RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy16572
         (65 letters)



>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton
          translocator, mitochondrial carrier transport protein,
          structural genomics; NMR {Mus musculus}
          Length = 303

 Score = 61.9 bits (151), Expect = 1e-13
 Identities = 23/50 (46%), Positives = 33/50 (66%), Gaps = 2/50 (4%)

Query: 18 TFPIDTAKTRLQVQG--QQLDQQYAKLKYRGMTDVLLQISRKDGFWALYS 65
          TFP+DTAK RLQ+QG  Q L +  A  +YRG+   +L + R +G  +LY+
Sbjct: 19 TFPLDTAKVRLQIQGESQGLVRTAASAQYRGVLGTILTMVRTEGPRSLYN 68



 Score = 46.1 bits (110), Expect = 5e-08
 Identities = 12/50 (24%), Positives = 18/50 (36%), Gaps = 8/50 (16%)

Query: 15  SIGTFPIDTAKTRLQVQGQQLDQQYAKLKYRGMTDVLLQISRKDGFWALY 64
           ++   P+D  KTR               +Y       L + RK+G  A Y
Sbjct: 217 TVIASPVDVVKTRYMNSA--------LGQYHSAGHCALTMLRKEGPRAFY 258



 Score = 41.5 bits (98), Expect = 3e-06
 Identities = 11/45 (24%), Positives = 20/45 (44%), Gaps = 4/45 (8%)

Query: 20  PIDTAKTRLQVQGQQLDQQYAKLKYRGMTDVLLQISRKDGFWALY 64
           P D  K R Q Q +    +    +Y+   +    I+R++G   L+
Sbjct: 124 PTDVVKVRFQAQARAGGGR----RYQSTVEAYKTIAREEGIRGLW 164


>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial
           transporter, nucleotide translocation, membrane protein,
           transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP:
           f.42.1.1 PDB: 2c3e_A*
          Length = 297

 Score = 48.8 bits (117), Expect = 7e-09
 Identities = 11/47 (23%), Positives = 22/47 (46%), Gaps = 3/47 (6%)

Query: 18  TFPIDTAKTRLQVQGQQLDQQYAKLKYRGMTDVLLQISRKDGFWALY 64
           ++P DT + R+ +Q  +         Y G  D   +I++ +G  A +
Sbjct: 227 SYPFDTVRRRMMMQSGRKGADI---MYTGTVDCWRKIAKDEGPKAFF 270



 Score = 48.4 bits (116), Expect = 8e-09
 Identities = 13/47 (27%), Positives = 24/47 (51%), Gaps = 3/47 (6%)

Query: 18  TFPIDTAKTRLQVQGQQLDQQYAKLKYRGMTDVLLQISRKDGFWALY 64
            +P+D A+TRL     +   Q    ++ G+ + + +I + DG   LY
Sbjct: 130 VYPLDFARTRLAADVGKGAAQR---EFTGLGNCITKIFKSDGLRGLY 173



 Score = 44.2 bits (105), Expect = 3e-07
 Identities = 15/47 (31%), Positives = 27/47 (57%), Gaps = 1/47 (2%)

Query: 18 TFPIDTAKTRLQVQGQQLDQQYAKLKYRGMTDVLLQISRKDGFWALY 64
            PI+  K  LQVQ     Q  A+ +Y+G+ D +++I ++ GF + +
Sbjct: 25 VAPIERVKLLLQVQHAS-KQISAEKQYKGIIDCVVRIPKEQGFLSFW 70


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
            acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
            synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 26.2 bits (57), Expect = 0.79
 Identities = 3/19 (15%), Positives = 12/19 (63%)

Query: 31   QGQQLDQQYAKLKYRGMTD 49
            +G+++ + Y+ + +  + D
Sbjct: 1680 KGKRIRENYSAMIFETIVD 1698


>1nyc_A Staphostatin B, cysteine protease inhibitor; SSPC, hydrolase
          inhibitor; 1.40A {Staphylococcus aureus subsp} SCOP:
          b.61.2.2 PDB: 1pxv_C 1y4h_C 1qwx_A
          Length = 111

 Score = 25.5 bits (55), Expect = 1.2
 Identities = 12/40 (30%), Positives = 18/40 (45%)

Query: 21 IDTAKTRLQVQGQQLDQQYAKLKYRGMTDVLLQISRKDGF 60
          IDTA  R++      ++    L Y     +L+Q S K G 
Sbjct: 60 IDTAHQRIKFSSFDNEEIIYILDYDDTQHILMQTSSKQGI 99


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.325    0.141    0.421 

Gapped
Lambda     K      H
   0.267   0.0541    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 887,036
Number of extensions: 34802
Number of successful extensions: 96
Number of sequences better than 10.0: 1
Number of HSP's gapped: 90
Number of HSP's successfully gapped: 8
Length of query: 65
Length of database: 6,701,793
Length adjustment: 36
Effective length of query: 29
Effective length of database: 5,696,637
Effective search space: 165202473
Effective search space used: 165202473
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 51 (23.9 bits)