RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy16572
         (65 letters)



>d1okca_ f.42.1.1 (A:) ADP,ATP carrier protein {Cow (Bos taurus),
          heart isoform t1 [TaxId: 9913]}
          Length = 292

 Score = 42.4 bits (98), Expect = 4e-07
 Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 1/44 (2%)

Query: 18 TFPIDTAKTRLQVQGQQLDQQYAKLKYRGMTDVLLQISRKDGFW 61
            PI+  K  LQVQ         K +Y+G+ D +++I ++ GF 
Sbjct: 24 VAPIERVKLLLQVQHASKQISAEK-QYKGIIDCVVRIPKEQGFL 66



 Score = 35.8 bits (81), Expect = 1e-04
 Identities = 12/54 (22%), Positives = 27/54 (50%), Gaps = 3/54 (5%)

Query: 11  CLLLSIGTFPIDTAKTRLQVQGQQLDQQYAKLKYRGMTDVLLQISRKDGFWALY 64
             +  + ++P DT + R+ +Q     ++ A + Y G  D   +I++ +G  A +
Sbjct: 219 TAVAGLVSYPFDTVRRRMMMQS---GRKGADIMYTGTVDCWRKIAKDEGPKAFF 269


>d1aq0a_ c.1.8.3 (A:) Plant beta-glucanases {Barley (Hordeum
           vulgare), 1,3-1,4-beta-glucanase [TaxId: 4513]}
          Length = 306

 Score = 28.4 bits (63), Expect = 0.046
 Identities = 11/46 (23%), Positives = 17/46 (36%)

Query: 11  CLLLSIGTFPIDTAKTRLQVQGQQLDQQYAKLKYRGMTDVLLQISR 56
            L  + GT   D A     +    +D  Y  +   G + V L +S 
Sbjct: 187 ALFNASGTVVRDGAYGYQNLFDTTVDAFYTAMGKHGGSSVKLVVSE 232


>d1nyca_ b.61.2.2 (A:) Staphostatin B (SspC) {Staphylococcus
          aureus [TaxId: 1280]}
          Length = 111

 Score = 23.1 bits (49), Expect = 2.6
 Identities = 12/40 (30%), Positives = 18/40 (45%)

Query: 21 IDTAKTRLQVQGQQLDQQYAKLKYRGMTDVLLQISRKDGF 60
          IDTA  R++      ++    L Y     +L+Q S K G 
Sbjct: 60 IDTAHQRIKFSSFDNEEIIYILDYDDTQHILMQTSSKQGI 99


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.325    0.141    0.421 

Gapped
Lambda     K      H
   0.267   0.0399    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 211,363
Number of extensions: 6172
Number of successful extensions: 16
Number of sequences better than 10.0: 1
Number of HSP's gapped: 16
Number of HSP's successfully gapped: 4
Length of query: 65
Length of database: 2,407,596
Length adjustment: 34
Effective length of query: 31
Effective length of database: 1,940,776
Effective search space: 60164056
Effective search space used: 60164056
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 47 (22.8 bits)