RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy16571
(150 letters)
>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 284
Score = 60.2 bits (144), Expect = 3e-12
Identities = 33/143 (23%), Positives = 49/143 (34%), Gaps = 28/143 (19%)
Query: 21 NLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESML- 79
L + F D NL L L+ N ++ + E A GL +L L L +N
Sbjct: 140 ALQALPDDTFRDLGNLTHLFLHGN-RISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFR 198
Query: 80 ------------------------AWPELRTIDIAENPIECGCNILWLREMLVRRNTSA- 114
L+ + + +NP C C L L + S+
Sbjct: 199 DLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLWAWLQKFRGSSS 258
Query: 115 -VFCNSPAPLKYKSLISLSAEDL 136
V C+ P L + L L+A DL
Sbjct: 259 EVPCSLPQRLAGRDLKRLAANDL 281
>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of
glycoprotein Ib alpha {Human (Homo sapiens) [TaxId:
9606]}
Length = 266
Score = 56.6 bits (135), Expect = 5e-11
Identities = 19/75 (25%), Positives = 28/75 (37%)
Query: 50 IEEDALVGLPNLYHLNLKENAFTSFSESMLAWPELRTIDIAENPIECGCNILWLREMLVR 109
+ L GL NL L L+EN+ + + L + NP C C IL+ R L
Sbjct: 163 LPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWLCNCEILYFRRWLQD 222
Query: 110 RNTSAVFCNSPAPLK 124
+ +K
Sbjct: 223 NAENVYVWKQGVDVK 237
Score = 27.8 bits (60), Expect = 0.53
Identities = 12/46 (26%), Positives = 17/46 (36%), Gaps = 4/46 (8%)
Query: 21 NLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNL 66
NLT + + L L++N L L+ L LNL
Sbjct: 21 NLTALPPDLPK---DTTILHLSEN-LLYTFSLATLMPYTRLTQLNL 62
Score = 26.2 bits (56), Expect = 1.5
Identities = 9/49 (18%), Positives = 19/49 (38%), Gaps = 1/49 (2%)
Query: 59 PNLYHLNLKENAFTSFSESMLA-WPELRTIDIAENPIECGCNILWLREM 106
+ L+L EN +FS + L + L +++ + L +
Sbjct: 31 KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVL 79
>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster)
[TaxId: 7227]}
Length = 192
Score = 47.9 bits (112), Expect = 4e-08
Identities = 23/96 (23%), Positives = 42/96 (43%), Gaps = 3/96 (3%)
Query: 44 NPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESMLA-WPELRTIDIAENPIECGCNILW 102
K+K I +GL L LNL +N + L ++++A NP C C++ W
Sbjct: 87 ENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAW 146
Query: 103 LREMLVRRN--TSAVFCNSPAPLKYKSLISLSAEDL 136
E L +++ A C +P+ ++ + L +
Sbjct: 147 FAEWLRKKSLNGGAARCGAPSKVRDVQIKDLPHSEF 182
>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor
receptor, N-terminal domain {Human (Homo sapiens)
[TaxId: 9606]}
Length = 156
Score = 42.9 bits (99), Expect = 2e-06
Identities = 21/112 (18%), Positives = 36/112 (32%), Gaps = 28/112 (25%)
Query: 41 LNKNPKLKIIEEDALVGLPNLYHLNLK------------------------ENAFTSFSE 76
+ L+ +E L GL L +L + NA S S
Sbjct: 38 IENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSW 97
Query: 77 SMLAWPELRTIDIAENPIECGCNILWLREMLVRR----NTSAVFCNSPAPLK 124
+ L+ + ++ NP+ C C + WL+ + C+ PL
Sbjct: 98 KTVQGLSLQELVLSGNPLHCSCALRWLQRWEEEGLGGVPEQKLQCHGQGPLA 149
>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}
Length = 305
Score = 39.3 bits (90), Expect = 7e-05
Identities = 27/131 (20%), Positives = 48/131 (36%), Gaps = 3/131 (2%)
Query: 9 SYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKE 68
L++ + +T ++ G F + NL TL L N K+ I A L L L L +
Sbjct: 31 PDTALLDLQN-NKITEIKDGDFKNLKNLHTLILI-NNKISKISPGAFAPLVKLERLYLSK 88
Query: 69 NAFTSFSESMLAWP-ELRTIDIAENPIECGCNILWLREMLVRRNTSAVFCNSPAPLKYKS 127
N E M ELR + + + ++V T+ + + ++
Sbjct: 89 NQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQG 148
Query: 128 LISLSAEDLGS 138
+ LS +
Sbjct: 149 MKKLSYIRIAD 159
Score = 25.0 bits (53), Expect = 4.5
Identities = 7/63 (11%), Positives = 20/63 (31%), Gaps = 7/63 (11%)
Query: 29 AFADNLNLETLTLNKNPKLKIIEEDALVG------LPNLYHLNLKENAFTSFSESMLAWP 82
AD+ ++ + L+ N + I + + ++L N + +
Sbjct: 237 GLADHKYIQVVYLHNN-NISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFR 295
Query: 83 ELR 85
+
Sbjct: 296 CVY 298
>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia
pestis [TaxId: 632]}
Length = 353
Score = 36.0 bits (81), Expect = 0.001
Identities = 14/62 (22%), Positives = 22/62 (35%), Gaps = 8/62 (12%)
Query: 35 NLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESMLAWPELRTIDIAENPI 94
+LE L ++ N KL + P L L N E L+ + + NP+
Sbjct: 285 SLEELNVSNN-KLIELPA----LPPRLERLIASFNHLAEVPELP---QNLKQLHVEYNPL 336
Query: 95 EC 96
Sbjct: 337 RE 338
Score = 29.4 bits (64), Expect = 0.14
Identities = 13/51 (25%), Positives = 21/51 (41%), Gaps = 5/51 (9%)
Query: 35 NLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESMLAWPELR 85
LE L + N L + E NL L+++ N F + + +LR
Sbjct: 305 RLERLIASFN-HLAEVPEL----PQNLKQLHVEYNPLREFPDIPESVEDLR 350
Score = 28.6 bits (62), Expect = 0.29
Identities = 16/84 (19%), Positives = 26/84 (30%), Gaps = 11/84 (13%)
Query: 35 NLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESMLAWPELRTIDIAENPI 94
L LN L + E P+L L N+ T E L+++ + N +
Sbjct: 39 QAHELELNNL-GLSSLPEL----PPHLESLVASCNSLTELPELP---QSLKSLLVDNNNL 90
Query: 95 ECGCNILWLREMLVRRNTSAVFCN 118
+ L +L S
Sbjct: 91 ---KALSDLPPLLEYLGVSNNQLE 111
Score = 27.5 bits (59), Expect = 0.65
Identities = 8/38 (21%), Positives = 13/38 (34%), Gaps = 3/38 (7%)
Query: 58 LPNLYHLNLKENAFTSFSESMLAWPELRTIDIAENPIE 95
P+L LN+ N P L + + N +
Sbjct: 283 PPSLEELNVSNNKLIELPAL---PPRLERLIASFNHLA 317
>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo
sapiens) [TaxId: 9606]}
Length = 460
Score = 35.3 bits (79), Expect = 0.002
Identities = 10/67 (14%), Positives = 25/67 (37%), Gaps = 5/67 (7%)
Query: 33 NLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFT-----SFSESMLAWPELRTI 87
+L++++L + + L L + L + T S ++ P L +
Sbjct: 1 SLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAEL 60
Query: 88 DIAENPI 94
++ N +
Sbjct: 61 NLRSNEL 67
Score = 26.9 bits (57), Expect = 1.1
Identities = 11/80 (13%), Positives = 20/80 (25%), Gaps = 15/80 (18%)
Query: 27 KGAFADNLNLETLTLNKNPKLKIIEE------DALVGLPNLYHLNLKENAFTSFSESMLA 80
+G L L L + + L+ +L L+L N L
Sbjct: 362 QGLGQPGSVLRVLWLADC---DVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLV 418
Query: 81 ------WPELRTIDIAENPI 94
L + + +
Sbjct: 419 ESVRQPGCLLEQLVLYDIYW 438
>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP
{Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}
Length = 313
Score = 33.6 bits (75), Expect = 0.006
Identities = 11/54 (20%), Positives = 15/54 (27%)
Query: 44 NPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESMLAWPELRTIDIAENPIECG 97
N ++ L L L+ LN+ N A N CG
Sbjct: 253 NNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCG 306
>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain
{Fission yeast (Schizosaccharomyces pombe) [TaxId:
4896]}
Length = 344
Score = 32.5 bits (72), Expect = 0.012
Identities = 15/79 (18%), Positives = 31/79 (39%), Gaps = 4/79 (5%)
Query: 10 YLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNP----KLKIIEEDALVGLPNLYHLN 65
L ++ V + +N+ L+TL L N ++ ++ +P+L L
Sbjct: 249 GLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLE 308
Query: 66 LKENAFTSFSESMLAWPEL 84
L N F+ + + E+
Sbjct: 309 LNGNRFSEEDDVVDEIREV 327
>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor
{Human (Homo sapiens) [TaxId: 9606]}
Length = 242
Score = 32.2 bits (71), Expect = 0.015
Identities = 5/39 (12%), Positives = 12/39 (30%), Gaps = 1/39 (2%)
Query: 28 GAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNL 66
F L +++ ++ + L L L +
Sbjct: 195 DVFHGASGPVILDISRT-RIHSLPSYGLENLKKLRARST 232
Score = 31.8 bits (70), Expect = 0.023
Identities = 7/41 (17%), Positives = 11/41 (26%), Gaps = 1/41 (2%)
Query: 50 IEEDALVGLPNLYHLNLKENAFTSFSESMLA-WPELRTIDI 89
+ D G L++ S L +LR
Sbjct: 192 LPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARST 232
Score = 28.0 bits (60), Expect = 0.42
Identities = 8/46 (17%), Positives = 16/46 (34%), Gaps = 1/46 (2%)
Query: 6 KGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIE 51
G S L+I+ + + + + L + KL +E
Sbjct: 198 HGASGPVILDISR-TRIHSLPSYGLENLKKLRARSTYNLKKLPTLE 242
>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes
[TaxId: 1639]}
Length = 384
Score = 31.9 bits (71), Expect = 0.026
Identities = 16/67 (23%), Positives = 29/67 (43%), Gaps = 6/67 (8%)
Query: 4 EVKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYH 63
V L+ L+RL + ++ V + A+ N+ L+ N +I + L L +
Sbjct: 324 PVSSLTKLQRLFFAN-NKVSDVS--SLANLTNINWLSAGHN---QISDLTPLANLTRITQ 377
Query: 64 LNLKENA 70
L L + A
Sbjct: 378 LGLNDQA 384
Score = 31.5 bits (70), Expect = 0.028
Identities = 9/58 (15%), Positives = 22/58 (37%), Gaps = 4/58 (6%)
Query: 35 NLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESMLAWPELRTIDIAEN 92
L+ L N K+ + +L L N+ L+ N + + + + + + +
Sbjct: 330 KLQRLFFANN---KVSDVSSLANLTNINWLSAGHNQISDLTP-LANLTRITQLGLNDQ 383
Score = 31.5 bits (70), Expect = 0.031
Identities = 15/61 (24%), Positives = 21/61 (34%), Gaps = 4/61 (6%)
Query: 35 NLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESMLAWPELRTIDIAENPI 94
NL LTL N I + + L L L N + S S+ + + N I
Sbjct: 308 NLTYLTLYFN---NISDISPVSSLTKLQRLFFANNKVSDVS-SLANLTNINWLSAGHNQI 363
Query: 95 E 95
Sbjct: 364 S 364
Score = 26.9 bits (58), Expect = 1.1
Identities = 10/41 (24%), Positives = 16/41 (39%), Gaps = 3/41 (7%)
Query: 35 NLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFS 75
+ TL ++ I D + L NL +N N T +
Sbjct: 45 QVTTLQADRL---GIKSIDGVEYLNNLTQINFSNNQLTDIT 82
Score = 24.6 bits (52), Expect = 5.9
Identities = 10/66 (15%), Positives = 19/66 (28%), Gaps = 2/66 (3%)
Query: 30 FADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESMLAWPELRTIDI 89
F D L K + + + L + L S + + L I+
Sbjct: 16 FTDT-ALAEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSI-DGVEYLNNLTQINF 73
Query: 90 AENPIE 95
+ N +
Sbjct: 74 SNNQLT 79
>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase
alpha-subunit, C-terminal domain {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 124
Score = 28.1 bits (62), Expect = 0.22
Identities = 19/101 (18%), Positives = 34/101 (33%), Gaps = 3/101 (2%)
Query: 38 TLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESMLAWPELRTIDIAENPIECG 97
L L L ++ L L + HL+L N + ++ A L + ++N +E
Sbjct: 2 VLHLAHK-DLTVLCH--LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENV 58
Query: 98 CNILWLREMLVRRNTSAVFCNSPAPLKYKSLISLSAEDLGS 138
+ L + + S A S L +L
Sbjct: 59 DGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQG 99
Score = 27.8 bits (61), Expect = 0.34
Identities = 19/70 (27%), Positives = 28/70 (40%)
Query: 7 GLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNL 66
L+ L+ LE+ AS+ A+ L+ L L N + LV P L LNL
Sbjct: 38 ALAALRCLEVLQASDNALENVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNL 97
Query: 67 KENAFTSFSE 76
+ N+
Sbjct: 98 QGNSLCQEEG 107
>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo
sapiens) [TaxId: 9606]}
Length = 162
Score = 28.6 bits (63), Expect = 0.23
Identities = 10/81 (12%), Positives = 28/81 (34%), Gaps = 3/81 (3%)
Query: 27 KGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESMLAWPELRT 86
K + + L+ + + LV LN + + + PEL +
Sbjct: 13 KLIMSKRYDGSQQALDLK---GLRSDPDLVAQNIDVVLNRRSSMAATLRIIEENIPELLS 69
Query: 87 IDIAENPIECGCNILWLREML 107
++++ N + ++ + +
Sbjct: 70 LNLSNNRLYRLDDMSSIVQKA 90
Score = 27.5 bits (60), Expect = 0.45
Identities = 16/77 (20%), Positives = 27/77 (35%), Gaps = 2/77 (2%)
Query: 20 SNLTRVRKGAFADNLNLETLTL-NKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSE-S 77
S++ + + L +L L N + PNL LNL N S E
Sbjct: 51 SSMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELD 110
Query: 78 MLAWPELRTIDIAENPI 94
+ +L + + N +
Sbjct: 111 KIKGLKLEELWLDGNSL 127
>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes
[TaxId: 1639]}
Length = 227
Score = 28.5 bits (62), Expect = 0.25
Identities = 10/72 (13%), Positives = 23/72 (31%), Gaps = 1/72 (1%)
Query: 35 NLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESMLAWPELRTIDIAENPI 94
L K + + L + L+ T+ E + L +++ +N I
Sbjct: 17 ALANAIKIAAGKSNVTDTVTQADLDGITTLSAFGTGVTTI-EGVQYLNNLIGLELKDNQI 75
Query: 95 ECGCNILWLREM 106
+ L ++
Sbjct: 76 TDLAPLKNLTKI 87
Score = 28.5 bits (62), Expect = 0.27
Identities = 17/60 (28%), Positives = 26/60 (43%), Gaps = 4/60 (6%)
Query: 30 FADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESMLAWPELRTIDI 89
A+ L TL + N KI + L LPNL ++LK N + S + L + +
Sbjct: 169 LANLSKLTTLKADDN---KISDISPLASLPNLIEVHLKNNQISDVS-PLANTSNLFIVTL 224
>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 162
Score = 28.0 bits (61), Expect = 0.33
Identities = 9/61 (14%), Positives = 16/61 (26%)
Query: 49 IIEEDALVGLPNLYHLNLKENAFTSFSESMLAWPELRTIDIAENPIECGCNILWLREMLV 108
I + L+L+ + ID ++N I LR +
Sbjct: 8 IEQAAQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGFPLLRRLKT 67
Query: 109 R 109
Sbjct: 68 L 68
>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes
[TaxId: 1639]}
Length = 210
Score = 27.3 bits (59), Expect = 0.74
Identities = 11/55 (20%), Positives = 21/55 (38%), Gaps = 1/55 (1%)
Query: 35 NLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESMLAWPELRTIDI 89
L L +I + L GL L +L L +N + ++ L +++
Sbjct: 154 RLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISDLR-ALAGLKNLDVLEL 207
Score = 24.2 bits (51), Expect = 7.8
Identities = 8/77 (10%), Positives = 26/77 (33%), Gaps = 2/77 (2%)
Query: 30 FADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESMLAWPELRTIDI 89
F+D+ + K + + L ++ + + S + + P + + +
Sbjct: 18 FSDD-AFAETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSV-QGIQYLPNVTKLFL 75
Query: 90 AENPIECGCNILWLREM 106
N + + L+ +
Sbjct: 76 NGNKLTDIKPLANLKNL 92
>d1scjb_ d.58.3.2 (B:) Subtilisin prosegment {Bacillus subtilis
[TaxId: 1423]}
Length = 71
Score = 25.2 bits (55), Expect = 1.2
Identities = 9/29 (31%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
Query: 29 AFADNLNLETL-TLNKNPKLKIIEEDALV 56
A A L+ + + L K+P + +EED +
Sbjct: 40 AAAATLDEKAVKELKKDPSVAYVEEDHIA 68
>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes
[TaxId: 1639]}
Length = 199
Score = 24.6 bits (52), Expect = 4.9
Identities = 6/29 (20%), Positives = 12/29 (41%)
Query: 48 KIIEEDALVGLPNLYHLNLKENAFTSFSE 76
++ + L L L L++ N + S
Sbjct: 161 QVTDLKPLANLTTLERLDISSNKVSDISV 189
Score = 23.9 bits (50), Expect = 8.4
Identities = 8/66 (12%), Positives = 18/66 (27%), Gaps = 1/66 (1%)
Query: 35 NLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESMLAWPELRTIDIAENPI 94
L K + + + L + L S + + L I+ + N +
Sbjct: 16 ALAEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSI-DGVEYLNNLTQINFSNNQL 74
Query: 95 ECGCNI 100
+
Sbjct: 75 TDITPL 80
>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2
{Human (Homo sapiens) [TaxId: 9606]}
Length = 284
Score = 24.7 bits (52), Expect = 5.8
Identities = 12/79 (15%), Positives = 30/79 (37%), Gaps = 4/79 (5%)
Query: 9 SYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKE 68
+YL+ L ++ ++ + L+TL + ++ L HL +
Sbjct: 200 NYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTLQLLK----EALPHLQINC 255
Query: 69 NAFTSFSESMLAWPELRTI 87
+ FT+ + + + + I
Sbjct: 256 SHFTTIARPTIGNKKNQEI 274
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.134 0.385
Gapped
Lambda K H
0.267 0.0428 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 527,727
Number of extensions: 22715
Number of successful extensions: 87
Number of sequences better than 10.0: 1
Number of HSP's gapped: 74
Number of HSP's successfully gapped: 44
Length of query: 150
Length of database: 2,407,596
Length adjustment: 78
Effective length of query: 72
Effective length of database: 1,336,656
Effective search space: 96239232
Effective search space used: 96239232
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (23.4 bits)