Query psy16572
Match_columns 65
No_of_seqs 242 out of 1073
Neff 9.7
Searched_HMMs 29240
Date Fri Aug 16 16:27:26 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16572.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/16572hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1okc_A ADP, ATP carrier protei 99.7 6.4E-17 2.2E-21 93.0 6.5 56 7-65 216-271 (297)
2 2lck_A Mitochondrial uncouplin 99.7 9.3E-17 3.2E-21 92.7 5.0 52 6-65 208-259 (303)
3 1okc_A ADP, ATP carrier protei 99.6 4.2E-16 1.5E-20 89.6 5.5 57 6-65 118-174 (297)
4 2lck_A Mitochondrial uncouplin 99.6 8.7E-16 3E-20 88.6 4.8 56 6-65 110-165 (303)
5 2acm_A Mucin-1; auto-catalytic 84.6 0.15 5.2E-06 23.0 -0.3 21 44-64 39-59 (66)
6 2a3d_A Protein (de novo three- 48.5 13 0.00043 16.6 1.7 16 19-34 9-24 (73)
7 1yro_A Alpha-lactalbumin; Arg2 46.0 16 0.00055 18.6 2.1 17 47-63 88-104 (123)
8 3vjj_A P9-1; 3.00A {Rice black 45.8 26 0.0009 20.8 3.2 36 12-60 273-308 (368)
9 2fbd_A Lysozyme 1; digestive l 44.8 18 0.00061 18.4 2.2 17 47-63 89-105 (122)
10 1hml_A Alpha-lactalbumin; calc 43.0 18 0.00063 18.9 2.1 17 47-63 107-123 (142)
11 1iiz_A Lysozyme; hydrolase; 2. 38.8 18 0.0006 18.4 1.6 17 47-63 87-103 (120)
12 1e91_A Paired amphipathic heli 35.9 7.6 0.00026 18.4 -0.0 13 21-33 14-26 (85)
13 2z2f_A Lysozyme C-2; stomach l 34.0 26 0.00091 17.9 1.8 17 47-63 92-108 (129)
14 1b9o_A Protein (alpha-lactalbu 32.7 23 0.00079 18.0 1.5 16 47-62 88-103 (123)
15 2czy_A Paired amphipathic heli 32.4 11 0.00036 17.5 0.2 12 21-32 11-22 (77)
16 2cr7_A Paired amphipathic heli 32.1 9.6 0.00033 17.8 -0.0 12 21-32 17-28 (80)
17 1g1e_B SIN3A; four-helix bundl 31.4 17 0.0006 17.3 0.9 23 21-52 17-39 (89)
18 2kdu_B MUNC13-1, protein UNC-1 28.8 19 0.00066 14.4 0.6 9 24-32 13-21 (36)
19 2f05_A Paired amphipathic heli 28.4 21 0.00071 17.7 0.9 13 21-33 14-26 (105)
20 2gv0_A Lysozyme C; hydrolase; 28.4 31 0.001 17.7 1.5 17 47-63 93-110 (131)
21 4b19_A PEPA1; toxin, toxin apo 28.4 28 0.00096 13.3 1.0 15 8-22 11-25 (30)
22 2atz_A H. pylori predicted cod 28.0 41 0.0014 18.2 2.0 17 47-63 86-102 (180)
23 1jug_A Lysozyme; calcium-bindi 26.6 35 0.0012 17.3 1.5 17 47-63 91-108 (125)
24 2nwd_X Lysozyme C; native chem 25.4 37 0.0013 17.4 1.5 17 47-63 92-109 (130)
25 2vb1_A Lysozyme C; antimicrobi 24.4 39 0.0013 17.3 1.5 17 47-63 91-108 (129)
26 1pc2_A Mitochondria fission pr 24.3 48 0.0016 17.4 1.8 19 45-63 108-126 (152)
27 1qqy_A Lysozyme C; APO-type pr 24.2 26 0.00089 18.0 0.8 17 47-63 92-109 (130)
No 1
>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial transporter, nucleotide translocation, membrane protein, transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP: f.42.1.1 PDB: 2c3e_A*
Probab=99.69 E-value=6.4e-17 Score=93.02 Aligned_cols=56 Identities=21% Similarity=0.374 Sum_probs=47.2
Q ss_pred HHHHHHHHHHhhccHHHHHHHHhhcccccchhhhcccCCCHHHHHHHHHHhhccccccC
Q psy16572 7 ILFGCLLLSIGTFPIDTAKTRLQVQGQQLDQQYAKLKYRGMTDVLLQISRKDGFWALYS 65 (65)
Q Consensus 7 ~~~ag~~~~~~~~P~d~iktr~q~~~~~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyr 65 (65)
.++||++++++++|+|+||+|+|.+.... .....|+++++|+++|+++||++||||
T Consensus 216 g~~ag~~a~~~t~P~dvvktr~q~~~~~~---~~~~~y~~~~~~~~~i~~~eG~~glyr 271 (297)
T 1okc_A 216 AQTVTAVAGLVSYPFDTVRRRMMMQSGRK---GADIMYTGTVDCWRKIAKDEGPKAFFK 271 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTTTCC---GGGCSCSSHHHHHHHHHHHHCGGGGGT
T ss_pred HHHHHHHHHHhcChHHHHHHHHhhcCCCC---CCCCCCCCHHHHHHHHHHHcCcCeEec
Confidence 46777888999999999999999875421 123479999999999999999999997
No 2
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton translocator, mitochondrial carrier transport protein, structural genomics; NMR {Mus musculus}
Probab=99.66 E-value=9.3e-17 Score=92.69 Aligned_cols=52 Identities=23% Similarity=0.314 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHhhccHHHHHHHHhhcccccchhhhcccCCCHHHHHHHHHHhhccccccC
Q psy16572 6 EILFGCLLLSIGTFPIDTAKTRLQVQGQQLDQQYAKLKYRGMTDVLLQISRKDGFWALYS 65 (65)
Q Consensus 6 ~~~~ag~~~~~~~~P~d~iktr~q~~~~~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyr 65 (65)
..++||++++++++|+|+||+|+|.+... .|+++++|+++|+++||++||||
T Consensus 208 ~g~~ag~~~~~~~~P~dvvktrlq~~~~~--------~y~~~~~~~~~i~~~eG~~glyr 259 (303)
T 2lck_A 208 SAFGAGFCTTVIASPVDVVKTRYMNSALG--------QYHSAGHCALTMLRKEGPRAFYK 259 (303)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCCSS--------SCCSHHHHHHHHHHSSCTHHHHS
T ss_pred HHHHHHHHHHHHcCHHHHHHHHHHhcccc--------ccCCHHHHHHHHHHHcChHHhhc
Confidence 44678888999999999999999998642 58999999999999999999997
No 3
>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial transporter, nucleotide translocation, membrane protein, transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP: f.42.1.1 PDB: 2c3e_A*
Probab=99.63 E-value=4.2e-16 Score=89.61 Aligned_cols=57 Identities=23% Similarity=0.292 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHhhccHHHHHHHHhhcccccchhhhcccCCCHHHHHHHHHHhhccccccC
Q psy16572 6 EILFGCLLLSIGTFPIDTAKTRLQVQGQQLDQQYAKLKYRGMTDVLLQISRKDGFWALYS 65 (65)
Q Consensus 6 ~~~~ag~~~~~~~~P~d~iktr~q~~~~~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyr 65 (65)
..++||++++++++|+|+||+|+|.+.... .....|+++++++++|+++||++||||
T Consensus 118 ag~~ag~~~~~~~~Pld~vktrlq~~~~~~---~~~~~~~~~~~~~~~i~~~eG~~glyr 174 (297)
T 1okc_A 118 SGGAAGATSLCFVYPLDFARTRLAADVGKG---AAQREFTGLGNCITKIFKSDGLRGLYQ 174 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCCSS---TTTCSCSSHHHHHHHHHHHHCHHHHTT
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHhccccCC---CcCcCCCCHHHHHHHHHHhccHHHhcC
Confidence 346777888899999999999999985421 123468999999999999999999997
No 4
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton translocator, mitochondrial carrier transport protein, structural genomics; NMR {Mus musculus}
Probab=99.60 E-value=8.7e-16 Score=88.64 Aligned_cols=56 Identities=21% Similarity=0.274 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHhhccHHHHHHHHhhcccccchhhhcccCCCHHHHHHHHHHhhccccccC
Q psy16572 6 EILFGCLLLSIGTFPIDTAKTRLQVQGQQLDQQYAKLKYRGMTDVLLQISRKDGFWALYS 65 (65)
Q Consensus 6 ~~~~ag~~~~~~~~P~d~iktr~q~~~~~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyr 65 (65)
..++||+++.++++|+|+||+|+|.+... .....|+++++++++|+++||++||||
T Consensus 110 ag~~ag~~~~~~~~Pld~vktrlq~~~~~----~~~~~~~~~~~~~~~i~~~eG~~glyr 165 (303)
T 2lck_A 110 AGSTTGALAVAVAQPTDVVKVRFQAQARA----GGGRRYQSTVEAYKTIAREEGIRGLWK 165 (303)
T ss_dssp HHHHHHHHHHHHSCHHHHHHHHHHHSCSC----CCSSSCCCHHHHHHHHHHHHCHHHHHH
T ss_pred HHHHHHHHHHHHcCcHHHHHHHHhccccc----CCCCCCCCHHHHHHHHHHhcChhhhhC
Confidence 44677788889999999999999998642 113478999999999999999999986
No 5
>2acm_A Mucin-1; auto-catalytic proteolysis, structural protein; NMR {Homo sapiens}
Probab=84.58 E-value=0.15 Score=23.04 Aligned_cols=21 Identities=33% Similarity=0.667 Sum_probs=18.2
Q ss_pred CCCHHHHHHHHHHhhcccccc
Q psy16572 44 YRGMTDVLLQISRKDGFWALY 64 (65)
Q Consensus 44 ~~~~~~~~~~i~~~eG~~gly 64 (65)
.+++.+.+.+|++++++.||+
T Consensus 39 qr~is~L~lqIykq~~FLgl~ 59 (66)
T 2acm_A 39 QRDISEMFLQIYKQGGFLGLS 59 (66)
T ss_dssp HHHHHHHHHHHCTTTTEEEEE
T ss_pred HHHHHHHHHHHHccCCeeeee
Confidence 357889999999999999985
No 6
>2a3d_A Protein (de novo three-helix bundle); NMR {Synthetic construct} SCOP: k.9.1.1
Probab=48.46 E-value=13 Score=16.57 Aligned_cols=16 Identities=38% Similarity=0.422 Sum_probs=12.1
Q ss_pred ccHHHHHHHHhhcccc
Q psy16572 19 FPIDTAKTRLQVQGQQ 34 (65)
Q Consensus 19 ~P~d~iktr~q~~~~~ 34 (65)
.-+..||||+|.-+.+
T Consensus 9 qrlaaiktrlqalggs 24 (73)
T 2a3d_A 9 QRLAAIKTRLQALGGS 24 (73)
T ss_dssp HHHHHHHHHHHHCSSG
T ss_pred HHHHHHHHHHHHhcCc
Confidence 4567799999987653
No 7
>1yro_A Alpha-lactalbumin; Arg228Lys mutation, UDP-GAL complex, transferase activator/transferase complex; HET: GDU UDP MES PG4; 1.90A {Mus musculus} SCOP: d.2.1.2 PDB: 1nhe_A* 1nkh_A* 1nmm_A* 1nqi_A* 1nwg_A* 1o23_A* 1oqm_A* 1pzy_A* 1nf5_A* 2fyc_A* 2fyd_A*
Probab=45.96 E-value=16 Score=18.63 Aligned_cols=17 Identities=12% Similarity=-0.124 Sum_probs=14.4
Q ss_pred HHHHHHHHHHhhccccc
Q psy16572 47 MTDVLLQISRKDGFWAL 63 (65)
Q Consensus 47 ~~~~~~~i~~~eG~~gl 63 (65)
...|.++|++++|+.+.
T Consensus 88 ~i~CAk~I~~~~G~~aW 104 (123)
T 1yro_A 88 DIACAKKILAIKGIDYW 104 (123)
T ss_dssp HHHHHHHHHHHTCGGGS
T ss_pred HHHHHHHHHHhcCcchh
Confidence 48899999999998764
No 8
>3vjj_A P9-1; 3.00A {Rice black streaked dwarf virus}
Probab=45.81 E-value=26 Score=20.77 Aligned_cols=36 Identities=17% Similarity=0.307 Sum_probs=23.4
Q ss_pred HHHHHhhccHHHHHHHHhhcccccchhhhcccCCCHHHHHHHHHHhhcc
Q psy16572 12 LLLSIGTFPIDTAKTRLQVQGQQLDQQYAKLKYRGMTDVLLQISRKDGF 60 (65)
Q Consensus 12 ~~~~~~~~P~d~iktr~q~~~~~~~~~~~~~~~~~~~~~~~~i~~~eG~ 60 (65)
..+++--||+|.+|-.++..- ++...+.+.++++|+
T Consensus 273 qLaTFdnypfdllRfqL~Sli-------------stp~~I~e~i~K~GL 308 (368)
T 3vjj_A 273 QLATFDNYPFDLLRFQLSSLI-------------STPALIREKIAKEGL 308 (368)
T ss_dssp HHHHCTTCBHHHHHHHCSSCC-------------CCCHHHHHHHHHSCS
T ss_pred eeecCCCCCHHHHHHHhhhhc-------------cChHHHHHHHHhcCc
Confidence 356677899999987776542 223456666666664
No 9
>2fbd_A Lysozyme 1; digestive lysozime, hydrolase; HET: PEG; 1.90A {Musca domestica} PDB: 2h5z_A* 3cb7_A
Probab=44.84 E-value=18 Score=18.40 Aligned_cols=17 Identities=18% Similarity=0.226 Sum_probs=14.4
Q ss_pred HHHHHHHHHHhhccccc
Q psy16572 47 MTDVLLQISRKDGFWAL 63 (65)
Q Consensus 47 ~~~~~~~i~~~eG~~gl 63 (65)
...|.++|++++|+.+.
T Consensus 89 ~i~CAk~I~~~~G~~aW 105 (122)
T 2fbd_A 89 SVTCARKIKSQQGWTAW 105 (122)
T ss_dssp HHHHHHHHHHHHCGGGS
T ss_pred HHHHHHHHHHhcCCccc
Confidence 47899999999998764
No 10
>1hml_A Alpha-lactalbumin; calcium-binding protein; 1.70A {Homo sapiens} SCOP: d.2.1.2
Probab=43.03 E-value=18 Score=18.88 Aligned_cols=17 Identities=12% Similarity=-0.171 Sum_probs=14.1
Q ss_pred HHHHHHHHHHhhccccc
Q psy16572 47 MTDVLLQISRKDGFWAL 63 (65)
Q Consensus 47 ~~~~~~~i~~~eG~~gl 63 (65)
...|.++|++++|+.+.
T Consensus 107 ~i~CAk~I~~~~G~~aW 123 (142)
T 1hml_A 107 DIMCAKKILDIKGIDYW 123 (142)
T ss_dssp HHHHHHHHHHHTCGGGS
T ss_pred HHHHHHHHHHhcCcchh
Confidence 47899999999998754
No 11
>1iiz_A Lysozyme; hydrolase; 2.40A {Antheraea mylitta} SCOP: d.2.1.2 PDB: 1gd6_A
Probab=38.82 E-value=18 Score=18.40 Aligned_cols=17 Identities=18% Similarity=0.177 Sum_probs=14.0
Q ss_pred HHHHHHHHHHhhccccc
Q psy16572 47 MTDVLLQISRKDGFWAL 63 (65)
Q Consensus 47 ~~~~~~~i~~~eG~~gl 63 (65)
...|.++|++++|+.+.
T Consensus 87 ~v~CAk~I~~~~G~~aW 103 (120)
T 1iiz_A 87 ASTCAKKIYKRTKFDAW 103 (120)
T ss_dssp HHHHHHHHHHHHTTTTC
T ss_pred HHHHHHHHHHhcCcchH
Confidence 47899999999998753
No 12
>1e91_A Paired amphipathic helix protein SIN3B; eukaryotic transcriptional regulation, SIN3, PAH domains, protein-protein interactions; NMR {Mus musculus} SCOP: a.59.1.1 PDB: 1pd7_A
Probab=35.86 E-value=7.6 Score=18.38 Aligned_cols=13 Identities=23% Similarity=0.355 Sum_probs=9.3
Q ss_pred HHHHHHHHhhccc
Q psy16572 21 IDTAKTRLQVQGQ 33 (65)
Q Consensus 21 ~d~iktr~q~~~~ 33 (65)
++-||.|.|-++.
T Consensus 14 v~kVK~rF~~~p~ 26 (85)
T 1e91_A 14 VNKIKTRFLDHPE 26 (85)
T ss_dssp HHHHHHHTSSCHH
T ss_pred HHHHHHHHhcChH
Confidence 5678888887543
No 13
>2z2f_A Lysozyme C-2; stomach lysozyme, 1,4-beta-N-acetylmuramidase C, bacteriolytic enzyme, hydrolase; 1.50A {Bos taurus}
Probab=34.00 E-value=26 Score=17.92 Aligned_cols=17 Identities=18% Similarity=0.151 Sum_probs=14.1
Q ss_pred HHHHHHHHHHhhccccc
Q psy16572 47 MTDVLLQISRKDGFWAL 63 (65)
Q Consensus 47 ~~~~~~~i~~~eG~~gl 63 (65)
...|.++|++++|+.+.
T Consensus 92 ~i~CAk~I~~~~G~~aW 108 (129)
T 2z2f_A 92 AVACAKHIVSEQGITAW 108 (129)
T ss_dssp HHHHHHHHHHHHCGGGC
T ss_pred HHHHHHHHHHhcCcchh
Confidence 47899999999998753
No 14
>1b9o_A Protein (alpha-lactalbumin); calcium-binding protein, high resolution; 1.15A {Homo sapiens} SCOP: d.2.1.2 PDB: 1a4v_A 1alc_A 1hmk_A 1hfy_A 1f6r_A 1f6s_A 2g4n_A 1fkq_A 1fkv_A 1hfz_A 1hfx_A
Probab=32.69 E-value=23 Score=18.03 Aligned_cols=16 Identities=13% Similarity=-0.168 Sum_probs=13.6
Q ss_pred HHHHHHHHHHhhcccc
Q psy16572 47 MTDVLLQISRKDGFWA 62 (65)
Q Consensus 47 ~~~~~~~i~~~eG~~g 62 (65)
...|.++|++++|+.+
T Consensus 88 ~i~CAk~I~~~~G~~a 103 (123)
T 1b9o_A 88 DIMCAKKILDIKGIDY 103 (123)
T ss_dssp HHHHHHHHHHHTTTHH
T ss_pred HHHHHHHHHHhcCcch
Confidence 4789999999999765
No 15
>2czy_A Paired amphipathic helix protein SIN3B; SIN3, PAH1, transcriptional repressor, gene regulation; NMR {Mus musculus}
Probab=32.36 E-value=11 Score=17.51 Aligned_cols=12 Identities=25% Similarity=0.396 Sum_probs=8.8
Q ss_pred HHHHHHHHhhcc
Q psy16572 21 IDTAKTRLQVQG 32 (65)
Q Consensus 21 ~d~iktr~q~~~ 32 (65)
++-||.|.|-++
T Consensus 11 l~~VK~~F~~~p 22 (77)
T 2czy_A 11 LDQVKIRFGSDP 22 (77)
T ss_dssp HHHHHHHTTTCH
T ss_pred HHHHHHHHccCh
Confidence 577888888654
No 16
>2cr7_A Paired amphipathic helix protein SIN3B; paired amphipathic helix repeat, transcriptional repressor, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rmr_A 2rms_A
Probab=32.06 E-value=9.6 Score=17.81 Aligned_cols=12 Identities=25% Similarity=0.396 Sum_probs=8.5
Q ss_pred HHHHHHHHhhcc
Q psy16572 21 IDTAKTRLQVQG 32 (65)
Q Consensus 21 ~d~iktr~q~~~ 32 (65)
++-||.|.|-++
T Consensus 17 l~~VK~rF~~~p 28 (80)
T 2cr7_A 17 LDQVKIRFGSDP 28 (80)
T ss_dssp HHHHHHHTSSCH
T ss_pred HHHHHHHHccCh
Confidence 567888887543
No 17
>1g1e_B SIN3A; four-helix bundle, protein-peptide complex, transcription; NMR {Mus musculus} SCOP: a.59.1.1 PDB: 1s5q_B 1s5r_B 2l9s_B
Probab=31.41 E-value=17 Score=17.28 Aligned_cols=23 Identities=26% Similarity=0.486 Sum_probs=14.8
Q ss_pred HHHHHHHHhhcccccchhhhcccCCCHHHHHH
Q psy16572 21 IDTAKTRLQVQGQQLDQQYAKLKYRGMTDVLL 52 (65)
Q Consensus 21 ~d~iktr~q~~~~~~~~~~~~~~~~~~~~~~~ 52 (65)
+.-||.|.|-++. .|..+++.++
T Consensus 17 vnkVK~rF~~~p~---------~Y~~FL~IL~ 39 (89)
T 1g1e_B 17 VNKIKNRFQGQPD---------IYKAFLEILH 39 (89)
T ss_dssp HHHHHHHTTTCHH---------HHHHHHHHHH
T ss_pred HHHHHHHHccChH---------HHHHHHHHHH
Confidence 5678889887544 4555555544
No 18
>2kdu_B MUNC13-1, protein UNC-13 homolog A; calmodulin, calcium, acetylation, methylation, alternative splicing, cell junction, cell membrane, coiled coil; NMR {Xenopus laevis}
Probab=28.78 E-value=19 Score=14.38 Aligned_cols=9 Identities=44% Similarity=0.623 Sum_probs=6.4
Q ss_pred HHHHHhhcc
Q psy16572 24 AKTRLQVQG 32 (65)
Q Consensus 24 iktr~q~~~ 32 (65)
-|+|+|.+.
T Consensus 13 nKVR~qlqe 21 (36)
T 2kdu_B 13 NKVRMQLQE 21 (36)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHc
Confidence 477888774
No 19
>2f05_A Paired amphipathic helix protein SIN3B; helix bundle, transcription repressor; NMR {Mus musculus} SCOP: a.59.1.1
Probab=28.44 E-value=21 Score=17.65 Aligned_cols=13 Identities=23% Similarity=0.355 Sum_probs=9.5
Q ss_pred HHHHHHHHhhccc
Q psy16572 21 IDTAKTRLQVQGQ 33 (65)
Q Consensus 21 ~d~iktr~q~~~~ 33 (65)
++-||+|.|-++.
T Consensus 14 vnkVK~rF~d~p~ 26 (105)
T 2f05_A 14 VNKIKTRFLDHPE 26 (105)
T ss_dssp HHHHHHHTTTCHH
T ss_pred HHHHHHHHccChH
Confidence 5678899887544
No 20
>2gv0_A Lysozyme C; hydrolase; 1.90A {Pelodiscus sinensis}
Probab=28.42 E-value=31 Score=17.71 Aligned_cols=17 Identities=24% Similarity=0.315 Sum_probs=13.9
Q ss_pred HHHHHHHHHHh-hccccc
Q psy16572 47 MTDVLLQISRK-DGFWAL 63 (65)
Q Consensus 47 ~~~~~~~i~~~-eG~~gl 63 (65)
...|.++|+++ +|+.+.
T Consensus 93 ~i~CAk~I~~~~~G~~aW 110 (131)
T 2gv0_A 93 AVNCAKRIVRDPNGMGAW 110 (131)
T ss_dssp HHHHHHHHHHSTTGGGGS
T ss_pred HHHHHHHHHhcccCCchh
Confidence 47899999998 898754
No 21
>4b19_A PEPA1; toxin, toxin apoptotic peptide, apoptosis; NMR {Staphylococcus aureus}
Probab=28.35 E-value=28 Score=13.30 Aligned_cols=15 Identities=0% Similarity=0.071 Sum_probs=9.0
Q ss_pred HHHHHHHHHhhccHH
Q psy16572 8 LFGCLLLSIGTFPID 22 (65)
Q Consensus 8 ~~ag~~~~~~~~P~d 22 (65)
+++|++-++++|-++
T Consensus 11 visGcivalF~hWL~ 25 (30)
T 4b19_A 11 VISGCAIAFFSYWLS 25 (30)
T ss_dssp THHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 355666666666554
No 22
>2atz_A H. pylori predicted coding region HP0184; structural genomics, PSI, protein struc initiative, midwest center for structural genomics, MCSG; HET: DGT; 2.00A {Helicobacter pylori} SCOP: d.264.1.3
Probab=27.97 E-value=41 Score=18.24 Aligned_cols=17 Identities=18% Similarity=0.347 Sum_probs=14.4
Q ss_pred HHHHHHHHHHhhccccc
Q psy16572 47 MTDVLLQISRKDGFWAL 63 (65)
Q Consensus 47 ~~~~~~~i~~~eG~~gl 63 (65)
+++-++.++|+||+..|
T Consensus 86 F~hraqlLlReeGfinf 102 (180)
T 2atz_A 86 FYHKAQLLLREEGFMNF 102 (180)
T ss_dssp HHHHHHHHHHHTTCCCE
T ss_pred HHHHHHHHHHHhCccee
Confidence 68889999999998654
No 23
>1jug_A Lysozyme; calcium-binding; 1.90A {Tachyglossus aculeatus} SCOP: d.2.1.2
Probab=26.55 E-value=35 Score=17.35 Aligned_cols=17 Identities=12% Similarity=0.098 Sum_probs=13.8
Q ss_pred HHHHHHHHHHh-hccccc
Q psy16572 47 MTDVLLQISRK-DGFWAL 63 (65)
Q Consensus 47 ~~~~~~~i~~~-eG~~gl 63 (65)
...|.++|+++ +|+.+.
T Consensus 91 ~i~CAk~I~~~~~G~~aW 108 (125)
T 1jug_A 91 DLKCAKKIAGEAKGLTPW 108 (125)
T ss_dssp HHHHHHHHHHHHTSSTTC
T ss_pred HHHHHHHHHccccCCcch
Confidence 47899999998 898753
No 24
>2nwd_X Lysozyme C; native chemical ligation, chemical protein synthesis, convergent synthesis, hydrolase; 1.04A {Synthetic} SCOP: d.2.1.2 PDB: 1iwu_A 1iwv_A 1iww_A 1iwx_A 1iwy_A 1iwz_A 1iy3_A 1iy4_A 1iwt_A 1jwr_A 1lz1_A 1lzr_A* 1lzs_A* 1op9_B 1re2_A* 1rem_A* 1rex_A 1rey_A* 1rez_A* 1jsf_A ...
Probab=25.41 E-value=37 Score=17.38 Aligned_cols=17 Identities=18% Similarity=0.259 Sum_probs=14.0
Q ss_pred HHHHHHHHHHh-hccccc
Q psy16572 47 MTDVLLQISRK-DGFWAL 63 (65)
Q Consensus 47 ~~~~~~~i~~~-eG~~gl 63 (65)
...|.++|+++ +|+.+.
T Consensus 92 ~i~CAk~I~~~~~G~~aW 109 (130)
T 2nwd_X 92 AVACAKRVVRDPQGIRAW 109 (130)
T ss_dssp HHHHHHHHHHSTTGGGGS
T ss_pred HHHHHHHHHhccccccch
Confidence 47899999998 898753
No 25
>2vb1_A Lysozyme C; antimicrobial, triclinic HEWL, atomic resolution, allergen, hydrolase, glycosidase, bacteriolytic enzyme; HET: EDO; 0.65A {Gallus gallus} SCOP: d.2.1.2 PDB: 194l_A 1aki_A 1azf_A 1b0d_A* 1b2k_A 1bgi_A 1bhz_A 1bvk_C 1bvx_A 1bwh_A 1bwi_A 1bwj_A 1c08_C 1c10_A 1dpw_A 1dpx_A 1dqj_C 1e8l_A 1f0w_A 1f10_A ...
Probab=24.36 E-value=39 Score=17.27 Aligned_cols=17 Identities=18% Similarity=0.214 Sum_probs=13.7
Q ss_pred HHHHHHHHHHh-hccccc
Q psy16572 47 MTDVLLQISRK-DGFWAL 63 (65)
Q Consensus 47 ~~~~~~~i~~~-eG~~gl 63 (65)
...|.++|+++ +|+.+.
T Consensus 91 ~i~CAk~I~~~~~G~~aW 108 (129)
T 2vb1_A 91 SVNCAKKIVSDGNGMNAW 108 (129)
T ss_dssp HHHHHHHHHHTTCCGGGC
T ss_pred HHHHHHHHHhccccCcch
Confidence 47899999998 888753
No 26
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=24.35 E-value=48 Score=17.36 Aligned_cols=19 Identities=16% Similarity=0.424 Sum_probs=13.6
Q ss_pred CCHHHHHHHHHHhhccccc
Q psy16572 45 RGMTDVLLQISRKDGFWAL 63 (65)
Q Consensus 45 ~~~~~~~~~i~~~eG~~gl 63 (65)
......+.+..++||+.|+
T Consensus 108 ~~Lk~~ie~~~~kdgl~G~ 126 (152)
T 1pc2_A 108 KELERLIDKAMKKDGLVGM 126 (152)
T ss_dssp HHHHHHHHHHHHHTTCCCS
T ss_pred HHHHHHHHHHHHHhhHHHH
Confidence 4556667778888888764
No 27
>1qqy_A Lysozyme C; APO-type protein, calcium binding lysozyme, enzyme, hydrolase; 1.85A {Canis lupus familiaris} SCOP: d.2.1.2 PDB: 1el1_A 1i56_A 2cwi_A 2z2e_A 2eql_A
Probab=24.22 E-value=26 Score=17.98 Aligned_cols=17 Identities=12% Similarity=0.167 Sum_probs=13.9
Q ss_pred HHHHHHHHHHh-hccccc
Q psy16572 47 MTDVLLQISRK-DGFWAL 63 (65)
Q Consensus 47 ~~~~~~~i~~~-eG~~gl 63 (65)
...|.++|+++ +|+.+.
T Consensus 92 ~v~CAk~I~~~~~G~~aW 109 (130)
T 1qqy_A 92 DIACAKRVVKDPNGMSAW 109 (130)
T ss_dssp HHHHHHHHTTSTTGGGGS
T ss_pred HHHHHHHHHcccccccch
Confidence 47899999998 898754
Done!