/137 (25%), Positives = 62/137 (45%), Gaps = 8/137 (5%)
Query: 7 GLSYLKRLEITGASNLTRVRKGAFADNL-NLETLTLNKNPKLKIIEEDALVGLPNLYHLN 65
L+ L L + + L + KG F D L +L+ L L N +LK + E A L L L
Sbjct: 131 SLTKLTYLSLGY-NELQSLPKGVF-DKLTSLKELRLYNN-QLKRVPEGAFDKLTELKTLK 187
Query: 66 LKENAFTSFSESMLAW-PELRTIDIAENPIECGCN-ILWLREMLVRRNTSAVF--CNSPA 121
L N E +L+ + + ENP +C CN I+++ + L ++ + +
Sbjct: 188 LDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCTCNGIIYMAKWLKKKADEGLGGVDTAGC 247
Query: 122 PLKYKSLISLSAEDLGS 138
K+++ ++ +D S
Sbjct: 248 EKGGKAVLEITEKDAAS 264
Score = 39.2 bits (92), Expect = 2e-04
Identities = 17/76 (22%), Positives = 29/76 (38%), Gaps = 2/76 (2%)
Query: 21 NLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESMLA 80
L+ + AF L L LN N KL+ + L NL L + +N + +
Sbjct: 48 KLSSLPSKAFHRLTKLRLLYLNDN-KLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFD 106
Query: 81 WP-ELRTIDIAENPIE 95
L + + N ++
Sbjct: 107 QLVNLAELRLDRNQLK 122
Score = 38.8 bits (91), Expect = 3e-04
Identities = 21/68 (30%), Positives = 31/68 (45%), Gaps = 4/68 (5%)
Query: 7 GLSYLKRLEITGASN-LTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLN 65
L L+ L +T N L + G F +NL L L++N +LK + L L +L+
Sbjct: 83 ELKNLETLWVT--DNKLQALPIGVFDQLVNLAELRLDRN-QLKSLPPRVFDSLTKLTYLS 139
Query: 66 LKENAFTS 73
L N S
Sbjct: 140 LGYNELQS 147
Score = 38.0 bits (89), Expect = 5e-04
Identities = 21/70 (30%), Positives = 30/70 (42%), Gaps = 2/70 (2%)
Query: 7 GLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNL 66
L+ L+ L + + L + G F + NLETL + N KL+ + L NL L L
Sbjct: 59 RLTKLRLLYLND-NKLQTLPAGIFKELKNLETLWVTDN-KLQALPIGVFDQLVNLAELRL 116
Query: 67 KENAFTSFSE 76
N S
Sbjct: 117 DRNQLKSLPP 126
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein;
HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A*
1xcd_A*
Length = 330
Score = 52.7 bits (127), Expect = 4e-09
Identities = 15/75 (20%), Positives = 30/75 (40%), Gaps = 1/75 (1%)
Query: 21 NLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESMLA 80
+T+V + NL L L+ N + ++ +L P+L L+L N +
Sbjct: 203 KITKVDAASLKGLNNLAKLGLSFN-SISAVDNGSLANTPHLRELHLNNNKLVKVPGGLAD 261
Query: 81 WPELRTIDIAENPIE 95
++ + + N I
Sbjct: 262 HKYIQVVYLHNNNIS 276
Score = 49.2 bits (118), Expect = 7e-08
Identities = 23/75 (30%), Positives = 32/75 (42%), Gaps = 3/75 (4%)
Query: 21 NLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESMLA 80
+T ++ G F + NL TL L N K+ I A L L L L +N E M
Sbjct: 63 KITEIKDGDFKNLKNLHTLILINN-KISKISPGAFAPLVKLERLYLSKNQLKELPEKMP- 120
Query: 81 WPELRTIDIAENPIE 95
L+ + + EN I
Sbjct: 121 -KTLQELRVHENEIT 134
Score = 49.2 bits (118), Expect = 7e-08
Identities = 19/76 (25%), Positives = 33/76 (43%), Gaps = 3/76 (3%)
Query: 21 NLTRVRKGAFADNLNLETLTLNKNP-KLKIIEEDALVGLPNLYHLNLKENAFTSFSESML 79
+T+VRK F + + L NP K IE A G+ L ++ + + T+ + +
Sbjct: 132 EITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLP 191
Query: 80 AWPELRTIDIAENPIE 95
P L + + N I
Sbjct: 192 --PSLTELHLDGNKIT 205
Score = 44.2 bits (105), Expect = 4e-06
Identities = 25/91 (27%), Positives = 45/91 (49%), Gaps = 6/91 (6%)
Query: 6 KGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLN 65
K L L L + + ++++ GAFA + LE L L+KN +LK + E L L
Sbjct: 73 KNLKNLHTLILIN-NKISKISPGAFAPLVKLERLYLSKN-QLKELPEKMP---KTLQELR 127
Query: 66 LKENAFTSFSESMLAW-PELRTIDIAENPIE 95
+ EN T +S+ ++ +++ NP++
Sbjct: 128 VHENEITKVRKSVFNGLNQMIVVELGTNPLK 158
Score = 40.4 bits (95), Expect = 8e-05
Identities = 19/94 (20%), Positives = 36/94 (38%), Gaps = 10/94 (10%)
Query: 7 GLSYLKRLEITGASN---LTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYH 63
GL+ + +E+ +N + + GAF L + + + I + P+L
Sbjct: 143 GLNQMIVVEL--GTNPLKSSGIENGAFQGMKKLSYIRIADT-NITTIPQGLP---PSLTE 196
Query: 64 LNLKENAFTSFSESMLAW-PELRTIDIAENPIEC 96
L+L N T + L L + ++ N I
Sbjct: 197 LHLDGNKITKVDAASLKGLNNLAKLGLSFNSISA 230
Score = 35.4 bits (82), Expect = 0.003
Identities = 8/70 (11%), Positives = 20/70 (28%), Gaps = 6/70 (8%)
Query: 6 KGLSYLKRL-----EITGASNLTRVRKGAFADNLNLETLTLNKNP-KLKIIEEDALVGLP 59
Y++ + I+ + G + ++L NP + I+ +
Sbjct: 260 ADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVY 319
Query: 60 NLYHLNLKEN 69
+ L
Sbjct: 320 VRAAVQLGNY 329
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein,
signaling; HET: NAG FLC; 3.40A {Bos taurus}
Length = 332
Score = 51.6 bits (124), Expect = 1e-08
Identities = 20/112 (17%), Positives = 36/112 (32%), Gaps = 15/112 (13%)
Query: 21 NLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESMLA 80
+ + L L L N ++++IE +L LP L L+L N + +
Sbjct: 204 KIQAIELEDLLRYSKLYRLGLGHN-QIRMIENGSLSFLPTLRELHLDNNKLSRVPAGLPD 262
Query: 81 WPELRTIDIAENPIECGCNILWLREMLVRRNTSAVFCNSPAPLKYKSLISLS 132
L+ + + N I + FC +K +S
Sbjct: 263 LKLLQVVYLHTNNI--------------TKVGVNDFCPVGFGVKRAYYNGIS 300
Score = 50.0 bits (120), Expect = 4e-08
Identities = 19/74 (25%), Positives = 31/74 (41%), Gaps = 3/74 (4%)
Query: 21 NLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESMLA 80
+++ +RK F +L L L N K+ I E A L L L + +N ++
Sbjct: 65 DISELRKDDFKGLQHLYALVLVNN-KISKIHEKAFSPLRKLQKLYISKNHLVEIPPNLP- 122
Query: 81 WPELRTIDIAENPI 94
L + I +N I
Sbjct: 123 -SSLVELRIHDNRI 135
Score = 46.5 bits (111), Expect = 6e-07
Identities = 16/91 (17%), Positives = 39/91 (42%), Gaps = 7/91 (7%)
Query: 6 KGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLN 65
L L++L I+ ++L + + +L L ++ N +++ + + GL N+ +
Sbjct: 99 SPLRKLQKLYISK-NHLVEIPPNLPS---SLVELRIHDN-RIRKVPKGVFSGLRNMNCIE 153
Query: 66 LKENAFTS--FSESMLAWPELRTIDIAENPI 94
+ N + F +L + I+E +
Sbjct: 154 MGGNPLENSGFEPGAFDGLKLNYLRISEAKL 184
Score = 37.3 bits (87), Expect = 8e-04
Identities = 23/95 (24%), Positives = 37/95 (38%), Gaps = 11/95 (11%)
Query: 6 KGLSYLKRLEITGASN---LTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLY 62
GL + +E+ N + GAF D L L L +++ KL I +D L
Sbjct: 144 SGLRNMNCIEM--GGNPLENSGFEPGAF-DGLKLNYLRISEA-KLTGIPKDLP---ETLN 196
Query: 63 HLNLKENAFTSFSESMLA-WPELRTIDIAENPIEC 96
L+L N + L + +L + + N I
Sbjct: 197 ELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRM 231
Score = 36.5 bits (85), Expect = 0.002
Identities = 9/71 (12%), Positives = 22/71 (30%), Gaps = 8/71 (11%)
Query: 6 KGLSYLKRLEITGASNLTRVRKGAFAD------NLNLETLTLNKNP-KLKIIEEDALVGL 58
L L+ + + +N+T+V F ++L NP ++ +
Sbjct: 261 PDLKLLQVVYLHT-NNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCV 319
Query: 59 PNLYHLNLKEN 69
+ +
Sbjct: 320 TDRLAIQFGNY 330
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding;
HET: NAG; 2.00A {Anopheles gambiae}
Length = 317
Score = 51.1 bits (123), Expect = 1e-08
Identities = 19/123 (15%), Positives = 38/123 (30%), Gaps = 22/123 (17%)
Query: 6 KGLSYLKRLEITGASNLTRVRKGAFADNL-NLETLTLNKN-----------PKLKIIE-- 51
S ++ L++ + + V A + LE L L N KLK ++
Sbjct: 141 GCRSRVQYLDLKL-NEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLS 199
Query: 52 -------EDALVGLPNLYHLNLKENAFTSFSESMLAWPELRTIDIAENPIECGCNILWLR 104
+ ++L+ N +++ L D+ N CG +
Sbjct: 200 SNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFS 259
Query: 105 EML 107
+
Sbjct: 260 KNQ 262
Score = 47.7 bits (114), Expect = 2e-07
Identities = 21/88 (23%), Positives = 36/88 (40%), Gaps = 3/88 (3%)
Query: 8 LSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLK 67
+ K ++T S+L + N++ L L+ N L I L L LNL
Sbjct: 9 GNRYKIEKVTD-SSLKQALASLRQSAWNVKELDLSGN-PLSQISAADLAPFTKLELLNLS 66
Query: 68 ENAFTSFSESMLAWPELRTIDIAENPIE 95
N + + + LRT+D+ N ++
Sbjct: 67 SNVLYETLD-LESLSTLRTLDLNNNYVQ 93
Score = 41.9 bits (99), Expect = 2e-05
Identities = 22/90 (24%), Positives = 36/90 (40%), Gaps = 8/90 (8%)
Query: 6 KGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLN 65
+ +K L+++G + L+++ A LE L L+ N + E L L L L+
Sbjct: 31 QSAWNVKELDLSG-NPLSQISAADLAPFTKLELLNLSSN---VLYETLDLESLSTLRTLD 86
Query: 66 LKENAFTSFSESMLAWPELRTIDIAENPIE 95
L N P + T+ A N I
Sbjct: 87 LNNNYVQELLVG----PSIETLHAANNNIS 112
Score = 41.9 bits (99), Expect = 2e-05
Identities = 16/76 (21%), Positives = 33/76 (43%), Gaps = 3/76 (3%)
Query: 21 NLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVG-LPNLYHLNLKENAFTSFSESML 79
+T +R ++ L L N ++ + L L HLNL+ N ++
Sbjct: 131 KITMLRDLDEGCRSRVQYLDLKLN-EIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVV 189
Query: 80 AWPELRTIDIAENPIE 95
+ +L+T+D++ N +
Sbjct: 190 -FAKLKTLDLSSNKLA 204
Score = 32.3 bits (74), Expect = 0.045
Identities = 10/62 (16%), Positives = 22/62 (35%), Gaps = 5/62 (8%)
Query: 35 NLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESMLA-WPELRTIDIAENP 93
++ETL N + + ++ L N T + ++ +D+ N
Sbjct: 100 SIETLHAANN-NISRVSCSRG---QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNE 155
Query: 94 IE 95
I+
Sbjct: 156 ID 157
>2wfh_A SLIT homolog 2 protein C-product; developmental protein,
neurogenesis, splicing, glycoprotein, leucine-rich
repeat, disulfide bond, differentiation; 1.80A {Homo
sapiens}
Length = 193
Score = 50.0 bits (120), Expect = 2e-08
Identities = 35/145 (24%), Positives = 63/145 (43%), Gaps = 23/145 (15%)
Query: 3 KEVKGLSYLKRLEITGASN-LTRVRKGAFADNL-NLETLTLNKNPKLKIIEEDALVGLPN 60
KE+ +L +++ ++N ++ + +F N+ L TL L+ N +L+ I GL +
Sbjct: 48 KELSNYKHLTLIDL--SNNRISTLSNQSF-SNMTQLLTLILSYN-RLRCIPPRTFDGLKS 103
Query: 61 LYHLNLKEN--------AFTSFSESMLAWPELRTIDIAENPIECGCNILWLREMLVR--R 110
L L+L N AF S L + I NP+ C CN+ WL + + +
Sbjct: 104 LRLLSLHGNDISVVPEGAFNDLSA-------LSHLAIGANPLYCDCNMQWLSDWVKSEYK 156
Query: 111 NTSAVFCNSPAPLKYKSLISLSAED 135
C P + K L++ ++
Sbjct: 157 EPGIARCAGPGEMADKLLLTTPSKK 181
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix,
leucine-rich repeat, protein; HET: NAG MAN; 2.70A
{Anopheles gambiae}
Length = 487
Score = 49.1 bits (117), Expect = 7e-08
Identities = 21/148 (14%), Positives = 44/148 (29%), Gaps = 25/148 (16%)
Query: 6 KGLSYLKRLEITGASNLTRVRKGAFADNL-NLETLTLNKN-----------PKLKIIE-- 51
S ++ L++ + + V A + LE L L N KLK ++
Sbjct: 141 GCRSRVQYLDLKL-NEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLS 199
Query: 52 -------EDALVGLPNLYHLNLKENAFTSFSESMLAWPELRTIDIAENPIECGCNILWLR 104
+ ++L+ N +++ L D+ N CG +
Sbjct: 200 SNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFS 259
Query: 105 EMLVRRNTSAVFCNSPAPLKYKSLISLS 132
+ V + L ++ +
Sbjct: 260 KNQ---RVQTVAKQTVKKLTGQNEEECT 284
Score = 45.2 bits (107), Expect = 2e-06
Identities = 21/88 (23%), Positives = 36/88 (40%), Gaps = 3/88 (3%)
Query: 8 LSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLK 67
+ K ++T S+L + N++ L L+ N L I L L LNL
Sbjct: 9 GNRYKIEKVTD-SSLKQALASLRQSAWNVKELDLSGN-PLSQISAADLAPFTKLELLNLS 66
Query: 68 ENAFTSFSESMLAWPELRTIDIAENPIE 95
N + + + LRT+D+ N ++
Sbjct: 67 SNVLYETLD-LESLSTLRTLDLNNNYVQ 93
Score = 42.5 bits (100), Expect = 2e-05
Identities = 22/90 (24%), Positives = 36/90 (40%), Gaps = 8/90 (8%)
Query: 6 KGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLN 65
+ +K L+++G + L+++ A LE L L+ N + E L L L L+
Sbjct: 31 QSAWNVKELDLSG-NPLSQISAADLAPFTKLELLNLSSN---VLYETLDLESLSTLRTLD 86
Query: 66 LKENAFTSFSESMLAWPELRTIDIAENPIE 95
L N P + T+ A N I
Sbjct: 87 LNNNYVQELLVG----PSIETLHAANNNIS 112
Score = 40.6 bits (95), Expect = 6e-05
Identities = 16/76 (21%), Positives = 33/76 (43%), Gaps = 3/76 (3%)
Query: 21 NLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVG-LPNLYHLNLKENAFTSFSESML 79
+T +R ++ L L N ++ + L L HLNL+ N ++
Sbjct: 131 KITMLRDLDEGCRSRVQYLDLKLN-EIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVV 189
Query: 80 AWPELRTIDIAENPIE 95
+ +L+T+D++ N +
Sbjct: 190 -FAKLKTLDLSSNKLA 204
Score = 28.7 bits (64), Expect = 0.89
Identities = 10/87 (11%), Positives = 24/87 (27%), Gaps = 2/87 (2%)
Query: 8 LSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLK 67
L + ++G + T + + + K + + + + + L K
Sbjct: 310 LKRKEHALLSGQGSETERLECERENQARQREIDALKE-QYRTVIDQVTLRKQAKITLEQK 368
Query: 68 ENAFTSFSESML-AWPELRTIDIAENP 93
+ A + A EL
Sbjct: 369 KKALDEQVSNGRRAHAELDGTLQQAVG 395
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid,
MD-2, LPS, glycoprotein response, inflammatory response,
innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens}
PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Length = 276
Score = 48.0 bits (115), Expect = 2e-07
Identities = 22/121 (18%), Positives = 43/121 (35%), Gaps = 32/121 (26%)
Query: 7 GLSYLKRLEIT---GASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYH 63
L + L ++ + + ++ GAF + L+ L L+ N +LK + + L +L
Sbjct: 171 VLHQMPLLNLSLDLSLNPMNFIQPGAF-KEIRLKELALDTN-QLKSVPDGIFDRLTSLQK 228
Query: 64 LNLKENAFTSFSESMLAWPELRTIDIAENPIECGCN-ILWLREMLVR---RNTSAVFCNS 119
+ L NP +C C I +L L + + + C+
Sbjct: 229 IWL-----------------------HTNPWDCSCPRIDYLSRWLNKNSQKEQGSAKCSG 265
Query: 120 P 120
Sbjct: 266 S 266
Score = 44.2 bits (105), Expect = 3e-06
Identities = 20/89 (22%), Positives = 37/89 (41%), Gaps = 3/89 (3%)
Query: 7 GLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNL 66
L+ L+++ + + GA+ +L TL L N ++ + A GL +L L
Sbjct: 50 SFPELQVLDLSR-CEIQTIEDGAYQSLSHLSTLILTGN-PIQSLALGAFSGLSSLQKLVA 107
Query: 67 KENAFTSFSESMLAWP-ELRTIDIAENPI 94
E S + L+ +++A N I
Sbjct: 108 VETNLASLENFPIGHLKTLKELNVAHNLI 136
Score = 43.8 bits (104), Expect = 5e-06
Identities = 16/75 (21%), Positives = 31/75 (41%), Gaps = 2/75 (2%)
Query: 21 NLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESMLA 80
L + +F L+ L L++ +++ IE+ A L +L L L N S + +
Sbjct: 39 PLRHLGSYSFFSFPELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFS 97
Query: 81 -WPELRTIDIAENPI 94
L+ + E +
Sbjct: 98 GLSSLQKLVAVETNL 112
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain,
protein binding, extra protein, structural genomics;
2.80A {Bacteroides thetaiotaomicron}
Length = 876
Score = 42.9 bits (101), Expect = 1e-05
Identities = 20/102 (19%), Positives = 39/102 (38%), Gaps = 6/102 (5%)
Query: 6 KGLSYLKRLEITG------ASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLP 59
S + + ++ N + + G + + L T+ L N + ++ LP
Sbjct: 694 ATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLP 753
Query: 60 NLYHLNLKENAFTSFSESMLAWPELRTIDIAENPIECGCNIL 101
L ++++ N F+SF L +L+ I G IL
Sbjct: 754 YLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRIL 795
Score = 41.4 bits (97), Expect = 4e-05
Identities = 17/105 (16%), Positives = 37/105 (35%), Gaps = 15/105 (14%)
Query: 4 EVKGLSYLKRLEITGASNLTRVRKGAFADN-----LNLETLTLNKNPKLKIIEEDALVGL 58
K + + ++ + + + + +N T+TL+ N +++ +
Sbjct: 639 NAKSVYVMGSVDFSY-NKIGSEGRNISCSMDDYKGINASTVTLSYN-EIQKFPTELFATG 696
Query: 59 PNLYHLNLKENAFTSFSESMLA--------WPELRTIDIAENPIE 95
+ + L N TS E+ L L TID+ N +
Sbjct: 697 SPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLT 741
Score = 37.9 bits (88), Expect = 5e-04
Identities = 15/77 (19%), Positives = 27/77 (35%), Gaps = 5/77 (6%)
Query: 21 NLTRVRKGAFADNL-NLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESML 79
NL A + L L N K++ + +A L L L N E
Sbjct: 559 NLEEFPASASLQKMVKLGLLDCVHN-KVRHL--EAFGTNVKLTDLKLDYNQIEEIPEDFC 615
Query: 80 AW-PELRTIDIAENPIE 95
A+ ++ + + N ++
Sbjct: 616 AFTDQVEGLGFSHNKLK 632
Score = 37.5 bits (87), Expect = 0.001
Identities = 16/91 (17%), Positives = 29/91 (31%), Gaps = 8/91 (8%)
Query: 36 LETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESMLAWPELRTIDIAENPIE 95
N L+ + P+L L + N E + P+L +DIA+NP
Sbjct: 784 RHQRDAEGNRILRQWPT-GITTCPSLIQLQIGSNDIRKVDEKLT--PQLYILDIADNPNI 840
Query: 96 CG-----CNILWLREMLVRRNTSAVFCNSPA 121
C + ++ + + A
Sbjct: 841 SIDVTSVCPYIEAGMYVLLYDKTQDIRGCDA 871
Score = 34.1 bits (78), Expect = 0.014
Identities = 19/104 (18%), Positives = 42/104 (40%), Gaps = 1/104 (0%)
Query: 8 LSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLK 67
+S ++ I + + +L +N+NP++K I++D+ + L + NL
Sbjct: 375 MSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNL- 433
Query: 68 ENAFTSFSESMLAWPELRTIDIAENPIECGCNILWLREMLVRRN 111
N T S+++ +L+ I A +P + +
Sbjct: 434 TNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYA 477
Score = 33.3 bits (76), Expect = 0.020
Identities = 16/71 (22%), Positives = 28/71 (39%), Gaps = 11/71 (15%)
Query: 35 NLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESMLAW----------PEL 84
+L + L P + + D L LP L LN+ N S ++ W P++
Sbjct: 492 DLTDVELYNCPNMTQLP-DFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKI 550
Query: 85 RTIDIAENPIE 95
+ + N +E
Sbjct: 551 QIFYMGYNNLE 561
Score = 31.8 bits (72), Expect = 0.084
Identities = 19/94 (20%), Positives = 37/94 (39%), Gaps = 8/94 (8%)
Query: 3 KEVKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLY 62
K ++ L+ L+ + S T ++ N + +N EE + L +L
Sbjct: 442 KAIQRLTKLQIIYFAN-SPFTYDNIAVDWEDANSDYAKQYEN------EELSWSNLKDLT 494
Query: 63 HLNLKENAF-TSFSESMLAWPELRTIDIAENPIE 95
+ L T + + PEL++++IA N
Sbjct: 495 DVELYNCPNMTQLPDFLYDLPELQSLNIACNRGI 528
Score = 25.6 bits (56), Expect = 9.0
Identities = 13/73 (17%), Positives = 29/73 (39%), Gaps = 3/73 (4%)
Query: 7 GLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNL 66
LS L + I + ++K + +L + N ++ I + A+ L L +
Sbjct: 399 NLSDLLQDAINRNPEMKPIKKDSRI-SLKDTQIGNLTN-RITFISK-AIQRLTKLQIIYF 455
Query: 67 KENAFTSFSESML 79
+ FT + ++
Sbjct: 456 ANSPFTYDNIAVD 468
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat
protein, structural genomi center for structural
genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Length = 197
Score = 41.1 bits (97), Expect = 3e-05
Identities = 19/94 (20%), Positives = 33/94 (35%), Gaps = 8/94 (8%)
Query: 3 KEVKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLY 62
+ GL+ L L+I S + ++ L+ N + I L LP L
Sbjct: 106 PNLSGLTSLTLLDI-SHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM--PLKTLPELK 162
Query: 63 HLNLKENAFTSFS--ESMLAWPELRTIDIAENPI 94
LN++ + + E P+L + I
Sbjct: 163 SLNIQFDGVHDYRGIEDF---PKLNQLYAFSQTI 193
Score = 35.7 bits (83), Expect = 0.002
Identities = 17/93 (18%), Positives = 38/93 (40%), Gaps = 4/93 (4%)
Query: 3 KEVKGLSYLKRLEITGASNLTRVRK-GAFADNLNLETLTLNKNPKLKIIEEDALVGLPNL 61
++ G+ Y ++ +N + NLE L + + + L GL +L
Sbjct: 57 TDLTGIEYAHNIKDLTINN-IHATNYNPISGLSNLERLRIMGK-DVTSDKIPNLSGLTSL 114
Query: 62 YHLNLKENAFTSFSESMLAW-PELRTIDIAENP 93
L++ +A + + P++ +ID++ N
Sbjct: 115 TLLDISHSAHDDSILTKINTLPKVNSIDLSYNG 147
Score = 31.1 bits (71), Expect = 0.092
Identities = 7/71 (9%), Positives = 23/71 (32%), Gaps = 5/71 (7%)
Query: 3 KEVKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLY 62
++ L + ++++ +T + L++L + + + + + P L
Sbjct: 130 TKINTLPKVNSIDLSYNGAITDIM--PLKTLPELKSLNIQFD---GVHDYRGIEDFPKLN 184
Query: 63 HLNLKENAFTS 73
L
Sbjct: 185 QLYAFSQTIGG 195
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A
resolution, N-formylmethionine, alpha subunit; HET: FME;
2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1
c.10.2.2 PDB: 1ltx_A*
Length = 567
Score = 41.3 bits (96), Expect = 4e-05
Identities = 19/95 (20%), Positives = 36/95 (37%), Gaps = 8/95 (8%)
Query: 4 EVKGLSYLKRLEITGASN--LTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNL 61
+ L L + S+ L + A LE L + N L+ ++ + LP L
Sbjct: 455 VLCHLEQLLLVTHLDLSHNRLRALPPA-LAALRCLEVLQASDN-ALENVDG--VANLPRL 510
Query: 62 YHLNLKENAFTSFSE--SMLAWPELRTIDIAENPI 94
L L N + +++ P L +++ N +
Sbjct: 511 QELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSL 545
Score = 31.3 bits (70), Expect = 0.098
Identities = 17/73 (23%), Positives = 30/73 (41%), Gaps = 5/73 (6%)
Query: 35 NLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSE-SMLAWPELRTIDIAENP 93
+ L L+ N +L+ + AL L L L +NA + + L P L+ + + N
Sbjct: 464 LVTHLDLSHN-RLRALP-PALAALRCLEVLQASDNALENVDGVANL--PRLQELLLCNNR 519
Query: 94 IECGCNILWLREM 106
++ I L
Sbjct: 520 LQQSAAIQPLVSC 532
Score = 31.3 bits (70), Expect = 0.099
Identities = 13/76 (17%), Positives = 26/76 (34%), Gaps = 3/76 (3%)
Query: 20 SNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESML 79
S + ++ L L + L L + HL+L N + ++
Sbjct: 427 SKFLLENSVLKMEYADVRVLHLAHK---DLTVLCHLEQLLLVTHLDLSHNRLRALPPALA 483
Query: 80 AWPELRTIDIAENPIE 95
A L + ++N +E
Sbjct: 484 ALRCLEVLQASDNALE 499
Score = 29.7 bits (66), Expect = 0.34
Identities = 24/90 (26%), Positives = 36/90 (40%), Gaps = 10/90 (11%)
Query: 6 KGLSYLKRLEITGASN--LTRVRKGAFADNLNLETLTLNKNPKLKIIEE-DALVGLPNLY 62
L+ L+ LE+ AS+ L V A+ L+ L L N +L+ LV P L
Sbjct: 480 PALAALRCLEVLQASDNALENVDG--VANLPRLQELLLCNN-RLQQSAAIQPLVSCPRLV 536
Query: 63 HLNLKENAFTSFSES----MLAWPELRTID 88
LNL+ N+ P + +I
Sbjct: 537 LLNLQGNSLCQEEGIQERLAEMLPSVSSIL 566
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1,
lipopeptide, innate immunity, glycoPro immune response,
inflammatory response, leucine-rich repeat membrane,
receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Length = 520
Score = 41.4 bits (97), Expect = 4e-05
Identities = 11/76 (14%), Positives = 28/76 (36%), Gaps = 3/76 (3%)
Query: 21 NLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESMLA 80
++ + L L ++ N +++ ++ L +L+L N S
Sbjct: 32 YISELWTSDILSLSKLRILIISHN-RIQYLDISVFKFNQELEYLDLSHNKLVKISCHPT- 89
Query: 81 WPELRTIDIAENPIEC 96
L+ +D++ N +
Sbjct: 90 -VNLKHLDLSFNAFDA 104
Score = 36.4 bits (84), Expect = 0.002
Identities = 17/93 (18%), Positives = 29/93 (31%), Gaps = 5/93 (5%)
Query: 6 KGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLN 65
+ S + T S V + L + N L + L L L
Sbjct: 297 EIFSNMNIKNFTV-SGTRMVHMLCPSKISPFLHLDFSNN-LLTDTVFENCGHLTELETLI 354
Query: 66 LKENAFTSFSESMLA---WPELRTIDIAENPIE 95
L+ N S+ L+ +DI++N +
Sbjct: 355 LQMNQLKELSKIAEMTTQMKSLQQLDISQNSVS 387
Score = 36.0 bits (83), Expect = 0.003
Identities = 18/91 (19%), Positives = 37/91 (40%), Gaps = 4/91 (4%)
Query: 7 GLSYLKRLEITGASNLTRVRK--GAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHL 64
L+ L+ L + + L + K +L+ L +++N ++ +L L
Sbjct: 346 HLTELETLILQM-NQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSL 404
Query: 65 NLKENAFTSFSESMLAWPELRTIDIAENPIE 95
N+ N T L P ++ +D+ N I+
Sbjct: 405 NMSSNILTDTIFRCL-PPRIKVLDLHSNKIK 434
Score = 35.6 bits (82), Expect = 0.003
Identities = 10/51 (19%), Positives = 20/51 (39%), Gaps = 2/51 (3%)
Query: 21 NLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAF 71
+ + K L+ L + N +LK + + L +L + L N +
Sbjct: 432 KIKSIPKQVV-KLEALQELNVASN-QLKSVPDGIFDRLTSLQKIWLHTNPW 480
Score = 31.0 bits (70), Expect = 0.13
Identities = 21/97 (21%), Positives = 29/97 (29%), Gaps = 24/97 (24%)
Query: 6 KGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALV--------- 56
LS L+ L I+ + + + F N LE L L+ N KL I V
Sbjct: 42 LSLSKLRILIISH-NRIQYLDISVFKFNQELEYLDLSHN-KLVKISCHPTVNLKHLDLSF 99
Query: 57 -------------GLPNLYHLNLKENAFTSFSESMLA 80
+ L L L S +A
Sbjct: 100 NAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIA 136
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder,
asparagine ladder, virulence factor, solenoid, cell
WALL; 2.70A {Listeria monocytogenes}
Length = 457
Score = 40.1 bits (94), Expect = 1e-04
Identities = 17/88 (19%), Positives = 30/88 (34%), Gaps = 6/88 (6%)
Query: 8 LSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLK 67
L++ +L A ++++ N L L I E L P L +L L
Sbjct: 271 LTHNTQLIYFQAEGCRKIKELDVTHNTQLYLLDCQAAG----ITELDLSQNPKLVYLYLN 326
Query: 68 ENAFTSFSESMLAWPELRTIDIAENPIE 95
T S +L+++ I+
Sbjct: 327 NTELTELDVSHN--TKLKSLSCVNAHIQ 352
Score = 34.7 bits (80), Expect = 0.006
Identities = 17/93 (18%), Positives = 31/93 (33%), Gaps = 14/93 (15%)
Query: 11 LKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKL--------KIIEEDALVGLPNLY 62
L +L+++ LT + L + ++ N +L K I + + L
Sbjct: 118 LTKLDVSQNPLLTYL----NCARNTLTEIDVSHNTQLTELDCHLNKKITKLDVTPQTQLT 173
Query: 63 HLNLKENAFTSFSESMLAWPELRTIDIAENPIE 95
L+ N T S L ++ N I
Sbjct: 174 TLDCSFNKITELDVSQN--KLLNRLNCDTNNIT 204
Score = 34.3 bits (79), Expect = 0.010
Identities = 15/66 (22%), Positives = 25/66 (37%), Gaps = 6/66 (9%)
Query: 30 FADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESMLAWPELRTIDI 89
N+ L L + N KL I+ + L L + + N T S L +L T+
Sbjct: 208 LNQNIQLTFLDCSSN-KLTEID---VTPLTQLTYFDCSVNPLTELDVSTL--SKLTTLHC 261
Query: 90 AENPIE 95
+ +
Sbjct: 262 IQTDLL 267
Score = 33.9 bits (78), Expect = 0.012
Identities = 17/88 (19%), Positives = 29/88 (32%), Gaps = 6/88 (6%)
Query: 8 LSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLK 67
+S+ +L ++ K L TL + N I E + L LN
Sbjct: 144 VSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNK----ITELDVSQNKLLNRLNCD 199
Query: 68 ENAFTSFSESMLAWPELRTIDIAENPIE 95
N T + +L +D + N +
Sbjct: 200 TNNITKLDLNQN--IQLTFLDCSSNKLT 225
Score = 33.1 bits (76), Expect = 0.023
Identities = 16/66 (24%), Positives = 24/66 (36%), Gaps = 6/66 (9%)
Query: 30 FADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESMLAWPELRTIDI 89
+ N NL L + N + + L L +LN N T S P L ++
Sbjct: 81 LSQNTNLTYLACDSNK----LTNLDVTPLTKLTYLNCDTNKLTKLDVSQN--PLLTYLNC 134
Query: 90 AENPIE 95
A N +
Sbjct: 135 ARNTLT 140
Score = 30.0 bits (68), Expect = 0.27
Identities = 12/72 (16%), Positives = 29/72 (40%), Gaps = 4/72 (5%)
Query: 30 FADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESMLAWPELRTIDI 89
+ N L++L+ I + ++ +P L + E + + L L TI +
Sbjct: 335 VSHNTKLKSLSCVNA---HIQDFSSVGKIPALNNNFEAEGQTITMPKETLTNNSL-TIAV 390
Query: 90 AENPIECGCNIL 101
+ + ++ N +
Sbjct: 391 SPDLLDQFGNPM 402
Score = 27.0 bits (60), Expect = 2.7
Identities = 8/61 (13%), Positives = 20/61 (32%), Gaps = 2/61 (3%)
Query: 35 NLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESMLAWPELRTIDIAENPI 94
N + +++ + + L L L+ ++ T + + L + N I
Sbjct: 19 NFASEVAAAF-EMQATDTISEEQLATLTSLDCHNSSITDMTG-IEKLTGLTKLICTSNNI 76
Query: 95 E 95
Sbjct: 77 T 77
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto;
diacyl lipopeptide, innate immunity, Leu repeat, cell
membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG;
2.90A {Mus musculus}
Length = 562
Score = 39.9 bits (93), Expect = 1e-04
Identities = 13/76 (17%), Positives = 35/76 (46%), Gaps = 3/76 (3%)
Query: 21 NLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESMLA 80
+++ +R + L L L+ N +++ ++ + +L +L++ N + S +
Sbjct: 63 SISELRMPDISFLSELRVLRLSHN-RIRSLDFHVFLFNQDLEYLDVSHNRLQNISCCPM- 120
Query: 81 WPELRTIDIAENPIEC 96
LR +D++ N +
Sbjct: 121 -ASLRHLDLSFNDFDV 135
Score = 31.8 bits (72), Expect = 0.079
Identities = 19/90 (21%), Positives = 35/90 (38%), Gaps = 6/90 (6%)
Query: 7 GLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEE--DALVGLPNLYHL 64
S L T + T + L+TL L +N LK + + +L L
Sbjct: 351 SPSSFTFLNFTQ-NVFTDSVFQGCSTLKRLQTLILQRN-GLKNFFKVALMTKNMSSLETL 408
Query: 65 NLKENAFTSFSESML-AWPE-LRTIDIAEN 92
++ N+ S + AW E + ++++ N
Sbjct: 409 DVSLNSLNSHAYDRTCAWAESILVLNLSSN 438
Score = 30.6 bits (69), Expect = 0.16
Identities = 20/103 (19%), Positives = 32/103 (31%), Gaps = 24/103 (23%)
Query: 7 GLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALV---------- 56
LS L+ L + + + + F N +LE L ++ N +L+ I +
Sbjct: 74 FLSELRVLRL-SHNRIRSLDFHVFLFNQDLEYLDVSHN-RLQNISCCPMASLRHLDLSFN 131
Query: 57 ------------GLPNLYHLNLKENAFTSFSESMLAWPELRTI 87
L L L L F +A L I
Sbjct: 132 DFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCI 174
Score = 30.2 bits (68), Expect = 0.21
Identities = 20/106 (18%), Positives = 37/106 (34%), Gaps = 29/106 (27%)
Query: 35 NLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESMLAWPELRTIDIAEN-- 92
++ L L+ N L L P + L+L N S + + L+ +++A N
Sbjct: 429 SILVLNLSSN-MLTGSVFRCLP--PKVKVLDLHNNRIMSIPKDVTHLQALQELNVASNQL 485
Query: 93 ----------------------PIECGCN-ILWLREMLVRRNTSAV 115
P +C C I +L E + +++ V
Sbjct: 486 KSVPDGVFDRLTSLQYIWLHDNPWDCTCPGIRYLSEW-INKHSGVV 530
Score = 26.8 bits (59), Expect = 3.1
Identities = 11/64 (17%), Positives = 28/64 (43%), Gaps = 4/64 (6%)
Query: 33 NLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESMLA-WPELRTIDIAE 91
+N++ L+++ P + ++ + LN +N FT + L+T+ +
Sbjct: 330 EMNIKMLSISDTPFIHMVCPP---SPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQR 386
Query: 92 NPIE 95
N ++
Sbjct: 387 NGLK 390
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling
protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15
b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Length = 605
Score = 39.7 bits (92), Expect = 1e-04
Identities = 21/94 (22%), Positives = 39/94 (41%), Gaps = 8/94 (8%)
Query: 3 KEVKGLSYLKRLEITGASN--LTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPN 60
++ GL +L +LE N +T + + L+TL+L N +I + L GL
Sbjct: 122 SDINGLVHLPQLESLYLGNNKITDIT--VLSRLTKLDTLSLEDN---QISDIVPLAGLTK 176
Query: 61 LYHLNLKENAFTSFSESMLAWPELRTIDIAENPI 94
L +L L +N + + L +++
Sbjct: 177 LQNLYLSKNHISDLRA-LAGLKNLDVLELFSQEC 209
Score = 38.9 bits (90), Expect = 3e-04
Identities = 24/95 (25%), Positives = 44/95 (46%), Gaps = 8/95 (8%)
Query: 3 KEVKGLSYLKRLEITGASN--LTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPN 60
K V+G+ YL + + LT ++ + NL L L++N KI + +L L
Sbjct: 56 KSVQGIQYLPNVTKLFLNGNKLTDIK--PLTNLKNLGWLFLDEN---KIKDLSSLKDLKK 110
Query: 61 LYHLNLKENAFTSFSESMLAWPELRTIDIAENPIE 95
L L+L+ N + ++ P+L ++ + N I
Sbjct: 111 LKSLSLEHNGISDI-NGLVHLPQLESLYLGNNKIT 144
Score = 35.1 bits (80), Expect = 0.006
Identities = 22/115 (19%), Positives = 42/115 (36%), Gaps = 11/115 (9%)
Query: 3 KEVKGLSYLKRLEITGASN--LTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPN 60
++ LS L +L+ + ++ + A L+ L L+KN I + AL GL N
Sbjct: 144 TDITVLSRLTKLDTLSLEDNQISDIV--PLAGLTKLQNLYLSKN---HISDLRALAGLKN 198
Query: 61 LYHLNLKENAFTSFSESML----AWPELRTIDIAENPIECGCNILWLREMLVRRN 111
L L L + + ++ D + E + + V+ +
Sbjct: 199 LDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEIISDDGDYEKPNVKWH 253
Score = 32.4 bits (73), Expect = 0.042
Identities = 21/93 (22%), Positives = 38/93 (40%), Gaps = 11/93 (11%)
Query: 5 VKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHL 64
L+ + ++ S++ V+ N+ L LN N K+ + L L NL L
Sbjct: 39 QNELNSIDQIIANN-SDIKSVQ--GIQYLPNVTKLFLNGN---KLTDIKPLTNLKNLGWL 92
Query: 65 NLKENAFTSFS--ESMLAWPELRTIDIAENPIE 95
L EN S + + +L+++ + N I
Sbjct: 93 FLDENKIKDLSSLKDL---KKLKSLSLEHNGIS 122
Score = 31.2 bits (70), Expect = 0.10
Identities = 7/62 (11%), Positives = 17/62 (27%), Gaps = 6/62 (9%)
Query: 35 NLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSE-SMLAWPELRTIDIAENP 93
L K + + L ++ + + S L P + + + N
Sbjct: 22 ETIKDNLKKK---SVTDAVTQNELNSIDQIIANNSDIKSVQGIQYL--PNVTKLFLNGNK 76
Query: 94 IE 95
+
Sbjct: 77 LT 78
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP,
ribonucleoprotein, RNA binding protein/RNA complex;
2.38A {Homo sapiens} SCOP: c.10.2.4
Length = 176
Score = 38.1 bits (89), Expect = 3e-04
Identities = 18/67 (26%), Positives = 29/67 (43%), Gaps = 3/67 (4%)
Query: 30 FADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSE--SMLAWPELRTI 87
F L+TL +N N ++ I E LP+L L L N+ + + + L +
Sbjct: 60 FPLLRRLKTLLVNNN-RICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYL 118
Query: 88 DIAENPI 94
I NP+
Sbjct: 119 CILRNPV 125
Score = 36.6 bits (85), Expect = 9e-04
Identities = 22/93 (23%), Positives = 43/93 (46%), Gaps = 8/93 (8%)
Query: 3 KEVKGLSYLKRLEITGASN--LTRVRKGAFADNLNLETLTLNKNPKLKIIEE-DALVGLP 59
+++ G L+RL+ +N + R+ +G +L L L N L + + D L L
Sbjct: 55 RKLDGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNN-SLVELGDLDPLASLK 113
Query: 60 NLYHLNLKENAFTSFS---ESMLAW-PELRTID 88
+L +L + N T+ ++ P++R +D
Sbjct: 114 SLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLD 146
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine
rich repeat domain, type three effector, salmonella
virulence factor; 1.90A {Salmonella typhimurium}
Length = 622
Score = 37.6 bits (87), Expect = 7e-04
Identities = 18/106 (16%), Positives = 38/106 (35%), Gaps = 9/106 (8%)
Query: 35 NLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESMLAWPELRTIDIAENPI 94
L+ L ++ N +L + L L++ N T ES++ T+++ NP+
Sbjct: 242 ELKELMVSGN-RLTSLPM----LPSGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNPL 296
Query: 95 E----CGCNILWLREMLVRRNTSAVFCNSPAPLKYKSLISLSAEDL 136
+ + AP + ++L +A+ L
Sbjct: 297 SERTLQALREITSAPGYSGPIIRFDMAGASAPRETRALHLAAADWL 342
Score = 31.0 bits (70), Expect = 0.12
Identities = 12/61 (19%), Positives = 18/61 (29%), Gaps = 5/61 (8%)
Query: 35 NLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESMLAWPELRTIDIAENPI 94
++ TL + N L + P L L + N TS EL +
Sbjct: 62 HITTLVIPDN-NLTSLPA----LPPELRTLEVSGNQLTSLPVLPPGLLELSIFSNPLTHL 116
Query: 95 E 95
Sbjct: 117 P 117
Score = 29.9 bits (67), Expect = 0.30
Identities = 16/78 (20%), Positives = 30/78 (38%), Gaps = 9/78 (11%)
Query: 35 NLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESMLAWPELRTIDIAENPI 94
L+ L+++ N +L + LY L N TS L+ + ++ N +
Sbjct: 182 GLQELSVSDN-QLASLPTL----PSELYKLWAYNNRLTSLPALP---SGLKELIVSGNRL 233
Query: 95 EC-GCNILWLREMLVRRN 111
L+E++V N
Sbjct: 234 TSLPVLPSELKELMVSGN 251
Score = 27.6 bits (61), Expect = 1.8
Identities = 11/60 (18%), Positives = 18/60 (30%), Gaps = 8/60 (13%)
Query: 35 NLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESMLAWPELRTIDIAENPI 94
L L N +L + L L++ +N S EL + N +
Sbjct: 162 ELCKLWAYNN-QLTSLPML----PSGLQELSVSDNQLASLPTLP---SELYKLWAYNNRL 213
Score = 27.2 bits (60), Expect = 2.4
Identities = 10/61 (16%), Positives = 21/61 (34%), Gaps = 8/61 (13%)
Query: 35 NLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESMLAWPELRTIDIAENPI 94
L+ L+++ N + L L N TS L+ + +++N +
Sbjct: 142 GLQELSVSDNQLASLPAL-----PSELCKLWAYNNQLTSLPML---PSGLQELSVSDNQL 193
Query: 95 E 95
Sbjct: 194 A 194
Score = 26.8 bits (59), Expect = 3.9
Identities = 12/61 (19%), Positives = 22/61 (36%), Gaps = 8/61 (13%)
Query: 35 NLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESMLAWPELRTIDIAENPI 94
L L++ NP + L L + N TS P L+ + +++N +
Sbjct: 102 GLLELSIFSNPLTHLPAL-----PSGLCKLWIFGNQLTSLPVLP---PGLQELSVSDNQL 153
Query: 95 E 95
Sbjct: 154 A 154
Score = 26.0 bits (57), Expect = 6.9
Identities = 12/61 (19%), Positives = 20/61 (32%), Gaps = 8/61 (13%)
Query: 35 NLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESMLAWPELRTIDIAENPI 94
L L + N +L + P L L++ +N S EL + N +
Sbjct: 122 GLCKLWIFGN-QLTSLPVL----PPGLQELSVSDNQLASLPALP---SELCKLWAYNNQL 173
Query: 95 E 95
Sbjct: 174 T 174
Score = 26.0 bits (57), Expect = 7.1
Identities = 12/61 (19%), Positives = 20/61 (32%), Gaps = 8/61 (13%)
Query: 35 NLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESMLAWPELRTIDIAENPI 94
L L N +L + L L + N TS EL+ + ++ N +
Sbjct: 202 ELYKLWAYNN-RLTSLPAL----PSGLKELIVSGNRLTSLPVLP---SELKELMVSGNRL 253
Query: 95 E 95
Sbjct: 254 T 254
Score = 26.0 bits (57), Expect = 7.1
Identities = 12/61 (19%), Positives = 26/61 (42%), Gaps = 7/61 (11%)
Query: 35 NLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESMLAWPELRTIDIAENPI 94
L + ++ L + + ++ L + +N TS PELRT++++ N +
Sbjct: 41 GNAVLNVGES-GLTTLPDC---LPAHITTLVIPDNNLTSLPALP---PELRTLEVSGNQL 93
Query: 95 E 95
Sbjct: 94 T 94
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain,
EF-hand domain; 1.6A {Listeria monocytogenes} SCOP:
b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A*
2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Length = 291
Score = 37.3 bits (87), Expect = 9e-04
Identities = 21/94 (22%), Positives = 39/94 (41%), Gaps = 8/94 (8%)
Query: 3 KEVKGLSYLKRLEITGASN--LTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPN 60
++ GL +L +LE N +T + + L+TL+L N +I + L GL
Sbjct: 125 SDINGLVHLPQLESLYLGNNKITDIT--VLSRLTKLDTLSLEDN---QISDIVPLAGLTK 179
Query: 61 LYHLNLKENAFTSFSESMLAWPELRTIDIAENPI 94
L +L L +N + + L +++
Sbjct: 180 LQNLYLSKNHISDLRA-LAGLKNLDVLELFSQEC 212
Score = 33.1 bits (76), Expect = 0.023
Identities = 27/115 (23%), Positives = 44/115 (38%), Gaps = 26/115 (22%)
Query: 3 KEVKGLSYLKRLE-----------ITGASNLTRVRKGAFADN-----------LNLETLT 40
K V+G+ YL + I +NL + +N L++L+
Sbjct: 59 KSVQGIQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLS 118
Query: 41 LNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESMLAWPELRTIDIAENPIE 95
L N I + + LV LP L L L N T + + +L T+ + +N I
Sbjct: 119 LEHN---GISDINGLVHLPQLESLYLGNNKITDIT-VLSRLTKLDTLSLEDNQIS 169
Score = 30.8 bits (70), Expect = 0.12
Identities = 21/91 (23%), Positives = 37/91 (40%), Gaps = 7/91 (7%)
Query: 5 VKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHL 64
L+ + ++ S++ V+ N+ L LN N K+ + L L NL L
Sbjct: 42 QNELNSIDQIIANN-SDIKSVQ--GIQYLPNVTKLFLNGN---KLTDIKPLANLKNLGWL 95
Query: 65 NLKENAFTSFSESMLAWPELRTIDIAENPIE 95
L EN S+ +L+++ + N I
Sbjct: 96 FLDENKVKDL-SSLKDLKKLKSLSLEHNGIS 125
Score = 28.5 bits (64), Expect = 0.90
Identities = 7/62 (11%), Positives = 17/62 (27%), Gaps = 6/62 (9%)
Query: 35 NLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSE-SMLAWPELRTIDIAENP 93
L K + + L ++ + + S L P + + + N
Sbjct: 25 ETIKDNLKKK---SVTDAVTQNELNSIDQIIANNSDIKSVQGIQYL--PNVTKLFLNGNK 79
Query: 94 IE 95
+
Sbjct: 80 LT 81
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear
protein; 2.40A {Homo sapiens} PDB: 2je1_A
Length = 149
Score = 36.2 bits (84), Expect = 0.001
Identities = 16/62 (25%), Positives = 26/62 (41%), Gaps = 3/62 (4%)
Query: 35 NLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSE--SMLAWPELRTIDIAEN 92
L+ L L+ N ++ E PNL HLNL N S + L+++D+
Sbjct: 65 KLKKLELSDN-RVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNC 123
Query: 93 PI 94
+
Sbjct: 124 EV 125
Score = 35.8 bits (83), Expect = 0.002
Identities = 22/93 (23%), Positives = 40/93 (43%), Gaps = 8/93 (8%)
Query: 3 KEVKGLSYLKRLEITGASN--LTRVRKGAFADNLNLETLTLNKNPKLKIIEE-DALVGLP 59
+ L L +L+ S+ ++ + NL L L+ N K+K + + L L
Sbjct: 55 TSIANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGN-KIKDLSTIEPLKKLE 113
Query: 60 NLYHLNLKENAFTSFS---ESMLAW-PELRTID 88
NL L+L T+ + E++ P+L +D
Sbjct: 114 NLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLD 146
Score = 30.0 bits (68), Expect = 0.19
Identities = 11/69 (15%), Positives = 29/69 (42%), Gaps = 5/69 (7%)
Query: 35 NLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFS--ESMLAWPELRTIDIAEN 92
+++ L L+ + + E L L+ TS + + +L+ +++++N
Sbjct: 18 DVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIANLPKL---NKLKKLELSDN 74
Query: 93 PIECGCNIL 101
+ G +L
Sbjct: 75 RVSGGLEVL 83
>4fmz_A Internalin; leucine rich repeat, structural genomic center for
structural genomics, JCSG, protein structure INI
PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes
serotype 4B}
Length = 347
Score = 36.8 bits (86), Expect = 0.001
Identities = 18/62 (29%), Positives = 29/62 (46%), Gaps = 4/62 (6%)
Query: 35 NLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSE-SMLAWPELRTIDIAENP 93
L +L LN N +L + + + GL NL L L +N T + L ++ + D A
Sbjct: 288 QLNSLFLNNN-QLGNEDMEVIGGLTNLTTLFLSQNHITDIRPLASL--SKMDSADFANQV 344
Query: 94 IE 95
I+
Sbjct: 345 IK 346
Score = 34.8 bits (81), Expect = 0.006
Identities = 17/93 (18%), Positives = 36/93 (38%), Gaps = 7/93 (7%)
Query: 3 KEVKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLY 62
+ L+ L + +T + A+ L +L + N KI + L L L
Sbjct: 193 SPLASLTSLHYFTA-YVNQITDIT--PVANMTRLNSLKIGNN---KITDLSPLANLSQLT 246
Query: 63 HLNLKENAFTSFSESMLAWPELRTIDIAENPIE 95
L + N + + ++ +L+ +++ N I
Sbjct: 247 WLEIGTNQISDIN-AVKDLTKLKMLNVGSNQIS 278
Score = 33.7 bits (78), Expect = 0.016
Identities = 22/93 (23%), Positives = 37/93 (39%), Gaps = 6/93 (6%)
Query: 3 KEVKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLY 62
+ L L L I + +T + A + NL L LN++ I + L L +Y
Sbjct: 82 SPLSNLVKLTNLYIGT-NKITDI--SALQNLTNLRELYLNED---NISDISPLANLTKMY 135
Query: 63 HLNLKENAFTSFSESMLAWPELRTIDIAENPIE 95
LNL N S + L + + E+ ++
Sbjct: 136 SLNLGANHNLSDLSPLSNMTGLNYLTVTESKVK 168
Score = 32.9 bits (76), Expect = 0.029
Identities = 21/93 (22%), Positives = 39/93 (41%), Gaps = 7/93 (7%)
Query: 3 KEVKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLY 62
+ ++ L L +T S + V A+ +L +L+LN N +I + L L +L+
Sbjct: 149 SPLSNMTGLNYLTVTE-SKVKDV--TPIANLTDLYSLSLNYN---QIEDISPLASLTSLH 202
Query: 63 HLNLKENAFTSFSESMLAWPELRTIDIAENPIE 95
+ N T + + L ++ I N I
Sbjct: 203 YFTAYVNQITDIT-PVANMTRLNSLKIGNNKIT 234
Score = 30.6 bits (70), Expect = 0.15
Identities = 14/67 (20%), Positives = 28/67 (41%), Gaps = 4/67 (5%)
Query: 29 AFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESMLAWPELRTID 88
A+ L L + N +I + +A+ L L LN+ N + S + +L ++
Sbjct: 238 PLANLSQLTWLEIGTN---QISDINAVKDLTKLKMLNVGSNQISDIS-VLNNLSQLNSLF 293
Query: 89 IAENPIE 95
+ N +
Sbjct: 294 LNNNQLG 300
Score = 30.2 bits (69), Expect = 0.23
Identities = 8/61 (13%), Positives = 17/61 (27%), Gaps = 4/61 (6%)
Query: 35 NLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESMLAWPELRTIDIAENPI 94
L K + + L ++ L + S + L +++ N I
Sbjct: 23 EGIRAVLQKA---SVTDVVTQEELESITKLVVAGEKVASIQG-IEYLTNLEYLNLNGNQI 78
Query: 95 E 95
Sbjct: 79 T 79
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding,
structural genomics, center for structural genomics,
JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Length = 636
Score = 36.9 bits (86), Expect = 0.001
Identities = 18/68 (26%), Positives = 28/68 (41%), Gaps = 2/68 (2%)
Query: 35 NLETLTLNKNPKL-KIIEEDALVGLPNLYHLNLKENAFTSFSESMLAWPELRTIDIAENP 93
L ++ L N KL K+ ++ LP L ++L N+F+ F L L+ I
Sbjct: 489 LLTSIDLRFN-KLTKLSDDFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQR 547
Query: 94 IECGCNIL 101
G L
Sbjct: 548 DAQGNRTL 555
Score = 34.2 bits (79), Expect = 0.010
Identities = 12/68 (17%), Positives = 25/68 (36%), Gaps = 7/68 (10%)
Query: 35 NLETLTLNKNPKL---KIIEE--DALVGLPNLYHLNLKENAFTSFSESMLAWPELRTIDI 89
L+ + + + E + + P+L L + N +E + P + +DI
Sbjct: 537 TLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRKVNEKIT--PNISVLDI 594
Query: 90 AENPIECG 97
+NP
Sbjct: 595 KDNPNISI 602
Score = 33.9 bits (78), Expect = 0.014
Identities = 13/68 (19%), Positives = 27/68 (39%), Gaps = 9/68 (13%)
Query: 33 NLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESMLA--------WPEL 84
+N+ ++ L+ N ++ ++ L +NL N T ++ L L
Sbjct: 432 GINVSSINLSNN-QISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLL 490
Query: 85 RTIDIAEN 92
+ID+ N
Sbjct: 491 TSIDLRFN 498
Score = 33.5 bits (77), Expect = 0.019
Identities = 14/69 (20%), Positives = 24/69 (34%), Gaps = 3/69 (4%)
Query: 29 AFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESMLAW--PELRT 86
AF + L +L L N ++ I + + +L+ N A +
Sbjct: 348 AFGSEIKLASLNLAYN-QITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSA 406
Query: 87 IDIAENPIE 95
ID + N I
Sbjct: 407 IDFSYNEIG 415
Score = 32.3 bits (74), Expect = 0.052
Identities = 12/58 (20%), Positives = 21/58 (36%), Gaps = 1/58 (1%)
Query: 35 NLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESMLAWPELRTIDIAEN 92
+L + + P L + L LP + +N+ N S + W L + E
Sbjct: 250 DLTDVEVYNCPNLTKLPT-FLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEK 306
Score = 31.6 bits (72), Expect = 0.074
Identities = 11/61 (18%), Positives = 25/61 (40%), Gaps = 1/61 (1%)
Query: 34 LNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESMLAWPELRTIDIAENP 93
+L +N +P+ K I++ + N T S++++ +LR + +P
Sbjct: 159 SDLIKDCINSDPQQKSIKKS-SRITLKDTQIGQLSNNITFVSKAVMRLTKLRQFYMGNSP 217
Query: 94 I 94
Sbjct: 218 F 218
Score = 31.6 bits (72), Expect = 0.092
Identities = 10/61 (16%), Positives = 23/61 (37%)
Query: 35 NLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESMLAWPELRTIDIAENPI 94
++ + + N E +L + L L N + + +L ++++A N I
Sbjct: 306 KIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQI 365
Query: 95 E 95
Sbjct: 366 T 366
Score = 29.6 bits (67), Expect = 0.43
Identities = 15/72 (20%), Positives = 31/72 (43%), Gaps = 7/72 (9%)
Query: 35 NLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESMLA-WPELRTIDIAENP 93
+L L + N ++ + E PN+ L++K+N S S + + E + +
Sbjct: 567 SLTQLQIGSN-DIRKVNEKIT---PNISVLDIKDNPNISIDLSYVCPYIEAGMYMLFYDK 622
Query: 94 IE--CGCNILWL 103
+ GC+ L +
Sbjct: 623 TQDIRGCDALDI 634
Score = 28.9 bits (65), Expect = 0.73
Identities = 12/63 (19%), Positives = 21/63 (33%), Gaps = 5/63 (7%)
Query: 35 NLETLTLNKNPKLK-IIEEDALVGLPNLYHLNLKENAFTSFSESMLA-WPELRTIDIAEN 92
L L N +L+ + L LNL N T + ++ + A N
Sbjct: 331 KLGMLECLYN-QLEGKLPA--FGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHN 387
Query: 93 PIE 95
++
Sbjct: 388 KLK 390
Score = 27.7 bits (62), Expect = 1.4
Identities = 13/83 (15%), Positives = 27/83 (32%), Gaps = 10/83 (12%)
Query: 21 NLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVG-LPNLYHLNLKEN--------AF 71
+T + +E L+ N KLK I + + ++ N F
Sbjct: 364 QITEIPANFCGFTEQVENLSFAHN-KLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNF 422
Query: 72 TSFSESMLAWPELRTIDIAENPI 94
+ + +I+++ N I
Sbjct: 423 DPLDPTPFKGINVSSINLSNNQI 445
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2
protein, silver-stainable protein SSP29, acidic prote in
leucines, structural genomics; NMR {Homo sapiens} PDB:
2rr6_A 2jqd_A
Length = 168
Score = 35.9 bits (83), Expect = 0.002
Identities = 22/92 (23%), Positives = 33/92 (35%), Gaps = 6/92 (6%)
Query: 3 KEVKGLSYLKRLEITGASN--LTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPN 60
V L L +L+ S + NL L L+ N I + L L
Sbjct: 62 ISVSNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLEC 121
Query: 61 LYHLNLKENAFTSFS---ESMLAW-PELRTID 88
L L+L T+ + ES+ P+L +D
Sbjct: 122 LKSLDLFNCEVTNLNDYRESVFKLLPQLTYLD 153
Score = 35.9 bits (83), Expect = 0.002
Identities = 16/67 (23%), Positives = 28/67 (41%), Gaps = 3/67 (4%)
Query: 30 FADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSE--SMLAWPELRTI 87
L+ L L++N ++ + LPNL HLNL N S + L+++
Sbjct: 67 LPKLPKLKKLELSEN-RIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSL 125
Query: 88 DIAENPI 94
D+ +
Sbjct: 126 DLFNCEV 132
Score = 27.0 bits (60), Expect = 1.8
Identities = 15/67 (22%), Positives = 28/67 (41%), Gaps = 1/67 (1%)
Query: 35 NLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESMLAWPELRTIDIAENPI 94
+ L L+ E NL L+L S ++ P+L+ ++++EN I
Sbjct: 25 AVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRI 83
Query: 95 ECGCNIL 101
G ++L
Sbjct: 84 FGGLDML 90
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity,
antibody, T cell, leucine-rich repeat, immune system;
1.70A {Petromyzon marinus} PDB: 3m18_A
Length = 251
Score = 35.8 bits (83), Expect = 0.003
Identities = 30/112 (26%), Positives = 47/112 (41%), Gaps = 31/112 (27%)
Query: 7 GLSYLKRLEITGASN-LTRVRKGAFADNL-NLETLTLNKNPKLKIIEEDALVGLPNLYHL 64
L+ LK L + +N L + GAF D L NL+TL+L+ N +L+ + A L L +
Sbjct: 129 RLTKLKELRL--NTNQLQSIPAGAF-DKLTNLQTLSLSTN-QLQSVPHGAFDRLGKLQTI 184
Query: 65 NLKENAFTSFSESMLAWPELRTIDIAENPIECGCN-ILWLREMLVRRNTSAV 115
L N +C IL+L + + R N++ V
Sbjct: 185 TLF-----------------------GNQFDCSRCEILYLSQWI-RENSNKV 212
Score = 33.9 bits (78), Expect = 0.009
Identities = 20/67 (29%), Positives = 25/67 (37%), Gaps = 2/67 (2%)
Query: 7 GLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNL 66
GL+ L L + L + G F D L TL L N +L + L L L L
Sbjct: 57 GLTKLTWLNLDYNQ-LQTLSAGVFDDLTELGTLGLANN-QLASLPLGVFDHLTQLDKLYL 114
Query: 67 KENAFTS 73
N S
Sbjct: 115 GGNQLKS 121
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell
invasion; 2.05A {Listeria monocytogenes}
Length = 263
Score = 35.4 bits (82), Expect = 0.004
Identities = 15/60 (25%), Positives = 24/60 (40%), Gaps = 4/60 (6%)
Query: 35 NLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESMLAWPELRTIDIAENPI 94
NLE L++ N K+ L L L L+L N T+ + ++ ID+
Sbjct: 129 NLEILSIRNN---KLKSIVMLGFLSKLEVLDLHGNEITNTG-GLTRLKKVNWIDLTGQKC 184
Score = 31.5 bits (72), Expect = 0.061
Identities = 16/94 (17%), Positives = 35/94 (37%), Gaps = 7/94 (7%)
Query: 3 KEVKGLSYLKRLEITGASNLTRVRKGAFADNL-NLETLTLNKNPKLKIIEEDALVGLPNL 61
++ L ++ N + ++ A NL+ L L+ N +I + L L L
Sbjct: 32 TDLVSQKELSGVQNFNGDN-SNIQSLAGMQFFTNLKELHLSHN---QISDLSPLKDLTKL 87
Query: 62 YHLNLKENAFTSFSESMLAWPELRTIDIAENPIE 95
L++ N + + + L + + N +
Sbjct: 88 EELSVNRNRLKNLNG--IPSACLSRLFLDNNELR 119
Score = 29.2 bits (66), Expect = 0.45
Identities = 10/61 (16%), Positives = 21/61 (34%), Gaps = 4/61 (6%)
Query: 35 NLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESMLAWPELRTIDIAENPI 94
N L K + + + L + + N + S M + L+ + ++ N I
Sbjct: 20 NAVKQNLGKQ---SVTDLVSQKELSGVQNFNGDNSNIQSL-AGMQFFTNLKELHLSHNQI 75
Query: 95 E 95
Sbjct: 76 S 76
Score = 28.1 bits (63), Expect = 1.2
Identities = 17/79 (21%), Positives = 27/79 (34%), Gaps = 7/79 (8%)
Query: 3 KEVKGLSYLKRLEITGASN--LTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPN 60
++ L +LK LEI N L + LE L L+ N +I L L
Sbjct: 119 RDTDSLIHLKNLEILSIRNNKLKSIV--MLGFLSKLEVLDLHGN---EITNTGGLTRLKK 173
Query: 61 LYHLNLKENAFTSFSESML 79
+ ++L +
Sbjct: 174 VNWIDLTGQKCVNEPVKYQ 192
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 35.6 bits (81), Expect = 0.004
Identities = 18/98 (18%), Positives = 32/98 (32%), Gaps = 34/98 (34%)
Query: 62 YHLNLKENA--FTSFSESMLAWPELRTIDIAENPIECGCNILWLREMLVRRNTSAVFCNS 119
+HL E+ T F L + R +L + + R +++A N+
Sbjct: 479 HHLKNIEHPERMTLFRMVFL---DFR----------------FLEQKI-RHDSTA--WNA 516
Query: 120 PAPL--------KYKSLISLSAEDLGSRVRAL--FIYK 147
+ YK I + V A+ F+ K
Sbjct: 517 SGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPK 554
Score = 31.4 bits (70), Expect = 0.12
Identities = 14/85 (16%), Positives = 25/85 (29%), Gaps = 15/85 (17%)
Query: 77 SMLAWPELRTIDIAENPIECGCNILWLR-----------EMLVRRNTSAVFCNSPAPLKY 125
+ +A + + I WL EML + N + +
Sbjct: 164 TWVALDVCLSYKVQCKM---DFKIFWLNLKNCNSPETVLEMLQKLLYQID-PNWTSRSDH 219
Query: 126 KSLISLSAEDLGSRVRALFIYKNKK 150
S I L + + +R L K +
Sbjct: 220 SSNIKLRIHSIQAELRRLLKSKPYE 244
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell
WALL attached, leucine rich repeat; 1.5A {Listeria
monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A*
1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Length = 466
Score = 34.6 bits (80), Expect = 0.007
Identities = 24/96 (25%), Positives = 36/96 (37%), Gaps = 10/96 (10%)
Query: 3 KEVKGLSYLKRLEITGASN--LTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPN 60
K++ L+ L L +N ++ + + L L L N +I L GL
Sbjct: 234 KDIGTLASLTNLTDLDLANNQISNL--APLSGLTKLTELKLGAN---QISNISPLAGLTA 288
Query: 61 LYHLNLKENAFTSFSE-SMLAWPELRTIDIAENPIE 95
L +L L EN S S L L + + N I
Sbjct: 289 LTNLELNENQLEDISPISNL--KNLTYLTLYFNNIS 322
Score = 33.8 bits (78), Expect = 0.012
Identities = 18/94 (19%), Positives = 30/94 (31%), Gaps = 8/94 (8%)
Query: 3 KEVKGLSYLKRLEITGASN--LTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPN 60
+ L+ L L + L + ++ NL LTL N I + + L
Sbjct: 278 SNISPLAGLTALTNLELNENQLEDIS--PISNLKNLTYLTLYFN---NISDISPVSSLTK 332
Query: 61 LYHLNLKENAFTSFSESMLAWPELRTIDIAENPI 94
L L N + S + + + N I
Sbjct: 333 LQRLFFYNNKVSDVSS-LANLTNINWLSAGHNQI 365
Score = 33.8 bits (78), Expect = 0.013
Identities = 21/95 (22%), Positives = 39/95 (41%), Gaps = 9/95 (9%)
Query: 3 KEVKGLSYLKRLEITGASN-LTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNL 61
++ LS L L+ N +T ++ A+ LE L ++ N K+ + L L NL
Sbjct: 147 SDISALSGLTSLQQLSFGNQVTDLK--PLANLTTLERLDISSN---KVSDISVLAKLTNL 201
Query: 62 YHLNLKENAFTSFSE-SMLAWPELRTIDIAENPIE 95
L N + + +L L + + N ++
Sbjct: 202 ESLIATNNQISDITPLGIL--TNLDELSLNGNQLK 234
Score = 33.4 bits (77), Expect = 0.021
Identities = 16/61 (26%), Positives = 28/61 (45%), Gaps = 4/61 (6%)
Query: 35 NLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESMLAWPELRTIDIAENPI 94
NL+ L+LN N ++ + L L NL L+L N ++ + +L + + N I
Sbjct: 222 NLDELSLNGN---QLKDIGTLASLTNLTDLDLANNQISNL-APLSGLTKLTELKLGANQI 277
Query: 95 E 95
Sbjct: 278 S 278
Score = 31.1 bits (71), Expect = 0.11
Identities = 16/79 (20%), Positives = 34/79 (43%), Gaps = 7/79 (8%)
Query: 3 KEVKGLSYLKRLEITGASN--LTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPN 60
++ +S L +L+ N ++ V + A+ N+ L+ N +I + L L
Sbjct: 322 SDISPVSSLTKLQRLFFYNNKVSDVS--SLANLTNINWLSAGHN---QISDLTPLANLTR 376
Query: 61 LYHLNLKENAFTSFSESML 79
+ L L + A+T+ +
Sbjct: 377 ITQLGLNDQAWTNAPVNYK 395
Score = 29.5 bits (67), Expect = 0.35
Identities = 16/42 (38%), Positives = 19/42 (45%), Gaps = 3/42 (7%)
Query: 35 NLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSE 76
NL LTL N +I + D L L NL L L N + S
Sbjct: 113 NLTGLTLFNN---QITDIDPLKNLTNLNRLELSSNTISDISA 151
Score = 29.2 bits (66), Expect = 0.57
Identities = 9/62 (14%), Positives = 16/62 (25%), Gaps = 6/62 (9%)
Query: 35 NLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSE-SMLAWPELRTIDIAENP 93
L K + + + L + L S L L I+ + N
Sbjct: 25 EKMKTVLGKT---NVTDTVSQTDLDQVTTLQADRLGIKSIDGVEYL--NNLTQINFSNNQ 79
Query: 94 IE 95
+
Sbjct: 80 LT 81
Score = 26.9 bits (60), Expect = 3.2
Identities = 17/66 (25%), Positives = 26/66 (39%), Gaps = 5/66 (7%)
Query: 29 AFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESMLAWPELRTID 88
+ NL L L+ N I + AL GL +L L+ + L L +D
Sbjct: 129 PLKNLTNLNRLELSSN---TISDISALSGLTSLQQLSFGNQVTDLKPLANL--TTLERLD 183
Query: 89 IAENPI 94
I+ N +
Sbjct: 184 ISSNKV 189
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport
element (CTE), RNA recogni motif (RRM); HET: GTP CCC;
2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A
1fo1_A
Length = 267
Score = 33.8 bits (77), Expect = 0.011
Identities = 17/78 (21%), Positives = 31/78 (39%), Gaps = 4/78 (5%)
Query: 20 SNLTRVRKGAFADNLNLETLTLNKNPKLKIIE--EDALVGLPNLYHLNLKENAFTSFSE- 76
S + + + L +L L+ N +L ++ + PNL LNL N S E
Sbjct: 156 SCMAATLRIIEENIPELLSLNLSNN-RLYRLDDMSSIVQKAPNLKILNLSGNELKSEREL 214
Query: 77 SMLAWPELRTIDIAENPI 94
+ +L + + N +
Sbjct: 215 DKIKGLKLEELWLDGNSL 232
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain,
EF-hand domain; 1.8A {Listeria monocytogenes} SCOP:
b.1.18.15 c.10.2.1
Length = 308
Score = 33.5 bits (77), Expect = 0.015
Identities = 22/94 (23%), Positives = 37/94 (39%), Gaps = 8/94 (8%)
Query: 3 KEVKGLSYLKRLEITGASN--LTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPN 60
+ L+ L L+ N ++ + A+ L TL + N KI + L LPN
Sbjct: 142 TNISPLAGLTNLQYLSIGNAQVSDLT--PLANLSKLTTLKADDN---KISDISPLASLPN 196
Query: 61 LYHLNLKENAFTSFSESMLAWPELRTIDIAENPI 94
L ++LK N + S + L + + I
Sbjct: 197 LIEVHLKNNQISDVSP-LANTSNLFIVTLTNQTI 229
Score = 33.5 bits (77), Expect = 0.017
Identities = 24/94 (25%), Positives = 43/94 (45%), Gaps = 9/94 (9%)
Query: 3 KEVKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLY 62
+ GL +K L++ ++ +T V A NL+ L L+ N +I L GL NL
Sbjct: 101 SAIAGLQSIKTLDL-TSTQITDVT--PLAGLSNLQVLYLDLN---QITNISPLAGLTNLQ 154
Query: 63 HLNLKENAFTSFSE-SMLAWPELRTIDIAENPIE 95
+L++ + + + L +L T+ +N I
Sbjct: 155 YLSIGNAQVSDLTPLANL--SKLTTLKADDNKIS 186
Score = 32.7 bits (75), Expect = 0.028
Identities = 18/96 (18%), Positives = 37/96 (38%), Gaps = 10/96 (10%)
Query: 3 KEVKGLSYLKRLEITGASN--LTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPN 60
++G+ YL L + +T + + + L L+ N + A+ GL +
Sbjct: 54 TTIEGVQYLNNLIGLELKDNQITDLA--PLKNLTKITELELSGN---PLKNVSAIAGLQS 108
Query: 61 LYHLNLKENAFTSFSE-SMLAWPELRTIDIAENPIE 95
+ L+L T + + L L+ + + N I
Sbjct: 109 IKTLDLTSTQITDVTPLAGL--SNLQVLYLDLNQIT 142
Score = 29.3 bits (66), Expect = 0.43
Identities = 9/61 (14%), Positives = 21/61 (34%), Gaps = 4/61 (6%)
Query: 35 NLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESMLAWPELRTIDIAENPI 94
N + K+ + + L + L+ T+ E + L +++ +N I
Sbjct: 20 NAIKIAAGKS---NVTDTVTQADLDGITTLSAFGTGVTTI-EGVQYLNNLIGLELKDNQI 75
Query: 95 E 95
Sbjct: 76 T 76
Score = 28.9 bits (65), Expect = 0.53
Identities = 18/93 (19%), Positives = 34/93 (36%), Gaps = 4/93 (4%)
Query: 3 KEVKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLY 62
+ L A AD + TL+ + IE + L NL
Sbjct: 10 NVIFPDPALANAIKIAAGKSNVTDTVTQADLDGITTLSAFGT-GVTTIE--GVQYLNNLI 66
Query: 63 HLNLKENAFTSFSESMLAWPELRTIDIAENPIE 95
L LK+N T + + ++ ++++ NP++
Sbjct: 67 GLELKDNQITDLAP-LKNLTKITELELSGNPLK 98
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET:
NAG; 2.50A {Mus musculus}
Length = 312
Score = 33.3 bits (76), Expect = 0.019
Identities = 13/76 (17%), Positives = 26/76 (34%), Gaps = 2/76 (2%)
Query: 20 SNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESML 79
+ V A + L+ L L+ N + L LNL + +
Sbjct: 214 ETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLP 273
Query: 80 AWPELRTIDIAENPIE 95
+L +D++ N ++
Sbjct: 274 --AKLSVLDLSYNRLD 287
Score = 29.5 bits (66), Expect = 0.34
Identities = 21/92 (22%), Positives = 34/92 (36%), Gaps = 8/92 (8%)
Query: 8 LSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKL---KIIEEDALVGLPNLYHL 64
LK L I ++ L TL L+ NP+L +I + P L L
Sbjct: 148 KPGLKVLSIAQ-AHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVL 206
Query: 65 NLKENAFTSFSESMLAW----PELRTIDIAEN 92
L+ + S A +L+ +D++ N
Sbjct: 207 ALRNAGMETPSGVCSALAAARVQLQGLDLSHN 238
Score = 28.7 bits (64), Expect = 0.70
Identities = 11/68 (16%), Positives = 25/68 (36%), Gaps = 6/68 (8%)
Query: 33 NLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESMLA-----WPELRTI 87
L+ L++ + + + P L L+L +N + A +P L+ +
Sbjct: 148 KPGLKVLSIAQA-HSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVL 206
Query: 88 DIAENPIE 95
+ +E
Sbjct: 207 ALRNAGME 214
Score = 27.6 bits (61), Expect = 1.7
Identities = 10/65 (15%), Positives = 21/65 (32%), Gaps = 4/65 (6%)
Query: 35 NLETLTL--NKNPKLKIIEEDALVGLPNLYHLNLKENAFTSF-SESMLAWPE-LRTIDIA 90
L+ L L + L L+L N+ WP L +++++
Sbjct: 202 TLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLS 261
Query: 91 ENPIE 95
++
Sbjct: 262 FTGLK 266
Score = 25.6 bits (56), Expect = 7.5
Identities = 13/67 (19%), Positives = 23/67 (34%), Gaps = 5/67 (7%)
Query: 28 GAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESMLAWPELRTI 87
+ L +L L+ LK + + L L+L N S P++ +
Sbjct: 247 PSCDWPSQLNSLNLSFT-GLKQVPKGLP---AKLSVLDLSYNRLDRNP-SPDELPQVGNL 301
Query: 88 DIAENPI 94
+ NP
Sbjct: 302 SLKGNPF 308
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral
twinning, leucine-rich repeat protein, LRR, merohedral
twinning; 2.2A {Schizosaccharomyces pombe} SCOP:
c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Length = 386
Score = 33.1 bits (76), Expect = 0.020
Identities = 15/75 (20%), Positives = 35/75 (46%), Gaps = 9/75 (12%)
Query: 29 AFADNLNLETLTLNKN----PKLKIIEEDALVGLPNLYHLNLKENAFT-----SFSESML 79
F + L T+ + +N ++ + + L L L+L++N FT + + ++
Sbjct: 182 TFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALK 241
Query: 80 AWPELRTIDIAENPI 94
+WP LR + + + +
Sbjct: 242 SWPNLRELGLNDCLL 256
Score = 26.2 bits (58), Expect = 4.7
Identities = 14/80 (17%), Positives = 28/80 (35%), Gaps = 14/80 (17%)
Query: 29 AFADNLNLETLTLNKNPKLKIIEE---------DALVGLPNLYHLNLKENAFT-----SF 74
A +LE + ++ +E AL+ P L+ + L +NAF
Sbjct: 55 NIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPL 114
Query: 75 SESMLAWPELRTIDIAENPI 94
+ + L + + N +
Sbjct: 115 IDFLSKHTPLEHLYLHNNGL 134
>3jqh_A C-type lectin domain family 4 member M; DC-signr, four-helix
bundle, oligomerization domain, alternative splicing,
calcium, cell membrane; 2.20A {Homo sapiens}
Length = 167
Score = 32.8 bits (76), Expect = 0.022
Identities = 8/61 (13%), Positives = 16/61 (26%), Gaps = 2/61 (3%)
Query: 35 NLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESMLAWPELRTIDIAENPI 94
L +L ++ A+ LP L T ++ P+ +
Sbjct: 97 EKSKLQEIYQ-ELTELKA-AVGELPEKSKLQEIYQELTQLKAAVGELPDQSKQQQIYQEL 154
Query: 95 E 95
Sbjct: 155 T 155
Score = 30.5 bits (70), Expect = 0.13
Identities = 9/61 (14%), Positives = 17/61 (27%), Gaps = 2/61 (3%)
Query: 35 NLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESMLAWPELRTIDIAENPI 94
L +L ++ A+ LP L T ++ PE + +
Sbjct: 5 EKSKLQEIYQ-ELTRLKA-AVGELPEKSKLQEIYQELTRLKAAVGELPEKSKLQEIYQEL 62
Query: 95 E 95
Sbjct: 63 T 63
Score = 29.0 bits (66), Expect = 0.36
Identities = 9/61 (14%), Positives = 17/61 (27%), Gaps = 2/61 (3%)
Query: 35 NLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESMLAWPELRTIDIAENPI 94
L +L ++ A+ LP L T ++ PE + +
Sbjct: 28 EKSKLQEIYQ-ELTRLKA-AVGELPEKSKLQEIYQELTRLKAAVGELPEKSKLQEIYQEL 85
Query: 95 E 95
Sbjct: 86 T 86
Score = 25.9 bits (58), Expect = 4.7
Identities = 6/38 (15%), Positives = 10/38 (26%)
Query: 58 LPNLYHLNLKENAFTSFSESMLAWPELRTIDIAENPIE 95
LP L T ++ PE + +
Sbjct: 3 LPEKSKLQEIYQELTRLKAAVGELPEKSKLQEIYQELT 40
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold,
ligase; 2.80A {Shigella flexneri 2A}
Length = 571
Score = 33.0 bits (75), Expect = 0.026
Identities = 9/75 (12%), Positives = 26/75 (34%), Gaps = 2/75 (2%)
Query: 21 NLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESMLA 80
++ F+ E L + + + + L L +S +++
Sbjct: 21 TISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECLINQFSELQLNRLNLSSLPDNLP- 79
Query: 81 WPELRTIDIAENPIE 95
P++ ++I +N +
Sbjct: 80 -PQITVLEITQNALI 93
Score = 30.3 bits (68), Expect = 0.21
Identities = 15/115 (13%), Positives = 34/115 (29%), Gaps = 8/115 (6%)
Query: 35 NLETLTLNKNPKLKIIEED--ALVGLPNLY-HLNLKENAFTSFSESMLAWPELRTIDIAE 91
+LE L ++ N L+ + +EN T E++L+ TI + +
Sbjct: 181 SLEALDVSTN-LLESLPAVPVRNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILED 239
Query: 92 NPIE----CGCNILWLREMLVRRNTSAVFCNSPAPLKYKSLISLSAEDLGSRVRA 142
NP+ + + + ++ L ++
Sbjct: 240 NPLSSRIRESLSQQTAQPDYHGPRIYFSMSDGQQNTLHRPLADAVTAWFPENKQS 294
Score = 28.8 bits (64), Expect = 0.74
Identities = 14/61 (22%), Positives = 27/61 (44%), Gaps = 8/61 (13%)
Query: 35 NLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESMLAWPELRTIDIAENPI 94
LE + + N +L ++ E +L L+++ N T E L +D++ N +
Sbjct: 141 LLEYINADNN-QLTMLPEL----PTSLEVLSVRNNQLTFLPELP---ESLEALDVSTNLL 192
Query: 95 E 95
E
Sbjct: 193 E 193
Score = 28.0 bits (62), Expect = 1.2
Identities = 15/61 (24%), Positives = 23/61 (37%), Gaps = 8/61 (13%)
Query: 35 NLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESMLAWPELRTIDIAENPI 94
+LE L N +L + E +L HL++ N T E L I+ N +
Sbjct: 101 SLEYLDACDN-RLSTLPEL----PASLKHLDVDNNQLTMLPELP---ALLEYINADNNQL 152
Query: 95 E 95
Sbjct: 153 T 153
Score = 27.6 bits (61), Expect = 1.6
Identities = 11/55 (20%), Positives = 21/55 (38%), Gaps = 5/55 (9%)
Query: 35 NLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESMLAWPELRTIDI 89
+LE L++ N +L + E +L L++ N S + +I
Sbjct: 161 SLEVLSVRNN-QLTFLPE----LPESLEALDVSTNLLESLPAVPVRNHHSEETEI 210
Score = 27.6 bits (61), Expect = 1.8
Identities = 15/88 (17%), Positives = 29/88 (32%), Gaps = 7/88 (7%)
Query: 8 LSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLK 67
++ + G + V L LN+ L + ++ P + L +
Sbjct: 33 WDKWEKQALPGENRNEAVSLLKECLINQFSELQLNRL-NLSSLPDN---LPPQITVLEIT 88
Query: 68 ENAFTSFSESMLAWPELRTIDIAENPIE 95
+NA S E L +D +N +
Sbjct: 89 QNALISLPELP---ASLEYLDACDNRLS 113
Score = 27.6 bits (61), Expect = 2.0
Identities = 12/62 (19%), Positives = 24/62 (38%), Gaps = 8/62 (12%)
Query: 35 NLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESMLAWPELRTIDIAENPI 94
+L+ L ++ N +L ++ E L ++N N T E L + + N +
Sbjct: 121 SLKHLDVDNN-QLTMLPEL----PALLEYINADNNQLTMLPELP---TSLEVLSVRNNQL 172
Query: 95 EC 96
Sbjct: 173 TF 174
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest
center for structu genomics, MCSG, LRR, N- and
C-terminal helices; 2.00A {Xanthomonas campestris PV}
Length = 328
Score = 32.6 bits (75), Expect = 0.033
Identities = 15/69 (21%), Positives = 26/69 (37%), Gaps = 8/69 (11%)
Query: 35 NLETLTLNKNPKLKII--------EEDALVGLPNLYHLNLKENAFTSFSESMLAWPELRT 86
L L++ P+L + GL NL L L+ S S+ L++
Sbjct: 151 RLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKS 210
Query: 87 IDIAENPIE 95
+ I +P+
Sbjct: 211 LKIRNSPLS 219
Score = 31.1 bits (71), Expect = 0.094
Identities = 21/107 (19%), Positives = 41/107 (38%), Gaps = 16/107 (14%)
Query: 3 KEVKGLSYLKRLEITGASNLTRV-------RKGAFADNL-NLETLTLNKNPKLKIIEEDA 54
+ L+ L+ L I LT + L NL++L L ++ +
Sbjct: 144 ASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWT-GIRSLPAS- 201
Query: 55 LVGLPNLYHLNLKENAFTSFSESMLAWPELRTIDIAENPIECGCNIL 101
+ L NL L ++ + ++ ++ P+L +D+ GC L
Sbjct: 202 IANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDL------RGCTAL 242
Score = 29.5 bits (67), Expect = 0.37
Identities = 12/86 (13%), Positives = 23/86 (26%), Gaps = 1/86 (1%)
Query: 11 LKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLK-IIEEDALVGLPNLYHLNLKEN 69
L + + ++ R N N + LK + P L L+
Sbjct: 32 LSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRSV 91
Query: 70 AFTSFSESMLAWPELRTIDIAENPIE 95
F + L+ + I +
Sbjct: 92 PLPQFPDQAFRLSHLQHMTIDAAGLM 117
Score = 27.6 bits (62), Expect = 1.5
Identities = 12/59 (20%), Positives = 24/59 (40%), Gaps = 2/59 (3%)
Query: 35 NLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESMLAWPELRTIDIAENP 93
+L+ +T++ L + + + L L L N + S+ + LR + I P
Sbjct: 105 HLQHMTIDAA-GLMELPDT-MQQFAGLETLTLARNPLRALPASIASLNRLRELSIRACP 161
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis,
effector protein, virulence factor, toxin; 2.10A
{Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Length = 454
Score = 32.3 bits (74), Expect = 0.046
Identities = 14/61 (22%), Positives = 25/61 (40%), Gaps = 6/61 (9%)
Query: 35 NLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESMLAWPELRTIDIAENPI 94
LE L ++ N +L+ + E L L +++ N+ + P L I N +
Sbjct: 132 LLEYLGVSNN-QLEKLPE--LQNSSFLKIIDVDNNSLKKLPDLP---PSLEFIAAGNNQL 185
Query: 95 E 95
E
Sbjct: 186 E 186
Score = 31.9 bits (73), Expect = 0.059
Identities = 13/61 (21%), Positives = 26/61 (42%), Gaps = 6/61 (9%)
Query: 35 NLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESMLAWPELRTIDIAENPI 94
+LE++ N L+ + E L LP L + N + + P L +++ +N +
Sbjct: 216 SLESIVAGNN-ILEELPE--LQNLPFLTTIYADNNLLKTLPDLP---PSLEALNVRDNYL 269
Query: 95 E 95
Sbjct: 270 T 270
Score = 31.1 bits (71), Expect = 0.11
Identities = 14/61 (22%), Positives = 24/61 (39%), Gaps = 6/61 (9%)
Query: 35 NLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESMLAWPELRTIDIAENPI 94
+LE + N +L+ + E L LP L + N+ + L +I N +
Sbjct: 174 SLEFIAAGNN-QLEELPE--LQNLPFLTAIYADNNSLKKLPDLP---LSLESIVAGNNIL 227
Query: 95 E 95
E
Sbjct: 228 E 228
Score = 29.6 bits (67), Expect = 0.35
Identities = 12/61 (19%), Positives = 20/61 (32%), Gaps = 8/61 (13%)
Query: 35 NLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESMLAWPELRTIDIAENPI 94
NL L + N + + P+L LN+ N P L + + N +
Sbjct: 298 NLYYLNASSNEIRSLCDL-----PPSLEELNVSNNKLIELPALP---PRLERLIASFNHL 349
Query: 95 E 95
Sbjct: 350 A 350
Score = 28.4 bits (64), Expect = 0.98
Identities = 14/62 (22%), Positives = 22/62 (35%), Gaps = 8/62 (12%)
Query: 35 NLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESMLAWPELRTIDIAENPI 94
+LE L ++ N KL + P L L N E L+ + + NP+
Sbjct: 318 SLEELNVSNN-KLIELPAL----PPRLERLIASFNHLAEVPELP---QNLKQLHVEYNPL 369
Query: 95 EC 96
Sbjct: 370 RE 371
Score = 28.0 bits (63), Expect = 1.2
Identities = 15/61 (24%), Positives = 27/61 (44%), Gaps = 8/61 (13%)
Query: 35 NLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESMLAWPELRTIDIAENPI 94
+L L +++N + E PNLY+LN N S + P L ++++ N +
Sbjct: 278 SLTFLDVSENIFSGLSEL-----PPNLYYLNASSNEIRSLCDL---PPSLEELNVSNNKL 329
Query: 95 E 95
Sbjct: 330 I 330
Score = 27.3 bits (61), Expect = 2.3
Identities = 13/51 (25%), Positives = 21/51 (41%), Gaps = 5/51 (9%)
Query: 35 NLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESMLAWPELR 85
LE L + N L + E NL L+++ N F + + +LR
Sbjct: 338 RLERLIASFN-HLAEVPE----LPQNLKQLHVEYNPLREFPDIPESVEDLR 383
Score = 26.9 bits (60), Expect = 3.1
Identities = 12/62 (19%), Positives = 19/62 (30%), Gaps = 5/62 (8%)
Query: 33 NLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESMLAWPELRTIDIAEN 92
+ L LN L + E P+L L N+ T E + L +
Sbjct: 70 DRQAHELELNNL-GLSSLPEL----PPHLESLVASCNSLTELPELPQSLKSLLVDNNNLK 124
Query: 93 PI 94
+
Sbjct: 125 AL 126
Score = 26.9 bits (60), Expect = 3.3
Identities = 13/61 (21%), Positives = 23/61 (37%), Gaps = 8/61 (13%)
Query: 35 NLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESMLAWPELRTIDIAENPI 94
+LE+L + N L + E L +L N A + L + ++ N +
Sbjct: 92 HLESLVASCN-SLTELPE-LPQSLKSLLVDNNNLKALSDLPPL------LEYLGVSNNQL 143
Query: 95 E 95
E
Sbjct: 144 E 144
Score = 25.7 bits (57), Expect = 7.5
Identities = 16/61 (26%), Positives = 27/61 (44%), Gaps = 8/61 (13%)
Query: 35 NLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESMLAWPELRTIDIAENPI 94
L T+ + N LK + + P+L LN+++N T E L +D++EN
Sbjct: 238 FLTTIYADNN-LLKTLPD----LPPSLEALNVRDNYLTDLPELP---QSLTFLDVSENIF 289
Query: 95 E 95
Sbjct: 290 S 290
Score = 25.3 bits (56), Expect = 8.9
Identities = 12/61 (19%), Positives = 21/61 (34%), Gaps = 6/61 (9%)
Query: 35 NLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESMLAWPELRTIDIAENPI 94
L + + N LK + + +L + N E + P L TI N +
Sbjct: 196 FLTAIYADNN-SLKKLPD----LPLSLESIVAGNNILEELPE-LQNLPFLTTIYADNNLL 249
Query: 95 E 95
+
Sbjct: 250 K 250
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR,
immune system; 2.30A {Eptatretus burgeri}
Length = 177
Score = 30.3 bits (69), Expect = 0.16
Identities = 19/64 (29%), Positives = 29/64 (45%), Gaps = 6/64 (9%)
Query: 8 LSYLKRLEITGASN-LTRVRKGAFADNL-NLETLTLNKNPKLKIIEEDALVGLPNLYHLN 65
L+ L L + N L + G F D L L+ L L+ N +LK + + L +L +
Sbjct: 75 LTKLTILYL--HENKLQSLPNGVF-DKLTQLKELALDTN-QLKSVPDGIFDRLTSLQKIW 130
Query: 66 LKEN 69
L N
Sbjct: 131 LHTN 134
Score = 27.2 bits (61), Expect = 1.9
Identities = 14/52 (26%), Positives = 23/52 (44%), Gaps = 1/52 (1%)
Query: 22 LTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTS 73
L + G F L L+L++N +++ + + L L L L EN S
Sbjct: 40 LQSLPHGVFDKLTQLTKLSLSQN-QIQSLPDGVFDKLTKLTILYLHENKLQS 90
Score = 26.5 bits (59), Expect = 3.3
Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 3/39 (7%)
Query: 8 LSYLKRLEITGASNLTRVRKGAFADNL-NLETLTLNKNP 45
L+ LK L + + L V G F D L +L+ + L+ NP
Sbjct: 99 LTQLKELALDT-NQLKSVPDGIF-DRLTSLQKIWLHTNP 135
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR,
immune system; 1.50A {Eptatretus burgeri}
Length = 208
Score = 29.6 bits (67), Expect = 0.29
Identities = 15/49 (30%), Positives = 25/49 (51%), Gaps = 3/49 (6%)
Query: 22 LTRVRKGAFADNL-NLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKEN 69
L + G F D L L+ L L +N +LK + + L +L ++ L +N
Sbjct: 112 LQSLPDGVF-DKLTQLKDLRLYQN-QLKSVPDGVFDRLTSLQYIWLHDN 158
Score = 29.3 bits (66), Expect = 0.37
Identities = 30/143 (20%), Positives = 50/143 (34%), Gaps = 43/143 (30%)
Query: 6 KGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEE---DALVGL---- 58
L+ L +L + G L + G F +L L L+ N +L+ + D L L
Sbjct: 49 DELTSLTQLYLGGNK-LQSLPNGVFNKLTSLTYLNLSTN-QLQSLPNGVFDKLTQLKELA 106
Query: 59 -----------------PNLYHLNLKEN--------AFTSFSESMLAWPELRTIDIAENP 93
L L L +N F + L+ I + +NP
Sbjct: 107 LNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLT-------SLQYIWLHDNP 159
Query: 94 IECGCN-ILWLREMLVRRNTSAV 115
+C C I +L E + +++ V
Sbjct: 160 WDCTCPGIRYLSEWI-NKHSGVV 181
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder,
flagella, contractIle protein; NMR {Chlamydomonas
reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Length = 198
Score = 29.3 bits (66), Expect = 0.33
Identities = 23/95 (24%), Positives = 44/95 (46%), Gaps = 6/95 (6%)
Query: 3 KEVKGLSYLKRLEITG-ASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNL 61
+++ LS ++ L I NL + + A LE L ++ N ++ + + L NL
Sbjct: 61 EKISSLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYN-QIASLSG--IEKLVNL 117
Query: 62 YHLNLKENAFTSFSE--SMLAWPELRTIDIAENPI 94
L + N T++ E + A +L + +A NP+
Sbjct: 118 RVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPL 152
Score = 28.1 bits (63), Expect = 0.79
Identities = 17/60 (28%), Positives = 23/60 (38%), Gaps = 2/60 (3%)
Query: 35 NLETLTLNKNPKLKIIEE-DALVGLPNLYHLNLKENAFTSFSESMLAWPELRTIDIAENP 93
NL L ++ N K+ E D L L L L L N + + A E R + P
Sbjct: 116 NLRVLYMSNN-KITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLP 174
Score = 26.2 bits (58), Expect = 3.8
Identities = 16/77 (20%), Positives = 28/77 (36%), Gaps = 3/77 (3%)
Query: 32 DNLNLETLTL-NKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESMLAWPELRTIDIA 90
E + L P ++ ++ L L HL L N S+ LR + +
Sbjct: 21 VATEAEKVELHGMIPPIEKMDAT-LSTLKACKHLALSTNNIEKI-SSLSGMENLRILSLG 78
Query: 91 ENPIECGCNILWLREML 107
N I+ N+ + + L
Sbjct: 79 RNLIKKIENLDAVADTL 95
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein
binding, plasma; 1.70A {Listeria monocytogenes} PDB:
3rfj_A
Length = 272
Score = 29.6 bits (67), Expect = 0.34
Identities = 31/142 (21%), Positives = 49/142 (34%), Gaps = 43/142 (30%)
Query: 7 GLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEE---DALVGLPNLY- 62
L+ LK L + L + G F NL L L N +L+ + + D L L L
Sbjct: 107 KLTNLKELVLVENQ-LQSLPDGVFDKLTNLTYLNLAHN-QLQSLPKGVFDKLTNLTELDL 164
Query: 63 --------------------HLNLKEN--------AFTSFSESMLAWPELRTIDIAENPI 94
L L +N F + L+ I + +NP
Sbjct: 165 SYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLT-------SLQYIWLHDNPW 217
Query: 95 ECGCN-ILWLREMLVRRNTSAV 115
+C C I +L E + +++ V
Sbjct: 218 DCTCPGIRYLSEWI-NKHSGVV 238
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte
receptors, VLR, leucine-rich repeat, LRR adaptive
immunity, immune system; HET: DR2; 1.67A {Petromyzon
marinus}
Length = 229
Score = 29.3 bits (66), Expect = 0.36
Identities = 28/134 (20%), Positives = 44/134 (32%), Gaps = 28/134 (20%)
Query: 7 GLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNL 66
L LK L + + L + G F L L L N +L ++ L +L L +
Sbjct: 62 SLINLKELYLGS-NQLGALPVGVFDSLTQLTVLDLGTN-QLTVLPSAVFDRLVHLKELFM 119
Query: 67 KENAFTS----------------FSESMLAWPE--------LRTIDIAENPIECGCN-IL 101
N T + + P L + NP +C C I+
Sbjct: 120 CCNKLTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCECRDIM 179
Query: 102 WLREMLVRRNTSAV 115
+LR + +TS
Sbjct: 180 YLRNWV-ADHTSIA 192
Score = 28.5 bits (64), Expect = 0.81
Identities = 13/42 (30%), Positives = 21/42 (50%), Gaps = 3/42 (7%)
Query: 5 VKGLSYLKRLEITGASNLTRVRKGAFADNL-NLETLTLNKNP 45
++ L++L L + + L + GAF D L +L L NP
Sbjct: 131 IERLTHLTHLALD-QNQLKSIPHGAF-DRLSSLTHAYLFGNP 170
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich
RE receptor-like kinases, leucine-rich repeat; HET: NAG
BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A*
3rj0_A*
Length = 768
Score = 29.1 bits (66), Expect = 0.49
Identities = 12/62 (19%), Positives = 25/62 (40%), Gaps = 4/62 (6%)
Query: 35 NLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESMLAW----PELRTIDIA 90
L+ L ++ N + + L +L L+L N+ + + EL+ + I+
Sbjct: 127 GLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAIS 186
Query: 91 EN 92
N
Sbjct: 187 GN 188
Score = 28.0 bits (63), Expect = 1.3
Identities = 9/42 (21%), Positives = 15/42 (35%), Gaps = 1/42 (2%)
Query: 55 LVGLPNLYHLNLKENAFT-SFSESMLAWPELRTIDIAENPIE 95
L L L L L N + ++ L T+ + N +
Sbjct: 438 LGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLT 479
Score = 27.6 bits (62), Expect = 1.7
Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 4/61 (6%)
Query: 35 NLETLTLNKNPKLK-IIEEDALVGLPNLYHLNLKENAFT-SFSESML-AWPELRTIDIAE 91
LE+L L+ N + D L+ + L L+L N F+ ES+ L T+D++
Sbjct: 319 LLESLALSSN-NFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSS 377
Query: 92 N 92
N
Sbjct: 378 N 378
Score = 27.6 bits (62), Expect = 2.0
Identities = 8/40 (20%), Positives = 15/40 (37%)
Query: 53 DALVGLPNLYHLNLKENAFTSFSESMLAWPELRTIDIAEN 92
+L+ L L L L + L ++D++ N
Sbjct: 71 SSLLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRN 110
Score = 27.6 bits (62), Expect = 2.1
Identities = 13/60 (21%), Positives = 25/60 (41%), Gaps = 3/60 (5%)
Query: 35 NLETLTLNKNPKLK-IIEEDALVGLPNLYHLNLKENAFT-SFSESMLAWPELRTIDIAEN 92
+L+ L+L +N K I + L L+L N F + + L ++ ++ N
Sbjct: 270 SLQYLSLAEN-KFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSN 328
Score = 27.2 bits (61), Expect = 2.4
Identities = 10/36 (27%), Positives = 16/36 (44%), Gaps = 1/36 (2%)
Query: 58 LPNLYHLNLKENAFT-SFSESMLAWPELRTIDIAEN 92
L NL L L N+F+ + + L +D+ N
Sbjct: 513 LENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTN 548
Score = 26.8 bits (60), Expect = 3.3
Identities = 15/65 (23%), Positives = 23/65 (35%), Gaps = 14/65 (21%)
Query: 35 NLETLTLNKN------PKLKIIEEDALVGLPNLYHLNLKENAFT-SFSESMLAWPELRTI 87
LETL L+ N P L NL ++L N T + + L +
Sbjct: 467 TLETLILDFNDLTGEIPS-------GLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAIL 519
Query: 88 DIAEN 92
++ N
Sbjct: 520 KLSNN 524
Score = 25.6 bits (57), Expect = 8.7
Identities = 14/67 (20%), Positives = 25/67 (37%), Gaps = 3/67 (4%)
Query: 29 AFADNLNLETLTLNKNP-KLKIIEEDALVGLPNLYHLNLKENAFTSF--SESMLAWPELR 85
F + +L +L L++N + +L L LN+ N L L
Sbjct: 95 GFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLE 154
Query: 86 TIDIAEN 92
+D++ N
Sbjct: 155 VLDLSAN 161
Score = 25.6 bits (57), Expect = 9.2
Identities = 14/62 (22%), Positives = 23/62 (37%), Gaps = 7/62 (11%)
Query: 35 NLETLTLNKNPKL--KIIEEDALVG-LPNLYHLNLKENAFT-SFSESMLAWPELRTIDIA 90
+LE L L+ N + + L L HL + N + S L +D++
Sbjct: 152 SLEVLDLSAN-SISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRC--VNLEFLDVS 208
Query: 91 EN 92
N
Sbjct: 209 SN 210
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain,
leucine rich repeats, BFR43, structural genomics, PSI-2;
1.95A {Bacteroides fragilis}
Length = 362
Score = 29.2 bits (64), Expect = 0.53
Identities = 24/100 (24%), Positives = 36/100 (36%), Gaps = 13/100 (13%)
Query: 8 LSYLKRLEI-TGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDA--------LVGL 58
LK LEI +G + V +D NLE L L + + D
Sbjct: 192 RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRF 251
Query: 59 PNLYHLNLKENAFTSFSESMLA----WPELRTIDIAENPI 94
PNL L + + + M P+L T+DI+ +
Sbjct: 252 PNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVL 291
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 29.2 bits (65), Expect = 0.58
Identities = 17/88 (19%), Positives = 35/88 (39%), Gaps = 18/88 (20%)
Query: 64 LNLKENAFTS-FSESMLAWPELRTIDI----AENPIECGCNILWLREMLVRRN--TSAVF 116
LNL F + + L DI A+ E ++ +E++ +N T+ +
Sbjct: 84 LNLCLTEFENCY---------LEGNDIHALAAKLLQENDTTLVKTKELI--KNYITARIM 132
Query: 117 CNSPAPLKYKSLISLSAEDLGSRVRALF 144
P K S + + + +++ A+F
Sbjct: 133 AKRPFDKKSNSALFRAVGEGNAQLVAIF 160
Score = 28.5 bits (63), Expect = 1.2
Identities = 12/72 (16%), Positives = 20/72 (27%), Gaps = 30/72 (41%)
Query: 81 WPELRTI--------------------DIAENPIEC------GCNIL-WLREMLVRRNTS 113
+ ELR + ++ ++ G NIL WL +
Sbjct: 170 FEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKD 229
Query: 114 AVFCNSPA--PL 123
+ P PL
Sbjct: 230 -YLLSIPISCPL 240
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein,
BIG3 domain, LRR domain, STRU genomics; 2.05A
{Bacteroides ovatus} PDB: 4fd0_A
Length = 401
Score = 28.5 bits (64), Expect = 0.76
Identities = 11/70 (15%), Positives = 26/70 (37%), Gaps = 3/70 (4%)
Query: 20 SNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESML 79
L + AF ++ ++ + L+ ++ED NL +L + T S
Sbjct: 144 EGLKSIGDMAFFNS-TVQEIVFPST--LEQLKEDIFYYCYNLKKADLSKTKITKLPASTF 200
Query: 80 AWPELRTIDI 89
+ + + +
Sbjct: 201 VYAGIEEVLL 210
Score = 27.4 bits (61), Expect = 2.2
Identities = 12/87 (13%), Positives = 26/87 (29%), Gaps = 15/87 (17%)
Query: 20 SNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVG-------LPNLYHLNLKENAFT 72
++ + +G N + LT+ N + I A + + E +
Sbjct: 309 ESIRILGQGLLGGNRKVTQLTIPAN--VTQINFSAFNNTGIKEVKVEGTTPPQVFEKVWY 366
Query: 73 SFSESMLAWPELRTIDIAENPIECGCN 99
F + + I + +E N
Sbjct: 367 GFPDD------ITVIRVPAESVEKYKN 387
Score = 27.0 bits (60), Expect = 2.5
Identities = 11/54 (20%), Positives = 19/54 (35%), Gaps = 4/54 (7%)
Query: 20 SNLTRVRKGAFADNLNLETLTLNKN----PKLKIIEEDALVGLPNLYHLNLKEN 69
+ +T + AF L +T + +I L G P L + E+
Sbjct: 257 NGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPES 310
Score = 26.6 bits (59), Expect = 4.0
Identities = 10/40 (25%), Positives = 18/40 (45%), Gaps = 1/40 (2%)
Query: 15 EITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDA 54
EI S L ++++ F NL+ L+K K+ +
Sbjct: 161 EIVFPSTLEQLKEDIFYYCYNLKKADLSKT-KITKLPAST 199
Score = 26.6 bits (59), Expect = 4.1
Identities = 9/40 (22%), Positives = 18/40 (45%), Gaps = 2/40 (5%)
Query: 15 EITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDA 54
E+ L + AF L+T+ + +N + I ++A
Sbjct: 207 EVLLPVTLKEIGSQAFLKTSQLKTIEIPEN--VSTIGQEA 244
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed
beta-alpha superhelix, leucine-rich repeat structural
genomics; HET: MSE PG4; 1.99A {Bacteroides
thetaiotaomicron}
Length = 329
Score = 28.2 bits (63), Expect = 1.1
Identities = 15/64 (23%), Positives = 25/64 (39%), Gaps = 2/64 (3%)
Query: 6 KGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLN 65
G Y+ A + V G LE + L++ +K IE+ A G NL
Sbjct: 73 NGKFYIYMANFVPAYAFSNVVNGVTKGKQTLEKVILSEK--IKNIEDAAFKGCDNLKICQ 130
Query: 66 LKEN 69
+++
Sbjct: 131 IRKK 134
Score = 27.8 bits (62), Expect = 1.2
Identities = 13/44 (29%), Positives = 19/44 (43%), Gaps = 3/44 (6%)
Query: 11 LKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDA 54
L L+I+ +N T + FA L + L N LK I +
Sbjct: 228 LVSLDISK-TNATTIPDFTFAQKKYLLKIKLPHN--LKTIGQRV 268
>3dww_A Prostaglandin E synthase; membrane protein, four helix bundle,
isomerase, membrane, transmembrane; HET: GSH; 3.50A
{Homo sapiens}
Length = 158
Score = 27.3 bits (60), Expect = 1.8
Identities = 16/63 (25%), Positives = 23/63 (36%), Gaps = 5/63 (7%)
Query: 7 GLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNL 66
L +K + + R+RK AFA N E + P+ + D V H N
Sbjct: 27 TLLVIKMYVVAIITGQVRLRKKAFA---NPEDALRHGGPQYCRSDPD--VERCLRAHRND 81
Query: 67 KEN 69
E
Sbjct: 82 MET 84
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY,
crystallography, immune system; 1.55A {Petromyzon
marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Length = 170
Score = 26.8 bits (60), Expect = 2.5
Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 5/40 (12%)
Query: 8 LSYLKRLEITGASN-LTRVRKGAFADNL-NLETLTLNKNP 45
L+ L +L + N L + +GAF DNL +L + L NP
Sbjct: 77 LTQLTQLSLN--DNQLKSIPRGAF-DNLKSLTHIWLLNNP 113
>2i4k_A Sorting nexin-1, SNX1; 3-stranded beta sheet, 3 alpha helices,
proline rich loop, protein transport; NMR {Homo sapiens}
Length = 128
Score = 26.3 bits (58), Expect = 2.8
Identities = 10/45 (22%), Positives = 16/45 (35%)
Query: 101 LWLREMLVRRNTSAVFCNSPAPLKYKSLISLSAEDLGSRVRALFI 145
L L E L +++ F P P K ++ A F+
Sbjct: 50 LGLYEKLSEKHSQNGFIVPPPPEKSLIGMTKVKVGKEDSSSAEFL 94
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG;
1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Length = 313
Score = 26.7 bits (60), Expect = 3.1
Identities = 23/96 (23%), Positives = 32/96 (33%), Gaps = 22/96 (22%)
Query: 8 LSYLKRLEITGASNLTRVRKGAFADNL----NLETLTLNKN------PKLKIIEEDALVG 57
L YL L I G +NL G + L L + P D L
Sbjct: 75 LPYLNFLYIGGINNLV----GPIPPAIAKLTQLHYLYITHTNVSGAIP-------DFLSQ 123
Query: 58 LPNLYHLNLKENAFT-SFSESMLAWPELRTIDIAEN 92
+ L L+ NA + + S+ + P L I N
Sbjct: 124 IKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGN 159
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich
repeat, LRR, system; 2.10A {Petromyzon marinus}
Length = 174
Score = 26.4 bits (59), Expect = 3.4
Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 5/40 (12%)
Query: 8 LSYLKRLEITGASN-LTRVRKGAFADNL-NLETLTLNKNP 45
L+ L +L++ N L + +GAF DNL +L + L NP
Sbjct: 80 LTQLTQLDLN--DNHLKSIPRGAF-DNLKSLTHIYLYNNP 116
>3n5n_X A/G-specific adenine DNA glycosylase; alpha-helices,
helix-hairpin-helix motif, iron-sulfur cluste
hydrolase; 2.30A {Homo sapiens}
Length = 287
Score = 25.7 bits (57), Expect = 6.6
Identities = 8/23 (34%), Positives = 12/23 (52%)
Query: 59 PNLYHLNLKENAFTSFSESMLAW 81
+ YHL T+F S+L+W
Sbjct: 3 VSSYHLFRDVAEVTAFRGSLLSW 25
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.134 0.385
Gapped
Lambda K H
0.267 0.0811 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,194,701
Number of extensions: 121244
Number of successful extensions: 1120
Number of sequences better than 10.0: 1
Number of HSP's gapped: 575
Number of HSP's successfully gapped: 402
Length of query: 150
Length of database: 6,701,793
Length adjustment: 85
Effective length of query: 65
Effective length of database: 4,328,508
Effective search space: 281353020
Effective search space used: 281353020
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (24.0 bits)