BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy16574
(152 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8T8R1|Y3800_DROME CCHC-type zinc finger protein CG3800 OS=Drosophila melanogaster
GN=CG3800 PE=1 SV=1
Length = 165
Score = 102 bits (254), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 51/114 (44%), Positives = 67/114 (58%), Gaps = 18/114 (15%)
Query: 39 CYKCNNYGHFARECATESVTCYNCSGQGHVAKDCTVKSSIICYNCNSSGHFARNCPNDSS 98
CYKCN +GHFAR C E+ CY C+G GH++KDCT + CY CN +GH+ RNCP +
Sbjct: 57 CYKCNQFGHFARACPEEAERCYRCNGIGHISKDCTQADNPTCYRCNKTGHWVRNCPEAVN 116
Query: 99 KR------CYACHQAGHMAKECPGQTAGKSPEPVVDMSLTCYVCGHQGHLSYDC 146
+R CY C++ GH++K CP + S TCY CG GHL +C
Sbjct: 117 ERGPTNVSCYKCNRTGHISKNCP------------ETSKTCYGCGKSGHLRREC 158
Score = 53.1 bits (126), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 37/67 (55%), Gaps = 3/67 (4%)
Query: 9 CYNCFDFGHYQYSCPQKSSADARGDKVGIVCYKCNNYGHFARECATESVTCYNCSGQGHV 68
CY C GH+ +CP+ + + RG + CYKCN GH ++ C S TCY C GH+
Sbjct: 98 CYRCNKTGHWVRNCPE--AVNERGP-TNVSCYKCNRTGHISKNCPETSKTCYGCGKSGHL 154
Query: 69 AKDCTVK 75
++C K
Sbjct: 155 RRECDEK 161
Score = 30.8 bits (68), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 20/48 (41%), Gaps = 10/48 (20%)
Query: 5 STIQCYNCFDFGHYQYSCPQKSSADARGDKVGIVCYKCNNYGHFAREC 52
+ + CY C GH +CP+ S CY C GH REC
Sbjct: 121 TNVSCYKCNRTGHISKNCPETSK----------TCYGCGKSGHLRREC 158
>sp|Q04832|HEXP_LEIMA DNA-binding protein HEXBP OS=Leishmania major GN=HEXBP PE=4 SV=1
Length = 271
Score = 94.7 bits (234), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 57/183 (31%), Positives = 81/183 (44%), Gaps = 42/183 (22%)
Query: 3 STSTIQCYNCFDFGHYQYSCPQKSSADARGDKVGIVCYKCNNYGHFARECATE------- 55
+ S+ C NC GHY CP+ AD++GD+ C++C GH +REC E
Sbjct: 12 TESSTSCRNCGKEGHYARECPE---ADSKGDERSTTCFRCGEEGHMSRECPNEARSGAAG 68
Query: 56 SVTCYNCSGQGHVAKDCT------VKSSIICYNCNSSGHFARNCPN-------------- 95
++TC+ C GH+++DC CY C GH +R+CP+
Sbjct: 69 AMTCFRCGEAGHMSRDCPNSAKPGAAKGFECYKCGQEGHLSRDCPSSQGGSRGGYGQKRG 128
Query: 96 --------DSSKRCYACHQAGHMAKECPGQTAGKSPEPVVDMSLTCYVCGHQGHLSYDCK 147
+ CY C AGH++++CP G S TCY CG GH+S DC
Sbjct: 129 RSGAQGGYSGDRTCYKCGDAGHISRDCPNGQGGYS----GAGDRTCYKCGDAGHISRDCP 184
Query: 148 LVQ 150
Q
Sbjct: 185 NGQ 187
Score = 84.7 bits (208), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 57/173 (32%), Positives = 74/173 (42%), Gaps = 34/173 (19%)
Query: 7 IQCYNCFDFGHYQYSCP--QKSSADARGDKVGI-----------VCYKCNNYGHFAREC- 52
+CY C GH CP Q S G K G CYKC + GH +R+C
Sbjct: 97 FECYKCGQEGHLSRDCPSSQGGSRGGYGQKRGRSGAQGGYSGDRTCYKCGDAGHISRDCP 156
Query: 53 -------ATESVTCYNCSGQGHVAKDC-------TVKSSIICYNCNSSGHFARNCPNDSS 98
TCY C GH+++DC + CY C SGH +R CP+ S
Sbjct: 157 NGQGGYSGAGDRTCYKCGDAGHISRDCPNGQGGYSGAGDRKCYKCGESGHMSRECPSAGS 216
Query: 99 -----KRCYACHQAGHMAKECPGQTAGKSPEPVVDMSLTCYVCGHQGHLSYDC 146
+ CY C + GH+++ECP + G TCY CG GH+S DC
Sbjct: 217 TGSGDRACYKCGKPGHISRECP-EAGGSYGGSRGGGDRTCYKCGEAGHISRDC 268
Score = 84.3 bits (207), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 51/181 (28%), Positives = 74/181 (40%), Gaps = 46/181 (25%)
Query: 3 STSTIQCYNCFDFGHYQYSCPQKSSADARGDKVGIVCYKCNNYGHFARECATE------- 55
+ + C+ C + GH CP + A G CYKC GH +R+C +
Sbjct: 66 AAGAMTCFRCGEAGHMSRDCPNSAKPGA---AKGFECYKCGQEGHLSRDCPSSQGGSRGG 122
Query: 56 ----------------SVTCYNCSGQGHVAKDC-------TVKSSIICYNCNSSGHFARN 92
TCY C GH+++DC + CY C +GH +R+
Sbjct: 123 YGQKRGRSGAQGGYSGDRTCYKCGDAGHISRDCPNGQGGYSGAGDRTCYKCGDAGHISRD 182
Query: 93 CPND-------SSKRCYACHQAGHMAKECPGQTAGKSPEPVVDMSLTCYVCGHQGHLSYD 145
CPN ++CY C ++GHM++ECP S CY CG GH+S +
Sbjct: 183 CPNGQGGYSGAGDRKCYKCGESGHMSRECP------SAGSTGSGDRACYKCGKPGHISRE 236
Query: 146 C 146
C
Sbjct: 237 C 237
Score = 68.6 bits (166), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 41/131 (31%), Positives = 56/131 (42%), Gaps = 27/131 (20%)
Query: 9 CYNCFDFGHYQYSCPQKSSA-DARGDKVGIVCYKCNNYGHFAREC--------ATESVTC 59
CY C D GH CP GD+ CYKC + GH +R+C C
Sbjct: 142 CYKCGDAGHISRDCPNGQGGYSGAGDRT---CYKCGDAGHISRDCPNGQGGYSGAGDRKC 198
Query: 60 YNCSGQGHVAKDCTVKSSI-----ICYNCNSSGHFARNCPN----------DSSKRCYAC 104
Y C GH++++C S CY C GH +R CP + CY C
Sbjct: 199 YKCGESGHMSRECPSAGSTGSGDRACYKCGKPGHISRECPEAGGSYGGSRGGGDRTCYKC 258
Query: 105 HQAGHMAKECP 115
+AGH++++CP
Sbjct: 259 GEAGHISRDCP 269
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/111 (31%), Positives = 46/111 (41%), Gaps = 20/111 (18%)
Query: 2 SSTSTIQCYNCFDFGHYQYSCPQKSSA-DARGDKVGIVCYKCNNYGHFARECATESVT-- 58
S CY C D GH CP GD+ CYKC GH +REC + T
Sbjct: 163 SGAGDRTCYKCGDAGHISRDCPNGQGGYSGAGDRK---CYKCGESGHMSRECPSAGSTGS 219
Query: 59 ----CYNCSGQGHVAKDC----------TVKSSIICYNCNSSGHFARNCPN 95
CY C GH++++C CY C +GH +R+CP+
Sbjct: 220 GDRACYKCGKPGHISRECPEAGGSYGGSRGGGDRTCYKCGEAGHISRDCPS 270
>sp|O65639|CSP1_ARATH Cold shock protein 1 OS=Arabidopsis thaliana GN=CSP1 PE=2 SV=1
Length = 299
Score = 88.6 bits (218), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 58/170 (34%), Positives = 76/170 (44%), Gaps = 34/170 (20%)
Query: 9 CYNCFDFGHYQYSCPQKSSADARGDKVG--IVCYKCNNYGHFARECATESV--------- 57
CYNC D GH+ C + D RG G CY C + GH AR+C +SV
Sbjct: 134 CYNCGDTGHFARDCTSAGNGDQRGATKGGNDGCYTCGDVGHVARDCTQKSVGNGDQRGAV 193
Query: 58 -----TCYNCSGQGHVAKDCTVK-----------SSIICYNCNSSGHFARNCPNDS--SK 99
CY C GH A+DCT K S CY+C GH AR+C S+
Sbjct: 194 KGGNDGCYTCGDVGHFARDCTQKVAAGNVRSGGGGSGTCYSCGGVGHIARDCATKRQPSR 253
Query: 100 RCYACHQAGHMAKECPGQTAGKSPEPVVDMSLTCYVCGHQGHLSYDCKLV 149
CY C +GH+A++C + +G CY CG +GH + +C V
Sbjct: 254 GCYQCGGSGHLARDCDQRGSGGGGNDNA-----CYKCGKEGHFARECSSV 298
Score = 73.6 bits (179), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 58/176 (32%), Positives = 73/176 (41%), Gaps = 47/176 (26%)
Query: 9 CYNCFDFGHYQYSC--PQKSSADARGDKVGIVCYKCNNYGHFARECATE----------- 55
CYNC + GH C R + G CY C + GHFAR+C +
Sbjct: 102 CYNCGELGHISKDCGIGGGGGGGERRSRGGEGCYNCGDTGHFARDCTSAGNGDQRGATKG 161
Query: 56 -SVTCYNCSGQGHVAKDCTVKS-------------SIICYNCNSSGHFARNCP------- 94
+ CY C GHVA+DCT KS + CY C GHFAR+C
Sbjct: 162 GNDGCYTCGDVGHVARDCTQKSVGNGDQRGAVKGGNDGCYTCGDVGHFARDCTQKVAAGN 221
Query: 95 ----NDSSKRCYACHQAGHMAKECPGQTAGKSPEPVVDMSLTCYVCGHQGHLSYDC 146
S CY+C GH+A++C +P S CY CG GHL+ DC
Sbjct: 222 VRSGGGGSGTCYSCGGVGHIARDCA-----TKRQP----SRGCYQCGGSGHLARDC 268
>sp|Q3T0Q6|CNBP_BOVIN Cellular nucleic acid-binding protein OS=Bos taurus GN=CNBP PE=2
SV=1
Length = 170
Score = 88.2 bits (217), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 50/165 (30%), Positives = 76/165 (46%), Gaps = 21/165 (12%)
Query: 5 STIQCYNCFDFGHYQYSCPQKSSADAR-----------GDKVGIVCYKCNNYGHFARECA 53
S+ +C+ C GH+ CP + +CY+C GH A++C
Sbjct: 2 SSNECFKCGRSGHWARECPTGGGRGRGMRSRGRGFQFVSSSLPDICYRCGESGHLAKDCD 61
Query: 54 TESVTCYNCSGQGHVAKDC---TVKSSIICYNCNSSGHFARNCPNDSSKRCYACHQAGHM 110
+ CYNC GH+AKDC + CYNC GH AR+C + ++CY+C + GH+
Sbjct: 62 LQEDACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQKCYSCGEFGHI 121
Query: 111 AKECP-------GQTAGKSPEPVVDMSLTCYVCGHQGHLSYDCKL 148
K+C G+T + + CY CG GHL+ +C +
Sbjct: 122 QKDCTKVKCYRCGETGHVAINCSKTSEVNCYRCGESGHLARECTI 166
Score = 68.6 bits (166), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 45/136 (33%), Positives = 59/136 (43%), Gaps = 36/136 (26%)
Query: 39 CYKCNNYGHFARECATESV---------------------TCYNCSGQGHVAKDCTVKSS 77
C+KC GH+AREC T CY C GH+AKDC ++
Sbjct: 6 CFKCGRSGHWARECPTGGGRGRGMRSRGRGFQFVSSSLPDICYRCGESGHLAKDCDLQED 65
Query: 78 IICYNCNSSGHFARNCPNDSSKR---CYACHQAGHMAKECPGQTAGKSPEPVVDMSLTCY 134
CYNC GH A++C +R CY C + GH+A++C K CY
Sbjct: 66 A-CYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQK-----------CY 113
Query: 135 VCGHQGHLSYDCKLVQ 150
CG GH+ DC V+
Sbjct: 114 SCGEFGHIQKDCTKVK 129
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 39/71 (54%), Gaps = 13/71 (18%)
Query: 8 QCYNCFDFGHYQYSCPQKSSADARGDKVGIVCYKCNNYGHFARECA-TESVTCYNCSGQG 66
+CY+C +FGH Q C + + CY+C GH A C+ T V CY C G
Sbjct: 111 KCYSCGEFGHIQKDCTK------------VKCYRCGETGHVAINCSKTSEVNCYRCGESG 158
Query: 67 HVAKDCTVKSS 77
H+A++CT++++
Sbjct: 159 HLARECTIEAT 169
>sp|P62634|CNBP_RAT Cellular nucleic acid-binding protein OS=Rattus norvegicus GN=Cnbp
PE=2 SV=1
Length = 177
Score = 86.3 bits (212), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 52/172 (30%), Positives = 78/172 (45%), Gaps = 28/172 (16%)
Query: 5 STIQCYNCFDFGHYQYSCPQKSSADA-------------RG-----DKVGIVCYKCNNYG 46
S+ +C+ C GH+ CP RG + +CY+C G
Sbjct: 2 SSNECFKCGRSGHWARECPTGGGRGRGMRSRGRGGFTSDRGFQFVSSSLPDICYRCGESG 61
Query: 47 HFARECATESVTCYNCSGQGHVAKDC---TVKSSIICYNCNSSGHFARNCPNDSSKRCYA 103
H A++C + CYNC GH+AKDC + CYNC GH AR+C + ++CY+
Sbjct: 62 HLAKDCDLQEDACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQKCYS 121
Query: 104 CHQAGHMAKECP-------GQTAGKSPEPVVDMSLTCYVCGHQGHLSYDCKL 148
C + GH+ K+C G+T + + CY CG GHL+ +C +
Sbjct: 122 CGEFGHIQKDCTKVKCYRCGETGHVAINCSKTSEVNCYRCGESGHLARECTI 173
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 39/71 (54%), Gaps = 13/71 (18%)
Query: 8 QCYNCFDFGHYQYSCPQKSSADARGDKVGIVCYKCNNYGHFARECA-TESVTCYNCSGQG 66
+CY+C +FGH Q C + + CY+C GH A C+ T V CY C G
Sbjct: 118 KCYSCGEFGHIQKDCTK------------VKCYRCGETGHVAINCSKTSEVNCYRCGESG 165
Query: 67 HVAKDCTVKSS 77
H+A++CT++++
Sbjct: 166 HLARECTIEAT 176
>sp|Q5R5R5|CNBP_PONAB Cellular nucleic acid-binding protein OS=Pongo abelii GN=CNBP PE=2
SV=1
Length = 177
Score = 86.3 bits (212), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 52/172 (30%), Positives = 78/172 (45%), Gaps = 28/172 (16%)
Query: 5 STIQCYNCFDFGHYQYSCPQKSSADA-------------RG-----DKVGIVCYKCNNYG 46
S+ +C+ C GH+ CP RG + +CY+C G
Sbjct: 2 SSNECFKCGRSGHWARECPTGGGRGRGMRSRGRGGFTSDRGFQFVSSSLPDICYRCGESG 61
Query: 47 HFARECATESVTCYNCSGQGHVAKDC---TVKSSIICYNCNSSGHFARNCPNDSSKRCYA 103
H A++C + CYNC GH+AKDC + CYNC GH AR+C + ++CY+
Sbjct: 62 HLAKDCDLQEDACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQKCYS 121
Query: 104 CHQAGHMAKECP-------GQTAGKSPEPVVDMSLTCYVCGHQGHLSYDCKL 148
C + GH+ K+C G+T + + CY CG GHL+ +C +
Sbjct: 122 CGEFGHIQKDCTKVKCYRCGETGHVAINCSKTSEVNCYRCGESGHLARECTI 173
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 39/71 (54%), Gaps = 13/71 (18%)
Query: 8 QCYNCFDFGHYQYSCPQKSSADARGDKVGIVCYKCNNYGHFARECA-TESVTCYNCSGQG 66
+CY+C +FGH Q C + + CY+C GH A C+ T V CY C G
Sbjct: 118 KCYSCGEFGHIQKDCTK------------VKCYRCGETGHVAINCSKTSEVNCYRCGESG 165
Query: 67 HVAKDCTVKSS 77
H+A++CT++++
Sbjct: 166 HLARECTIEAT 176
>sp|P62633|CNBP_HUMAN Cellular nucleic acid-binding protein OS=Homo sapiens GN=CNBP PE=1
SV=1
Length = 177
Score = 86.3 bits (212), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 52/172 (30%), Positives = 78/172 (45%), Gaps = 28/172 (16%)
Query: 5 STIQCYNCFDFGHYQYSCPQKSSADA-------------RG-----DKVGIVCYKCNNYG 46
S+ +C+ C GH+ CP RG + +CY+C G
Sbjct: 2 SSNECFKCGRSGHWARECPTGGGRGRGMRSRGRGGFTSDRGFQFVSSSLPDICYRCGESG 61
Query: 47 HFARECATESVTCYNCSGQGHVAKDC---TVKSSIICYNCNSSGHFARNCPNDSSKRCYA 103
H A++C + CYNC GH+AKDC + CYNC GH AR+C + ++CY+
Sbjct: 62 HLAKDCDLQEDACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQKCYS 121
Query: 104 CHQAGHMAKECP-------GQTAGKSPEPVVDMSLTCYVCGHQGHLSYDCKL 148
C + GH+ K+C G+T + + CY CG GHL+ +C +
Sbjct: 122 CGEFGHIQKDCTKVKCYRCGETGHVAINCSKTSEVNCYRCGESGHLARECTI 173
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 39/71 (54%), Gaps = 13/71 (18%)
Query: 8 QCYNCFDFGHYQYSCPQKSSADARGDKVGIVCYKCNNYGHFARECA-TESVTCYNCSGQG 66
+CY+C +FGH Q C + + CY+C GH A C+ T V CY C G
Sbjct: 118 KCYSCGEFGHIQKDCTK------------VKCYRCGETGHVAINCSKTSEVNCYRCGESG 165
Query: 67 HVAKDCTVKSS 77
H+A++CT++++
Sbjct: 166 HLARECTIEAT 176
>sp|O42395|CNBP_CHICK Cellular nucleic acid-binding protein OS=Gallus gallus GN=CNBP PE=2
SV=1
Length = 172
Score = 85.1 bits (209), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 51/167 (30%), Positives = 76/167 (45%), Gaps = 23/167 (13%)
Query: 5 STIQCYNCFDFGHYQYSCPQKSSADAR------------GDKVGIVCYKCNNYGHFAREC 52
S+ +C+ C GH+ CP + +CY+C GH A++C
Sbjct: 2 SSNECFKCGRTGHWARECPTGIGRGRGMRSRGRAGFQFMSSSLPDICYRCGESGHLAKDC 61
Query: 53 -ATESVTCYNCSGQGHVAKDCT---VKSSIICYNCNSSGHFARNCPNDSSKRCYACHQAG 108
E CYNC GH+AKDC + CYNC GH AR+C + ++CY+C + G
Sbjct: 62 DLQEDKACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQKCYSCGEFG 121
Query: 109 HMAKECP-------GQTAGKSPEPVVDMSLTCYVCGHQGHLSYDCKL 148
H+ K+C G+T + + CY CG GHL+ +C +
Sbjct: 122 HIQKDCTKVKCYRCGETGHVAINCSKTSEVNCYRCGESGHLARECTI 168
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 39/71 (54%), Gaps = 13/71 (18%)
Query: 8 QCYNCFDFGHYQYSCPQKSSADARGDKVGIVCYKCNNYGHFARECA-TESVTCYNCSGQG 66
+CY+C +FGH Q C + + CY+C GH A C+ T V CY C G
Sbjct: 113 KCYSCGEFGHIQKDCTK------------VKCYRCGETGHVAINCSKTSEVNCYRCGESG 160
Query: 67 HVAKDCTVKSS 77
H+A++CT++++
Sbjct: 161 HLARECTIEAT 171
>sp|P53996|CNBP_MOUSE Cellular nucleic acid-binding protein OS=Mus musculus GN=Cnbp PE=2
SV=2
Length = 178
Score = 83.6 bits (205), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 53/173 (30%), Positives = 78/173 (45%), Gaps = 29/173 (16%)
Query: 5 STIQCYNCFDFGHYQYSCPQKSSADA-------------RG-----DKVGIVCYKCNNYG 46
S+ +C+ C GH+ CP RG + +CY+C G
Sbjct: 2 SSNECFKCGRSGHWARECPTGGGRGRGMRSRGRGGFTSDRGFQFVSSSLPDICYRCGESG 61
Query: 47 HFAREC-ATESVTCYNCSGQGHVAKDCT---VKSSIICYNCNSSGHFARNCPNDSSKRCY 102
H A++C E CYNC GH+AKDC + CYNC GH AR+C + ++CY
Sbjct: 62 HLAKDCDLQEDEACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQKCY 121
Query: 103 ACHQAGHMAKECP-------GQTAGKSPEPVVDMSLTCYVCGHQGHLSYDCKL 148
+C + GH+ K+C G+T + + CY CG GHL+ +C +
Sbjct: 122 SCGEFGHIQKDCTKVKCYRCGETGHVAINCSKTSEVNCYRCGESGHLARECTI 174
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 39/71 (54%), Gaps = 13/71 (18%)
Query: 8 QCYNCFDFGHYQYSCPQKSSADARGDKVGIVCYKCNNYGHFARECA-TESVTCYNCSGQG 66
+CY+C +FGH Q C + + CY+C GH A C+ T V CY C G
Sbjct: 119 KCYSCGEFGHIQKDCTK------------VKCYRCGETGHVAINCSKTSEVNCYRCGESG 166
Query: 67 HVAKDCTVKSS 77
H+A++CT++++
Sbjct: 167 HLARECTIEAT 177
>sp|P53849|GIS2_YEAST Zinc finger protein GIS2 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=GIS2 PE=1 SV=1
Length = 153
Score = 77.0 bits (188), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 44/118 (37%), Positives = 62/118 (52%), Gaps = 24/118 (20%)
Query: 8 QCYNCFDFGHYQYSCPQKSSADARGDKVGIVCYKCNNYGHFARECAT-------ESVTCY 60
QCYNC + GH + C + C+ CN GH +REC V+CY
Sbjct: 48 QCYNCGETGHVRSECTVQR------------CFNCNQTGHISRECPEPKKTSRFSKVSCY 95
Query: 61 NCSGQGHVAKDCTVK---SSIICYNCNSSGHFARNCPNDSSKRCYACHQAGHMAKECP 115
C G H+AKDC + S + CY C +GH +R+C ND + CY C++ GH++K+CP
Sbjct: 96 KCGGPNHMAKDCMKEDGISGLKCYTCGQAGHMSRDCQND--RLCYNCNETGHISKDCP 151
Score = 76.6 bits (187), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 43/113 (38%), Positives = 63/113 (55%), Gaps = 14/113 (12%)
Query: 38 VCYKCNNYGHFARECATESVTCYNCSGQGHVAKDCTVKSSII---CYNCNSSGHFARNCP 94
CY C GH A +C +E + CYNC+ GHV DCT+ ++ CYNC +GH C
Sbjct: 5 ACYVCGKIGHLAEDCDSERL-CYNCNKPGHVQTDCTMPRTVEFKQCYNCGETGHVRSEC- 62
Query: 95 NDSSKRCYACHQAGHMAKECPGQTAGKSPEPVVDMS-LTCYVCGHQGHLSYDC 146
+ +RC+ C+Q GH+++ECP P+ S ++CY CG H++ DC
Sbjct: 63 --TVQRCFNCNQTGHISRECP------EPKKTSRFSKVSCYKCGGPNHMAKDC 107
Score = 76.6 bits (187), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 52/149 (34%), Positives = 64/149 (42%), Gaps = 32/149 (21%)
Query: 9 CYNCFDFGHYQYSCPQKSSADARGDKVGIVCYKCNNYGHFARECA----TESVTCYNCSG 64
CY C GH C + +CY CN GH +C E CYNC
Sbjct: 6 CYVCGKIGHLAEDCDSER-----------LCYNCNKPGHVQTDCTMPRTVEFKQCYNCGE 54
Query: 65 QGHVAKDCTVKSSIICYNCNSSGHFARNCPND------SSKRCYACHQAGHMAKECPGQT 118
GHV +CTV+ C+NCN +GH +R CP S CY C HMAK+C +
Sbjct: 55 TGHVRSECTVQR---CFNCNQTGHISRECPEPKKTSRFSKVSCYKCGGPNHMAKDCMKED 111
Query: 119 AGKSPEPVVDMSLTCYVCGHQGHLSYDCK 147
L CY CG GH+S DC+
Sbjct: 112 GISG--------LKCYTCGQAGHMSRDCQ 132
Score = 70.9 bits (172), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 46/147 (31%), Positives = 65/147 (44%), Gaps = 30/147 (20%)
Query: 9 CYNCFDFGHYQYSCPQKSSADARGDKVGIVCYKCNNYGHFARECATESVTCYNCSGQGHV 68
CYNC GH Q C + + + CY C GH EC + C+NC+ GH+
Sbjct: 25 CYNCNKPGHVQTDCTMPRTVEFK------QCYNCGETGHVRSECTVQR--CFNCNQTGHI 76
Query: 69 AKDCTVK------SSIICYNCNSSGHFARNCPND---SSKRCYACHQAGHMAKECPGQTA 119
+++C S + CY C H A++C + S +CY C QAGHM+++C
Sbjct: 77 SRECPEPKKTSRFSKVSCYKCGGPNHMAKDCMKEDGISGLKCYTCGQAGHMSRDCQN--- 133
Query: 120 GKSPEPVVDMSLTCYVCGHQGHLSYDC 146
CY C GH+S DC
Sbjct: 134 ----------DRLCYNCNETGHISKDC 150
Score = 64.3 bits (155), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 37/99 (37%), Positives = 55/99 (55%), Gaps = 10/99 (10%)
Query: 1 MSSTSTIQ-CYNCFDFGHYQYSCPQKSSADARGDKVGIVCYKCNNYGHFARECATES--- 56
+ S T+Q C+NC GH CP+ +R KV CYKC H A++C E
Sbjct: 58 VRSECTVQRCFNCNQTGHISRECPEPKKT-SRFSKVS--CYKCGGPNHMAKDCMKEDGIS 114
Query: 57 -VTCYNCSGQGHVAKDCTVKSSIICYNCNSSGHFARNCP 94
+ CY C GH+++DC ++ +CYNCN +GH +++CP
Sbjct: 115 GLKCYTCGQAGHMSRDC--QNDRLCYNCNETGHISKDCP 151
Score = 31.2 bits (69), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 23/52 (44%), Gaps = 13/52 (25%)
Query: 97 SSKRCYACHQAGHMAKECPGQTAGKSPEPVVDMSLTCYVCGHQGHLSYDCKL 148
S K CY C + GH+A++C D CY C GH+ DC +
Sbjct: 2 SQKACYVCGKIGHLAEDC-------------DSERLCYNCNKPGHVQTDCTM 40
>sp|P36627|BYR3_SCHPO Cellular nucleic acid-binding protein homolog
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=byr3 PE=4 SV=1
Length = 179
Score = 76.6 bits (187), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 48/126 (38%), Positives = 68/126 (53%), Gaps = 11/126 (8%)
Query: 34 KVGIVCYKCNNYGHFARECATESVTCYNCSGQGHVAKDCT-VKSSIICYNCNSSGHFARN 92
+ G CY C GH AREC S+ CYNC+ GH A +CT + CY C ++GH R+
Sbjct: 14 RPGPRCYNCGENGHQARECTKGSI-CYNCNQTGHKASECTEPQQEKTCYACGTAGHLVRD 72
Query: 93 CPNDSSKR----CYACHQAGHMAKECPG---QTAGKSPEPVVDMSLTCYVCGHQGHLSYD 145
CP+ + R CY C + GH+A++C Q+ G+ +M+ CY CG GH + D
Sbjct: 73 CPSSPNPRQGAECYKCGRVGHIARDCRTNGQQSGGRFGGHRSNMN--CYACGSYGHQARD 130
Query: 146 CKLVQK 151
C + K
Sbjct: 131 CTMGVK 136
Score = 73.9 bits (180), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 51/158 (32%), Positives = 68/158 (43%), Gaps = 42/158 (26%)
Query: 8 QCYNCFDFGHYQYSCPQKSSADARGDKVGIVCYKCNNYGHFARECAT--ESVTCYNCSGQ 65
+CYNC + GH C + G +CY CN GH A EC + TCY C
Sbjct: 18 RCYNCGENGHQARECTK-----------GSICYNCNQTGHKASECTEPQQEKTCYACGTA 66
Query: 66 GHVAKDC----TVKSSIICYNCNSSGHFARNCPND------------SSKRCYACHQAGH 109
GH+ +DC + CY C GH AR+C + S+ CYAC GH
Sbjct: 67 GHLVRDCPSSPNPRQGAECYKCGRVGHIARDCRTNGQQSGGRFGGHRSNMNCYACGSYGH 126
Query: 110 MAKECPGQTAGKSPEPVVDMSLTCYVCGHQGHLSYDCK 147
A++C M + CY CG GH S++C+
Sbjct: 127 QARDC-------------TMGVKCYSCGKIGHRSFECQ 151
Score = 64.3 bits (155), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 46/155 (29%), Positives = 65/155 (41%), Gaps = 37/155 (23%)
Query: 9 CYNCFDFGHYQYSCPQKSSADARGDKVGIVCYKCNNYGHFARECAT-----ESVTCYNCS 63
CYNC GH C + CY C GH R+C + + CY C
Sbjct: 38 CYNCNQTGHKASECTEPQQEK--------TCYACGTAGHLVRDCPSSPNPRQGAECYKCG 89
Query: 64 GQGHVAKDCTV------------KSSIICYNCNSSGHFARNCPNDSSKRCYACHQAGHMA 111
GH+A+DC +S++ CY C S GH AR+C +CY+C + GH +
Sbjct: 90 RVGHIARDCRTNGQQSGGRFGGHRSNMNCYACGSYGHQARDC--TMGVKCYSCGKIGHRS 147
Query: 112 KECPGQTAGKSPEPVVDMSLTCYVCGHQGHLSYDC 146
EC + G+ CY C GH++ +C
Sbjct: 148 FECQQASDGQ----------LCYKCNQPGHIAVNC 172
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 35/71 (49%), Gaps = 13/71 (18%)
Query: 5 STIQCYNCFDFGHYQYSCPQKSSADARGDKVGIVCYKCNNYGHFAREC--ATESVTCYNC 62
S + CY C +GH AR +G+ CY C GH + EC A++ CY C
Sbjct: 114 SNMNCYACGSYGH-----------QARDCTMGVKCYSCGKIGHRSFECQQASDGQLCYKC 162
Query: 63 SGQGHVAKDCT 73
+ GH+A +CT
Sbjct: 163 NQPGHIAVNCT 173
Score = 37.4 bits (85), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 26/54 (48%), Gaps = 8/54 (14%)
Query: 4 TSTIQCYNCFDFGHYQYSCPQKSSADARGDKVGIVCYKCNNYGHFARECATESV 57
T ++CY+C GH + C Q S G +CYKCN GH A C + +
Sbjct: 132 TMGVKCYSCGKIGHRSFECQQASD--------GQLCYKCNQPGHIAVNCTSPVI 177
>sp|O76743|GLH4_CAEEL ATP-dependent RNA helicase glh-4 OS=Caenorhabditis elegans GN=glh-4
PE=2 SV=2
Length = 1156
Score = 70.5 bits (171), Expect = 4e-12, Method: Composition-based stats.
Identities = 41/116 (35%), Positives = 49/116 (42%), Gaps = 15/116 (12%)
Query: 39 CYKCNNYGHFARECATESVT---CYNCSGQGHVAKDCTVKSSI--ICYNCNSSGHFARNC 93
C+ C GH ++EC V C NC GH A DC C NC GHFA +C
Sbjct: 572 CHNCGEEGHISKECDKPKVPRFPCRNCEQLGHFASDCDQPRVPRGPCRNCGIEGHFAVDC 631
Query: 94 PNDSSKR--CYACHQAGHMAKECPGQTAGKSP-EPVVDMSLTCYVCGHQGHLSYDC 146
R C C Q GH AK+C + P EP C C +GH Y+C
Sbjct: 632 DQPKVPRGPCRNCGQEGHFAKDCQNERVRMEPTEP-------CRRCAEEGHWGYEC 680
Score = 66.6 bits (161), Expect = 5e-11, Method: Composition-based stats.
Identities = 38/117 (32%), Positives = 49/117 (41%), Gaps = 17/117 (14%)
Query: 9 CYNCFDFGHYQYSCPQKSSADARGDKVGIVCYKCNNYGHFARECATESVT---CYNCSGQ 65
C+NC + GH C + C C GHFA +C V C NC +
Sbjct: 572 CHNCGEEGHISKECDKPKVPR-------FPCRNCEQLGHFASDCDQPRVPRGPCRNCGIE 624
Query: 66 GHVAKDCTVKSSI--ICYNCNSSGHFARNCPNDS-----SKRCYACHQAGHMAKECP 115
GH A DC C NC GHFA++C N+ ++ C C + GH ECP
Sbjct: 625 GHFAVDCDQPKVPRGPCRNCGQEGHFAKDCQNERVRMEPTEPCRRCAEEGHWGYECP 681
Score = 58.5 bits (140), Expect = 1e-08, Method: Composition-based stats.
Identities = 30/93 (32%), Positives = 41/93 (44%), Gaps = 13/93 (13%)
Query: 59 CYNCSGQGHVAKDCTVKS--SIICYNCNSSGHFARNCPNDSSKR--CYACHQAGHMAKEC 114
C+NC +GH++K+C C NC GHFA +C R C C GH A +C
Sbjct: 572 CHNCGEEGHISKECDKPKVPRFPCRNCEQLGHFASDCDQPRVPRGPCRNCGIEGHFAVDC 631
Query: 115 PGQTAGKSPEPVVDMSLTCYVCGHQGHLSYDCK 147
+ P C CG +GH + DC+
Sbjct: 632 DQPKVPRGP---------CRNCGQEGHFAKDCQ 655
>sp|Q8WW36|ZCH13_HUMAN Zinc finger CCHC domain-containing protein 13 OS=Homo sapiens
GN=ZCCHC13 PE=2 SV=1
Length = 166
Score = 68.2 bits (165), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/112 (33%), Positives = 52/112 (46%), Gaps = 17/112 (15%)
Query: 38 VCYKCNNYGHFARECATESVTCYNCSGQGHVAKDCT---VKSSIICYNCNSSGHFARNCP 94
CY C G A+ C CYNC GH+AKDC + CY C GH AR+C
Sbjct: 46 TCYCCGESGRNAKNCVLLGNICYNCGRSGHIAKDCKDPKRERRQHCYTCGRLGHLARDCD 105
Query: 95 NDSSKRCYACHQAGHMAKECPGQTAGKSPEPVVDMSLTCYVCGHQGHLSYDC 146
++CY+C + GH+ K+C + CY CG GH++ +C
Sbjct: 106 RQKEQKCYSCGKLGHIQKDCA--------------QVKCYRCGEIGHVAINC 143
Score = 59.3 bits (142), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 40/139 (28%), Positives = 60/139 (43%), Gaps = 21/139 (15%)
Query: 2 SSTSTIQCYNCFDFGHYQYSCPQKSSADARGDKVGIVCYKCNNYGHFARECATESVT--- 58
S+T + CY C + G +C +G +CY C GH A++C
Sbjct: 40 STTLSYTCYCCGESGRNAKNCVL----------LGNICYNCGRSGHIAKDCKDPKRERRQ 89
Query: 59 -CYNCSGQGHVAKDCTVKSSIICYNCNSSGHFARNCPNDSSKRCYACHQAGHMAKEC--- 114
CY C GH+A+DC + CY+C GH ++C + +CY C + GH+A C
Sbjct: 90 HCYTCGRLGHLARDCDRQKEQKCYSCGKLGHIQKDC---AQVKCYRCGEIGHVAINCSKA 146
Query: 115 -PGQTAGKSPEPVVDMSLT 132
PGQ P ++
Sbjct: 147 RPGQLLPLRQIPTSSQGMS 165
>sp|Q94C69|CSP3_ARATH Cold shock domain-containing protein 3 OS=Arabidopsis thaliana
GN=CSP3 PE=2 SV=1
Length = 301
Score = 65.5 bits (158), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 57/183 (31%), Positives = 67/183 (36%), Gaps = 42/183 (22%)
Query: 2 SSTSTIQCYNCFDFGHYQYSCPQKSSADARGDKVGIV------CYKCNNYGHFARECATE 55
S S C+NC + GH C S + G G CY C + GHFAR+C
Sbjct: 89 SRGSGGNCFNCGEVGHMAKDCDGGSGGKSFGGGGGRRSGGEGECYMCGDVGHFARDCRQS 148
Query: 56 SVT-----------CYNCSGQGHVAKDC--------------TVKSSIICYNCNSSGHFA 90
CY+C GH+AKDC CY C GHFA
Sbjct: 149 GGGNSGGGGGGGRPCYSCGEVGHLAKDCRGGSGGNRYGGGGGRGSGGDGCYMCGGVGHFA 208
Query: 91 RNCPN-------DSSKRCYACHQAGHMAKECPGQTAGKSPEPVVDMSLTCYVCGHQGHLS 143
R+C CY C GH+AK C K P CY CG GHL+
Sbjct: 209 RDCRQNGGGNVGGGGSTCYTCGGVGHIAKVC----TSKIPSGGGGGGRACYECGGTGHLA 264
Query: 144 YDC 146
DC
Sbjct: 265 RDC 267
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 46/135 (34%), Positives = 57/135 (42%), Gaps = 29/135 (21%)
Query: 9 CYNCFDFGHYQYSCPQKSSADARGDKVGIV-----CYKCNNYGHFAREC--------ATE 55
CY+C + GH C S + G G CY C GHFAR+C
Sbjct: 163 CYSCGEVGHLAKDCRGGSGGNRYGGGGGRGSGGDGCYMCGGVGHFARDCRQNGGGNVGGG 222
Query: 56 SVTCYNCSGQGHVAKDCTVK-------SSIICYNCNSSGHFARNCPN---------DSSK 99
TCY C G GH+AK CT K CY C +GH AR+C S
Sbjct: 223 GSTCYTCGGVGHIAKVCTSKIPSGGGGGGRACYECGGTGHLARDCDRRGSGSSGGGGGSN 282
Query: 100 RCYACHQAGHMAKEC 114
+C+ C + GH A+EC
Sbjct: 283 KCFICGKEGHFAREC 297
Score = 60.8 bits (146), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 49/171 (28%), Positives = 68/171 (39%), Gaps = 32/171 (18%)
Query: 9 CYNCFDFGHYQYSCPQKSSADARGDKVGIV-CYKCNNYGHFARECATESVT--------- 58
CY C D GH+ C Q ++ G G CY C GH A++C S
Sbjct: 132 CYMCGDVGHFARDCRQSGGGNSGGGGGGGRPCYSCGEVGHLAKDCRGGSGGNRYGGGGGR 191
Query: 59 ------CYNCSGQGHVAKDC-------TVKSSIICYNCNSSGHFARNCPND-------SS 98
CY C G GH A+DC CY C GH A+ C +
Sbjct: 192 GSGGDGCYMCGGVGHFARDCRQNGGGNVGGGGSTCYTCGGVGHIAKVCTSKIPSGGGGGG 251
Query: 99 KRCYACHQAGHMAKECPGQTAGKSPEPVVDMSLTCYVCGHQGHLSYDCKLV 149
+ CY C GH+A++C + + S C++CG +GH + +C V
Sbjct: 252 RACYECGGTGHLARDCDRRGS--GSSGGGGGSNKCFICGKEGHFARECTSV 300
Score = 49.7 bits (117), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 46/117 (39%), Gaps = 28/117 (23%)
Query: 59 CYNCSGQGHVAKDC---------------TVKSSIICYNCNSSGHFARNCPNDSS----- 98
C+NC GH+AKDC CY C GHFAR+C
Sbjct: 96 CFNCGEVGHMAKDCDGGSGGKSFGGGGGRRSGGEGECYMCGDVGHFARDCRQSGGGNSGG 155
Query: 99 -----KRCYACHQAGHMAKEC---PGQTAGKSPEPVVDMSLTCYVCGHQGHLSYDCK 147
+ CY+C + GH+AK+C G CY+CG GH + DC+
Sbjct: 156 GGGGGRPCYSCGEVGHLAKDCRGGSGGNRYGGGGGRGSGGDGCYMCGGVGHFARDCR 212
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 28/61 (45%), Gaps = 4/61 (6%)
Query: 91 RNCPNDSSKRCYACHQAGHMAKECP----GQTAGKSPEPVVDMSLTCYVCGHQGHLSYDC 146
N S C+ C + GHMAK+C G++ G CY+CG GH + DC
Sbjct: 86 ENSSRGSGGNCFNCGEVGHMAKDCDGGSGGKSFGGGGGRRSGGEGECYMCGDVGHFARDC 145
Query: 147 K 147
+
Sbjct: 146 R 146
>sp|P05895|POL_SIVVT Gag-Pol polyprotein OS=Simian immunodeficiency virus agm.vervet
(isolate AGM TYO-1) GN=gag-pol PE=3 SV=2
Length = 1467
Score = 54.3 bits (129), Expect = 3e-07, Method: Composition-based stats.
Identities = 19/43 (44%), Positives = 24/43 (55%)
Query: 75 KSSIICYNCNSSGHFARNCPNDSSKRCYACHQAGHMAKECPGQ 117
+ + CYNC GH R CP RC C + GH+AK+C GQ
Sbjct: 399 RPPVKCYNCGKFGHMQRQCPEPRKMRCLKCGKPGHLAKDCRGQ 441
Score = 43.9 bits (102), Expect = 3e-04, Method: Composition-based stats.
Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 9/46 (19%)
Query: 7 IQCYNCFDFGHYQYSCPQKSSADARGDKVGIVCYKCNNYGHFAREC 52
++CYNC FGH Q CP+ + C KC GH A++C
Sbjct: 402 VKCYNCGKFGHMQRQCPEPRK---------MRCLKCGKPGHLAKDC 438
Score = 42.7 bits (99), Expect = 0.001, Method: Composition-based stats.
Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 11/48 (22%)
Query: 100 RCYACHQAGHMAKECPGQTAGKSPEPVVDMSLTCYVCGHQGHLSYDCK 147
+CY C + GHM ++C PEP + C CG GHL+ DC+
Sbjct: 403 KCYNCGKFGHMQRQC--------PEP---RKMRCLKCGKPGHLAKDCR 439
Score = 41.2 bits (95), Expect = 0.002, Method: Composition-based stats.
Identities = 14/37 (37%), Positives = 19/37 (51%)
Query: 57 VTCYNCSGQGHVAKDCTVKSSIICYNCNSSGHFARNC 93
V CYNC GH+ + C + C C GH A++C
Sbjct: 402 VKCYNCGKFGHMQRQCPEPRKMRCLKCGKPGHLAKDC 438
>sp|P27980|POL_SIVVG Gag-Pol polyprotein OS=Simian immunodeficiency virus agm.vervet
(isolate AGM3) GN=gag-pol PE=3 SV=2
Length = 1465
Score = 54.3 bits (129), Expect = 3e-07, Method: Composition-based stats.
Identities = 19/43 (44%), Positives = 24/43 (55%)
Query: 75 KSSIICYNCNSSGHFARNCPNDSSKRCYACHQAGHMAKECPGQ 117
+ + CYNC GH R CP RC C + GH+AK+C GQ
Sbjct: 399 RPPVKCYNCGKFGHMQRQCPEPRKMRCLKCGKPGHLAKDCRGQ 441
Score = 43.9 bits (102), Expect = 3e-04, Method: Composition-based stats.
Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 9/46 (19%)
Query: 7 IQCYNCFDFGHYQYSCPQKSSADARGDKVGIVCYKCNNYGHFAREC 52
++CYNC FGH Q CP+ + C KC GH A++C
Sbjct: 402 VKCYNCGKFGHMQRQCPEPRK---------MRCLKCGKPGHLAKDC 438
Score = 42.7 bits (99), Expect = 0.001, Method: Composition-based stats.
Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 11/48 (22%)
Query: 100 RCYACHQAGHMAKECPGQTAGKSPEPVVDMSLTCYVCGHQGHLSYDCK 147
+CY C + GHM ++C PEP + C CG GHL+ DC+
Sbjct: 403 KCYNCGKFGHMQRQC--------PEP---RKMRCLKCGKPGHLAKDCR 439
Score = 41.2 bits (95), Expect = 0.002, Method: Composition-based stats.
Identities = 14/37 (37%), Positives = 19/37 (51%)
Query: 57 VTCYNCSGQGHVAKDCTVKSSIICYNCNSSGHFARNC 93
V CYNC GH+ + C + C C GH A++C
Sbjct: 402 VKCYNCGKFGHMQRQCPEPRKMRCLKCGKPGHLAKDC 438
>sp|P17283|POL_SIVCZ Gag-Pol polyprotein OS=Simian immunodeficiency virus (isolate CPZ
GAB1) GN=gag-pol PE=3 SV=2
Length = 1384
Score = 53.1 bits (126), Expect = 6e-07, Method: Composition-based stats.
Identities = 20/43 (46%), Positives = 24/43 (55%)
Query: 75 KSSIICYNCNSSGHFARNCPNDSSKRCYACHQAGHMAKECPGQ 117
K I C+NC GH ARNC K C+ C Q GH K+C G+
Sbjct: 338 KRKIKCFNCGKEGHLARNCKAPRRKGCWRCGQEGHQMKDCTGR 380
Score = 44.3 bits (103), Expect = 3e-04, Method: Composition-based stats.
Identities = 19/43 (44%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Query: 32 GDKVGIVCYKCNNYGHFAREC-ATESVTCYNCSGQGHVAKDCT 73
G K I C+ C GH AR C A C+ C +GH KDCT
Sbjct: 336 GPKRKIKCFNCGKEGHLARNCKAPRRKGCWRCGQEGHQMKDCT 378
Score = 41.2 bits (95), Expect = 0.003, Method: Composition-based stats.
Identities = 12/37 (32%), Positives = 21/37 (56%)
Query: 57 VTCYNCSGQGHVAKDCTVKSSIICYNCNSSGHFARNC 93
+ C+NC +GH+A++C C+ C GH ++C
Sbjct: 341 IKCFNCGKEGHLARNCKAPRRKGCWRCGQEGHQMKDC 377
Score = 35.4 bits (80), Expect = 0.14, Method: Composition-based stats.
Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 11/47 (23%)
Query: 100 RCYACHQAGHMAKECPGQTAGKSPEPVVDMSLTCYVCGHQGHLSYDC 146
+C+ C + GH+A+ C K+P C+ CG +GH DC
Sbjct: 342 KCFNCGKEGHLARNC------KAPR-----RKGCWRCGQEGHQMKDC 377
Score = 31.2 bits (69), Expect = 2.5, Method: Composition-based stats.
Identities = 14/56 (25%), Positives = 24/56 (42%), Gaps = 13/56 (23%)
Query: 7 IQCYNCFDFGHYQYSC--PQKSSADARGDKVGIVCYKCNNYGHFARECATESVTCY 60
I+C+NC GH +C P++ C++C GH ++C V +
Sbjct: 341 IKCFNCGKEGHLARNCKAPRRKG-----------CWRCGQEGHQMKDCTGRQVNFF 385
>sp|P27978|GAG_SIVVG Gag polyprotein OS=Simian immunodeficiency virus agm.vervet
(isolate AGM3) GN=gag PE=3 SV=1
Length = 521
Score = 52.8 bits (125), Expect = 9e-07, Method: Composition-based stats.
Identities = 19/43 (44%), Positives = 24/43 (55%)
Query: 75 KSSIICYNCNSSGHFARNCPNDSSKRCYACHQAGHMAKECPGQ 117
+ + CYNC GH R CP RC C + GH+AK+C GQ
Sbjct: 399 RPPVKCYNCGKFGHMQRQCPEPRKMRCLKCGKPGHLAKDCRGQ 441
Score = 42.7 bits (99), Expect = 0.001, Method: Composition-based stats.
Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 9/46 (19%)
Query: 7 IQCYNCFDFGHYQYSCPQKSSADARGDKVGIVCYKCNNYGHFAREC 52
++CYNC FGH Q CP+ + C KC GH A++C
Sbjct: 402 VKCYNCGKFGHMQRQCPEPRK---------MRCLKCGKPGHLAKDC 438
Score = 40.8 bits (94), Expect = 0.003, Method: Composition-based stats.
Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 11/48 (22%)
Query: 100 RCYACHQAGHMAKECPGQTAGKSPEPVVDMSLTCYVCGHQGHLSYDCK 147
+CY C + GHM ++CP EP + C CG GHL+ DC+
Sbjct: 403 KCYNCGKFGHMQRQCP--------EP---RKMRCLKCGKPGHLAKDCR 439
>sp|Q1A249|POL_SIVEK Gag-Pol polyprotein OS=Simian immunodeficiency virus (isolate
EK505) GN=gag-pol PE=3 SV=3
Length = 1448
Score = 52.4 bits (124), Expect = 1e-06, Method: Composition-based stats.
Identities = 18/41 (43%), Positives = 24/41 (58%)
Query: 74 VKSSIICYNCNSSGHFARNCPNDSSKRCYACHQAGHMAKEC 114
++ +I C+NC GH ARNC K C+ C Q GH K+C
Sbjct: 389 IRKTIKCFNCGKEGHLARNCKAPRKKGCWKCGQEGHQMKDC 429
Score = 42.4 bits (98), Expect = 0.001, Method: Composition-based stats.
Identities = 12/39 (30%), Positives = 23/39 (58%)
Query: 55 ESVTCYNCSGQGHVAKDCTVKSSIICYNCNSSGHFARNC 93
+++ C+NC +GH+A++C C+ C GH ++C
Sbjct: 391 KTIKCFNCGKEGHLARNCKAPRKKGCWKCGQEGHQMKDC 429
Score = 42.0 bits (97), Expect = 0.002, Method: Composition-based stats.
Identities = 17/43 (39%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Query: 31 RGDKVGIVCYKCNNYGHFAREC-ATESVTCYNCSGQGHVAKDC 72
+G + I C+ C GH AR C A C+ C +GH KDC
Sbjct: 387 KGIRKTIKCFNCGKEGHLARNCKAPRKKGCWKCGQEGHQMKDC 429
Score = 36.6 bits (83), Expect = 0.060, Method: Composition-based stats.
Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 11/48 (22%)
Query: 100 RCYACHQAGHMAKECPGQTAGKSPEPVVDMSLTCYVCGHQGHLSYDCK 147
+C+ C + GH+A+ C K+P C+ CG +GH DC+
Sbjct: 394 KCFNCGKEGHLARNC------KAPR-----KKGCWKCGQEGHQMKDCR 430
Score = 34.3 bits (77), Expect = 0.33, Method: Composition-based stats.
Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 13/49 (26%)
Query: 6 TIQCYNCFDFGHYQYSC--PQKSSADARGDKVGIVCYKCNNYGHFAREC 52
TI+C+NC GH +C P+K C+KC GH ++C
Sbjct: 392 TIKCFNCGKEGHLARNCKAPRKKG-----------CWKCGQEGHQMKDC 429
>sp|Q89928|POL_HV2EH Gag-Pol polyprotein OS=Human immunodeficiency virus type 2 subtype
B (isolate EHO) GN=gag-pol PE=3 SV=3
Length = 1464
Score = 52.4 bits (124), Expect = 1e-06, Method: Composition-based stats.
Identities = 18/46 (39%), Positives = 27/46 (58%)
Query: 75 KSSIICYNCNSSGHFARNCPNDSSKRCYACHQAGHMAKECPGQTAG 120
K ++ C+NC +GH AR C + C+ C Q GH+ +CP + AG
Sbjct: 384 KRTVTCWNCGKAGHTARQCKAPRRQGCWKCGQQGHIMSKCPERQAG 429
Score = 48.9 bits (115), Expect = 1e-05, Method: Composition-based stats.
Identities = 22/70 (31%), Positives = 29/70 (41%), Gaps = 9/70 (12%)
Query: 56 SVTCYNCSGQGHVAKDCTVKSSIICYNCNSSGHFARNCPNDSSKRCYACHQAGHMAKECP 115
+VTC+NC GH A+ C C+ C GH CP QAG +
Sbjct: 386 TVTCWNCGKAGHTARQCKAPRRQGCWKCGQQGHIMSKCPE---------RQAGFLRVRPL 436
Query: 116 GQTAGKSPEP 125
G+ A + P P
Sbjct: 437 GKEASQFPRP 446
Score = 43.1 bits (100), Expect = 6e-04, Method: Composition-based stats.
Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Query: 26 SSADARGDKVGIVCYKCNNYGHFAREC-ATESVTCYNCSGQGHVAKDC 72
++A R K + C+ C GH AR+C A C+ C QGH+ C
Sbjct: 376 AAAQPRAGKRTVTCWNCGKAGHTARQCKAPRRQGCWKCGQQGHIMSKC 423
Score = 36.6 bits (83), Expect = 0.053, Method: Composition-based stats.
Identities = 22/65 (33%), Positives = 31/65 (47%), Gaps = 15/65 (23%)
Query: 85 SSGHFARNCPNDSSKR---CYACHQAGHMAKECPGQTAGKSPEPVVDMSLTCYVCGHQGH 141
S+ FA P + KR C+ C +AGH A++C K+P C+ CG QGH
Sbjct: 371 STNPFAAAQPR-AGKRTVTCWNCGKAGHTARQC------KAPR-----RQGCWKCGQQGH 418
Query: 142 LSYDC 146
+ C
Sbjct: 419 IMSKC 423
Score = 31.2 bits (69), Expect = 2.4, Method: Composition-based stats.
Identities = 14/49 (28%), Positives = 20/49 (40%), Gaps = 13/49 (26%)
Query: 6 TIQCYNCFDFGHYQYSC--PQKSSADARGDKVGIVCYKCNNYGHFAREC 52
T+ C+NC GH C P++ C+KC GH +C
Sbjct: 386 TVTCWNCGKAGHTARQCKAPRRQG-----------CWKCGQQGHIMSKC 423
>sp|P27973|POL_SIVV1 Gag-Pol polyprotein OS=Simian immunodeficiency virus agm.vervet
(isolate AGM155) GN=gag-pol PE=3 SV=2
Length = 1470
Score = 52.0 bits (123), Expect = 1e-06, Method: Composition-based stats.
Identities = 18/38 (47%), Positives = 22/38 (57%)
Query: 80 CYNCNSSGHFARNCPNDSSKRCYACHQAGHMAKECPGQ 117
CYNC GH R CP +C C + GH+AK+C GQ
Sbjct: 400 CYNCGKFGHMQRQCPEPRKIKCLKCGKPGHLAKDCRGQ 437
Score = 44.3 bits (103), Expect = 3e-04, Method: Composition-based stats.
Identities = 18/45 (40%), Positives = 22/45 (48%), Gaps = 9/45 (20%)
Query: 8 QCYNCFDFGHYQYSCPQKSSADARGDKVGIVCYKCNNYGHFAREC 52
+CYNC FGH Q CP+ I C KC GH A++C
Sbjct: 399 KCYNCGKFGHMQRQCPEPRK---------IKCLKCGKPGHLAKDC 434
Score = 43.5 bits (101), Expect = 5e-04, Method: Composition-based stats.
Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Query: 39 CYKCNNYGHFARECAT-ESVTCYNCSGQGHVAKDC 72
CY C +GH R+C + C C GH+AKDC
Sbjct: 400 CYNCGKFGHMQRQCPEPRKIKCLKCGKPGHLAKDC 434
Score = 42.7 bits (99), Expect = 0.001, Method: Composition-based stats.
Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 11/48 (22%)
Query: 100 RCYACHQAGHMAKECPGQTAGKSPEPVVDMSLTCYVCGHQGHLSYDCK 147
+CY C + GHM ++C PEP + C CG GHL+ DC+
Sbjct: 399 KCYNCGKFGHMQRQC--------PEP---RKIKCLKCGKPGHLAKDCR 435
Score = 41.6 bits (96), Expect = 0.002, Method: Composition-based stats.
Identities = 14/35 (40%), Positives = 18/35 (51%)
Query: 59 CYNCSGQGHVAKDCTVKSSIICYNCNSSGHFARNC 93
CYNC GH+ + C I C C GH A++C
Sbjct: 400 CYNCGKFGHMQRQCPEPRKIKCLKCGKPGHLAKDC 434
>sp|Q1A250|GAG_SIVEK Gag polyprotein OS=Simian immunodeficiency virus (isolate EK505)
GN=gag PE=3 SV=3
Length = 511
Score = 52.0 bits (123), Expect = 1e-06, Method: Composition-based stats.
Identities = 18/41 (43%), Positives = 24/41 (58%)
Query: 74 VKSSIICYNCNSSGHFARNCPNDSSKRCYACHQAGHMAKEC 114
++ +I C+NC GH ARNC K C+ C Q GH K+C
Sbjct: 389 IRKTIKCFNCGKEGHLARNCKAPRKKGCWKCGQEGHQMKDC 429
Score = 42.0 bits (97), Expect = 0.001, Method: Composition-based stats.
Identities = 12/39 (30%), Positives = 23/39 (58%)
Query: 55 ESVTCYNCSGQGHVAKDCTVKSSIICYNCNSSGHFARNC 93
+++ C+NC +GH+A++C C+ C GH ++C
Sbjct: 391 KTIKCFNCGKEGHLARNCKAPRKKGCWKCGQEGHQMKDC 429
Score = 41.6 bits (96), Expect = 0.002, Method: Composition-based stats.
Identities = 17/43 (39%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Query: 31 RGDKVGIVCYKCNNYGHFAREC-ATESVTCYNCSGQGHVAKDC 72
+G + I C+ C GH AR C A C+ C +GH KDC
Sbjct: 387 KGIRKTIKCFNCGKEGHLARNCKAPRKKGCWKCGQEGHQMKDC 429
Score = 36.2 bits (82), Expect = 0.082, Method: Composition-based stats.
Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 11/48 (22%)
Query: 100 RCYACHQAGHMAKECPGQTAGKSPEPVVDMSLTCYVCGHQGHLSYDCK 147
+C+ C + GH+A+ C K+P C+ CG +GH DC+
Sbjct: 394 KCFNCGKEGHLARNC------KAPR-----KKGCWKCGQEGHQMKDCR 430
Score = 33.5 bits (75), Expect = 0.44, Method: Composition-based stats.
Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 13/49 (26%)
Query: 6 TIQCYNCFDFGHYQYSC--PQKSSADARGDKVGIVCYKCNNYGHFAREC 52
TI+C+NC GH +C P+K C+KC GH ++C
Sbjct: 392 TIKCFNCGKEGHLARNCKAPRKKG-----------CWKCGQEGHQMKDC 429
>sp|P17282|GAG_SIVCZ Gag polyprotein OS=Simian immunodeficiency virus (isolate CPZ GAB1)
GN=gag PE=3 SV=1
Length = 508
Score = 52.0 bits (123), Expect = 1e-06, Method: Composition-based stats.
Identities = 20/43 (46%), Positives = 24/43 (55%)
Query: 75 KSSIICYNCNSSGHFARNCPNDSSKRCYACHQAGHMAKECPGQ 117
K I C+NC GH ARNC K C+ C Q GH K+C G+
Sbjct: 397 KRKIKCFNCGKEGHLARNCKAPRRKGCWRCGQEGHQMKDCTGR 439
Score = 42.7 bits (99), Expect = 8e-04, Method: Composition-based stats.
Identities = 19/43 (44%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Query: 32 GDKVGIVCYKCNNYGHFAREC-ATESVTCYNCSGQGHVAKDCT 73
G K I C+ C GH AR C A C+ C +GH KDCT
Sbjct: 395 GPKRKIKCFNCGKEGHLARNCKAPRRKGCWRCGQEGHQMKDCT 437
Score = 40.0 bits (92), Expect = 0.005, Method: Composition-based stats.
Identities = 12/37 (32%), Positives = 21/37 (56%)
Query: 57 VTCYNCSGQGHVAKDCTVKSSIICYNCNSSGHFARNC 93
+ C+NC +GH+A++C C+ C GH ++C
Sbjct: 400 IKCFNCGKEGHLARNCKAPRRKGCWRCGQEGHQMKDC 436
Score = 34.3 bits (77), Expect = 0.33, Method: Composition-based stats.
Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 11/47 (23%)
Query: 100 RCYACHQAGHMAKECPGQTAGKSPEPVVDMSLTCYVCGHQGHLSYDC 146
+C+ C + GH+A+ C K+P C+ CG +GH DC
Sbjct: 401 KCFNCGKEGHLARNC------KAPR-----RKGCWRCGQEGHQMKDC 436
Score = 30.0 bits (66), Expect = 6.1, Method: Composition-based stats.
Identities = 17/62 (27%), Positives = 27/62 (43%), Gaps = 16/62 (25%)
Query: 7 IQCYNCFDFGHYQYSC--PQKSSADARGDKVGIVCYKCNNYGHFARECATESVTCYNCSG 64
I+C+NC GH +C P++ C++C GH ++C V N G
Sbjct: 400 IKCFNCGKEGHLARNCKAPRRKG-----------CWRCGQEGHQMKDCTGRQV---NFLG 445
Query: 65 QG 66
+G
Sbjct: 446 KG 447
>sp|O12158|POL_HV192 Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype C (isolate 92BR025) GN=gag-pol PE=1 SV=2
Length = 1431
Score = 51.6 bits (122), Expect = 2e-06, Method: Composition-based stats.
Identities = 28/82 (34%), Positives = 39/82 (47%), Gaps = 2/82 (2%)
Query: 39 CYKCNNYGHFARECATESVTCYNCSGQGHVAKDCT-VKSSIICYNCNSSGHFARNCPNDS 97
C GH AR A E+++ N + +C K +I C+NC GH ARNC
Sbjct: 348 CQGVGGPGHKARVLA-EAMSKVNNTNIMMQRSNCKGPKRTIKCFNCGKEGHLARNCRAPR 406
Query: 98 SKRCYACHQAGHMAKECPGQTA 119
K C+ C + GH K+C + A
Sbjct: 407 KKGCWKCGKEGHQVKDCTERQA 428
Score = 47.0 bits (110), Expect = 5e-05, Method: Composition-based stats.
Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Query: 28 ADARGDKVGIVCYKCNNYGHFAREC-ATESVTCYNCSGQGHVAKDCTVKSS 77
++ +G K I C+ C GH AR C A C+ C +GH KDCT + +
Sbjct: 378 SNCKGPKRTIKCFNCGKEGHLARNCRAPRKKGCWKCGKEGHQVKDCTERQA 428
Score = 35.4 bits (80), Expect = 0.14, Method: Composition-based stats.
Identities = 24/90 (26%), Positives = 39/90 (43%), Gaps = 16/90 (17%)
Query: 59 CYNCSGQGHVAKDCTVKSSIICYNCNSSGHFAR-NCPN-DSSKRCYACHQAGHMAKECPG 116
C G GH A+ V + + N++ R NC + +C+ C + GH+A+ C
Sbjct: 348 CQGVGGPGHKAR---VLAEAMSKVNNTNIMMQRSNCKGPKRTIKCFNCGKEGHLARNC-- 402
Query: 117 QTAGKSPEPVVDMSLTCYVCGHQGHLSYDC 146
++P C+ CG +GH DC
Sbjct: 403 ----RAPR-----KKGCWKCGKEGHQVKDC 423
Score = 34.3 bits (77), Expect = 0.28, Method: Composition-based stats.
Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 13/49 (26%)
Query: 6 TIQCYNCFDFGHYQYSC--PQKSSADARGDKVGIVCYKCNNYGHFAREC 52
TI+C+NC GH +C P+K C+KC GH ++C
Sbjct: 386 TIKCFNCGKEGHLARNCRAPRKKG-----------CWKCGKEGHQVKDC 423
>sp|Q77373|POL_HV1AN Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group O
(isolate ANT70) GN=gag-pol PE=3 SV=3
Length = 1435
Score = 51.6 bits (122), Expect = 2e-06, Method: Composition-based stats.
Identities = 19/40 (47%), Positives = 23/40 (57%)
Query: 75 KSSIICYNCNSSGHFARNCPNDSSKRCYACHQAGHMAKEC 114
K +I C+NC GH ARNC K C+ C Q GH K+C
Sbjct: 391 KGTIKCFNCGKEGHIARNCRAPRKKGCWKCGQEGHQMKDC 430
Score = 46.6 bits (109), Expect = 6e-05, Method: Composition-based stats.
Identities = 17/64 (26%), Positives = 31/64 (48%)
Query: 56 SVTCYNCSGQGHVAKDCTVKSSIICYNCNSSGHFARNCPNDSSKRCYACHQAGHMAKECP 115
++ C+NC +GH+A++C C+ C GH ++C N GH A++
Sbjct: 393 TIKCFNCGKEGHIARNCRAPRKKGCWKCGQEGHQMKDCRNGKQFFRQILASGGHEARQLC 452
Query: 116 GQTA 119
+T+
Sbjct: 453 AETS 456
Score = 33.9 bits (76), Expect = 0.36, Method: Composition-based stats.
Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 13/49 (26%)
Query: 6 TIQCYNCFDFGHYQYSC--PQKSSADARGDKVGIVCYKCNNYGHFAREC 52
TI+C+NC GH +C P+K C+KC GH ++C
Sbjct: 393 TIKCFNCGKEGHIARNCRAPRKKG-----------CWKCGQEGHQMKDC 430
>sp|Q9Q720|POL_HV1V9 Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype H (isolate VI991) GN=gag-pol PE=3 SV=3
Length = 1436
Score = 51.6 bits (122), Expect = 2e-06, Method: Composition-based stats.
Identities = 19/45 (42%), Positives = 25/45 (55%)
Query: 75 KSSIICYNCNSSGHFARNCPNDSSKRCYACHQAGHMAKECPGQTA 119
+ ++ C NC GH ARNC K C+ C Q GH K+C G+ A
Sbjct: 390 RRTVKCSNCGKEGHIARNCRAPRKKGCWKCGQEGHQMKDCTGRQA 434
Score = 41.6 bits (96), Expect = 0.002, Method: Composition-based stats.
Identities = 19/70 (27%), Positives = 30/70 (42%), Gaps = 2/70 (2%)
Query: 56 SVTCYNCSGQGHVAKDCTVKSSIICYNCNSSGHFARNCPNDSSK--RCYACHQAGHMAKE 113
+V C NC +GH+A++C C+ C GH ++C + R Q G +
Sbjct: 392 TVKCSNCGKEGHIARNCRAPRKKGCWKCGQEGHQMKDCTGRQANFFRENLAFQQGKAREF 451
Query: 114 CPGQTAGKSP 123
P + SP
Sbjct: 452 PPEEARANSP 461
Score = 41.6 bits (96), Expect = 0.002, Method: Composition-based stats.
Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Query: 31 RGDKVGIVCYKCNNYGHFAREC-ATESVTCYNCSGQGHVAKDCT 73
+G + + C C GH AR C A C+ C +GH KDCT
Sbjct: 387 KGPRRTVKCSNCGKEGHIARNCRAPRKKGCWKCGQEGHQMKDCT 430
Score = 32.3 bits (72), Expect = 1.1, Method: Composition-based stats.
Identities = 14/47 (29%), Positives = 22/47 (46%), Gaps = 11/47 (23%)
Query: 100 RCYACHQAGHMAKECPGQTAGKSPEPVVDMSLTCYVCGHQGHLSYDC 146
+C C + GH+A+ C ++P C+ CG +GH DC
Sbjct: 394 KCSNCGKEGHIARNC------RAPR-----KKGCWKCGQEGHQMKDC 429
Score = 31.6 bits (70), Expect = 2.1, Method: Composition-based stats.
Identities = 15/49 (30%), Positives = 22/49 (44%), Gaps = 13/49 (26%)
Query: 6 TIQCYNCFDFGHYQYSC--PQKSSADARGDKVGIVCYKCNNYGHFAREC 52
T++C NC GH +C P+K C+KC GH ++C
Sbjct: 392 TVKCSNCGKEGHIARNCRAPRKKG-----------CWKCGQEGHQMKDC 429
>sp|Q9Q721|GAG_HV1V9 Gag polyprotein OS=Human immunodeficiency virus type 1 group M
subtype H (isolate VI991) GN=gag PE=3 SV=3
Length = 498
Score = 51.6 bits (122), Expect = 2e-06, Method: Composition-based stats.
Identities = 19/45 (42%), Positives = 25/45 (55%)
Query: 75 KSSIICYNCNSSGHFARNCPNDSSKRCYACHQAGHMAKECPGQTA 119
+ ++ C NC GH ARNC K C+ C Q GH K+C G+ A
Sbjct: 390 RRTVKCSNCGKEGHIARNCRAPRKKGCWKCGQEGHQMKDCTGRQA 434
Score = 41.6 bits (96), Expect = 0.002, Method: Composition-based stats.
Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Query: 31 RGDKVGIVCYKCNNYGHFAREC-ATESVTCYNCSGQGHVAKDCT 73
+G + + C C GH AR C A C+ C +GH KDCT
Sbjct: 387 KGPRRTVKCSNCGKEGHIARNCRAPRKKGCWKCGQEGHQMKDCT 430
Score = 41.2 bits (95), Expect = 0.002, Method: Composition-based stats.
Identities = 13/38 (34%), Positives = 21/38 (55%)
Query: 56 SVTCYNCSGQGHVAKDCTVKSSIICYNCNSSGHFARNC 93
+V C NC +GH+A++C C+ C GH ++C
Sbjct: 392 TVKCSNCGKEGHIARNCRAPRKKGCWKCGQEGHQMKDC 429
Score = 32.3 bits (72), Expect = 1.1, Method: Composition-based stats.
Identities = 14/47 (29%), Positives = 22/47 (46%), Gaps = 11/47 (23%)
Query: 100 RCYACHQAGHMAKECPGQTAGKSPEPVVDMSLTCYVCGHQGHLSYDC 146
+C C + GH+A+ C ++P C+ CG +GH DC
Sbjct: 394 KCSNCGKEGHIARNC------RAPR-----KKGCWKCGQEGHQMKDC 429
Score = 31.6 bits (70), Expect = 2.1, Method: Composition-based stats.
Identities = 15/49 (30%), Positives = 22/49 (44%), Gaps = 13/49 (26%)
Query: 6 TIQCYNCFDFGHYQYSC--PQKSSADARGDKVGIVCYKCNNYGHFAREC 52
T++C NC GH +C P+K C+KC GH ++C
Sbjct: 392 TVKCSNCGKEGHIARNCRAPRKKG-----------CWKCGQEGHQMKDC 429
>sp|O12157|GAG_HV192 Gag polyprotein OS=Human immunodeficiency virus type 1 group M
subtype C (isolate 92BR025) GN=gag PE=3 SV=3
Length = 496
Score = 51.6 bits (122), Expect = 2e-06, Method: Composition-based stats.
Identities = 28/82 (34%), Positives = 39/82 (47%), Gaps = 2/82 (2%)
Query: 39 CYKCNNYGHFARECATESVTCYNCSGQGHVAKDCT-VKSSIICYNCNSSGHFARNCPNDS 97
C GH AR A E+++ N + +C K +I C+NC GH ARNC
Sbjct: 348 CQGVGGPGHKARVLA-EAMSKVNNTNIMMQRSNCKGPKRTIKCFNCGKEGHLARNCRAPR 406
Query: 98 SKRCYACHQAGHMAKECPGQTA 119
K C+ C + GH K+C + A
Sbjct: 407 KKGCWKCGKEGHQVKDCTERQA 428
Score = 46.6 bits (109), Expect = 6e-05, Method: Composition-based stats.
Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Query: 28 ADARGDKVGIVCYKCNNYGHFAREC-ATESVTCYNCSGQGHVAKDCTVKSS 77
++ +G K I C+ C GH AR C A C+ C +GH KDCT + +
Sbjct: 378 SNCKGPKRTIKCFNCGKEGHLARNCRAPRKKGCWKCGKEGHQVKDCTERQA 428
Score = 35.0 bits (79), Expect = 0.19, Method: Composition-based stats.
Identities = 24/90 (26%), Positives = 39/90 (43%), Gaps = 16/90 (17%)
Query: 59 CYNCSGQGHVAKDCTVKSSIICYNCNSSGHFAR-NCPN-DSSKRCYACHQAGHMAKECPG 116
C G GH A+ V + + N++ R NC + +C+ C + GH+A+ C
Sbjct: 348 CQGVGGPGHKAR---VLAEAMSKVNNTNIMMQRSNCKGPKRTIKCFNCGKEGHLARNC-- 402
Query: 117 QTAGKSPEPVVDMSLTCYVCGHQGHLSYDC 146
++P C+ CG +GH DC
Sbjct: 403 ----RAPR-----KKGCWKCGKEGHQVKDC 423
Score = 33.9 bits (76), Expect = 0.34, Method: Composition-based stats.
Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 13/49 (26%)
Query: 6 TIQCYNCFDFGHYQYSC--PQKSSADARGDKVGIVCYKCNNYGHFAREC 52
TI+C+NC GH +C P+K C+KC GH ++C
Sbjct: 386 TIKCFNCGKEGHLARNCRAPRKKG-----------CWKCGKEGHQVKDC 423
>sp|Q9IDV9|POL_HV1YB Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group N
(isolate YBF106) GN=gag-pol PE=3 SV=3
Length = 1449
Score = 51.2 bits (121), Expect = 2e-06, Method: Composition-based stats.
Identities = 17/44 (38%), Positives = 25/44 (56%)
Query: 74 VKSSIICYNCNSSGHFARNCPNDSSKRCYACHQAGHMAKECPGQ 117
++ +I C+NC GH ARNC + C+ C Q GH K+C +
Sbjct: 388 IRKTIKCFNCGKEGHLARNCKAPRRRGCWKCGQEGHQMKDCKNE 431
Score = 44.7 bits (104), Expect = 2e-04, Method: Composition-based stats.
Identities = 13/45 (28%), Positives = 26/45 (57%)
Query: 55 ESVTCYNCSGQGHVAKDCTVKSSIICYNCNSSGHFARNCPNDSSK 99
+++ C+NC +GH+A++C C+ C GH ++C N+ +
Sbjct: 390 KTIKCFNCGKEGHLARNCKAPRRRGCWKCGQEGHQMKDCKNEGXQ 434
Score = 41.6 bits (96), Expect = 0.002, Method: Composition-based stats.
Identities = 17/43 (39%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Query: 31 RGDKVGIVCYKCNNYGHFAREC-ATESVTCYNCSGQGHVAKDC 72
+G + I C+ C GH AR C A C+ C +GH KDC
Sbjct: 386 KGIRKTIKCFNCGKEGHLARNCKAPRRRGCWKCGQEGHQMKDC 428
Score = 37.4 bits (85), Expect = 0.033, Method: Composition-based stats.
Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 11/48 (22%)
Query: 100 RCYACHQAGHMAKECPGQTAGKSPEPVVDMSLTCYVCGHQGHLSYDCK 147
+C+ C + GH+A+ C K+P C+ CG +GH DCK
Sbjct: 393 KCFNCGKEGHLARNC------KAPR-----RRGCWKCGQEGHQMKDCK 429
Score = 35.4 bits (80), Expect = 0.12, Method: Composition-based stats.
Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 9/50 (18%)
Query: 6 TIQCYNCFDFGHYQYSCPQKSSADARGDKVGIVCYKCNNYGHFARECATE 55
TI+C+NC GH +C + RG C+KC GH ++C E
Sbjct: 391 TIKCFNCGKEGHLARNC---KAPRRRG------CWKCGQEGHQMKDCKNE 431
>sp|Q1A268|GAG_SIVMB Gag polyprotein OS=Simian immunodeficiency virus (isolate MB66)
GN=gag PE=3 SV=3
Length = 499
Score = 51.2 bits (121), Expect = 2e-06, Method: Composition-based stats.
Identities = 23/69 (33%), Positives = 34/69 (49%), Gaps = 2/69 (2%)
Query: 57 VTCYNCSGQGHVAKDCTVKSSIICYNCNSSGHFARNCPNDSSKRCYACHQAGHMAKECPG 116
V C+NC +GH+A++C C+ C GH RNC N+ ++ + +K PG
Sbjct: 385 VKCFNCGKEGHIARNCKAPRRKGCWKCGQEGHQMRNCTNE--RQANFLGKLWPSSKGRPG 442
Query: 117 QTAGKSPEP 125
K PEP
Sbjct: 443 NFLQKRPEP 451
Score = 40.0 bits (92), Expect = 0.005, Method: Composition-based stats.
Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Query: 31 RGDKVGIVCYKCNNYGHFAREC-ATESVTCYNCSGQGHVAKDCT 73
+G K + C+ C GH AR C A C+ C +GH ++CT
Sbjct: 379 KGPKRIVKCFNCGKEGHIARNCKAPRRKGCWKCGQEGHQMRNCT 422
Score = 33.1 bits (74), Expect = 0.73, Method: Composition-based stats.
Identities = 14/47 (29%), Positives = 23/47 (48%), Gaps = 11/47 (23%)
Query: 100 RCYACHQAGHMAKECPGQTAGKSPEPVVDMSLTCYVCGHQGHLSYDC 146
+C+ C + GH+A+ C K+P C+ CG +GH +C
Sbjct: 386 KCFNCGKEGHIARNC------KAPR-----RKGCWKCGQEGHQMRNC 421
Score = 32.7 bits (73), Expect = 0.77, Method: Composition-based stats.
Identities = 15/51 (29%), Positives = 22/51 (43%), Gaps = 13/51 (25%)
Query: 7 IQCYNCFDFGHYQYSC--PQKSSADARGDKVGIVCYKCNNYGHFARECATE 55
++C+NC GH +C P++ C+KC GH R C E
Sbjct: 385 VKCFNCGKEGHIARNCKAPRRKG-----------CWKCGQEGHQMRNCTNE 424
>sp|Q74230|GAG_HV2EH Gag polyprotein OS=Human immunodeficiency virus type 2 subtype B
(isolate EHO) GN=gag PE=3 SV=3
Length = 519
Score = 51.2 bits (121), Expect = 2e-06, Method: Composition-based stats.
Identities = 18/46 (39%), Positives = 27/46 (58%)
Query: 75 KSSIICYNCNSSGHFARNCPNDSSKRCYACHQAGHMAKECPGQTAG 120
K ++ C+NC +GH AR C + C+ C Q GH+ +CP + AG
Sbjct: 384 KRTVTCWNCGKAGHTARQCKAPRRQGCWKCGQQGHIMSKCPERQAG 429
Score = 43.5 bits (101), Expect = 4e-04, Method: Composition-based stats.
Identities = 15/39 (38%), Positives = 19/39 (48%)
Query: 56 SVTCYNCSGQGHVAKDCTVKSSIICYNCNSSGHFARNCP 94
+VTC+NC GH A+ C C+ C GH CP
Sbjct: 386 TVTCWNCGKAGHTARQCKAPRRQGCWKCGQQGHIMSKCP 424
Score = 42.4 bits (98), Expect = 0.001, Method: Composition-based stats.
Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Query: 26 SSADARGDKVGIVCYKCNNYGHFAREC-ATESVTCYNCSGQGHVAKDC 72
++A R K + C+ C GH AR+C A C+ C QGH+ C
Sbjct: 376 AAAQPRAGKRTVTCWNCGKAGHTARQCKAPRRQGCWKCGQQGHIMSKC 423
Score = 35.4 bits (80), Expect = 0.13, Method: Composition-based stats.
Identities = 20/64 (31%), Positives = 29/64 (45%), Gaps = 13/64 (20%)
Query: 85 SSGHFARNCPNDSSKR--CYACHQAGHMAKECPGQTAGKSPEPVVDMSLTCYVCGHQGHL 142
S+ FA P + C+ C +AGH A++C K+P C+ CG QGH+
Sbjct: 371 STNPFAAAQPRAGKRTVTCWNCGKAGHTARQC------KAPR-----RQGCWKCGQQGHI 419
Query: 143 SYDC 146
C
Sbjct: 420 MSKC 423
Score = 30.4 bits (67), Expect = 4.4, Method: Composition-based stats.
Identities = 14/49 (28%), Positives = 20/49 (40%), Gaps = 13/49 (26%)
Query: 6 TIQCYNCFDFGHYQYSC--PQKSSADARGDKVGIVCYKCNNYGHFAREC 52
T+ C+NC GH C P++ C+KC GH +C
Sbjct: 386 TVTCWNCGKAGHTARQCKAPRRQG-----------CWKCGQQGHIMSKC 423
>sp|P05892|GAG_SIVVT Gag polyprotein OS=Simian immunodeficiency virus agm.vervet
(isolate AGM TYO-1) GN=gag PE=3 SV=1
Length = 519
Score = 51.2 bits (121), Expect = 2e-06, Method: Composition-based stats.
Identities = 18/38 (47%), Positives = 22/38 (57%)
Query: 80 CYNCNSSGHFARNCPNDSSKRCYACHQAGHMAKECPGQ 117
CYNC GH R CP +C C + GH+AK+C GQ
Sbjct: 399 CYNCGKFGHMQRQCPEPRKTKCLKCGKLGHLAKDCRGQ 436
Score = 43.1 bits (100), Expect = 7e-04, Method: Composition-based stats.
Identities = 17/46 (36%), Positives = 22/46 (47%), Gaps = 9/46 (19%)
Query: 7 IQCYNCFDFGHYQYSCPQKSSADARGDKVGIVCYKCNNYGHFAREC 52
++CYNC FGH Q CP+ C KC GH A++C
Sbjct: 397 LRCYNCGKFGHMQRQCPEPRKTK---------CLKCGKLGHLAKDC 433
Score = 40.8 bits (94), Expect = 0.003, Method: Composition-based stats.
Identities = 19/48 (39%), Positives = 24/48 (50%), Gaps = 11/48 (22%)
Query: 100 RCYACHQAGHMAKECPGQTAGKSPEPVVDMSLTCYVCGHQGHLSYDCK 147
RCY C + GHM ++C PEP C CG GHL+ DC+
Sbjct: 398 RCYNCGKFGHMQRQC--------PEP---RKTKCLKCGKLGHLAKDCR 434
>sp|Q77372|GAG_HV1AN Gag polyprotein OS=Human immunodeficiency virus type 1 group O
(isolate ANT70) GN=gag PE=3 SV=3
Length = 498
Score = 51.2 bits (121), Expect = 3e-06, Method: Composition-based stats.
Identities = 19/40 (47%), Positives = 23/40 (57%)
Query: 75 KSSIICYNCNSSGHFARNCPNDSSKRCYACHQAGHMAKEC 114
K +I C+NC GH ARNC K C+ C Q GH K+C
Sbjct: 391 KGTIKCFNCGKEGHIARNCRAPRKKGCWKCGQEGHQMKDC 430
Score = 43.5 bits (101), Expect = 5e-04, Method: Composition-based stats.
Identities = 13/40 (32%), Positives = 23/40 (57%)
Query: 56 SVTCYNCSGQGHVAKDCTVKSSIICYNCNSSGHFARNCPN 95
++ C+NC +GH+A++C C+ C GH ++C N
Sbjct: 393 TIKCFNCGKEGHIARNCRAPRKKGCWKCGQEGHQMKDCRN 432
Score = 33.5 bits (75), Expect = 0.52, Method: Composition-based stats.
Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 13/49 (26%)
Query: 6 TIQCYNCFDFGHYQYSC--PQKSSADARGDKVGIVCYKCNNYGHFAREC 52
TI+C+NC GH +C P+K C+KC GH ++C
Sbjct: 393 TIKCFNCGKEGHIARNCRAPRKKG-----------CWKCGQEGHQMKDC 430
>sp|Q9IDV8|GAG_HV1YB Gag polyprotein OS=Human immunodeficiency virus type 1 group N
(isolate YBF106) GN=gag PE=3 SV=3
Length = 511
Score = 50.4 bits (119), Expect = 4e-06, Method: Composition-based stats.
Identities = 17/44 (38%), Positives = 25/44 (56%)
Query: 74 VKSSIICYNCNSSGHFARNCPNDSSKRCYACHQAGHMAKECPGQ 117
++ +I C+NC GH ARNC + C+ C Q GH K+C +
Sbjct: 388 IRKTIKCFNCGKEGHLARNCKAPRRRGCWKCGQEGHQMKDCKNE 431
Score = 44.3 bits (103), Expect = 3e-04, Method: Composition-based stats.
Identities = 13/45 (28%), Positives = 26/45 (57%)
Query: 55 ESVTCYNCSGQGHVAKDCTVKSSIICYNCNSSGHFARNCPNDSSK 99
+++ C+NC +GH+A++C C+ C GH ++C N+ +
Sbjct: 390 KTIKCFNCGKEGHLARNCKAPRRRGCWKCGQEGHQMKDCKNEGXQ 434
Score = 40.8 bits (94), Expect = 0.003, Method: Composition-based stats.
Identities = 17/43 (39%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Query: 31 RGDKVGIVCYKCNNYGHFAREC-ATESVTCYNCSGQGHVAKDC 72
+G + I C+ C GH AR C A C+ C +GH KDC
Sbjct: 386 KGIRKTIKCFNCGKEGHLARNCKAPRRRGCWKCGQEGHQMKDC 428
Score = 36.6 bits (83), Expect = 0.056, Method: Composition-based stats.
Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 11/48 (22%)
Query: 100 RCYACHQAGHMAKECPGQTAGKSPEPVVDMSLTCYVCGHQGHLSYDCK 147
+C+ C + GH+A+ C K+P C+ CG +GH DCK
Sbjct: 393 KCFNCGKEGHLARNC------KAPR-----RRGCWKCGQEGHQMKDCK 429
Score = 35.0 bits (79), Expect = 0.19, Method: Composition-based stats.
Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 9/50 (18%)
Query: 6 TIQCYNCFDFGHYQYSCPQKSSADARGDKVGIVCYKCNNYGHFARECATE 55
TI+C+NC GH +C + RG C+KC GH ++C E
Sbjct: 391 TIKCFNCGKEGHLARNC---KAPRRRG------CWKCGQEGHQMKDCKNE 431
>sp|Q75002|POL_HV1ET Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype C (isolate ETH2220) GN=gag-pol PE=3 SV=3
Length = 1439
Score = 50.4 bits (119), Expect = 4e-06, Method: Composition-based stats.
Identities = 19/45 (42%), Positives = 25/45 (55%)
Query: 75 KSSIICYNCNSSGHFARNCPNDSSKRCYACHQAGHMAKECPGQTA 119
K +I C+NC GH ARNC K C+ C + GH K+C + A
Sbjct: 384 KRAIKCFNCGKEGHLARNCRAPRKKGCWKCGKEGHQMKDCTERQA 428
Score = 47.0 bits (110), Expect = 5e-05, Method: Composition-based stats.
Identities = 22/55 (40%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
Query: 24 QKSSADARGDKVGIVCYKCNNYGHFAREC-ATESVTCYNCSGQGHVAKDCTVKSS 77
QKS + +G K I C+ C GH AR C A C+ C +GH KDCT + +
Sbjct: 376 QKS--NFKGPKRAIKCFNCGKEGHLARNCRAPRKKGCWKCGKEGHQMKDCTERQA 428
Score = 44.3 bits (103), Expect = 3e-04, Method: Composition-based stats.
Identities = 22/71 (30%), Positives = 34/71 (47%), Gaps = 4/71 (5%)
Query: 56 SVTCYNCSGQGHVAKDCTVKSSIICYNCNSSGHFARNCPNDSSK--RCYACHQAGHMAKE 113
++ C+NC +GH+A++C C+ C GH ++C + R Q G A+E
Sbjct: 386 AIKCFNCGKEGHLARNCRAPRKKGCWKCGKEGHQMKDCTERQANFFRETLAFQQGK-ARE 444
Query: 114 CPG-QTAGKSP 123
P QT SP
Sbjct: 445 FPSEQTRANSP 455
Score = 34.3 bits (77), Expect = 0.31, Method: Composition-based stats.
Identities = 14/47 (29%), Positives = 23/47 (48%), Gaps = 11/47 (23%)
Query: 100 RCYACHQAGHMAKECPGQTAGKSPEPVVDMSLTCYVCGHQGHLSYDC 146
+C+ C + GH+A+ C ++P C+ CG +GH DC
Sbjct: 388 KCFNCGKEGHLARNC------RAPR-----KKGCWKCGKEGHQMKDC 423
Score = 32.0 bits (71), Expect = 1.3, Method: Composition-based stats.
Identities = 15/48 (31%), Positives = 22/48 (45%), Gaps = 13/48 (27%)
Query: 7 IQCYNCFDFGHYQYSC--PQKSSADARGDKVGIVCYKCNNYGHFAREC 52
I+C+NC GH +C P+K C+KC GH ++C
Sbjct: 387 IKCFNCGKEGHLARNCRAPRKKG-----------CWKCGKEGHQMKDC 423
>sp|Q75001|GAG_HV1ET Gag polyprotein OS=Human immunodeficiency virus type 1 group M
subtype C (isolate ETH2220) GN=gag PE=3 SV=3
Length = 504
Score = 50.4 bits (119), Expect = 4e-06, Method: Composition-based stats.
Identities = 19/45 (42%), Positives = 25/45 (55%)
Query: 75 KSSIICYNCNSSGHFARNCPNDSSKRCYACHQAGHMAKECPGQTA 119
K +I C+NC GH ARNC K C+ C + GH K+C + A
Sbjct: 384 KRAIKCFNCGKEGHLARNCRAPRKKGCWKCGKEGHQMKDCTERQA 428
Score = 47.0 bits (110), Expect = 5e-05, Method: Composition-based stats.
Identities = 22/55 (40%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
Query: 24 QKSSADARGDKVGIVCYKCNNYGHFAREC-ATESVTCYNCSGQGHVAKDCTVKSS 77
QKS + +G K I C+ C GH AR C A C+ C +GH KDCT + +
Sbjct: 376 QKS--NFKGPKRAIKCFNCGKEGHLARNCRAPRKKGCWKCGKEGHQMKDCTERQA 428
Score = 42.0 bits (97), Expect = 0.001, Method: Composition-based stats.
Identities = 18/70 (25%), Positives = 32/70 (45%), Gaps = 3/70 (4%)
Query: 56 SVTCYNCSGQGHVAKDCTVKSSIICYNCNSSGHFARNCPNDSSKRCYACHQAGHMAKECP 115
++ C+NC +GH+A++C C+ C GH ++C + ++ + K P
Sbjct: 386 AIKCFNCGKEGHLARNCRAPRKKGCWKCGKEGHQMKDC---TERQANFLGRLWPSNKGRP 442
Query: 116 GQTAGKSPEP 125
G PEP
Sbjct: 443 GNFLQSRPEP 452
Score = 34.3 bits (77), Expect = 0.31, Method: Composition-based stats.
Identities = 14/47 (29%), Positives = 23/47 (48%), Gaps = 11/47 (23%)
Query: 100 RCYACHQAGHMAKECPGQTAGKSPEPVVDMSLTCYVCGHQGHLSYDC 146
+C+ C + GH+A+ C ++P C+ CG +GH DC
Sbjct: 388 KCFNCGKEGHLARNC------RAPR-----KKGCWKCGKEGHQMKDC 423
Score = 32.0 bits (71), Expect = 1.3, Method: Composition-based stats.
Identities = 15/48 (31%), Positives = 22/48 (45%), Gaps = 13/48 (27%)
Query: 7 IQCYNCFDFGHYQYSC--PQKSSADARGDKVGIVCYKCNNYGHFAREC 52
I+C+NC GH +C P+K C+KC GH ++C
Sbjct: 387 IKCFNCGKEGHLARNCRAPRKKG-----------CWKCGKEGHQMKDC 423
>sp|P27972|GAG_SIVV1 Gag polyprotein OS=Simian immunodeficiency virus agm.vervet
(isolate AGM155) GN=gag PE=3 SV=1
Length = 520
Score = 50.1 bits (118), Expect = 5e-06, Method: Composition-based stats.
Identities = 18/38 (47%), Positives = 22/38 (57%)
Query: 80 CYNCNSSGHFARNCPNDSSKRCYACHQAGHMAKECPGQ 117
CYNC GH R CP +C C + GH+AK+C GQ
Sbjct: 400 CYNCGKFGHMQRQCPEPRKIKCLKCGKPGHLAKDCRGQ 437
Score = 42.4 bits (98), Expect = 0.001, Method: Composition-based stats.
Identities = 18/45 (40%), Positives = 22/45 (48%), Gaps = 9/45 (20%)
Query: 8 QCYNCFDFGHYQYSCPQKSSADARGDKVGIVCYKCNNYGHFAREC 52
+CYNC FGH Q CP+ I C KC GH A++C
Sbjct: 399 KCYNCGKFGHMQRQCPEPRK---------IKCLKCGKPGHLAKDC 434
Score = 42.4 bits (98), Expect = 0.001, Method: Composition-based stats.
Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Query: 39 CYKCNNYGHFARECAT-ESVTCYNCSGQGHVAKDCTVKSSIICY 81
CY C +GH R+C + C C GH+AKDC + + + Y
Sbjct: 400 CYNCGKFGHMQRQCPEPRKIKCLKCGKPGHLAKDCRGQVNFLGY 443
Score = 40.4 bits (93), Expect = 0.004, Method: Composition-based stats.
Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 11/48 (22%)
Query: 100 RCYACHQAGHMAKECPGQTAGKSPEPVVDMSLTCYVCGHQGHLSYDCK 147
+CY C + GHM ++C PEP + C CG GHL+ DC+
Sbjct: 399 KCYNCGKFGHMQRQC--------PEP---RKIKCLKCGKPGHLAKDCR 435
Score = 40.0 bits (92), Expect = 0.006, Method: Composition-based stats.
Identities = 14/35 (40%), Positives = 18/35 (51%)
Query: 59 CYNCSGQGHVAKDCTVKSSIICYNCNSSGHFARNC 93
CYNC GH+ + C I C C GH A++C
Sbjct: 400 CYNCGKFGHMQRQCPEPRKIKCLKCGKPGHLAKDC 434
>sp|P20876|POL_HV2ST Gag-Pol polyprotein OS=Human immunodeficiency virus type 2 subtype
A (isolate ST) GN=gag-pol PE=3 SV=3
Length = 1463
Score = 50.1 bits (118), Expect = 6e-06, Method: Composition-based stats.
Identities = 18/46 (39%), Positives = 27/46 (58%)
Query: 75 KSSIICYNCNSSGHFARNCPNDSSKRCYACHQAGHMAKECPGQTAG 120
+ +I C+NC GH AR C + C+ C +AGH+ +CP + AG
Sbjct: 386 RRTIKCWNCGKEGHSARQCRAPRRQGCWKCGKAGHIMAKCPERQAG 431
Score = 48.5 bits (114), Expect = 1e-05, Method: Composition-based stats.
Identities = 21/68 (30%), Positives = 31/68 (45%), Gaps = 4/68 (5%)
Query: 56 SVTCYNCSGQGHVAKDCTVKSSIICYNCNSSGHFARNCPNDSSKRCYACHQAGHMAKECP 115
++ C+NC +GH A+ C C+ C +GH CP +R + G M KE P
Sbjct: 388 TIKCWNCGKEGHSARQCRAPRRQGCWKCGKAGHIMAKCP----ERQAGFLRVGPMGKEAP 443
Query: 116 GQTAGKSP 123
G +P
Sbjct: 444 QFPCGPNP 451
Score = 31.6 bits (70), Expect = 1.7, Method: Composition-based stats.
Identities = 15/49 (30%), Positives = 21/49 (42%), Gaps = 13/49 (26%)
Query: 6 TIQCYNCFDFGHYQYSC--PQKSSADARGDKVGIVCYKCNNYGHFAREC 52
TI+C+NC GH C P++ C+KC GH +C
Sbjct: 388 TIKCWNCGKEGHSARQCRAPRRQG-----------CWKCGKAGHIMAKC 425
>sp|P20875|POL_HV1JR Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype B (isolate JRCSF) GN=gag-pol PE=1 SV=3
Length = 1439
Score = 49.7 bits (117), Expect = 6e-06, Method: Composition-based stats.
Identities = 18/45 (40%), Positives = 25/45 (55%)
Query: 75 KSSIICYNCNSSGHFARNCPNDSSKRCYACHQAGHMAKECPGQTA 119
+ ++ C+NC GH ARNC K C+ C + GH KEC + A
Sbjct: 387 RKNVKCFNCGKEGHIARNCRAPRKKGCWKCGKEGHQMKECTERQA 431
Score = 42.4 bits (98), Expect = 0.001, Method: Composition-based stats.
Identities = 13/39 (33%), Positives = 22/39 (56%)
Query: 55 ESVTCYNCSGQGHVAKDCTVKSSIICYNCNSSGHFARNC 93
++V C+NC +GH+A++C C+ C GH + C
Sbjct: 388 KNVKCFNCGKEGHIARNCRAPRKKGCWKCGKEGHQMKEC 426
Score = 42.0 bits (97), Expect = 0.001, Method: Composition-based stats.
Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Query: 31 RGDKVGIVCYKCNNYGHFAREC-ATESVTCYNCSGQGHVAKDCTVKSS 77
R + + C+ C GH AR C A C+ C +GH K+CT + +
Sbjct: 384 RNQRKNVKCFNCGKEGHIARNCRAPRKKGCWKCGKEGHQMKECTERQA 431
Score = 32.7 bits (73), Expect = 0.81, Method: Composition-based stats.
Identities = 15/48 (31%), Positives = 22/48 (45%), Gaps = 13/48 (27%)
Query: 7 IQCYNCFDFGHYQYSC--PQKSSADARGDKVGIVCYKCNNYGHFAREC 52
++C+NC GH +C P+K C+KC GH +EC
Sbjct: 390 VKCFNCGKEGHIARNCRAPRKKG-----------CWKCGKEGHQMKEC 426
Score = 32.0 bits (71), Expect = 1.4, Method: Composition-based stats.
Identities = 13/47 (27%), Positives = 23/47 (48%), Gaps = 11/47 (23%)
Query: 100 RCYACHQAGHMAKECPGQTAGKSPEPVVDMSLTCYVCGHQGHLSYDC 146
+C+ C + GH+A+ C ++P C+ CG +GH +C
Sbjct: 391 KCFNCGKEGHIARNC------RAPR-----KKGCWKCGKEGHQMKEC 426
>sp|P34689|GLH1_CAEEL ATP-dependent RNA helicase glh-1 OS=Caenorhabditis elegans GN=glh-1
PE=1 SV=3
Length = 763
Score = 49.7 bits (117), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 34/131 (25%), Positives = 48/131 (36%), Gaps = 45/131 (34%)
Query: 9 CYNCFDFGHYQYSCPQKSSADARGDKVGIVCYKCNNYGHFARECATES------------ 56
C+NC GH CP+ R ++ VCY C GH +REC E
Sbjct: 160 CFNCQQPGHRSSDCPE-----PRKEREPRVCYNCQQPGHTSRECTEERKPREGRTGGFGG 214
Query: 57 ---------------------------VTCYNCSGQGHVAKDCTVKSSIICYNCNSSGHF 89
+ C+NC G+GH + +C + C+NC GH
Sbjct: 215 GAGFGNNGGNDGFGGDGGFGGGEERGPMKCFNCKGEGHRSAECP-EPPRGCFNCGEQGHR 273
Query: 90 ARNCPNDSSKR 100
+ CPN + R
Sbjct: 274 SNECPNPAKPR 284
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/120 (23%), Positives = 43/120 (35%), Gaps = 44/120 (36%)
Query: 39 CYKCNNYGHFARECAT-----ESVTCYNCSGQGHVAKDCT-------------------- 73
C+ C GH + +C E CYNC GH +++CT
Sbjct: 160 CFNCQQPGHRSSDCPEPRKEREPRVCYNCQQPGHTSRECTEERKPREGRTGGFGGGAGFG 219
Query: 74 ------------------VKSSIICYNCNSSGHFARNCPNDSSKRCYACHQAGHMAKECP 115
+ + C+NC GH + CP + + C+ C + GH + ECP
Sbjct: 220 NNGGNDGFGGDGGFGGGEERGPMKCFNCKGEGHRSAECP-EPPRGCFNCGEQGHRSNECP 278
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 24/51 (47%), Gaps = 7/51 (13%)
Query: 101 CYACHQAGHMAKECPGQTAGKSPEPVVDMSLTCYVCGHQGHLSYDCKLVQK 151
C+ C Q GH + +CP K EP V CY C GH S +C +K
Sbjct: 160 CFNCQQPGHRSSDCP--EPRKEREPRV-----CYNCQQPGHTSRECTEERK 203
Score = 30.0 bits (66), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 30/72 (41%), Gaps = 10/72 (13%)
Query: 7 IQCYNCFDFGHYQYSCPQKSSADARGDKVGIVCYKCNNYGHFARECATESVTCYNCSGQG 66
++C+NC GH CP+ RG C+ C GH + EC + G+G
Sbjct: 242 MKCFNCKGEGHRSAECPEPP----RG------CFNCGEQGHRSNECPNPAKPREGVEGEG 291
Query: 67 HVAKDCTVKSSI 78
A V+ ++
Sbjct: 292 PKATYVPVEDNM 303
>sp|P20873|GAG_HV1JR Gag polyprotein OS=Human immunodeficiency virus type 1 group M
subtype B (isolate JRCSF) GN=gag PE=3 SV=3
Length = 504
Score = 49.7 bits (117), Expect = 6e-06, Method: Composition-based stats.
Identities = 18/45 (40%), Positives = 25/45 (55%)
Query: 75 KSSIICYNCNSSGHFARNCPNDSSKRCYACHQAGHMAKECPGQTA 119
+ ++ C+NC GH ARNC K C+ C + GH KEC + A
Sbjct: 387 RKNVKCFNCGKEGHIARNCRAPRKKGCWKCGKEGHQMKECTERQA 431
Score = 42.7 bits (99), Expect = 0.001, Method: Composition-based stats.
Identities = 19/71 (26%), Positives = 32/71 (45%), Gaps = 3/71 (4%)
Query: 55 ESVTCYNCSGQGHVAKDCTVKSSIICYNCNSSGHFARNCPNDSSKRCYACHQAGHMAKEC 114
++V C+NC +GH+A++C C+ C GH + C + ++ + K
Sbjct: 388 KNVKCFNCGKEGHIARNCRAPRKKGCWKCGKEGHQMKEC---TERQANFLGKIWPSYKGR 444
Query: 115 PGQTAGKSPEP 125
PG PEP
Sbjct: 445 PGNFLQSRPEP 455
Score = 42.0 bits (97), Expect = 0.001, Method: Composition-based stats.
Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Query: 31 RGDKVGIVCYKCNNYGHFAREC-ATESVTCYNCSGQGHVAKDCTVKSS 77
R + + C+ C GH AR C A C+ C +GH K+CT + +
Sbjct: 384 RNQRKNVKCFNCGKEGHIARNCRAPRKKGCWKCGKEGHQMKECTERQA 431
Score = 32.7 bits (73), Expect = 0.87, Method: Composition-based stats.
Identities = 15/48 (31%), Positives = 22/48 (45%), Gaps = 13/48 (27%)
Query: 7 IQCYNCFDFGHYQYSC--PQKSSADARGDKVGIVCYKCNNYGHFAREC 52
++C+NC GH +C P+K C+KC GH +EC
Sbjct: 390 VKCFNCGKEGHIARNCRAPRKKG-----------CWKCGKEGHQMKEC 426
Score = 32.0 bits (71), Expect = 1.5, Method: Composition-based stats.
Identities = 13/47 (27%), Positives = 23/47 (48%), Gaps = 11/47 (23%)
Query: 100 RCYACHQAGHMAKECPGQTAGKSPEPVVDMSLTCYVCGHQGHLSYDC 146
+C+ C + GH+A+ C ++P C+ CG +GH +C
Sbjct: 391 KCFNCGKEGHIARNC------RAPR-----KKGCWKCGKEGHQMKEC 426
>sp|P12451|POL_HV2SB Gag-Pol polyprotein OS=Human immunodeficiency virus type 2 subtype
A (isolate SBLISY) GN=gag-pol PE=3 SV=3
Length = 1462
Score = 49.7 bits (117), Expect = 7e-06, Method: Composition-based stats.
Identities = 23/68 (33%), Positives = 31/68 (45%), Gaps = 4/68 (5%)
Query: 48 FARECATESVTCYNCSGQGHVAKDCTVKSSIICYNCNSSGHFARNCPNDSSKRCYACHQA 107
FA ++ C+NC +GH A+ C C+ C SGH NCP+ R +A
Sbjct: 379 FAAAQQKRAIKCWNCGKEGHSARQCRAPRRQGCWKCGKSGHIMANCPD----RQAGFLRA 434
Query: 108 GHMAKECP 115
M KE P
Sbjct: 435 WTMGKEAP 442
Score = 49.7 bits (117), Expect = 7e-06, Method: Composition-based stats.
Identities = 18/46 (39%), Positives = 26/46 (56%)
Query: 75 KSSIICYNCNSSGHFARNCPNDSSKRCYACHQAGHMAKECPGQTAG 120
K +I C+NC GH AR C + C+ C ++GH+ CP + AG
Sbjct: 385 KRAIKCWNCGKEGHSARQCRAPRRQGCWKCGKSGHIMANCPDRQAG 430
Score = 38.1 bits (87), Expect = 0.021, Method: Composition-based stats.
Identities = 16/44 (36%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Query: 30 ARGDKVGIVCYKCNNYGHFAREC-ATESVTCYNCSGQGHVAKDC 72
A K I C+ C GH AR+C A C+ C GH+ +C
Sbjct: 381 AAQQKRAIKCWNCGKEGHSARQCRAPRRQGCWKCGKSGHIMANC 424
Score = 32.0 bits (71), Expect = 1.4, Method: Composition-based stats.
Identities = 13/47 (27%), Positives = 23/47 (48%), Gaps = 11/47 (23%)
Query: 100 RCYACHQAGHMAKECPGQTAGKSPEPVVDMSLTCYVCGHQGHLSYDC 146
+C+ C + GH A++C ++P C+ CG GH+ +C
Sbjct: 389 KCWNCGKEGHSARQC------RAPR-----RQGCWKCGKSGHIMANC 424
>sp|O41798|POL_HV19N Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype G (isolate 92NG083) GN=gag-pol PE=3 SV=3
Length = 1435
Score = 49.7 bits (117), Expect = 7e-06, Method: Composition-based stats.
Identities = 19/42 (45%), Positives = 23/42 (54%)
Query: 78 IICYNCNSSGHFARNCPNDSSKRCYACHQAGHMAKECPGQTA 119
I C+NC GH ARNC K C+ C + GH KEC + A
Sbjct: 391 IKCFNCGKEGHLARNCRAPRKKGCWKCGKEGHQMKECTERQA 432
Score = 45.1 bits (105), Expect = 2e-04, Method: Composition-based stats.
Identities = 20/69 (28%), Positives = 29/69 (42%), Gaps = 2/69 (2%)
Query: 57 VTCYNCSGQGHVAKDCTVKSSIICYNCNSSGHFARNCPNDSSK--RCYACHQAGHMAKEC 114
+ C+NC +GH+A++C C+ C GH + C + R Q G K
Sbjct: 391 IKCFNCGKEGHLARNCRAPRKKGCWKCGKEGHQMKECTERQANFLRENLAFQQGEARKLS 450
Query: 115 PGQTAGKSP 123
P Q SP
Sbjct: 451 PEQDRANSP 459
Score = 42.0 bits (97), Expect = 0.001, Method: Composition-based stats.
Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Query: 28 ADARGDKVGIVCYKCNNYGHFAREC-ATESVTCYNCSGQGHVAKDCTVKSS 77
++ +G + I C+ C GH AR C A C+ C +GH K+CT + +
Sbjct: 382 SNFKGPRRIIKCFNCGKEGHLARNCRAPRKKGCWKCGKEGHQMKECTERQA 432
Score = 33.5 bits (75), Expect = 0.49, Method: Composition-based stats.
Identities = 16/48 (33%), Positives = 22/48 (45%), Gaps = 13/48 (27%)
Query: 7 IQCYNCFDFGHYQYSC--PQKSSADARGDKVGIVCYKCNNYGHFAREC 52
I+C+NC GH +C P+K C+KC GH +EC
Sbjct: 391 IKCFNCGKEGHLARNCRAPRKKG-----------CWKCGKEGHQMKEC 427
Score = 32.3 bits (72), Expect = 1.1, Method: Composition-based stats.
Identities = 13/47 (27%), Positives = 23/47 (48%), Gaps = 11/47 (23%)
Query: 100 RCYACHQAGHMAKECPGQTAGKSPEPVVDMSLTCYVCGHQGHLSYDC 146
+C+ C + GH+A+ C ++P C+ CG +GH +C
Sbjct: 392 KCFNCGKEGHLARNC------RAPR-----KKGCWKCGKEGHQMKEC 427
>sp|P0C1K7|GAG_HV19N Gag polyprotein OS=Human immunodeficiency virus type 1 group M
subtype G (isolate 92NG083) GN=gag PE=3 SV=2
Length = 497
Score = 49.7 bits (117), Expect = 7e-06, Method: Composition-based stats.
Identities = 19/42 (45%), Positives = 23/42 (54%)
Query: 78 IICYNCNSSGHFARNCPNDSSKRCYACHQAGHMAKECPGQTA 119
I C+NC GH ARNC K C+ C + GH KEC + A
Sbjct: 391 IKCFNCGKEGHLARNCRAPRKKGCWKCGKEGHQMKECTERQA 432
Score = 42.4 bits (98), Expect = 0.001, Method: Composition-based stats.
Identities = 22/71 (30%), Positives = 34/71 (47%), Gaps = 6/71 (8%)
Query: 28 ADARGDKVGIVCYKCNNYGHFAREC-ATESVTCYNCSGQGHVAKDCTVKSS-----IICY 81
++ +G + I C+ C GH AR C A C+ C +GH K+CT + + I
Sbjct: 382 SNFKGPRRIIKCFNCGKEGHLARNCRAPRKKGCWKCGKEGHQMKECTERQANFLGKIWPS 441
Query: 82 NCNSSGHFARN 92
N G+F +N
Sbjct: 442 NKGRPGNFLQN 452
Score = 40.4 bits (93), Expect = 0.004, Method: Composition-based stats.
Identities = 12/37 (32%), Positives = 20/37 (54%)
Query: 57 VTCYNCSGQGHVAKDCTVKSSIICYNCNSSGHFARNC 93
+ C+NC +GH+A++C C+ C GH + C
Sbjct: 391 IKCFNCGKEGHLARNCRAPRKKGCWKCGKEGHQMKEC 427
Score = 33.5 bits (75), Expect = 0.49, Method: Composition-based stats.
Identities = 16/48 (33%), Positives = 22/48 (45%), Gaps = 13/48 (27%)
Query: 7 IQCYNCFDFGHYQYSC--PQKSSADARGDKVGIVCYKCNNYGHFAREC 52
I+C+NC GH +C P+K C+KC GH +EC
Sbjct: 391 IKCFNCGKEGHLARNCRAPRKKG-----------CWKCGKEGHQMKEC 427
Score = 32.3 bits (72), Expect = 1.1, Method: Composition-based stats.
Identities = 13/47 (27%), Positives = 23/47 (48%), Gaps = 11/47 (23%)
Query: 100 RCYACHQAGHMAKECPGQTAGKSPEPVVDMSLTCYVCGHQGHLSYDC 146
+C+ C + GH+A+ C ++P C+ CG +GH +C
Sbjct: 392 KCFNCGKEGHLARNC------RAPR-----KKGCWKCGKEGHQMKEC 427
>sp|P15833|POL_HV2D2 Gag-Pol polyprotein OS=Human immunodeficiency virus type 2 subtype
B (isolate D205) GN=gag-pol PE=3 SV=3
Length = 1465
Score = 49.7 bits (117), Expect = 7e-06, Method: Composition-based stats.
Identities = 22/68 (32%), Positives = 30/68 (44%), Gaps = 9/68 (13%)
Query: 56 SVTCYNCSGQGHVAKDCTVKSSIICYNCNSSGHFARNCPNDSSKRCYACHQAGHMAKECP 115
+VTC+NC QGH A+ C C+ C +GH CP QAG +
Sbjct: 387 TVTCWNCGKQGHTARQCRAPRRQGCWKCGKTGHIMSKCPE---------RQAGFLRVRTL 437
Query: 116 GQTAGKSP 123
G+ A + P
Sbjct: 438 GKEASQLP 445
Score = 48.9 bits (115), Expect = 1e-05, Method: Composition-based stats.
Identities = 16/46 (34%), Positives = 26/46 (56%)
Query: 75 KSSIICYNCNSSGHFARNCPNDSSKRCYACHQAGHMAKECPGQTAG 120
+ ++ C+NC GH AR C + C+ C + GH+ +CP + AG
Sbjct: 385 RGTVTCWNCGKQGHTARQCRAPRRQGCWKCGKTGHIMSKCPERQAG 430
Score = 38.1 bits (87), Expect = 0.018, Method: Composition-based stats.
Identities = 19/68 (27%), Positives = 29/68 (42%), Gaps = 2/68 (2%)
Query: 32 GDKVGIVCYKCNNYGHFAREC-ATESVTCYNCSGQGHVAKDCTVKSSIICYNCNSSGHFA 90
G + + C+ C GH AR+C A C+ C GH+ C + + + G A
Sbjct: 383 GKRGTVTCWNCGKQGHTARQCRAPRRQGCWKCGKTGHIMSKCPERQAGF-LRVRTLGKEA 441
Query: 91 RNCPNDSS 98
P+D S
Sbjct: 442 SQLPHDPS 449
Score = 30.8 bits (68), Expect = 3.6, Method: Composition-based stats.
Identities = 14/49 (28%), Positives = 20/49 (40%), Gaps = 13/49 (26%)
Query: 6 TIQCYNCFDFGHYQYSC--PQKSSADARGDKVGIVCYKCNNYGHFAREC 52
T+ C+NC GH C P++ C+KC GH +C
Sbjct: 387 TVTCWNCGKQGHTARQCRAPRRQG-----------CWKCGKTGHIMSKC 424
>sp|O89940|POL_HV1SE Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype G (isolate SE6165) GN=gag-pol PE=3 SV=3
Length = 1433
Score = 49.3 bits (116), Expect = 8e-06, Method: Composition-based stats.
Identities = 18/45 (40%), Positives = 25/45 (55%)
Query: 75 KSSIICYNCNSSGHFARNCPNDSSKRCYACHQAGHMAKECPGQTA 119
+ +I C+NC GH ARNC K C+ C + GH K+C + A
Sbjct: 388 RRTIKCFNCGKEGHLARNCRAPRKKGCWKCGKEGHQMKDCTERQA 432
Score = 44.7 bits (104), Expect = 2e-04, Method: Composition-based stats.
Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Query: 28 ADARGDKVGIVCYKCNNYGHFAREC-ATESVTCYNCSGQGHVAKDCTVKSS 77
++ +G + I C+ C GH AR C A C+ C +GH KDCT + +
Sbjct: 382 SNFKGPRRTIKCFNCGKEGHLARNCRAPRKKGCWKCGKEGHQMKDCTERQA 432
Score = 42.0 bits (97), Expect = 0.002, Method: Composition-based stats.
Identities = 12/38 (31%), Positives = 22/38 (57%)
Query: 56 SVTCYNCSGQGHVAKDCTVKSSIICYNCNSSGHFARNC 93
++ C+NC +GH+A++C C+ C GH ++C
Sbjct: 390 TIKCFNCGKEGHLARNCRAPRKKGCWKCGKEGHQMKDC 427
Score = 34.3 bits (77), Expect = 0.31, Method: Composition-based stats.
Identities = 14/47 (29%), Positives = 23/47 (48%), Gaps = 11/47 (23%)
Query: 100 RCYACHQAGHMAKECPGQTAGKSPEPVVDMSLTCYVCGHQGHLSYDC 146
+C+ C + GH+A+ C ++P C+ CG +GH DC
Sbjct: 392 KCFNCGKEGHLARNC------RAPR-----KKGCWKCGKEGHQMKDC 427
Score = 33.9 bits (76), Expect = 0.35, Method: Composition-based stats.
Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 13/49 (26%)
Query: 6 TIQCYNCFDFGHYQYSC--PQKSSADARGDKVGIVCYKCNNYGHFAREC 52
TI+C+NC GH +C P+K C+KC GH ++C
Sbjct: 390 TIKCFNCGKEGHLARNCRAPRKKG-----------CWKCGKEGHQMKDC 427
>sp|P20874|GAG_HV2ST Gag polyprotein OS=Human immunodeficiency virus type 2 subtype A
(isolate ST) GN=gag PE=3 SV=3
Length = 521
Score = 49.3 bits (116), Expect = 9e-06, Method: Composition-based stats.
Identities = 18/46 (39%), Positives = 27/46 (58%)
Query: 75 KSSIICYNCNSSGHFARNCPNDSSKRCYACHQAGHMAKECPGQTAG 120
+ +I C+NC GH AR C + C+ C +AGH+ +CP + AG
Sbjct: 386 RRTIKCWNCGKEGHSARQCRAPRRQGCWKCGKAGHIMAKCPERQAG 431
Score = 41.6 bits (96), Expect = 0.002, Method: Composition-based stats.
Identities = 13/39 (33%), Positives = 20/39 (51%)
Query: 56 SVTCYNCSGQGHVAKDCTVKSSIICYNCNSSGHFARNCP 94
++ C+NC +GH A+ C C+ C +GH CP
Sbjct: 388 TIKCWNCGKEGHSARQCRAPRRQGCWKCGKAGHIMAKCP 426
Score = 35.4 bits (80), Expect = 0.15, Method: Composition-based stats.
Identities = 14/37 (37%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Query: 37 IVCYKCNNYGHFAREC-ATESVTCYNCSGQGHVAKDC 72
I C+ C GH AR+C A C+ C GH+ C
Sbjct: 389 IKCWNCGKEGHSARQCRAPRRQGCWKCGKAGHIMAKC 425
Score = 31.2 bits (69), Expect = 2.8, Method: Composition-based stats.
Identities = 15/49 (30%), Positives = 21/49 (42%), Gaps = 13/49 (26%)
Query: 6 TIQCYNCFDFGHYQYSC--PQKSSADARGDKVGIVCYKCNNYGHFAREC 52
TI+C+NC GH C P++ C+KC GH +C
Sbjct: 388 TIKCWNCGKEGHSARQCRAPRRQG-----------CWKCGKAGHIMAKC 425
>sp|O89939|GAG_HV1SE Gag polyprotein OS=Human immunodeficiency virus type 1 group M
subtype G (isolate SE6165) GN=gag PE=3 SV=3
Length = 495
Score = 48.9 bits (115), Expect = 1e-05, Method: Composition-based stats.
Identities = 18/45 (40%), Positives = 25/45 (55%)
Query: 75 KSSIICYNCNSSGHFARNCPNDSSKRCYACHQAGHMAKECPGQTA 119
+ +I C+NC GH ARNC K C+ C + GH K+C + A
Sbjct: 388 RRTIKCFNCGKEGHLARNCRAPRKKGCWKCGKEGHQMKDCTERQA 432
Score = 44.3 bits (103), Expect = 3e-04, Method: Composition-based stats.
Identities = 23/71 (32%), Positives = 34/71 (47%), Gaps = 6/71 (8%)
Query: 28 ADARGDKVGIVCYKCNNYGHFAREC-ATESVTCYNCSGQGHVAKDCTVKSS-----IICY 81
++ +G + I C+ C GH AR C A C+ C +GH KDCT + + I
Sbjct: 382 SNFKGPRRTIKCFNCGKEGHLARNCRAPRKKGCWKCGKEGHQMKDCTERQANFLGKIWPS 441
Query: 82 NCNSSGHFARN 92
N G+F +N
Sbjct: 442 NKGRPGNFLQN 452
Score = 41.6 bits (96), Expect = 0.002, Method: Composition-based stats.
Identities = 12/38 (31%), Positives = 22/38 (57%)
Query: 56 SVTCYNCSGQGHVAKDCTVKSSIICYNCNSSGHFARNC 93
++ C+NC +GH+A++C C+ C GH ++C
Sbjct: 390 TIKCFNCGKEGHLARNCRAPRKKGCWKCGKEGHQMKDC 427
Score = 33.9 bits (76), Expect = 0.41, Method: Composition-based stats.
Identities = 14/47 (29%), Positives = 23/47 (48%), Gaps = 11/47 (23%)
Query: 100 RCYACHQAGHMAKECPGQTAGKSPEPVVDMSLTCYVCGHQGHLSYDC 146
+C+ C + GH+A+ C ++P C+ CG +GH DC
Sbjct: 392 KCFNCGKEGHLARNC------RAPR-----KKGCWKCGKEGHQMKDC 427
Score = 33.5 bits (75), Expect = 0.46, Method: Composition-based stats.
Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 13/49 (26%)
Query: 6 TIQCYNCFDFGHYQYSC--PQKSSADARGDKVGIVCYKCNNYGHFAREC 52
TI+C+NC GH +C P+K C+KC GH ++C
Sbjct: 390 TIKCFNCGKEGHLARNCRAPRKKG-----------CWKCGKEGHQMKDC 427
>sp|O91080|POL_HV1YF Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group N
(isolate YBF30) GN=gag-pol PE=3 SV=3
Length = 1449
Score = 48.9 bits (115), Expect = 1e-05, Method: Composition-based stats.
Identities = 17/44 (38%), Positives = 23/44 (52%)
Query: 74 VKSSIICYNCNSSGHFARNCPNDSSKRCYACHQAGHMAKECPGQ 117
++ I C+NC GH ARNC C+ C Q GH K+C +
Sbjct: 389 IRKPIKCFNCGKEGHLARNCKAPRRGGCWKCGQEGHQMKDCKNE 432
Score = 43.5 bits (101), Expect = 5e-04, Method: Composition-based stats.
Identities = 13/43 (30%), Positives = 24/43 (55%)
Query: 57 VTCYNCSGQGHVAKDCTVKSSIICYNCNSSGHFARNCPNDSSK 99
+ C+NC +GH+A++C C+ C GH ++C N+ +
Sbjct: 393 IKCFNCGKEGHLARNCKAPRRGGCWKCGQEGHQMKDCKNEGRQ 435
Score = 41.6 bits (96), Expect = 0.002, Method: Composition-based stats.
Identities = 22/59 (37%), Positives = 26/59 (44%), Gaps = 5/59 (8%)
Query: 19 QYSCPQKSSADARGDKVGI----VCYKCNNYGHFAREC-ATESVTCYNCSGQGHVAKDC 72
Q P S RG+ GI C+ C GH AR C A C+ C +GH KDC
Sbjct: 371 QVQQPTTSVFAQRGNFKGIRKPIKCFNCGKEGHLARNCKAPRRGGCWKCGQEGHQMKDC 429
Score = 37.7 bits (86), Expect = 0.024, Method: Composition-based stats.
Identities = 15/48 (31%), Positives = 22/48 (45%), Gaps = 11/48 (22%)
Query: 100 RCYACHQAGHMAKECPGQTAGKSPEPVVDMSLTCYVCGHQGHLSYDCK 147
+C+ C + GH+A+ C G C+ CG +GH DCK
Sbjct: 394 KCFNCGKEGHLARNCKAPRRGG-----------CWKCGQEGHQMKDCK 430
Score = 34.7 bits (78), Expect = 0.22, Method: Composition-based stats.
Identities = 17/49 (34%), Positives = 23/49 (46%), Gaps = 9/49 (18%)
Query: 7 IQCYNCFDFGHYQYSCPQKSSADARGDKVGIVCYKCNNYGHFARECATE 55
I+C+NC GH +C A RG C+KC GH ++C E
Sbjct: 393 IKCFNCGKEGHLARNC----KAPRRGG-----CWKCGQEGHQMKDCKNE 432
>sp|P12450|GAG_HV2SB Gag polyprotein OS=Human immunodeficiency virus type 2 subtype A
(isolate SBLISY) GN=gag PE=3 SV=3
Length = 520
Score = 48.9 bits (115), Expect = 1e-05, Method: Composition-based stats.
Identities = 18/46 (39%), Positives = 26/46 (56%)
Query: 75 KSSIICYNCNSSGHFARNCPNDSSKRCYACHQAGHMAKECPGQTAG 120
K +I C+NC GH AR C + C+ C ++GH+ CP + AG
Sbjct: 385 KRAIKCWNCGKEGHSARQCRAPRRQGCWKCGKSGHIMANCPDRQAG 430
Score = 47.0 bits (110), Expect = 4e-05, Method: Composition-based stats.
Identities = 17/48 (35%), Positives = 24/48 (50%)
Query: 48 FARECATESVTCYNCSGQGHVAKDCTVKSSIICYNCNSSGHFARNCPN 95
FA ++ C+NC +GH A+ C C+ C SGH NCP+
Sbjct: 379 FAAAQQKRAIKCWNCGKEGHSARQCRAPRRQGCWKCGKSGHIMANCPD 426
Score = 37.4 bits (85), Expect = 0.032, Method: Composition-based stats.
Identities = 16/44 (36%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Query: 30 ARGDKVGIVCYKCNNYGHFAREC-ATESVTCYNCSGQGHVAKDC 72
A K I C+ C GH AR+C A C+ C GH+ +C
Sbjct: 381 AAQQKRAIKCWNCGKEGHSARQCRAPRRQGCWKCGKSGHIMANC 424
Score = 31.2 bits (69), Expect = 2.2, Method: Composition-based stats.
Identities = 13/47 (27%), Positives = 23/47 (48%), Gaps = 11/47 (23%)
Query: 100 RCYACHQAGHMAKECPGQTAGKSPEPVVDMSLTCYVCGHQGHLSYDC 146
+C+ C + GH A++C ++P C+ CG GH+ +C
Sbjct: 389 KCWNCGKEGHSARQC------RAPR-----RQGCWKCGKSGHIMANC 424
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.132 0.448
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 57,588,933
Number of Sequences: 539616
Number of extensions: 2177138
Number of successful extensions: 8638
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 267
Number of HSP's successfully gapped in prelim test: 281
Number of HSP's that attempted gapping in prelim test: 5366
Number of HSP's gapped (non-prelim): 2292
length of query: 152
length of database: 191,569,459
effective HSP length: 107
effective length of query: 45
effective length of database: 133,830,547
effective search space: 6022374615
effective search space used: 6022374615
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (26.2 bits)