Your job contains 1 sequence.
>psy16574
MSSTSTIQCYNCFDFGHYQYSCPQKSSADARGDKVGIVCYKCNNYGHFARECATESVTCY
NCSGQGHVAKDCTVKSSIICYNCNSSGHFARNCPNDSSKRCYACHQAGHMAKECPGQTAG
KSPEPVVDMSLTCYVCGHQGHLSYDCKLVQKS
The BLAST search returned 22 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy16574
(152 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
FB|FBgn0034802 - symbol:CG3800 species:7227 "Drosophila m... 294 5.2e-26 1
ZFIN|ZDB-GENE-030131-5045 - symbol:cnbpa "CCHC-type zinc ... 290 1.4e-25 1
UNIPROTKB|B4DP17 - symbol:CNBP "cDNA FLJ61146, highly sim... 288 2.2e-25 1
ZFIN|ZDB-GENE-030131-7782 - symbol:cnbpb "CCHC-type zinc ... 279 2.0e-24 1
UNIPROTKB|G3MZ41 - symbol:ZCCHC13 "Uncharacterized protei... 273 8.7e-24 1
UNIPROTKB|Q3T0Q6 - symbol:CNBP "Cellular nucleic acid-bin... 273 8.7e-24 1
UNIPROTKB|F1N8C2 - symbol:CNBP "Cellular nucleic acid-bin... 272 1.1e-23 1
UNIPROTKB|P62633 - symbol:CNBP "Cellular nucleic acid-bin... 259 2.6e-22 1
UNIPROTKB|Q4R501 - symbol:Q4R501 "Brain cDNA, clone: QnpA... 259 2.6e-22 1
UNIPROTKB|Q5R5R5 - symbol:CNBP "Cellular nucleic acid-bin... 259 2.6e-22 1
RGD|621807 - symbol:Cnbp "CCHC-type zinc finger, nucleic ... 259 2.6e-22 1
UNIPROTKB|P62634 - symbol:Cnbp "Cellular nucleic acid-bin... 259 2.6e-22 1
MGI|MGI:88431 - symbol:Cnbp "cellular nucleic acid bindin... 255 7.0e-22 1
UNIPROTKB|O42395 - symbol:CNBP "Cellular nucleic acid-bin... 255 7.0e-22 1
UNIPROTKB|E2RPD7 - symbol:CNBP "Uncharacterized protein" ... 252 1.5e-21 1
UNIPROTKB|F8WFK2 - symbol:Cnbp "Cellular nucleic acid-bin... 252 1.5e-21 1
DICTYBASE|DDB_G0293328 - symbol:DDB_G0293328 "Cellular nu... 251 1.9e-21 1
ASPGD|ASPL0000028407 - symbol:AN5111 species:162425 "Emer... 249 3.0e-21 1
CGD|CAL0002417 - symbol:GIS2 species:5476 "Candida albica... 245 8.0e-21 1
UNIPROTKB|Q59YJ9 - symbol:GIS2 "Putative uncharacterized ... 245 8.0e-21 1
UNIPROTKB|J9NRQ2 - symbol:ZCCHC13 "Uncharacterized protei... 245 8.0e-21 1
TAIR|locus:2135139 - symbol:CSDP1 "cold shock domain prot... 244 1.0e-20 1
POMBASE|SPAC13D6.02c - symbol:byr3 "zinc finger protein B... 243 1.3e-20 1
SGD|S000005199 - symbol:GIS2 "Translational activator for... 239 3.5e-20 1
UNIPROTKB|F1NI84 - symbol:CNBP "Cellular nucleic acid-bin... 237 5.7e-20 1
TAIR|locus:2005719 - symbol:AT1G75560 species:3702 "Arabi... 232 1.9e-19 1
ASPGD|ASPL0000040986 - symbol:AN9093 species:162425 "Emer... 224 1.4e-18 1
WB|WBGene00019537 - symbol:K08D12.3 species:6239 "Caenorh... 217 7.5e-18 1
UNIPROTKB|Q8WW36 - symbol:ZCCHC13 "Zinc finger CCHC domai... 216 9.5e-18 1
UNIPROTKB|G4MRA3 - symbol:MGG_13778 "Zinc finger protein ... 213 2.0e-17 1
UNIPROTKB|G4N4A8 - symbol:MGG_05948 "Zinc knuckle domain-... 204 1.8e-16 1
TAIR|locus:2827810 - symbol:CSP3 "cold shock domain prote... 199 6.0e-16 1
TAIR|locus:2078526 - symbol:AT3G42860 species:3702 "Arabi... 191 1.4e-14 1
UNIPROTKB|Q65XV7 - symbol:P0016H04.11 "Os05g0111000 prote... 198 1.6e-14 1
TAIR|locus:2156647 - symbol:AT5G52380 species:3702 "Arabi... 178 1.0e-13 1
TAIR|locus:2079859 - symbol:AT3G43590 species:3702 "Arabi... 179 7.3e-13 1
WB|WBGene00001601 - symbol:glh-4 species:6239 "Caenorhabd... 182 1.0e-12 1
ZFIN|ZDB-GENE-030102-2 - symbol:zcchc7 "zinc finger, CCHC... 175 2.5e-12 1
SGD|S000001341 - symbol:AIR1 "Zinc knuckle protein" speci... 160 3.5e-11 1
POMBASE|SPBP35G2.08c - symbol:air1 "zinc knuckle TRAMP co... 154 1.1e-10 1
UNIPROTKB|G4MQ81 - symbol:MGG_09256 "Uncharacterized prot... 144 1.7e-10 2
POMBASE|SPAC683.02c - symbol:SPAC683.02c "zf-CCHC type zi... 147 2.0e-10 1
WB|WBGene00017210 - symbol:F07E5.5 species:6239 "Caenorha... 148 8.4e-10 1
SGD|S000002334 - symbol:AIR2 "RNA-binding subunit of the ... 146 1.1e-09 1
TAIR|locus:2183607 - symbol:AT5G36240 species:3702 "Arabi... 141 1.6e-09 1
ASPGD|ASPL0000046912 - symbol:AN1944 species:162425 "Emer... 148 2.2e-09 1
UNIPROTKB|F1ST82 - symbol:ZCCHC7 "Uncharacterized protein... 145 3.3e-09 1
UNIPROTKB|E2RIR0 - symbol:ZCCHC7 "Uncharacterized protein... 139 9.4e-09 1
ZFIN|ZDB-GENE-031030-9 - symbol:zcchc9 "zinc finger, CCHC... 134 1.0e-08 1
WB|WBGene00001598 - symbol:glh-1 species:6239 "Caenorhabd... 116 1.2e-08 2
UNIPROTKB|P34689 - symbol:glh-1 "ATP-dependent RNA helica... 116 1.2e-08 2
WB|WBGene00043995 - symbol:F40F12.9 species:6239 "Caenorh... 130 1.2e-08 1
CGD|CAL0005378 - symbol:orf19.4844 species:5476 "Candida ... 135 2.2e-08 1
UNIPROTKB|F1MUH8 - symbol:ZCCHC7 "Zinc finger CCHC domain... 136 3.1e-08 1
UNIPROTKB|Q2KIN0 - symbol:ZCCHC7 "Zinc finger CCHC domain... 136 3.1e-08 1
MGI|MGI:1916335 - symbol:Zcchc9 "zinc finger, CCHC domain... 128 6.0e-08 1
UNIPROTKB|F1M989 - symbol:Zcchc7 "Zinc finger CCHC domain... 132 7.6e-08 1
RGD|1310467 - symbol:Zcchc7 "zinc finger, CCHC domain con... 132 8.3e-08 1
WB|WBGene00001599 - symbol:glh-2 species:6239 "Caenorhabd... 132 1.8e-07 1
UNIPROTKB|Q966L9 - symbol:glh-2 "ATP-dependent RNA helica... 132 1.8e-07 1
MGI|MGI:2442912 - symbol:Zcchc7 "zinc finger, CCHC domain... 128 2.2e-07 1
TAIR|locus:2057295 - symbol:AT2G12880 species:3702 "Arabi... 118 2.3e-07 1
RGD|1307450 - symbol:Zcchc9 "zinc finger, CCHC domain con... 122 2.7e-07 1
UNIPROTKB|Q8N567 - symbol:ZCCHC9 "Zinc finger CCHC domain... 119 5.9e-07 1
UNIPROTKB|G5E6N6 - symbol:G5E6N6 "Uncharacterized protein... 118 6.4e-07 1
UNIPROTKB|Q8N3Z6 - symbol:ZCCHC7 "Zinc finger CCHC domain... 123 7.7e-07 1
UNIPROTKB|F1ML79 - symbol:ZCCHC9 "Uncharacterized protein... 117 9.9e-07 1
UNIPROTKB|D6RAT4 - symbol:CNBP "Cellular nucleic acid-bin... 112 1.0e-06 1
UNIPROTKB|E1BZR6 - symbol:ZCCHC9 "Uncharacterized protein... 115 1.1e-06 1
FB|FBgn0036668 - symbol:CG9715 species:7227 "Drosophila m... 127 1.2e-06 1
UNIPROTKB|F6V033 - symbol:ZCCHC9 "Uncharacterized protein... 116 1.3e-06 1
TAIR|locus:2149234 - symbol:AT5G20220 species:3702 "Arabi... 115 3.4e-06 1
UNIPROTKB|F1RF07 - symbol:ZCCHC9 "Uncharacterized protein... 111 4.5e-06 1
UNIPROTKB|P20873 - symbol:gag "Gag polyprotein" species:1... 115 5.0e-06 1
TAIR|locus:2083936 - symbol:RS2Z32 "arginine/serine-rich ... 110 1.3e-05 1
UNIPROTKB|P18800 - symbol:gag "Gag polyprotein" species:1... 111 1.3e-05 1
UNIPROTKB|P05887 - symbol:gag "Gag polyprotein" species:1... 111 1.3e-05 1
TAIR|locus:2049766 - symbol:RS2Z33 "arginine/serine-rich ... 110 1.4e-05 1
UNIPROTKB|P05960 - symbol:gag-pol "Gag-Pol polyprotein" s... 111 1.5e-05 1
UNIPROTKB|P20875 - symbol:gag-pol "Gag-Pol polyprotein" s... 115 1.8e-05 1
UNIPROTKB|P04594 - symbol:gag "Gag polyprotein" species:1... 110 3.5e-05 1
UNIPROTKB|P04593 - symbol:gag "Gag polyprotein" species:1... 110 3.5e-05 1
UNIPROTKB|P18802 - symbol:gag-pol "Gag-Pol polyprotein" s... 111 4.9e-05 1
UNIPROTKB|P20889 - symbol:gag "Gag polyprotein" species:1... 109 8.7e-05 1
UNIPROTKB|P12493 - symbol:gag "Gag polyprotein" species:1... 109 8.8e-05 1
UNIPROTKB|P12494 - symbol:gag "Gag polyprotein" species:1... 109 8.8e-05 1
UNIPROTKB|P35962 - symbol:gag "Gag polyprotein" species:3... 109 8.8e-05 1
UNIPROTKB|Q70622 - symbol:gag "Gag polyprotein" species:8... 109 8.8e-05 1
UNIPROTKB|Q72497 - symbol:gag "Gag polyprotein" species:1... 109 8.8e-05 1
UNIPROTKB|P12495 - symbol:gag "Gag polyprotein" species:1... 109 8.8e-05 1
UNIPROTKB|P03349 - symbol:gag "Gag polyprotein" species:1... 109 8.8e-05 1
UNIPROTKB|P03348 - symbol:gag "Gag polyprotein" species:1... 109 9.1e-05 1
UNIPROTKB|P12498 - symbol:gag-pol "Gag-Pol polyprotein" s... 109 9.6e-05 1
UNIPROTKB|P04588 - symbol:gag-pol "Gag-Pol polyprotein" s... 110 0.00013 1
UNIPROTKB|P04587 - symbol:gag-pol "Gag-Pol polyprotein" s... 110 0.00013 1
UNIPROTKB|F1PQG8 - symbol:ZCCHC3 "Uncharacterized protein... 106 0.00014 1
UNIPROTKB|P03347 - symbol:gag "Gag polyprotein" species:1... 108 0.00015 1
UNIPROTKB|J9P281 - symbol:ZCCHC3 "Uncharacterized protein... 106 0.00015 1
UNIPROTKB|P24736 - symbol:gag "Gag polyprotein" species:1... 107 0.00021 1
UNIPROTKB|P04591 - symbol:gag "Gag polyprotein" species:1... 107 0.00022 1
WARNING: Descriptions of 23 database sequences were not reported due to the
limiting value of parameter V = 100.
>FB|FBgn0034802 [details] [associations]
symbol:CG3800 species:7227 "Drosophila melanogaster"
[GO:0003676 "nucleic acid binding" evidence=ISS;NAS] [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR001878 Pfam:PF00098 PROSITE:PS50158 SMART:SM00343
EMBL:AE013599 GO:GO:0046872 GO:GO:0008270 GO:GO:0003676
eggNOG:COG5082 Gene3D:4.10.60.10 SUPFAM:SSF57756 KO:K09250
GeneTree:ENSGT00510000047065 OMA:QCYNCGE EMBL:AY075371
EMBL:AY118596 RefSeq:NP_001188992.1 RefSeq:NP_611739.1
UniGene:Dm.5513 ProteinModelPortal:Q8T8R1 SMR:Q8T8R1
MINT:MINT-943666 STRING:Q8T8R1 PaxDb:Q8T8R1 PRIDE:Q8T8R1
EnsemblMetazoa:FBtr0071994 EnsemblMetazoa:FBtr0303464 GeneID:37646
KEGG:dme:Dmel_CG3800 UCSC:CG3800-RA FlyBase:FBgn0034802
InParanoid:Q8T8R1 OrthoDB:EOG40RXZ0 PhylomeDB:Q8T8R1
GenomeRNAi:37646 NextBio:804714 Bgee:Q8T8R1 Uniprot:Q8T8R1
Length = 165
Score = 294 (108.6 bits), Expect = 5.2e-26, P = 5.2e-26
Identities = 51/114 (44%), Positives = 67/114 (58%)
Query: 39 CYKCNNYGHFARECATESVTCYNCSGQGHVAKDCTVKSSIICYNCNSSGHFARNCPNDSS 98
CYKCN +GHFAR C E+ CY C+G GH++KDCT + CY CN +GH+ RNCP +
Sbjct: 57 CYKCNQFGHFARACPEEAERCYRCNGIGHISKDCTQADNPTCYRCNKTGHWVRNCPEAVN 116
Query: 99 KR------CYACHQAGHMAKECPGQTAGKSPEPVVDMSLTCYVCGHQGHLSYDC 146
+R CY C++ GH++K CP + S TCY CG GHL +C
Sbjct: 117 ERGPTNVSCYKCNRTGHISKNCP------------ETSKTCYGCGKSGHLRREC 158
Score = 248 (92.4 bits), Expect = 3.9e-21, P = 3.9e-21
Identities = 41/114 (35%), Positives = 68/114 (59%)
Query: 8 QCYNCFDFGHYQYSCPQKSSADARGDKVGIVCYKCNNYGHFARECA-TESVTCYNCSGQG 66
+CY C FGH+ +CP+++ CY+CN GH +++C ++ TCY C+ G
Sbjct: 56 KCYKCNQFGHFARACPEEAER----------CYRCNGIGHISKDCTQADNPTCYRCNKTG 105
Query: 67 HVAKDC--TVK----SSIICYNCNSSGHFARNCPNDSSKRCYACHQAGHMAKEC 114
H ++C V +++ CY CN +GH ++NCP ++SK CY C ++GH+ +EC
Sbjct: 106 HWVRNCPEAVNERGPTNVSCYKCNRTGHISKNCP-ETSKTCYGCGKSGHLRREC 158
Score = 191 (72.3 bits), Expect = 4.2e-15, P = 4.2e-15
Identities = 43/152 (28%), Positives = 63/152 (41%)
Query: 1 MSSTSTIQCYNCFDFGHYQYSCPQKSSADARGDKVGIVCYKCNNYGHFARECATESVTCY 60
MS ++T CY C GH+ C G G G+ CY
Sbjct: 1 MSMSAT--CYKCNRPGHFARDCSLGGGGGPGGVGGGGGGGGGGMRGNDGGGMRRNREKCY 58
Query: 61 NCSGQGHVAKDCTVKSSIICYNCNSSGHFARNCPNDSSKRCYACHQAGHMAKECPGQTAG 120
C+ GH A+ C ++ CY CN GH +++C + CY C++ GH + CP
Sbjct: 59 KCNQFGHFARACPEEAER-CYRCNGIGHISKDCTQADNPTCYRCNKTGHWVRNCPEAVNE 117
Query: 121 KSPEPVVDMSLTCYVCGHQGHLSYDCKLVQKS 152
+ P V +CY C GH+S +C K+
Sbjct: 118 RGPTNV-----SCYKCNRTGHISKNCPETSKT 144
Score = 158 (60.7 bits), Expect = 1.3e-11, P = 1.3e-11
Identities = 26/67 (38%), Positives = 37/67 (55%)
Query: 9 CYNCFDFGHYQYSCPQKSSADARGDKVGIVCYKCNNYGHFARECATESVTCYNCSGQGHV 68
CY C GH+ +CP+ + + RG + CYKCN GH ++ C S TCY C GH+
Sbjct: 98 CYRCNKTGHWVRNCPE--AVNERGP-TNVSCYKCNRTGHISKNCPETSKTCYGCGKSGHL 154
Query: 69 AKDCTVK 75
++C K
Sbjct: 155 RRECDEK 161
>ZFIN|ZDB-GENE-030131-5045 [details] [associations]
symbol:cnbpa "CCHC-type zinc finger, nucleic acid
binding protein a" species:7955 "Danio rerio" [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0060322 "head development" evidence=IMP]
[GO:0014029 "neural crest formation" evidence=IMP] [GO:0014036
"neural crest cell fate specification" evidence=IMP] [GO:0051216
"cartilage development" evidence=IMP] [GO:0003697 "single-stranded
DNA binding" evidence=IDA] [GO:0003723 "RNA binding" evidence=IDA]
[GO:0046872 "metal ion binding" evidence=IEA] InterPro:IPR001878
Pfam:PF00098 PROSITE:PS50158 SMART:SM00343
ZFIN:ZDB-GENE-030131-5045 GO:GO:0046872 GO:GO:0008270 GO:GO:0003723
GO:GO:0003697 GO:GO:0051216 Gene3D:4.10.60.10 SUPFAM:SSF57756
HOGENOM:HOG000186262 HOVERGEN:HBG000397 GO:GO:0060322 GO:GO:0014036
InterPro:IPR025836 Pfam:PF14392 EMBL:AY228240 IPI:IPI00481422
UniGene:Dr.31379 STRING:Q801Z9 InParanoid:Q801Z9
ArrayExpress:Q801Z9 Uniprot:Q801Z9
Length = 163
Score = 290 (107.1 bits), Expect = 1.4e-25, P = 1.4e-25
Identities = 55/156 (35%), Positives = 77/156 (49%)
Query: 5 STIQCYNCFDFGHYQYSCPQKSSADARGDKVG--IVCYKCNNYGHFARECATESVTCYNC 62
ST +C+ C GH+ +CP RG G + CY+C GH AR+C CYNC
Sbjct: 4 STSECFGCGRSGHWIKNCPNAGRGRGRGRGRGKDLFCYRCGEQGHIARDCEQTEDACYNC 63
Query: 63 SGQGHVAKDCTV---KSSIICYNCNSSGHFARNCPNDSSKRCYACHQAGHMAKECPG--- 116
GH+++DC + CYNC +GH AR+C + + ++CY+C GH K C
Sbjct: 64 HRSGHISRDCKEPKKEREQCCYNCGKAGHVARDCDHANEQKCYSCGGFGHFQKLCDKVKC 123
Query: 117 QTAGKSPEPVVDMS----LTCYVCGHQGHLSYDCKL 148
G+ V S + CY CG GHL+ DC +
Sbjct: 124 YRCGEIGHVAVQCSKATEVNCYNCGKTGHLARDCSI 159
Score = 190 (71.9 bits), Expect = 5.4e-15, P = 5.4e-15
Identities = 41/127 (32%), Positives = 59/127 (46%)
Query: 39 CYKCNNYGHFARECAT------------ESVTCYNCSGQGHVAKDCTVKSSIICYNCNSS 86
C+ C GH+ + C + + CY C QGH+A+DC ++ CYNC+ S
Sbjct: 8 CFGCGRSGHWIKNCPNAGRGRGRGRGRGKDLFCYRCGEQGHIARDCE-QTEDACYNCHRS 66
Query: 87 GHFARNCPNDSSKR---CYACHQAGHMAKECPGQTAGKSPEPVVDMSLTCYVCGHQGHLS 143
GH +R+C +R CY C +AGH+A++C K CY CG GH
Sbjct: 67 GHISRDCKEPKKEREQCCYNCGKAGHVARDCDHANEQK-----------CYSCGGFGHFQ 115
Query: 144 YDCKLVQ 150
C V+
Sbjct: 116 KLCDKVK 122
Score = 183 (69.5 bits), Expect = 3.0e-14, P = 3.0e-14
Identities = 35/90 (38%), Positives = 45/90 (50%)
Query: 9 CYNCFDFGHYQYSCPQKSSADARGDKVGIVCYKCNNYGHFARECATESVTCYNCSGQGHV 68
CYNC GH C A K CY C +GHF + C + V CY C GHV
Sbjct: 84 CYNCGKAGHVARDCDH-----ANEQK----CYSCGGFGHFQKLC--DKVKCYRCGEIGHV 132
Query: 69 AKDCTVKSSIICYNCNSSGHFARNCPNDSS 98
A C+ + + CYNC +GH AR+C ++S
Sbjct: 133 AVQCSKATEVNCYNCGKTGHLARDCSIEAS 162
Score = 123 (48.4 bits), Expect = 6.8e-08, P = 6.8e-08
Identities = 29/83 (34%), Positives = 38/83 (45%)
Query: 80 CYNCNSSGHFARNCPNDSSKR-----------CYACHQAGHMAKECPGQTAGKSPEPVVD 128
C+ C SGH+ +NCPN R CY C + GH+A++C E D
Sbjct: 8 CFGCGRSGHWIKNCPNAGRGRGRGRGRGKDLFCYRCGEQGHIARDC---------EQTED 58
Query: 129 MSLTCYVCGHQGHLSYDCKLVQK 151
CY C GH+S DCK +K
Sbjct: 59 ---ACYNCHRSGHISRDCKEPKK 78
>UNIPROTKB|B4DP17 [details] [associations]
symbol:CNBP "cDNA FLJ61146, highly similar to Cellular
nucleic acid-binding protein" species:9606 "Homo sapiens"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] InterPro:IPR001878 Pfam:PF00098
PROSITE:PS50158 SMART:SM00343 GO:GO:0046872 GO:GO:0008270
GO:GO:0003676 Gene3D:4.10.60.10 SUPFAM:SSF57756
HOGENOM:HOG000186262 HOVERGEN:HBG000397 EMBL:AC108673 EMBL:AC135587
UniGene:Hs.518249 HGNC:HGNC:13164 ChiTaRS:CNBP EMBL:AK298154
IPI:IPI00977873 SMR:B4DP17 STRING:B4DP17 Ensembl:ENST00000500450
UCSC:uc011bku.2 Uniprot:B4DP17
Length = 160
Score = 288 (106.4 bits), Expect = 2.2e-25, P = 2.2e-25
Identities = 53/156 (33%), Positives = 80/156 (51%)
Query: 5 STIQCYNCFDFGHYQYSCPQKSSADARG--DKVGIVCYKCNNYGHFARECATESVTCYNC 62
S+ +C+ C GH+ CP RG + +CY+C GH A++C + CYNC
Sbjct: 2 SSNECFKCGRSGHWARECPT-GGGRGRGMRSRGRDICYRCGESGHLAKDCDLQEDACYNC 60
Query: 63 SGQGHVAKDCTV---KSSIICYNCNSSGHFARNCPNDSSKRCYACHQAGHMAKECPG--- 116
GH+AKDC + CYNC GH AR+C + ++CY+C + GH+ K+C
Sbjct: 61 GRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQKCYSCGEFGHIQKDCTKVKC 120
Query: 117 QTAGKSPEPVVDMSLT----CYVCGHQGHLSYDCKL 148
G++ ++ S T CY CG GHL+ +C +
Sbjct: 121 YRCGETGHVAINCSKTSEVNCYRCGESGHLARECTI 156
Score = 213 (80.0 bits), Expect = 2.0e-17, P = 2.0e-17
Identities = 45/126 (35%), Positives = 59/126 (46%)
Query: 39 CYKCNNYGHFARECATESVT-----------CYNCSGQGHVAKDCTVKSSIICYNCNSSG 87
C+KC GH+AREC T CY C GH+AKDC ++ CYNC G
Sbjct: 6 CFKCGRSGHWARECPTGGGRGRGMRSRGRDICYRCGESGHLAKDCDLQEDA-CYNCGRGG 64
Query: 88 HFARNCPNDSSKR---CYACHQAGHMAKECPGQTAGKSPEPVVDMSLTCYVCGHQGHLSY 144
H A++C +R CY C + GH+A++C K CY CG GH+
Sbjct: 65 HIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQK-----------CYSCGEFGHIQK 113
Query: 145 DCKLVQ 150
DC V+
Sbjct: 114 DCTKVK 119
Score = 142 (55.0 bits), Expect = 6.6e-10, P = 6.6e-10
Identities = 25/71 (35%), Positives = 39/71 (54%)
Query: 8 QCYNCFDFGHYQYSCPQKSSADARGDKVGIVCYKCNNYGHFARECA-TESVTCYNCSGQG 66
+CY+C +FGH Q C + + CY+C GH A C+ T V CY C G
Sbjct: 101 KCYSCGEFGHIQKDCTK------------VKCYRCGETGHVAINCSKTSEVNCYRCGESG 148
Query: 67 HVAKDCTVKSS 77
H+A++CT++++
Sbjct: 149 HLARECTIEAT 159
>ZFIN|ZDB-GENE-030131-7782 [details] [associations]
symbol:cnbpb "CCHC-type zinc finger, nucleic acid
binding protein b" species:7955 "Danio rerio" [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0046872 "metal ion binding" evidence=IEA]
InterPro:IPR001878 Pfam:PF00098 PROSITE:PS50158 SMART:SM00343
ZFIN:ZDB-GENE-030131-7782 GO:GO:0046872 GO:GO:0008270 GO:GO:0003676
Gene3D:4.10.60.10 SUPFAM:SSF57756 GeneTree:ENSGT00510000047065
InterPro:IPR025836 Pfam:PF14392 EMBL:CR855375 IPI:IPI00862287
Ensembl:ENSDART00000104520 Bgee:E7FCQ0 Uniprot:E7FCQ0
Length = 243
Score = 279 (103.3 bits), Expect = 2.0e-24, P = 2.0e-24
Identities = 51/156 (32%), Positives = 79/156 (50%)
Query: 5 STIQCYNCFDFGHYQYSCPQ--KSSADARGDKVGIVCYKCNNYGHFARECATESVTCYNC 62
S+ +C+ C GH+ +CP + RG + CY+C GH AR+C CYNC
Sbjct: 84 SSNECFGCGRTGHWIKNCPNAGRGRGKGRGRGKDLFCYRCGEPGHVARDCERTEDACYNC 143
Query: 63 SGQGHVAKDCTV---KSSIICYNCNSSGHFARNCPNDSSKRCYACHQAGHMAKECPG--- 116
GH+++DC + +CYNC +GH AR+C + + ++CY+C GH+ K C
Sbjct: 144 GRGGHISRDCKEPKKEREQVCYNCGKAGHMARDCDHANEQKCYSCGGFGHIQKGCEKVKC 203
Query: 117 QTAGKSPEPVVDMS----LTCYVCGHQGHLSYDCKL 148
G+ V S + CY CG GH++ +C +
Sbjct: 204 YRCGEIGHVAVQCSKASEVNCYNCGKSGHVAKECTI 239
Score = 192 (72.6 bits), Expect = 3.3e-15, P = 3.3e-15
Identities = 41/127 (32%), Positives = 58/127 (45%)
Query: 39 CYKCNNYGHFARECAT------------ESVTCYNCSGQGHVAKDCTVKSSIICYNCNSS 86
C+ C GH+ + C + + CY C GHVA+DC ++ CYNC
Sbjct: 88 CFGCGRTGHWIKNCPNAGRGRGKGRGRGKDLFCYRCGEPGHVARDCE-RTEDACYNCGRG 146
Query: 87 GHFARNCPNDSSKR---CYACHQAGHMAKECPGQTAGKSPEPVVDMSLTCYVCGHQGHLS 143
GH +R+C +R CY C +AGHMA++C K CY CG GH+
Sbjct: 147 GHISRDCKEPKKEREQVCYNCGKAGHMARDCDHANEQK-----------CYSCGGFGHIQ 195
Query: 144 YDCKLVQ 150
C+ V+
Sbjct: 196 KGCEKVK 202
Score = 152 (58.6 bits), Expect = 6.2e-11, P = 6.2e-11
Identities = 30/71 (42%), Positives = 41/71 (57%)
Query: 8 QCYNCFDFGHYQYSCPQKSSADARGDKVGIVCYKCNNYGHFARECATES-VTCYNCSGQG 66
+CY+C FGH Q C +KV CY+C GH A +C+ S V CYNC G
Sbjct: 184 KCYSCGGFGHIQKGC----------EKVK--CYRCGEIGHVAVQCSKASEVNCYNCGKSG 231
Query: 67 HVAKDCTVKSS 77
HVAK+CT++++
Sbjct: 232 HVAKECTIEAT 242
Score = 129 (50.5 bits), Expect = 3.2e-08, P = 3.2e-08
Identities = 33/95 (34%), Positives = 44/95 (46%)
Query: 72 CTVKSSII----CYNCNSSGHFARNCPNDSSKR-----------CYACHQAGHMAKECPG 116
C VKS + C+ C +GH+ +NCPN R CY C + GH+A++C
Sbjct: 76 CRVKSEDMSSNECFGCGRTGHWIKNCPNAGRGRGKGRGRGKDLFCYRCGEPGHVARDC-- 133
Query: 117 QTAGKSPEPVVDMSLTCYVCGHQGHLSYDCKLVQK 151
E D CY CG GH+S DCK +K
Sbjct: 134 -------ERTED---ACYNCGRGGHISRDCKEPKK 158
>UNIPROTKB|G3MZ41 [details] [associations]
symbol:ZCCHC13 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0008270 "zinc ion binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR001878
Pfam:PF00098 PROSITE:PS50158 SMART:SM00343 GO:GO:0046872
GO:GO:0008270 GO:GO:0003676 Gene3D:4.10.60.10 SUPFAM:SSF57756
GeneTree:ENSGT00510000047065 OMA:SSKECFK EMBL:DAAA02072583
Ensembl:ENSBTAT00000001124 Uniprot:G3MZ41
Length = 175
Score = 273 (101.2 bits), Expect = 8.7e-24, P = 8.7e-24
Identities = 50/169 (29%), Positives = 83/169 (49%)
Query: 2 SSTSTIQCYNCFDFGHYQYSCPQKSSADARGDK------------VGIVCYKCNNYGHFA 49
++ S+ +C+ C GH+ +C + A RG + + ++CY+C +GH+A
Sbjct: 3 TAMSSKECFKCGRVGHWAPACSKGGGARGRGARGRGHGAQCSSTTLPVICYRCGKFGHYA 62
Query: 50 RECATESVTCYNCSGQGHVAKDCTV---KSSIICYNCNSSGHFARNCPNDSSKRCYACHQ 106
++C CYNC GH+AKDC + CY C GH AR+C ++CY+C +
Sbjct: 63 KDCDLLDDICYNCGKSGHIAKDCAEPKREGERCCYTCGRPGHLARDCDRQEERKCYSCGK 122
Query: 107 AGHMAKECPG---QTAGKSPEPVVDM----SLTCYVCGHQGHLSYDCKL 148
+GH+ K C G+ ++ + CY CG GHL+ +C +
Sbjct: 123 SGHIQKYCTQVKCYRCGEIGHVAINCRKMNEVNCYRCGESGHLTRECPI 171
Score = 201 (75.8 bits), Expect = 3.7e-16, P = 3.7e-16
Identities = 53/153 (34%), Positives = 70/153 (45%)
Query: 4 TSTIQCYNCFDFGHYQYSCPQKSSAD-ARGDKVGIVCYKCNNYGHFARECATES--VTCY 60
T+ + CF G + P S ARG G GH A +C++ + V CY
Sbjct: 2 TTAMSSKECFKCGRVGHWAPACSKGGGARGR--G-----ARGRGHGA-QCSSTTLPVICY 53
Query: 61 NCSGQGHVAKDCTVKSSIICYNCNSSGHFARNC--PNDSSKRC-YACHQAGHMAKECPGQ 117
C GH AKDC + I CYNC SGH A++C P +RC Y C + GH+A++C Q
Sbjct: 54 RCGKFGHYAKDCDLLDDI-CYNCGKSGHIAKDCAEPKREGERCCYTCGRPGHLARDCDRQ 112
Query: 118 TAGKSPEPVVDMSLTCYVCGHQGHLSYDCKLVQ 150
K CY CG GH+ C V+
Sbjct: 113 EERK-----------CYSCGKSGHIQKYCTQVK 134
Score = 157 (60.3 bits), Expect = 1.7e-11, P = 1.7e-11
Identities = 30/90 (33%), Positives = 39/90 (43%)
Query: 9 CYNCFDFGHYQYSCPQKSSADARGDKVGIVCYKCNNYGHFARECATESVTCYNCSGQGHV 68
CY C GH C ++ CY C GH + C V CY C GHV
Sbjct: 96 CYTCGRPGHLARDCDRQEERK---------CYSCGKSGHIQKYCT--QVKCYRCGEIGHV 144
Query: 69 AKDCTVKSSIICYNCNSSGHFARNCPNDSS 98
A +C + + CY C SGH R CP +++
Sbjct: 145 AINCRKMNEVNCYRCGESGHLTRECPIEAN 174
>UNIPROTKB|Q3T0Q6 [details] [associations]
symbol:CNBP "Cellular nucleic acid-binding protein"
species:9913 "Bos taurus" [GO:0005783 "endoplasmic reticulum"
evidence=IEA] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=IEA] [GO:0008284
"positive regulation of cell proliferation" evidence=IEA]
[GO:0005829 "cytosol" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] InterPro:IPR001878 Pfam:PF00098
PROSITE:PS50158 SMART:SM00343 GO:GO:0005783 GO:GO:0005829
GO:GO:0005634 GO:GO:0046872 GO:GO:0003677 GO:GO:0008284
GO:GO:0008270 GO:GO:0045944 GO:GO:0006351 eggNOG:COG5082
Gene3D:4.10.60.10 SUPFAM:SSF57756 HOGENOM:HOG000186262 KO:K09250
OMA:FQFMSSS EMBL:BC102298 IPI:IPI00697831 RefSeq:NP_001029396.1
UniGene:Bt.9541 ProteinModelPortal:Q3T0Q6 STRING:Q3T0Q6
PRIDE:Q3T0Q6 Ensembl:ENSBTAT00000016130 GeneID:504831
KEGG:bta:504831 CTD:7555 GeneTree:ENSGT00510000047065
HOVERGEN:HBG000397 InParanoid:Q3T0Q6 OrthoDB:EOG45HRZN
NextBio:20866851 Uniprot:Q3T0Q6
Length = 170
Score = 273 (101.2 bits), Expect = 8.7e-24, P = 8.7e-24
Identities = 53/165 (32%), Positives = 81/165 (49%)
Query: 5 STIQCYNCFDFGHYQYSCPQKSSAD----ARG-------DKVGIVCYKCNNYGHFARECA 53
S+ +C+ C GH+ CP +RG + +CY+C GH A++C
Sbjct: 2 SSNECFKCGRSGHWARECPTGGGRGRGMRSRGRGFQFVSSSLPDICYRCGESGHLAKDCD 61
Query: 54 TESVTCYNCSGQGHVAKDCTV---KSSIICYNCNSSGHFARNCPNDSSKRCYACHQAGHM 110
+ CYNC GH+AKDC + CYNC GH AR+C + ++CY+C + GH+
Sbjct: 62 LQEDACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQKCYSCGEFGHI 121
Query: 111 AKECPG---QTAGKSPEPVVDMSLT----CYVCGHQGHLSYDCKL 148
K+C G++ ++ S T CY CG GHL+ +C +
Sbjct: 122 QKDCTKVKCYRCGETGHVAINCSKTSEVNCYRCGESGHLARECTI 166
Score = 197 (74.4 bits), Expect = 9.8e-16, P = 9.8e-16
Identities = 46/136 (33%), Positives = 62/136 (45%)
Query: 39 CYKCNNYGHFARECAT---------------ESVT------CYNCSGQGHVAKDCTVKSS 77
C+KC GH+AREC T + V+ CY C GH+AKDC ++
Sbjct: 6 CFKCGRSGHWARECPTGGGRGRGMRSRGRGFQFVSSSLPDICYRCGESGHLAKDCDLQED 65
Query: 78 IICYNCNSSGHFARNCPNDSSKR---CYACHQAGHMAKECPGQTAGKSPEPVVDMSLTCY 134
CYNC GH A++C +R CY C + GH+A++C K CY
Sbjct: 66 A-CYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQK-----------CY 113
Query: 135 VCGHQGHLSYDCKLVQ 150
CG GH+ DC V+
Sbjct: 114 SCGEFGHIQKDCTKVK 129
Score = 142 (55.0 bits), Expect = 6.6e-10, P = 6.6e-10
Identities = 25/71 (35%), Positives = 39/71 (54%)
Query: 8 QCYNCFDFGHYQYSCPQKSSADARGDKVGIVCYKCNNYGHFARECA-TESVTCYNCSGQG 66
+CY+C +FGH Q C + + CY+C GH A C+ T V CY C G
Sbjct: 111 KCYSCGEFGHIQKDCTK------------VKCYRCGETGHVAINCSKTSEVNCYRCGESG 158
Query: 67 HVAKDCTVKSS 77
H+A++CT++++
Sbjct: 159 HLARECTIEAT 169
>UNIPROTKB|F1N8C2 [details] [associations]
symbol:CNBP "Cellular nucleic acid-binding protein"
species:9031 "Gallus gallus" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005783 "endoplasmic
reticulum" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
[GO:0008284 "positive regulation of cell proliferation"
evidence=IEA] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=IEA] InterPro:IPR001878
Pfam:PF00098 PROSITE:PS50158 SMART:SM00343 GO:GO:0005783
GO:GO:0005829 GO:GO:0005634 GO:GO:0046872 GO:GO:0008284
GO:GO:0008270 GO:GO:0045944 GO:GO:0003676 Gene3D:4.10.60.10
SUPFAM:SSF57756 OMA:FQFMSSS GeneTree:ENSGT00510000047065
IPI:IPI00582111 EMBL:AADN02013931 Ensembl:ENSGALT00000036274
ArrayExpress:F1N8C2 Uniprot:F1N8C2
Length = 171
Score = 272 (100.8 bits), Expect = 1.1e-23, P = 1.1e-23
Identities = 54/167 (32%), Positives = 83/167 (49%)
Query: 5 STIQCYNCFDFGHYQYSCP----QKSSADARGDKVGI---------VCYKCNNYGHFARE 51
S+ +C+ C GH+ CP + +RG + G +CY+C GH A++
Sbjct: 2 SSNECFKCGRTGHWARECPTGIGRGRGMRSRG-RAGFQFMSSSLPDICYRCGESGHLAKD 60
Query: 52 CATESVTCYNCSGQGHVAKDCTV---KSSIICYNCNSSGHFARNCPNDSSKRCYACHQAG 108
C + CYNC GH+AKDC + CYNC GH AR+C + ++CY+C + G
Sbjct: 61 CDLQEDACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQKCYSCGEFG 120
Query: 109 HMAKECPG---QTAGKSPEPVVDMSLT----CYVCGHQGHLSYDCKL 148
H+ K+C G++ ++ S T CY CG GHL+ +C +
Sbjct: 121 HIQKDCTKVKCYRCGETGHVAINCSKTSEVNCYRCGESGHLARECTI 167
Score = 194 (73.4 bits), Expect = 2.0e-15, P = 2.0e-15
Identities = 46/137 (33%), Positives = 61/137 (44%)
Query: 39 CYKCNNYGHFARECAT--------------------ESVT--CYNCSGQGHVAKDCTVKS 76
C+KC GH+AREC T S+ CY C GH+AKDC ++
Sbjct: 6 CFKCGRTGHWARECPTGIGRGRGMRSRGRAGFQFMSSSLPDICYRCGESGHLAKDCDLQE 65
Query: 77 SIICYNCNSSGHFARNCPNDSSKR---CYACHQAGHMAKECPGQTAGKSPEPVVDMSLTC 133
CYNC GH A++C +R CY C + GH+A++C K C
Sbjct: 66 DA-CYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQK-----------C 113
Query: 134 YVCGHQGHLSYDCKLVQ 150
Y CG GH+ DC V+
Sbjct: 114 YSCGEFGHIQKDCTKVK 130
Score = 142 (55.0 bits), Expect = 6.6e-10, P = 6.6e-10
Identities = 25/71 (35%), Positives = 39/71 (54%)
Query: 8 QCYNCFDFGHYQYSCPQKSSADARGDKVGIVCYKCNNYGHFARECA-TESVTCYNCSGQG 66
+CY+C +FGH Q C + + CY+C GH A C+ T V CY C G
Sbjct: 112 KCYSCGEFGHIQKDCTK------------VKCYRCGETGHVAINCSKTSEVNCYRCGESG 159
Query: 67 HVAKDCTVKSS 77
H+A++CT++++
Sbjct: 160 HLARECTIEAT 170
>UNIPROTKB|P62633 [details] [associations]
symbol:CNBP "Cellular nucleic acid-binding protein"
species:9606 "Homo sapiens" [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=ISS]
[GO:0008284 "positive regulation of cell proliferation"
evidence=ISS] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=ISS] [GO:0005634
"nucleus" evidence=ISS] [GO:0005783 "endoplasmic reticulum"
evidence=ISS] [GO:0005829 "cytosol" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
[GO:0006695 "cholesterol biosynthetic process" evidence=TAS]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=TAS] InterPro:IPR001878 Pfam:PF00098
PROSITE:PS50158 SMART:SM00343 GO:GO:0005783 GO:GO:0005829
GO:GO:0005634 GO:GO:0046872 GO:GO:0003677 GO:GO:0008284
EMBL:CH471052 GO:GO:0008270 GO:GO:0045944 GO:GO:0003700
GO:GO:0006351 GO:GO:0006695 eggNOG:COG5082 Gene3D:4.10.60.10
SUPFAM:SSF57756 HOGENOM:HOG000186262 KO:K09250 CTD:7555
HOVERGEN:HBG000397 OrthoDB:EOG45HRZN EMBL:M28372 EMBL:U19765
EMBL:AY329622 EMBL:AK054592 EMBL:DQ092367 EMBL:DQ091187
EMBL:AK314380 EMBL:BT019613 EMBL:AC108673 EMBL:AC135587
EMBL:BC000288 EMBL:BC014911 EMBL:BC093058 IPI:IPI00430812
IPI:IPI00430813 IPI:IPI00430814 IPI:IPI00895911 IPI:IPI00967344
PIR:A32760 RefSeq:NP_001120665.1 RefSeq:NP_001120666.1
RefSeq:NP_001120668.1 RefSeq:NP_003409.1 UniGene:Hs.518249
ProteinModelPortal:P62633 SMR:P62633 IntAct:P62633 STRING:P62633
PhosphoSite:P62633 DMDM:50401852 PaxDb:P62633 PRIDE:P62633
DNASU:7555 Ensembl:ENST00000422453 Ensembl:ENST00000446936
Ensembl:ENST00000451728 Ensembl:ENST00000502976
Ensembl:ENST00000504813 GeneID:7555 KEGG:hsa:7555 UCSC:uc003elq.4
UCSC:uc003elr.4 GeneCards:GC03M128886 HGNC:HGNC:13164 MIM:116955
MIM:602668 neXtProt:NX_P62633 Orphanet:606 PharmGKB:PA37737
InParanoid:P62633 PhylomeDB:P62633 ChiTaRS:CNBP GenomeRNAi:7555
NextBio:29559 ArrayExpress:P62633 Bgee:P62633 CleanEx:HS_CNBP
Genevestigator:P62633 GermOnline:ENSG00000169714 Uniprot:P62633
Length = 177
Score = 259 (96.2 bits), Expect = 2.6e-22, P = 2.6e-22
Identities = 44/121 (36%), Positives = 66/121 (54%)
Query: 38 VCYKCNNYGHFARECATESVTCYNCSGQGHVAKDCTV---KSSIICYNCNSSGHFARNCP 94
+CY+C GH A++C + CYNC GH+AKDC + CYNC GH AR+C
Sbjct: 53 ICYRCGESGHLAKDCDLQEDACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCD 112
Query: 95 NDSSKRCYACHQAGHMAKECPG---QTAGKSPEPVVDMSLT----CYVCGHQGHLSYDCK 147
+ ++CY+C + GH+ K+C G++ ++ S T CY CG GHL+ +C
Sbjct: 113 HADEQKCYSCGEFGHIQKDCTKVKCYRCGETGHVAINCSKTSEVNCYRCGESGHLARECT 172
Query: 148 L 148
+
Sbjct: 173 I 173
Score = 201 (75.8 bits), Expect = 3.7e-16, P = 3.7e-16
Identities = 46/150 (30%), Positives = 66/150 (44%)
Query: 5 STIQCYNCFDFGHYQYSCPQKSSADARGDKV-GIVCYKCNNYGHFARECATESVTCYNCS 63
S+ +C+ C GH+ CP RG + G + + F + CY C
Sbjct: 2 SSNECFKCGRSGHWARECPT-GGGRGRGMRSRGRGGFTSDRGFQFVSSSLPD--ICYRCG 58
Query: 64 GQGHVAKDCTVKSSIICYNCNSSGHFARNCPNDSSKR---CYACHQAGHMAKECPGQTAG 120
GH+AKDC ++ CYNC GH A++C +R CY C + GH+A++C
Sbjct: 59 ESGHLAKDCDLQEDA-CYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQ 117
Query: 121 KSPEPVVDMSLTCYVCGHQGHLSYDCKLVQ 150
K CY CG GH+ DC V+
Sbjct: 118 K-----------CYSCGEFGHIQKDCTKVK 136
Score = 142 (55.0 bits), Expect = 6.6e-10, P = 6.6e-10
Identities = 25/71 (35%), Positives = 39/71 (54%)
Query: 8 QCYNCFDFGHYQYSCPQKSSADARGDKVGIVCYKCNNYGHFARECA-TESVTCYNCSGQG 66
+CY+C +FGH Q C + + CY+C GH A C+ T V CY C G
Sbjct: 118 KCYSCGEFGHIQKDCTK------------VKCYRCGETGHVAINCSKTSEVNCYRCGESG 165
Query: 67 HVAKDCTVKSS 77
H+A++CT++++
Sbjct: 166 HLARECTIEAT 176
>UNIPROTKB|Q4R501 [details] [associations]
symbol:Q4R501 "Brain cDNA, clone: QnpA-14556, similar to
human zinc finger protein 9 (a cellular retroviral nucleicacid
binding protein) (ZNF9)," species:9541 "Macaca fascicularis"
[GO:0005634 "nucleus" evidence=ISS] [GO:0005783 "endoplasmic
reticulum" evidence=ISS] [GO:0005829 "cytosol" evidence=ISS]
[GO:0008284 "positive regulation of cell proliferation"
evidence=ISS] [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=ISS] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=ISS]
InterPro:IPR001878 Pfam:PF00098 PROSITE:PS50158 SMART:SM00343
GO:GO:0005783 GO:GO:0005829 GO:GO:0005634 GO:GO:0046872
GO:GO:0008284 GO:GO:0008270 GO:GO:0045944 GO:GO:0003676
Gene3D:4.10.60.10 SUPFAM:SSF57756 HOVERGEN:HBG000397 EMBL:AB169743
EMBL:AB174174 ProteinModelPortal:Q4R501 SMR:Q4R501 PRIDE:Q4R501
Uniprot:Q4R501
Length = 177
Score = 259 (96.2 bits), Expect = 2.6e-22, P = 2.6e-22
Identities = 44/121 (36%), Positives = 66/121 (54%)
Query: 38 VCYKCNNYGHFARECATESVTCYNCSGQGHVAKDCTV---KSSIICYNCNSSGHFARNCP 94
+CY+C GH A++C + CYNC GH+AKDC + CYNC GH AR+C
Sbjct: 53 ICYRCGESGHLAKDCDLQEDACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCD 112
Query: 95 NDSSKRCYACHQAGHMAKECPG---QTAGKSPEPVVDMSLT----CYVCGHQGHLSYDCK 147
+ ++CY+C + GH+ K+C G++ ++ S T CY CG GHL+ +C
Sbjct: 113 HADEQKCYSCGEFGHIQKDCTKVKCYRCGETGHVAINCSKTSEVNCYRCGESGHLARECT 172
Query: 148 L 148
+
Sbjct: 173 I 173
Score = 201 (75.8 bits), Expect = 3.7e-16, P = 3.7e-16
Identities = 46/150 (30%), Positives = 66/150 (44%)
Query: 5 STIQCYNCFDFGHYQYSCPQKSSADARGDKV-GIVCYKCNNYGHFARECATESVTCYNCS 63
S+ +C+ C GH+ CP RG + G + + F + CY C
Sbjct: 2 SSNECFKCGRSGHWARECPT-GGGRGRGMRSRGRGGFTSDRGFQFVSSSLPD--ICYRCG 58
Query: 64 GQGHVAKDCTVKSSIICYNCNSSGHFARNCPNDSSKR---CYACHQAGHMAKECPGQTAG 120
GH+AKDC ++ CYNC GH A++C +R CY C + GH+A++C
Sbjct: 59 ESGHLAKDCDLQEDA-CYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQ 117
Query: 121 KSPEPVVDMSLTCYVCGHQGHLSYDCKLVQ 150
K CY CG GH+ DC V+
Sbjct: 118 K-----------CYSCGEFGHIQKDCTKVK 136
Score = 142 (55.0 bits), Expect = 6.6e-10, P = 6.6e-10
Identities = 25/71 (35%), Positives = 39/71 (54%)
Query: 8 QCYNCFDFGHYQYSCPQKSSADARGDKVGIVCYKCNNYGHFARECA-TESVTCYNCSGQG 66
+CY+C +FGH Q C + + CY+C GH A C+ T V CY C G
Sbjct: 118 KCYSCGEFGHIQKDCTK------------VKCYRCGETGHVAINCSKTSEVNCYRCGESG 165
Query: 67 HVAKDCTVKSS 77
H+A++CT++++
Sbjct: 166 HLARECTIEAT 176
>UNIPROTKB|Q5R5R5 [details] [associations]
symbol:CNBP "Cellular nucleic acid-binding protein"
species:9601 "Pongo abelii" [GO:0005634 "nucleus" evidence=ISS]
[GO:0005783 "endoplasmic reticulum" evidence=ISS] [GO:0005829
"cytosol" evidence=ISS] [GO:0008284 "positive regulation of cell
proliferation" evidence=ISS] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=ISS] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=ISS] InterPro:IPR001878 Pfam:PF00098 PROSITE:PS50158
SMART:SM00343 GO:GO:0005783 GO:GO:0005829 GO:GO:0005634
GO:GO:0046872 GO:GO:0003677 GO:GO:0008284 GO:GO:0008270
GO:GO:0045944 GO:GO:0006351 Gene3D:4.10.60.10 SUPFAM:SSF57756
KO:K09250 CTD:7555 GeneTree:ENSGT00510000047065 HOVERGEN:HBG000397
OMA:CPNGQGG EMBL:CR860791 RefSeq:NP_001126703.1 UniGene:Pab.18652
ProteinModelPortal:Q5R5R5 SMR:Q5R5R5 PRIDE:Q5R5R5
Ensembl:ENSPPYT00000015613 GeneID:100173703 KEGG:pon:100173703
InParanoid:Q5R5R5 Uniprot:Q5R5R5
Length = 177
Score = 259 (96.2 bits), Expect = 2.6e-22, P = 2.6e-22
Identities = 44/121 (36%), Positives = 66/121 (54%)
Query: 38 VCYKCNNYGHFARECATESVTCYNCSGQGHVAKDCTV---KSSIICYNCNSSGHFARNCP 94
+CY+C GH A++C + CYNC GH+AKDC + CYNC GH AR+C
Sbjct: 53 ICYRCGESGHLAKDCDLQEDACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCD 112
Query: 95 NDSSKRCYACHQAGHMAKECPG---QTAGKSPEPVVDMSLT----CYVCGHQGHLSYDCK 147
+ ++CY+C + GH+ K+C G++ ++ S T CY CG GHL+ +C
Sbjct: 113 HADEQKCYSCGEFGHIQKDCTKVKCYRCGETGHVAINCSKTSEVNCYRCGESGHLARECT 172
Query: 148 L 148
+
Sbjct: 173 I 173
Score = 201 (75.8 bits), Expect = 3.7e-16, P = 3.7e-16
Identities = 46/150 (30%), Positives = 66/150 (44%)
Query: 5 STIQCYNCFDFGHYQYSCPQKSSADARGDKV-GIVCYKCNNYGHFARECATESVTCYNCS 63
S+ +C+ C GH+ CP RG + G + + F + CY C
Sbjct: 2 SSNECFKCGRSGHWARECPT-GGGRGRGMRSRGRGGFTSDRGFQFVSSSLPD--ICYRCG 58
Query: 64 GQGHVAKDCTVKSSIICYNCNSSGHFARNCPNDSSKR---CYACHQAGHMAKECPGQTAG 120
GH+AKDC ++ CYNC GH A++C +R CY C + GH+A++C
Sbjct: 59 ESGHLAKDCDLQEDA-CYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQ 117
Query: 121 KSPEPVVDMSLTCYVCGHQGHLSYDCKLVQ 150
K CY CG GH+ DC V+
Sbjct: 118 K-----------CYSCGEFGHIQKDCTKVK 136
Score = 142 (55.0 bits), Expect = 6.6e-10, P = 6.6e-10
Identities = 25/71 (35%), Positives = 39/71 (54%)
Query: 8 QCYNCFDFGHYQYSCPQKSSADARGDKVGIVCYKCNNYGHFARECA-TESVTCYNCSGQG 66
+CY+C +FGH Q C + + CY+C GH A C+ T V CY C G
Sbjct: 118 KCYSCGEFGHIQKDCTK------------VKCYRCGETGHVAINCSKTSEVNCYRCGESG 165
Query: 67 HVAKDCTVKSS 77
H+A++CT++++
Sbjct: 166 HLARECTIEAT 176
>RGD|621807 [details] [associations]
symbol:Cnbp "CCHC-type zinc finger, nucleic acid binding protein"
species:10116 "Rattus norvegicus" [GO:0003697 "single-stranded DNA
binding" evidence=IDA] [GO:0003727 "single-stranded RNA binding"
evidence=IDA] [GO:0005634 "nucleus" evidence=ISO;ISS] [GO:0005783
"endoplasmic reticulum" evidence=ISO;ISS] [GO:0005829 "cytosol"
evidence=ISO;ISS] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0008284 "positive regulation of cell proliferation"
evidence=ISO;ISS] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=ISO;ISS] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=ISO;ISS] InterPro:IPR001878 Pfam:PF00098
PROSITE:PS50158 SMART:SM00343 RGD:621807 GO:GO:0005783
GO:GO:0005829 GO:GO:0005634 GO:GO:0046872 GO:GO:0008284
GO:GO:0008270 GO:GO:0003727 GO:GO:0045944 GO:GO:0006351
GO:GO:0003697 eggNOG:COG5082 Gene3D:4.10.60.10 SUPFAM:SSF57756
HOGENOM:HOG000186262 KO:K09250 CTD:7555 HOVERGEN:HBG000397
OrthoDB:EOG45HRZN EMBL:D45254 EMBL:AF242550 EMBL:AY329624
EMBL:AB158421 EMBL:AB158422 EMBL:BC062225 IPI:IPI00201505
PIR:JC2512 RefSeq:NP_072120.1 UniGene:Rn.6187
ProteinModelPortal:P62634 SMR:P62634 STRING:P62634
PhosphoSite:P62634 PRIDE:P62634 GeneID:64530 KEGG:rno:64530
InParanoid:P62634 NextBio:613366 ArrayExpress:P62634
Genevestigator:P62634 GermOnline:ENSRNOG00000010239 Uniprot:P62634
Length = 177
Score = 259 (96.2 bits), Expect = 2.6e-22, P = 2.6e-22
Identities = 44/121 (36%), Positives = 66/121 (54%)
Query: 38 VCYKCNNYGHFARECATESVTCYNCSGQGHVAKDCTV---KSSIICYNCNSSGHFARNCP 94
+CY+C GH A++C + CYNC GH+AKDC + CYNC GH AR+C
Sbjct: 53 ICYRCGESGHLAKDCDLQEDACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCD 112
Query: 95 NDSSKRCYACHQAGHMAKECPG---QTAGKSPEPVVDMSLT----CYVCGHQGHLSYDCK 147
+ ++CY+C + GH+ K+C G++ ++ S T CY CG GHL+ +C
Sbjct: 113 HADEQKCYSCGEFGHIQKDCTKVKCYRCGETGHVAINCSKTSEVNCYRCGESGHLARECT 172
Query: 148 L 148
+
Sbjct: 173 I 173
Score = 201 (75.8 bits), Expect = 3.7e-16, P = 3.7e-16
Identities = 46/150 (30%), Positives = 66/150 (44%)
Query: 5 STIQCYNCFDFGHYQYSCPQKSSADARGDKV-GIVCYKCNNYGHFARECATESVTCYNCS 63
S+ +C+ C GH+ CP RG + G + + F + CY C
Sbjct: 2 SSNECFKCGRSGHWARECPT-GGGRGRGMRSRGRGGFTSDRGFQFVSSSLPD--ICYRCG 58
Query: 64 GQGHVAKDCTVKSSIICYNCNSSGHFARNCPNDSSKR---CYACHQAGHMAKECPGQTAG 120
GH+AKDC ++ CYNC GH A++C +R CY C + GH+A++C
Sbjct: 59 ESGHLAKDCDLQEDA-CYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQ 117
Query: 121 KSPEPVVDMSLTCYVCGHQGHLSYDCKLVQ 150
K CY CG GH+ DC V+
Sbjct: 118 K-----------CYSCGEFGHIQKDCTKVK 136
Score = 142 (55.0 bits), Expect = 6.6e-10, P = 6.6e-10
Identities = 25/71 (35%), Positives = 39/71 (54%)
Query: 8 QCYNCFDFGHYQYSCPQKSSADARGDKVGIVCYKCNNYGHFARECA-TESVTCYNCSGQG 66
+CY+C +FGH Q C + + CY+C GH A C+ T V CY C G
Sbjct: 118 KCYSCGEFGHIQKDCTK------------VKCYRCGETGHVAINCSKTSEVNCYRCGESG 165
Query: 67 HVAKDCTVKSS 77
H+A++CT++++
Sbjct: 166 HLARECTIEAT 176
>UNIPROTKB|P62634 [details] [associations]
symbol:Cnbp "Cellular nucleic acid-binding protein"
species:10116 "Rattus norvegicus" [GO:0005634 "nucleus"
evidence=ISS] InterPro:IPR001878 Pfam:PF00098 PROSITE:PS50158
SMART:SM00343 RGD:621807 GO:GO:0005783 GO:GO:0005829 GO:GO:0005634
GO:GO:0046872 GO:GO:0008284 GO:GO:0008270 GO:GO:0003727
GO:GO:0045944 GO:GO:0006351 GO:GO:0003697 eggNOG:COG5082
Gene3D:4.10.60.10 SUPFAM:SSF57756 HOGENOM:HOG000186262 KO:K09250
CTD:7555 HOVERGEN:HBG000397 OrthoDB:EOG45HRZN EMBL:D45254
EMBL:AF242550 EMBL:AY329624 EMBL:AB158421 EMBL:AB158422
EMBL:BC062225 IPI:IPI00201505 PIR:JC2512 RefSeq:NP_072120.1
UniGene:Rn.6187 ProteinModelPortal:P62634 SMR:P62634 STRING:P62634
PhosphoSite:P62634 PRIDE:P62634 GeneID:64530 KEGG:rno:64530
InParanoid:P62634 NextBio:613366 ArrayExpress:P62634
Genevestigator:P62634 GermOnline:ENSRNOG00000010239 Uniprot:P62634
Length = 177
Score = 259 (96.2 bits), Expect = 2.6e-22, P = 2.6e-22
Identities = 44/121 (36%), Positives = 66/121 (54%)
Query: 38 VCYKCNNYGHFARECATESVTCYNCSGQGHVAKDCTV---KSSIICYNCNSSGHFARNCP 94
+CY+C GH A++C + CYNC GH+AKDC + CYNC GH AR+C
Sbjct: 53 ICYRCGESGHLAKDCDLQEDACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCD 112
Query: 95 NDSSKRCYACHQAGHMAKECPG---QTAGKSPEPVVDMSLT----CYVCGHQGHLSYDCK 147
+ ++CY+C + GH+ K+C G++ ++ S T CY CG GHL+ +C
Sbjct: 113 HADEQKCYSCGEFGHIQKDCTKVKCYRCGETGHVAINCSKTSEVNCYRCGESGHLARECT 172
Query: 148 L 148
+
Sbjct: 173 I 173
Score = 201 (75.8 bits), Expect = 3.7e-16, P = 3.7e-16
Identities = 46/150 (30%), Positives = 66/150 (44%)
Query: 5 STIQCYNCFDFGHYQYSCPQKSSADARGDKV-GIVCYKCNNYGHFARECATESVTCYNCS 63
S+ +C+ C GH+ CP RG + G + + F + CY C
Sbjct: 2 SSNECFKCGRSGHWARECPT-GGGRGRGMRSRGRGGFTSDRGFQFVSSSLPD--ICYRCG 58
Query: 64 GQGHVAKDCTVKSSIICYNCNSSGHFARNCPNDSSKR---CYACHQAGHMAKECPGQTAG 120
GH+AKDC ++ CYNC GH A++C +R CY C + GH+A++C
Sbjct: 59 ESGHLAKDCDLQEDA-CYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQ 117
Query: 121 KSPEPVVDMSLTCYVCGHQGHLSYDCKLVQ 150
K CY CG GH+ DC V+
Sbjct: 118 K-----------CYSCGEFGHIQKDCTKVK 136
Score = 142 (55.0 bits), Expect = 6.6e-10, P = 6.6e-10
Identities = 25/71 (35%), Positives = 39/71 (54%)
Query: 8 QCYNCFDFGHYQYSCPQKSSADARGDKVGIVCYKCNNYGHFARECA-TESVTCYNCSGQG 66
+CY+C +FGH Q C + + CY+C GH A C+ T V CY C G
Sbjct: 118 KCYSCGEFGHIQKDCTK------------VKCYRCGETGHVAINCSKTSEVNCYRCGESG 165
Query: 67 HVAKDCTVKSS 77
H+A++CT++++
Sbjct: 166 HLARECTIEAT 176
>MGI|MGI:88431 [details] [associations]
symbol:Cnbp "cellular nucleic acid binding protein"
species:10090 "Mus musculus" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0003697
"single-stranded DNA binding" evidence=ISO] [GO:0003727
"single-stranded RNA binding" evidence=ISO] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005783
"endoplasmic reticulum" evidence=IDA] [GO:0005829 "cytosol"
evidence=IDA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0008284 "positive regulation of cell
proliferation" evidence=IDA] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=IDA] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=IDA] [GO:0046872 "metal ion binding" evidence=IEA]
InterPro:IPR001878 Pfam:PF00098 PROSITE:PS50158 SMART:SM00343
MGI:MGI:88431 GO:GO:0005783 GO:GO:0005829 GO:GO:0005634
GO:GO:0046872 GO:GO:0008284 GO:GO:0008270 GO:GO:0003727
GO:GO:0045944 GO:GO:0006351 GO:GO:0003697 eggNOG:COG5082
Gene3D:4.10.60.10 SUPFAM:SSF57756 HOGENOM:HOG000186262 KO:K09250
CTD:7555 HOVERGEN:HBG000397 ChiTaRS:CNBP EMBL:L12693 EMBL:Z11870
EMBL:X63866 EMBL:Z11871 EMBL:U20326 EMBL:AY176064 EMBL:AK075760
EMBL:AK078427 EMBL:BC058723 IPI:IPI00137229 IPI:IPI00330767
IPI:IPI00454151 PIR:I48297 PIR:I48298 PIR:I49259
RefSeq:NP_001103215.1 RefSeq:NP_038521.1 UniGene:Mm.290251
ProteinModelPortal:P53996 SMR:P53996 IntAct:P53996 STRING:P53996
PhosphoSite:P53996 PaxDb:P53996 PRIDE:P53996
Ensembl:ENSMUST00000032138 Ensembl:ENSMUST00000113619 GeneID:12785
KEGG:mmu:12785 InParanoid:P53996 OMA:CPNGQGG NextBio:282182
Bgee:P53996 CleanEx:MM_CNBP Genevestigator:P53996
GermOnline:ENSMUSG00000030057 Uniprot:P53996
Length = 178
Score = 255 (94.8 bits), Expect = 7.0e-22, P = 7.0e-22
Identities = 45/122 (36%), Positives = 66/122 (54%)
Query: 38 VCYKCNNYGHFAREC-ATESVTCYNCSGQGHVAKDCTV---KSSIICYNCNSSGHFARNC 93
+CY+C GH A++C E CYNC GH+AKDC + CYNC GH AR+C
Sbjct: 53 ICYRCGESGHLAKDCDLQEDEACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDC 112
Query: 94 PNDSSKRCYACHQAGHMAKECPG---QTAGKSPEPVVDMSLT----CYVCGHQGHLSYDC 146
+ ++CY+C + GH+ K+C G++ ++ S T CY CG GHL+ +C
Sbjct: 113 DHADEQKCYSCGEFGHIQKDCTKVKCYRCGETGHVAINCSKTSEVNCYRCGESGHLAREC 172
Query: 147 KL 148
+
Sbjct: 173 TI 174
Score = 227 (85.0 bits), Expect = 6.5e-19, P = 6.5e-19
Identities = 41/107 (38%), Positives = 53/107 (49%)
Query: 9 CYNCFDFGHYQYSCPQKSSADARGDKVGIVCYKCNNYGHFARECA-TESVTCYNCSGQGH 67
CYNC GH C + + CY C GH AR+C + CY+C GH
Sbjct: 75 CYNCGRGGHIAKDCKEPKREREQ------CCYNCGKPGHLARDCDHADEQKCYSCGEFGH 128
Query: 68 VAKDCTVKSSIICYNCNSSGHFARNCPNDSSKRCYACHQAGHMAKEC 114
+ KDCT + CY C +GH A NC S CY C ++GH+A+EC
Sbjct: 129 IQKDCT---KVKCYRCGETGHVAINCSKTSEVNCYRCGESGHLAREC 172
Score = 207 (77.9 bits), Expect = 8.6e-17, P = 8.6e-17
Identities = 46/150 (30%), Positives = 66/150 (44%)
Query: 5 STIQCYNCFDFGHYQYSCPQKSSADARGDKV-GIVCYKCNNYGHFARECATESVTCYNCS 63
S+ +C+ C GH+ CP RG + G + + F + CY C
Sbjct: 2 SSNECFKCGRSGHWARECPT-GGGRGRGMRSRGRGGFTSDRGFQFVSSSLPD--ICYRCG 58
Query: 64 GQGHVAKDCTVKSSIICYNCNSSGHFARNCPNDSSKR---CYACHQAGHMAKECPGQTAG 120
GH+AKDC ++ CYNC GH A++C +R CY C + GH+A++C
Sbjct: 59 ESGHLAKDCDLQEDEACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQ 118
Query: 121 KSPEPVVDMSLTCYVCGHQGHLSYDCKLVQ 150
K CY CG GH+ DC V+
Sbjct: 119 K-----------CYSCGEFGHIQKDCTKVK 137
Score = 142 (55.0 bits), Expect = 6.6e-10, P = 6.6e-10
Identities = 25/71 (35%), Positives = 39/71 (54%)
Query: 8 QCYNCFDFGHYQYSCPQKSSADARGDKVGIVCYKCNNYGHFARECA-TESVTCYNCSGQG 66
+CY+C +FGH Q C + + CY+C GH A C+ T V CY C G
Sbjct: 119 KCYSCGEFGHIQKDCTK------------VKCYRCGETGHVAINCSKTSEVNCYRCGESG 166
Query: 67 HVAKDCTVKSS 77
H+A++CT++++
Sbjct: 167 HLARECTIEAT 177
>UNIPROTKB|O42395 [details] [associations]
symbol:CNBP "Cellular nucleic acid-binding protein"
species:9031 "Gallus gallus" [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0005783
"endoplasmic reticulum" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005829 "cytosol" evidence=IEA] [GO:0008284
"positive regulation of cell proliferation" evidence=IEA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] InterPro:IPR001878
Pfam:PF00098 PROSITE:PS50158 SMART:SM00343 GO:GO:0005783
GO:GO:0005829 GO:GO:0005634 GO:GO:0046872 GO:GO:0003677
GO:GO:0008284 GO:GO:0008270 GO:GO:0045944 GO:GO:0006351
eggNOG:COG5082 Gene3D:4.10.60.10 SUPFAM:SSF57756
HOGENOM:HOG000186262 KO:K09250 CTD:7555 HOVERGEN:HBG000397
OrthoDB:EOG45HRZN EMBL:AF004942 IPI:IPI00582111 RefSeq:NP_990238.1
UniGene:Gga.3333 ProteinModelPortal:O42395 STRING:O42395
GeneID:395731 KEGG:gga:395731 InParanoid:O42395 NextBio:20815799
ArrayExpress:O42395 Uniprot:O42395
Length = 172
Score = 255 (94.8 bits), Expect = 7.0e-22, P = 7.0e-22
Identities = 45/122 (36%), Positives = 66/122 (54%)
Query: 38 VCYKCNNYGHFAREC-ATESVTCYNCSGQGHVAKDCTV---KSSIICYNCNSSGHFARNC 93
+CY+C GH A++C E CYNC GH+AKDC + CYNC GH AR+C
Sbjct: 47 ICYRCGESGHLAKDCDLQEDKACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDC 106
Query: 94 PNDSSKRCYACHQAGHMAKECPG---QTAGKSPEPVVDMSLT----CYVCGHQGHLSYDC 146
+ ++CY+C + GH+ K+C G++ ++ S T CY CG GHL+ +C
Sbjct: 107 DHADEQKCYSCGEFGHIQKDCTKVKCYRCGETGHVAINCSKTSEVNCYRCGESGHLAREC 166
Query: 147 KL 148
+
Sbjct: 167 TI 168
Score = 227 (85.0 bits), Expect = 6.5e-19, P = 6.5e-19
Identities = 41/107 (38%), Positives = 53/107 (49%)
Query: 9 CYNCFDFGHYQYSCPQKSSADARGDKVGIVCYKCNNYGHFARECA-TESVTCYNCSGQGH 67
CYNC GH C + + CY C GH AR+C + CY+C GH
Sbjct: 69 CYNCGRGGHIAKDCKEPKREREQ------CCYNCGKPGHLARDCDHADEQKCYSCGEFGH 122
Query: 68 VAKDCTVKSSIICYNCNSSGHFARNCPNDSSKRCYACHQAGHMAKEC 114
+ KDCT + CY C +GH A NC S CY C ++GH+A+EC
Sbjct: 123 IQKDCT---KVKCYRCGETGHVAINCSKTSEVNCYRCGESGHLAREC 166
Score = 202 (76.2 bits), Expect = 2.9e-16, P = 2.9e-16
Identities = 46/149 (30%), Positives = 67/149 (44%)
Query: 5 STIQCYNCFDFGHYQYSCPQKSSADARGDKVGIVCYKCNNYGHFARECATESVTCYNCSG 64
S+ +C+ C GH+ CP + RG G+ + F ++ CY C
Sbjct: 2 SSNECFKCGRTGHWARECP---TGIGRGR--GM---RSRGRAGFQFMSSSLPDICYRCGE 53
Query: 65 QGHVAKDCTVKSSIICYNCNSSGHFARNCPNDSSKR---CYACHQAGHMAKECPGQTAGK 121
GH+AKDC ++ CYNC GH A++C +R CY C + GH+A++C K
Sbjct: 54 SGHLAKDCDLQEDKACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQK 113
Query: 122 SPEPVVDMSLTCYVCGHQGHLSYDCKLVQ 150
CY CG GH+ DC V+
Sbjct: 114 -----------CYSCGEFGHIQKDCTKVK 131
Score = 142 (55.0 bits), Expect = 6.6e-10, P = 6.6e-10
Identities = 25/71 (35%), Positives = 39/71 (54%)
Query: 8 QCYNCFDFGHYQYSCPQKSSADARGDKVGIVCYKCNNYGHFARECA-TESVTCYNCSGQG 66
+CY+C +FGH Q C + + CY+C GH A C+ T V CY C G
Sbjct: 113 KCYSCGEFGHIQKDCTK------------VKCYRCGETGHVAINCSKTSEVNCYRCGESG 160
Query: 67 HVAKDCTVKSS 77
H+A++CT++++
Sbjct: 161 HLARECTIEAT 171
>UNIPROTKB|E2RPD7 [details] [associations]
symbol:CNBP "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=IEA] [GO:0008284
"positive regulation of cell proliferation" evidence=IEA]
[GO:0005829 "cytosol" evidence=IEA] [GO:0005783 "endoplasmic
reticulum" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] InterPro:IPR001878 Pfam:PF00098
PROSITE:PS50158 SMART:SM00343 GO:GO:0005783 GO:GO:0005829
GO:GO:0005634 GO:GO:0046872 GO:GO:0008284 GO:GO:0008270
GO:GO:0045944 GO:GO:0003676 Gene3D:4.10.60.10 SUPFAM:SSF57756
GeneTree:ENSGT00510000047065 OMA:CPNGQGG EMBL:AAEX03012021
UniGene:Cfa.4499 ProteinModelPortal:E2RPD7 PRIDE:E2RPD7
Ensembl:ENSCAFT00000006937 NextBio:20852160 Uniprot:E2RPD7
Length = 179
Score = 252 (93.8 bits), Expect = 1.5e-21, P = 1.5e-21
Identities = 46/123 (37%), Positives = 67/123 (54%)
Query: 38 VCYKCNNYGHFAREC-ATESV-TCYNCSGQGHVAKDCTV---KSSIICYNCNSSGHFARN 92
+CY+C GH A++C E V CYNC GH+AKDC + CYNC GH AR+
Sbjct: 53 ICYRCGESGHLAKDCDLQEDVEACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARD 112
Query: 93 CPNDSSKRCYACHQAGHMAKECPG---QTAGKSPEPVVDMSLT----CYVCGHQGHLSYD 145
C + ++CY+C + GH+ K+C G++ ++ S T CY CG GHL+ +
Sbjct: 113 CDHADEQKCYSCGEFGHIQKDCTKVKCYRCGETGHVAINCSKTSEVNCYRCGESGHLARE 172
Query: 146 CKL 148
C +
Sbjct: 173 CTI 175
Score = 204 (76.9 bits), Expect = 1.8e-16, P = 1.8e-16
Identities = 46/151 (30%), Positives = 67/151 (44%)
Query: 5 STIQCYNCFDFGHYQYSCPQKSSADARGDKV-GIVCYKCNNYGHFARECATESVTCYNCS 63
S+ +C+ C GH+ CP RG + G + + F + CY C
Sbjct: 2 SSNECFKCGRSGHWARECPT-GGGRGRGMRSRGRGGFTSDRGFQFVSSSLPD--ICYRCG 58
Query: 64 GQGHVAKDCTVKSSI-ICYNCNSSGHFARNCPNDSSKR---CYACHQAGHMAKECPGQTA 119
GH+AKDC ++ + CYNC GH A++C +R CY C + GH+A++C
Sbjct: 59 ESGHLAKDCDLQEDVEACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADE 118
Query: 120 GKSPEPVVDMSLTCYVCGHQGHLSYDCKLVQ 150
K CY CG GH+ DC V+
Sbjct: 119 QK-----------CYSCGEFGHIQKDCTKVK 138
Score = 195 (73.7 bits), Expect = 1.6e-15, P = 1.6e-15
Identities = 38/118 (32%), Positives = 54/118 (45%)
Query: 1 MSSTSTIQCYNCFDFGHYQYSCPQKSSADARGDKVGIVCYKCNNYGHFARECAT----ES 56
+SS+ CY C + GH C + +A CY C GH A++C
Sbjct: 46 VSSSLPDICYRCGESGHLAKDCDLQEDVEA--------CYNCGRGGHIAKDCKEPKRERE 97
Query: 57 VTCYNCSGQGHVAKDCTVKSSIICYNCNSSGHFARNCPNDSSKRCYACHQAGHMAKEC 114
CYNC GH+A+DC CY+C GH ++C + +CY C + GH+A C
Sbjct: 98 QCCYNCGKPGHLARDCDHADEQKCYSCGEFGHIQKDC---TKVKCYRCGETGHVAINC 152
Score = 142 (55.0 bits), Expect = 6.6e-10, P = 6.6e-10
Identities = 25/71 (35%), Positives = 39/71 (54%)
Query: 8 QCYNCFDFGHYQYSCPQKSSADARGDKVGIVCYKCNNYGHFARECA-TESVTCYNCSGQG 66
+CY+C +FGH Q C + + CY+C GH A C+ T V CY C G
Sbjct: 120 KCYSCGEFGHIQKDCTK------------VKCYRCGETGHVAINCSKTSEVNCYRCGESG 167
Query: 67 HVAKDCTVKSS 77
H+A++CT++++
Sbjct: 168 HLARECTIEAT 178
>UNIPROTKB|F8WFK2 [details] [associations]
symbol:Cnbp "Cellular nucleic acid-binding protein"
species:10116 "Rattus norvegicus" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005783 "endoplasmic reticulum" evidence=IEA] [GO:0005829
"cytosol" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0008284 "positive regulation of cell
proliferation" evidence=IEA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
InterPro:IPR001878 Pfam:PF00098 PROSITE:PS50158 SMART:SM00343
RGD:621807 GO:GO:0046872 GO:GO:0008270 GO:GO:0003676
Gene3D:4.10.60.10 SUPFAM:SSF57756 GeneTree:ENSGT00510000047065
IPI:IPI00201505 ProteinModelPortal:F8WFK2 SMR:F8WFK2
Ensembl:ENSRNOT00000013884 Uniprot:F8WFK2
Length = 179
Score = 252 (93.8 bits), Expect = 1.5e-21, P = 1.5e-21
Identities = 46/123 (37%), Positives = 67/123 (54%)
Query: 38 VCYKCNNYGHFAREC-ATESV-TCYNCSGQGHVAKDCTV---KSSIICYNCNSSGHFARN 92
+CY+C GH A++C E V CYNC GH+AKDC + CYNC GH AR+
Sbjct: 53 ICYRCGESGHLAKDCDLQEDVEACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARD 112
Query: 93 CPNDSSKRCYACHQAGHMAKECPG---QTAGKSPEPVVDMSLT----CYVCGHQGHLSYD 145
C + ++CY+C + GH+ K+C G++ ++ S T CY CG GHL+ +
Sbjct: 113 CDHADEQKCYSCGEFGHIQKDCTKVKCYRCGETGHVAINCSKTSEVNCYRCGESGHLARE 172
Query: 146 CKL 148
C +
Sbjct: 173 CTI 175
Score = 204 (76.9 bits), Expect = 1.8e-16, P = 1.8e-16
Identities = 46/151 (30%), Positives = 67/151 (44%)
Query: 5 STIQCYNCFDFGHYQYSCPQKSSADARGDKV-GIVCYKCNNYGHFARECATESVTCYNCS 63
S+ +C+ C GH+ CP RG + G + + F + CY C
Sbjct: 2 SSNECFKCGRSGHWARECPT-GGGRGRGMRSRGRGGFTSDRGFQFVSSSLPD--ICYRCG 58
Query: 64 GQGHVAKDCTVKSSI-ICYNCNSSGHFARNCPNDSSKR---CYACHQAGHMAKECPGQTA 119
GH+AKDC ++ + CYNC GH A++C +R CY C + GH+A++C
Sbjct: 59 ESGHLAKDCDLQEDVEACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADE 118
Query: 120 GKSPEPVVDMSLTCYVCGHQGHLSYDCKLVQ 150
K CY CG GH+ DC V+
Sbjct: 119 QK-----------CYSCGEFGHIQKDCTKVK 138
Score = 195 (73.7 bits), Expect = 1.6e-15, P = 1.6e-15
Identities = 38/118 (32%), Positives = 54/118 (45%)
Query: 1 MSSTSTIQCYNCFDFGHYQYSCPQKSSADARGDKVGIVCYKCNNYGHFARECAT----ES 56
+SS+ CY C + GH C + +A CY C GH A++C
Sbjct: 46 VSSSLPDICYRCGESGHLAKDCDLQEDVEA--------CYNCGRGGHIAKDCKEPKRERE 97
Query: 57 VTCYNCSGQGHVAKDCTVKSSIICYNCNSSGHFARNCPNDSSKRCYACHQAGHMAKEC 114
CYNC GH+A+DC CY+C GH ++C + +CY C + GH+A C
Sbjct: 98 QCCYNCGKPGHLARDCDHADEQKCYSCGEFGHIQKDC---TKVKCYRCGETGHVAINC 152
Score = 142 (55.0 bits), Expect = 6.6e-10, P = 6.6e-10
Identities = 25/71 (35%), Positives = 39/71 (54%)
Query: 8 QCYNCFDFGHYQYSCPQKSSADARGDKVGIVCYKCNNYGHFARECA-TESVTCYNCSGQG 66
+CY+C +FGH Q C + + CY+C GH A C+ T V CY C G
Sbjct: 120 KCYSCGEFGHIQKDCTK------------VKCYRCGETGHVAINCSKTSEVNCYRCGESG 167
Query: 67 HVAKDCTVKSS 77
H+A++CT++++
Sbjct: 168 HLARECTIEAT 178
>DICTYBASE|DDB_G0293328 [details] [associations]
symbol:DDB_G0293328 "Cellular nucleic acid-binding
protein" species:44689 "Dictyostelium discoideum" [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0044351 "macropinocytosis" evidence=RCA] InterPro:IPR001878
Pfam:PF00098 PROSITE:PS50158 SMART:SM00343 dictyBase:DDB_G0293328
GO:GO:0046872 GO:GO:0008270 GO:GO:0003676 eggNOG:COG5082
Gene3D:4.10.60.10 SUPFAM:SSF57756 EMBL:AAFI02000201
RefSeq:XP_629203.1 ProteinModelPortal:Q54BY8 STRING:Q54BY8
EnsemblProtists:DDB0191881 GeneID:8629162 KEGG:ddi:DDB_G0293328
InParanoid:Q54BY8 OMA:CKEVGHI ProtClustDB:PTZ00368 Uniprot:Q54BY8
Length = 131
Score = 251 (93.4 bits), Expect = 1.9e-21, P = 1.9e-21
Identities = 49/131 (37%), Positives = 67/131 (51%)
Query: 1 MSSTSTIQCYNCFDFGHYQYSCPQKSSADARGDKVGIVCYKCNNYGHFARECAT------ 54
MS CY C + GH +CP+ A GD+ CY CN GH +REC
Sbjct: 1 MSEIKEKSCYKCKEVGHISRNCPKNPEA---GDRA---CYVCNVVGHLSRECPQNPQPTF 54
Query: 55 ---ESVTCYNCSGQGHVAKDCTVKSSIICYNCNSSGHFARNCPNDSSK-------RCYAC 104
+ + CY C+G GH A+DC CYNC GH +++CP+ S++ +CY C
Sbjct: 55 EKKDPIKCYQCNGFGHFARDCRRGRDNKCYNCGGLGHISKDCPSPSTRGQGRDAAKCYKC 114
Query: 105 HQAGHMAKECP 115
+Q GH+AK CP
Sbjct: 115 NQPGHIAKACP 125
Score = 215 (80.7 bits), Expect = 1.2e-17, P = 1.2e-17
Identities = 42/121 (34%), Positives = 58/121 (47%)
Query: 39 CYKCNNYGHFARECATESVT----CYNCSGQGHVAKDCTV--------KSSIICYNCNSS 86
CYKC GH +R C CY C+ GH++++C K I CY CN
Sbjct: 9 CYKCKEVGHISRNCPKNPEAGDRACYVCNVVGHLSRECPQNPQPTFEKKDPIKCYQCNGF 68
Query: 87 GHFARNCPNDSSKRCYACHQAGHMAKECPG-QTAGKSPEPVVDMSLTCYVCGHQGHLSYD 145
GHFAR+C +CY C GH++K+CP T G+ + + CY C GH++
Sbjct: 69 GHFARDCRRGRDNKCYNCGGLGHISKDCPSPSTRGQGRD-----AAKCYKCNQPGHIAKA 123
Query: 146 C 146
C
Sbjct: 124 C 124
Score = 213 (80.0 bits), Expect = 2.0e-17, P = 2.0e-17
Identities = 41/99 (41%), Positives = 50/99 (50%)
Query: 9 CYNCFDFGHYQYSCPQKSSADARGDKVGIVCYKCNNYGHFARECAT-ESVTCYNCSGQGH 67
CY C GH CPQ K I CY+CN +GHFAR+C CYNC G GH
Sbjct: 33 CYVCNVVGHLSRECPQNPQPTFE-KKDPIKCYQCNGFGHFARDCRRGRDNKCYNCGGLGH 91
Query: 68 VAKDCTVKSS-------IICYNCNSSGHFARNCPNDSSK 99
++KDC S+ CY CN GH A+ CP + S+
Sbjct: 92 ISKDCPSPSTRGQGRDAAKCYKCNQPGHIAKACPENQSE 130
Score = 157 (60.3 bits), Expect = 1.7e-11, P = 1.7e-11
Identities = 26/73 (35%), Positives = 40/73 (54%)
Query: 80 CYNCNSSGHFARNCPND---SSKRCYACHQAGHMAKECPGQTAGKSPEPVVDMS--LTCY 134
CY C GH +RNCP + + CY C+ GH+++ECP ++P+P + + CY
Sbjct: 9 CYKCKEVGHISRNCPKNPEAGDRACYVCNVVGHLSRECP-----QNPQPTFEKKDPIKCY 63
Query: 135 VCGHQGHLSYDCK 147
C GH + DC+
Sbjct: 64 QCNGFGHFARDCR 76
>ASPGD|ASPL0000028407 [details] [associations]
symbol:AN5111 species:162425 "Emericella nidulans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0005829 "cytosol" evidence=IEA] [GO:0000747 "conjugation with
cellular fusion" evidence=IEA] [GO:0031137 "regulation of
conjugation with cellular fusion" evidence=IEA] InterPro:IPR001878
Pfam:PF00098 PROSITE:PS50158 SMART:SM00343 GO:GO:0046872
GO:GO:0008270 GO:GO:0003676 EMBL:BN001305 Gene3D:4.10.60.10
SUPFAM:SSF57756 OMA:FQFMSSS EnsemblFungi:CADANIAT00003095
Uniprot:C8VEX3
Length = 171
Score = 249 (92.7 bits), Expect = 3.0e-21, P = 3.0e-21
Identities = 50/127 (39%), Positives = 65/127 (51%)
Query: 36 GIVCYKCNNYGHFARECATESV-TCYNCSGQGHVAKDCTVK-SSIICYNCNSSGHFARNC 93
G VC+ C H AR+C + TCYNC GQGHV+++CTV CY C + GH +R C
Sbjct: 5 GRVCFNCGEATHQARDCPKKGTPTCYNCGGQGHVSRECTVAPKEKSCYRCGAVGHISREC 64
Query: 94 P----ND---SSKRCYACHQAGHMAKECP--GQTAGKSPEPVVDMSLTCYVCGHQGHLSY 144
P N+ + CY C + GH+A+ C G G TCY CG GH++
Sbjct: 65 PQAGENERPAGGQECYKCGRVGHIARNCSQGGSYGGGFGGGYGGRQQTCYSCGGFGHMAR 124
Query: 145 DCKLVQK 151
DC QK
Sbjct: 125 DCTQGQK 131
Score = 235 (87.8 bits), Expect = 9.2e-20, P = 9.2e-20
Identities = 47/123 (38%), Positives = 59/123 (47%)
Query: 9 CYNCFDFGHYQYSCPQKSSADARGDKVGIVCYKCNNYGHFARECAT-------------- 54
CY C GH CPQ + G CYKC GH AR C+
Sbjct: 51 CYRCGAVGHISRECPQAGENERPAG--GQECYKCGRVGHIARNCSQGGSYGGGFGGGYGG 108
Query: 55 ESVTCYNCSGQGHVAKDCTVKSSIICYNCNSSGHFARNCPNDSS-KR-CYACHQAGHMAK 112
TCY+C G GH+A+DCT CYNC +GH +R+CP ++ +R CY C Q GH+
Sbjct: 109 RQQTCYSCGGFGHMARDCTQGQK--CYNCGETGHVSRDCPTEAKGERVCYQCKQPGHIQS 166
Query: 113 ECP 115
CP
Sbjct: 167 ACP 169
Score = 210 (79.0 bits), Expect = 4.1e-17, P = 4.1e-17
Identities = 51/160 (31%), Positives = 68/160 (42%)
Query: 9 CYNCFDFGHYQYSCPQKSSADARGDKVGIVCYKCNNYGHFAREC--ATESVTCYNCSGQG 66
C+NC + H CP+K + CY C GH +REC A + +CY C G
Sbjct: 8 CFNCGEATHQARDCPKKGTP---------TCYNCGGQGHVSRECTVAPKEKSCYRCGAVG 58
Query: 67 HVAKDCTVKSSII-------CYNCNSSGHFARNCPNDSS-------------KRCYACHQ 106
H++++C CY C GH ARNC S + CY+C
Sbjct: 59 HISRECPQAGENERPAGGQECYKCGRVGHIARNCSQGGSYGGGFGGGYGGRQQTCYSCGG 118
Query: 107 AGHMAKECPGQTAGKSPEPVVDMSLTCYVCGHQGHLSYDC 146
GHMA++C T G+ CY CG GH+S DC
Sbjct: 119 FGHMARDC---TQGQK----------CYNCGETGHVSRDC 145
Score = 198 (74.8 bits), Expect = 7.7e-16, P = 7.7e-16
Identities = 50/162 (30%), Positives = 70/162 (43%)
Query: 6 TIQCYNCFDFGHYQYSCPQKSSADARGDKVGIVCYKCNNYGHFAREC--ATESVT----- 58
T CYNC GH C A +K CY+C GH +REC A E+
Sbjct: 26 TPTCYNCGGQGHVSRECTV-----APKEKS---CYRCGAVGHISRECPQAGENERPAGGQ 77
Query: 59 -CYNCSGQGHVAKDCTVKSSI-------------ICYNCNSSGHFARNCPNDSSKRCYAC 104
CY C GH+A++C+ S CY+C GH AR+C ++CY C
Sbjct: 78 ECYKCGRVGHIARNCSQGGSYGGGFGGGYGGRQQTCYSCGGFGHMARDCTQ--GQKCYNC 135
Query: 105 HQAGHMAKECPGQTAGKSPEPVVDMSLTCYVCGHQGHLSYDC 146
+ GH++++CP + G+ CY C GH+ C
Sbjct: 136 GETGHVSRDCPTEAKGER---------VCYQCKQPGHIQSAC 168
Score = 197 (74.4 bits), Expect = 9.8e-16, P = 9.8e-16
Identities = 37/95 (38%), Positives = 46/95 (48%)
Query: 8 QCYNCFDFGHYQYSCPQKSS-ADARGDKVG---IVCYKCNNYGHFARECATESVTCYNCS 63
+CY C GH +C Q S G G CY C +GH AR+C T+ CYNC
Sbjct: 78 ECYKCGRVGHIARNCSQGGSYGGGFGGGYGGRQQTCYSCGGFGHMARDC-TQGQKCYNCG 136
Query: 64 GQGHVAKDCTV--KSSIICYNCNSSGHFARNCPND 96
GHV++DC K +CY C GH CPN+
Sbjct: 137 ETGHVSRDCPTEAKGERVCYQCKQPGHIQSACPNN 171
>CGD|CAL0002417 [details] [associations]
symbol:GIS2 species:5476 "Candida albicans" [GO:0070417
"cellular response to cold" evidence=IMP] [GO:0003676 "nucleic acid
binding" evidence=NAS] [GO:0071470 "cellular response to osmotic
stress" evidence=IMP] [GO:0035690 "cellular response to drug"
evidence=IMP] [GO:0042788 "polysomal ribosome" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] [GO:0000747 "conjugation with cellular fusion"
evidence=IEA] [GO:0031137 "regulation of conjugation with cellular
fusion" evidence=IEA] [GO:0045727 "positive regulation of
translation" evidence=IEA] [GO:0003729 "mRNA binding" evidence=IEA]
[GO:0003697 "single-stranded DNA binding" evidence=IEA] [GO:0045182
"translation regulator activity" evidence=IEA] InterPro:IPR001878
Pfam:PF00098 PROSITE:PS50158 SMART:SM00343 CGD:CAL0002417
GO:GO:0046872 GO:GO:0008270 GO:GO:0003676 GO:GO:0035690
EMBL:AACQ01000100 EMBL:AACQ01000097 GO:GO:0071470 GO:GO:0070417
eggNOG:COG5082 Gene3D:4.10.60.10 SUPFAM:SSF57756
HOGENOM:HOG000186262 KO:K09250 RefSeq:XP_714599.1
RefSeq:XP_714730.1 ProteinModelPortal:Q59YJ9 STRING:Q59YJ9
GeneID:3643638 GeneID:3643744 KEGG:cal:CaO19.10692
KEGG:cal:CaO19.3182 Uniprot:Q59YJ9
Length = 175
Score = 245 (91.3 bits), Expect = 8.0e-21, P = 8.0e-21
Identities = 53/157 (33%), Positives = 72/157 (45%)
Query: 9 CYNCFDFGHYQYSCPQKSSADARGDKVGIVCYKCNNYGHFARECATES--VTCYNCSGQG 66
CYNC GH CP A+ CY C + GH EC ++ CYNC G
Sbjct: 29 CYNCHKPGHESNDCPDPKQNTAKQ------CYSCGDVGHIQTECPNQAQGAKCYNCGQFG 82
Query: 67 HVAKDC-----------TVK------SSIICYNCNSSGHFARNCPNDSSKRCYACHQAGH 109
H++K+C + K S CY C HFAR+C ++ K CYAC + GH
Sbjct: 83 HISKNCDSAPSSTNNAPSFKRPSGRASGTTCYKCGGPNHFARDCQANTVK-CYACGKVGH 141
Query: 110 MAKECPGQTAGKSPEPVVDMSLTCYVCGHQGHLSYDC 146
++K+C G + + TCY CG GH+S +C
Sbjct: 142 ISKDCHSSAGGSNFS-----AKTCYNCGKSGHISKEC 173
Score = 229 (85.7 bits), Expect = 4.0e-19, P = 4.0e-19
Identities = 47/119 (39%), Positives = 57/119 (47%)
Query: 39 CYKCNNYGHFARECATESVTCYNCSGQGHVAKDCT-VKSSII--CYNCNSSGHFARNCPN 95
CYKC GH A +C E CYNC GH + DC K + CY+C GH CPN
Sbjct: 9 CYKCGEVGHVADDCQQEERLCYNCHKPGHESNDCPDPKQNTAKQCYSCGDVGHIQTECPN 68
Query: 96 DSS-KRCYACHQAGHMAKEC---PGQT--AGKSPEPVVDMS-LTCYVCGHQGHLSYDCK 147
+ +CY C Q GH++K C P T A P S TCY CG H + DC+
Sbjct: 69 QAQGAKCYNCGQFGHISKNCDSAPSSTNNAPSFKRPSGRASGTTCYKCGGPNHFARDCQ 127
Score = 202 (76.2 bits), Expect = 2.9e-16, P = 2.9e-16
Identities = 37/92 (40%), Positives = 51/92 (55%)
Query: 58 TCYNCSGQGHVAKDCTVKSSIICYNCNSSGHFARNCPN---DSSKRCYACHQAGHMAKEC 114
TCY C GHVA DC + + CYNC+ GH + +CP+ +++K+CY+C GH+ EC
Sbjct: 8 TCYKCGEVGHVADDCQQEERL-CYNCHKPGHESNDCPDPKQNTAKQCYSCGDVGHIQTEC 66
Query: 115 PGQTAGKSPEPVVDMSLTCYVCGHQGHLSYDC 146
P Q G CY CG GH+S +C
Sbjct: 67 PNQAQGAK----------CYNCGQFGHISKNC 88
Score = 173 (66.0 bits), Expect = 3.4e-13, P = 3.4e-13
Identities = 43/149 (28%), Positives = 62/149 (41%)
Query: 9 CYNCFDFGHYQYSCPQKSSADARGDKVGIVCYKCNNYGHFARECA----TESVTCYNCSG 64
CY C + GH C Q+ +CY C+ GH + +C + CY+C
Sbjct: 9 CYKCGEVGHVADDCQQEER----------LCYNCHKPGHESNDCPDPKQNTAKQCYSCGD 58
Query: 65 QGHVAKDCTVKSS-IICYNCNSSGHFARNCPNDSSKRCYACHQAGHMAKECPGQTAGKSP 123
GH+ +C ++ CYNC GH ++NC + S A + G T K
Sbjct: 59 VGHIQTECPNQAQGAKCYNCGQFGHISKNCDSAPSSTNNA-PSFKRPSGRASGTTCYKCG 117
Query: 124 EP---VVDM---SLTCYVCGHQGHLSYDC 146
P D ++ CY CG GH+S DC
Sbjct: 118 GPNHFARDCQANTVKCYACGKVGHISKDC 146
Score = 108 (43.1 bits), Expect = 1.1e-05, P = 1.1e-05
Identities = 21/63 (33%), Positives = 32/63 (50%)
Query: 20 YSC--PQKSSADARGDKVGIVCYKCNNYGHFARECATES-------VTCYNCSGQGHVAK 70
Y C P + D + + V CY C GH +++C + + TCYNC GH++K
Sbjct: 114 YKCGGPNHFARDCQANTVK--CYACGKVGHISKDCHSSAGGSNFSAKTCYNCGKSGHISK 171
Query: 71 DCT 73
+CT
Sbjct: 172 ECT 174
>UNIPROTKB|Q59YJ9 [details] [associations]
symbol:GIS2 "Putative uncharacterized protein GIS2"
species:237561 "Candida albicans SC5314" [GO:0003676 "nucleic acid
binding" evidence=NAS] [GO:0035690 "cellular response to drug"
evidence=IMP] [GO:0070417 "cellular response to cold" evidence=IMP]
[GO:0071470 "cellular response to osmotic stress" evidence=IMP]
InterPro:IPR001878 Pfam:PF00098 PROSITE:PS50158 SMART:SM00343
CGD:CAL0002417 GO:GO:0046872 GO:GO:0008270 GO:GO:0003676
GO:GO:0035690 EMBL:AACQ01000100 EMBL:AACQ01000097 GO:GO:0071470
GO:GO:0070417 eggNOG:COG5082 Gene3D:4.10.60.10 SUPFAM:SSF57756
HOGENOM:HOG000186262 KO:K09250 RefSeq:XP_714599.1
RefSeq:XP_714730.1 ProteinModelPortal:Q59YJ9 STRING:Q59YJ9
GeneID:3643638 GeneID:3643744 KEGG:cal:CaO19.10692
KEGG:cal:CaO19.3182 Uniprot:Q59YJ9
Length = 175
Score = 245 (91.3 bits), Expect = 8.0e-21, P = 8.0e-21
Identities = 53/157 (33%), Positives = 72/157 (45%)
Query: 9 CYNCFDFGHYQYSCPQKSSADARGDKVGIVCYKCNNYGHFARECATES--VTCYNCSGQG 66
CYNC GH CP A+ CY C + GH EC ++ CYNC G
Sbjct: 29 CYNCHKPGHESNDCPDPKQNTAKQ------CYSCGDVGHIQTECPNQAQGAKCYNCGQFG 82
Query: 67 HVAKDC-----------TVK------SSIICYNCNSSGHFARNCPNDSSKRCYACHQAGH 109
H++K+C + K S CY C HFAR+C ++ K CYAC + GH
Sbjct: 83 HISKNCDSAPSSTNNAPSFKRPSGRASGTTCYKCGGPNHFARDCQANTVK-CYACGKVGH 141
Query: 110 MAKECPGQTAGKSPEPVVDMSLTCYVCGHQGHLSYDC 146
++K+C G + + TCY CG GH+S +C
Sbjct: 142 ISKDCHSSAGGSNFS-----AKTCYNCGKSGHISKEC 173
Score = 229 (85.7 bits), Expect = 4.0e-19, P = 4.0e-19
Identities = 47/119 (39%), Positives = 57/119 (47%)
Query: 39 CYKCNNYGHFARECATESVTCYNCSGQGHVAKDCT-VKSSII--CYNCNSSGHFARNCPN 95
CYKC GH A +C E CYNC GH + DC K + CY+C GH CPN
Sbjct: 9 CYKCGEVGHVADDCQQEERLCYNCHKPGHESNDCPDPKQNTAKQCYSCGDVGHIQTECPN 68
Query: 96 DSS-KRCYACHQAGHMAKEC---PGQT--AGKSPEPVVDMS-LTCYVCGHQGHLSYDCK 147
+ +CY C Q GH++K C P T A P S TCY CG H + DC+
Sbjct: 69 QAQGAKCYNCGQFGHISKNCDSAPSSTNNAPSFKRPSGRASGTTCYKCGGPNHFARDCQ 127
Score = 202 (76.2 bits), Expect = 2.9e-16, P = 2.9e-16
Identities = 37/92 (40%), Positives = 51/92 (55%)
Query: 58 TCYNCSGQGHVAKDCTVKSSIICYNCNSSGHFARNCPN---DSSKRCYACHQAGHMAKEC 114
TCY C GHVA DC + + CYNC+ GH + +CP+ +++K+CY+C GH+ EC
Sbjct: 8 TCYKCGEVGHVADDCQQEERL-CYNCHKPGHESNDCPDPKQNTAKQCYSCGDVGHIQTEC 66
Query: 115 PGQTAGKSPEPVVDMSLTCYVCGHQGHLSYDC 146
P Q G CY CG GH+S +C
Sbjct: 67 PNQAQGAK----------CYNCGQFGHISKNC 88
Score = 173 (66.0 bits), Expect = 3.4e-13, P = 3.4e-13
Identities = 43/149 (28%), Positives = 62/149 (41%)
Query: 9 CYNCFDFGHYQYSCPQKSSADARGDKVGIVCYKCNNYGHFARECA----TESVTCYNCSG 64
CY C + GH C Q+ +CY C+ GH + +C + CY+C
Sbjct: 9 CYKCGEVGHVADDCQQEER----------LCYNCHKPGHESNDCPDPKQNTAKQCYSCGD 58
Query: 65 QGHVAKDCTVKSS-IICYNCNSSGHFARNCPNDSSKRCYACHQAGHMAKECPGQTAGKSP 123
GH+ +C ++ CYNC GH ++NC + S A + G T K
Sbjct: 59 VGHIQTECPNQAQGAKCYNCGQFGHISKNCDSAPSSTNNA-PSFKRPSGRASGTTCYKCG 117
Query: 124 EP---VVDM---SLTCYVCGHQGHLSYDC 146
P D ++ CY CG GH+S DC
Sbjct: 118 GPNHFARDCQANTVKCYACGKVGHISKDC 146
Score = 108 (43.1 bits), Expect = 1.1e-05, P = 1.1e-05
Identities = 21/63 (33%), Positives = 32/63 (50%)
Query: 20 YSC--PQKSSADARGDKVGIVCYKCNNYGHFARECATES-------VTCYNCSGQGHVAK 70
Y C P + D + + V CY C GH +++C + + TCYNC GH++K
Sbjct: 114 YKCGGPNHFARDCQANTVK--CYACGKVGHISKDCHSSAGGSNFSAKTCYNCGKSGHISK 171
Query: 71 DCT 73
+CT
Sbjct: 172 ECT 174
>UNIPROTKB|J9NRQ2 [details] [associations]
symbol:ZCCHC13 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR001878 Pfam:PF00098 PROSITE:PS50158 SMART:SM00343
GO:GO:0046872 GO:GO:0008270 GO:GO:0003676 Gene3D:4.10.60.10
SUPFAM:SSF57756 GeneTree:ENSGT00510000047065 EMBL:AAEX03026520
Ensembl:ENSCAFT00000049751 OMA:EEQKCYS Uniprot:J9NRQ2
Length = 146
Score = 245 (91.3 bits), Expect = 8.0e-21, P = 8.0e-21
Identities = 48/157 (30%), Positives = 72/157 (45%)
Query: 5 STIQCYNCFDFGHYQYSCPQKSSADARGDK------------VGIVCYKCNNYGHFAREC 52
S+ +C+ C GH+ CP+ + RG + + +CY+C GH A+ C
Sbjct: 2 SSKECFRCGRSGHWARGCPRVGGSRGRGARGRGRGSPCSSTNLPDICYRCGKSGHHAKNC 61
Query: 53 ATESVTCYNCSGQGHVAKDCTV---KSSIICYNCNSSGHFARNCPNDSSKRCYACHQAGH 109
CYNC GH+AKDC + CY C GH AR+C ++CY+C + GH
Sbjct: 62 DLLEDICYNCGRSGHIAKDCIEPKREREQCCYTCGRPGHLARDCDRQEEQKCYSCGEYGH 121
Query: 110 MAKECPGQTAGKSPEPVVDMSLTCYVCGHQGHLSYDC 146
+ K+C + CY CG GH++ +C
Sbjct: 122 IQKDCT--------------QVKCYRCGETGHVAINC 144
Score = 187 (70.9 bits), Expect = 1.1e-14, P = 1.1e-14
Identities = 37/95 (38%), Positives = 48/95 (50%)
Query: 59 CYNCSGQGHVAKDCTVKSSIICYNCNSSGHFARNCPNDSSKR---CYACHQAGHMAKECP 115
CY C GH AK+C + I CYNC SGH A++C +R CY C + GH+A++C
Sbjct: 48 CYRCGKSGHHAKNCDLLEDI-CYNCGRSGHIAKDCIEPKREREQCCYTCGRPGHLARDCD 106
Query: 116 GQTAGKSPEPVVDMSLTCYVCGHQGHLSYDCKLVQ 150
Q K CY CG GH+ DC V+
Sbjct: 107 RQEEQK-----------CYSCGEYGHIQKDCTQVK 130
Score = 111 (44.1 bits), Expect = 1.3e-06, P = 1.3e-06
Identities = 22/65 (33%), Positives = 28/65 (43%)
Query: 9 CYNCFDFGHYQYSCPQKSSADARGDKVGIVCYKCNNYGHFARECATESVTCYNCSGQGHV 68
CY C GH C ++ CY C YGH ++C V CY C GHV
Sbjct: 92 CYTCGRPGHLARDCDRQEEQK---------CYSCGEYGHIQKDCT--QVKCYRCGETGHV 140
Query: 69 AKDCT 73
A +C+
Sbjct: 141 AINCS 145
Score = 98 (39.6 bits), Expect = 0.00023, P = 0.00023
Identities = 22/64 (34%), Positives = 34/64 (53%)
Query: 97 SSKRCYACHQAGHMAKECP--GQTAGK--------SPEPVVDMSLTCYVCGHQGHLSYDC 146
SSK C+ C ++GH A+ CP G + G+ SP ++ CY CG GH + +C
Sbjct: 2 SSKECFRCGRSGHWARGCPRVGGSRGRGARGRGRGSPCSSTNLPDICYRCGKSGHHAKNC 61
Query: 147 KLVQ 150
L++
Sbjct: 62 DLLE 65
>TAIR|locus:2135139 [details] [associations]
symbol:CSDP1 "cold shock domain protein 1" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA;ISS] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0009409 "response
to cold" evidence=IGI;IEP] [GO:0003690 "double-stranded DNA
binding" evidence=IDA] [GO:0003697 "single-stranded DNA binding"
evidence=IDA] [GO:0003723 "RNA binding" evidence=IDA] [GO:0009414
"response to water deprivation" evidence=IEP] [GO:0009651 "response
to salt stress" evidence=IEP] [GO:0010501 "RNA secondary structure
unwinding" evidence=IDA] [GO:0032508 "DNA duplex unwinding"
evidence=IDA] [GO:0009631 "cold acclimation" evidence=IGI]
[GO:0009165 "nucleotide biosynthetic process" evidence=RCA]
InterPro:IPR001878 InterPro:IPR002059 InterPro:IPR011129
Pfam:PF00098 Pfam:PF00313 PRINTS:PR00050 PROSITE:PS50158
SMART:SM00343 SMART:SM00357 Prosite:PS00352 GO:GO:0005634
GO:GO:0005737 EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0006355
GO:GO:0046872 GO:GO:0009651 GO:GO:0009414 GO:GO:0008270
GO:GO:0009631 GO:GO:0003723 EMBL:AL161588 GO:GO:0003690
GO:GO:0003697 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
Gene3D:4.10.60.10 SUPFAM:SSF57756 EMBL:AL022373
HOGENOM:HOG000186262 KO:K09250 InterPro:IPR019844 GO:GO:0010501
EMBL:AK226815 IPI:IPI00525206 PIR:T05494 RefSeq:NP_195326.1
UniGene:At.23073 HSSP:P15277 ProteinModelPortal:O65639 SMR:O65639
STRING:O65639 PaxDb:O65639 PRIDE:O65639 EnsemblPlants:AT4G36020.1
GeneID:829758 KEGG:ath:AT4G36020 TAIR:At4g36020 eggNOG:COG1278
InParanoid:O65639 OMA:GRACYNC PhylomeDB:O65639
ProtClustDB:CLSN2685328 Genevestigator:O65639 GO:GO:0032508
Uniprot:O65639
Length = 299
Score = 244 (91.0 bits), Expect = 1.0e-20, P = 1.0e-20
Identities = 54/130 (41%), Positives = 64/130 (49%)
Query: 9 CYNCFDFGHYQYSCPQKS--SADARGDKVG--IVCYKCNNYGHFARECATE--------- 55
CY C D GH C QKS + D RG G CY C + GHFAR+C +
Sbjct: 166 CYTCGDVGHVARDCTQKSVGNGDQRGAVKGGNDGCYTCGDVGHFARDCTQKVAAGNVRSG 225
Query: 56 ---SVTCYNCSGQGHVAKDCTVKS--SIICYNCNSSGHFARNCPNDSS------KRCYAC 104
S TCY+C G GH+A+DC K S CY C SGH AR+C S CY C
Sbjct: 226 GGGSGTCYSCGGVGHIARDCATKRQPSRGCYQCGGSGHLARDCDQRGSGGGGNDNACYKC 285
Query: 105 HQAGHMAKEC 114
+ GH A+EC
Sbjct: 286 GKEGHFAREC 295
Score = 217 (81.4 bits), Expect = 7.5e-18, P = 7.5e-18
Identities = 55/152 (36%), Positives = 68/152 (44%)
Query: 9 CYNCFDFGHYQYSCPQKSSADA--RGDKVGIVCYKCNNYGHFAREC----------ATES 56
CYNC + GH C R + G CY C + GHFAR+C AT+
Sbjct: 102 CYNCGELGHISKDCGIGGGGGGGERRSRGGEGCYNCGDTGHFARDCTSAGNGDQRGATKG 161
Query: 57 VT--CYNCSGQGHVAKDCTVKSSIICYNCNSSGHFARNCPNDSSKRCYACHQAGHMAKEC 114
CY C GHVA+DCT KS N + G A ND CY C GH A++C
Sbjct: 162 GNDGCYTCGDVGHVARDCTQKS---VGNGDQRG--AVKGGNDG---CYTCGDVGHFARDC 213
Query: 115 PGQTAGKSPEPVVDMSLTCYVCGHQGHLSYDC 146
+ A + S TCY CG GH++ DC
Sbjct: 214 TQKVAAGNVRSGGGGSGTCYSCGGVGHIARDC 245
Score = 213 (80.0 bits), Expect = 2.0e-17, P = 2.0e-17
Identities = 54/151 (35%), Positives = 68/151 (45%)
Query: 9 CYNCFDFGHYQYSCPQKSSADARGDKVG--IVCYKCNNYGHFARECATESVTCYNCSGQG 66
CYNC D GH+ C + D RG G CY C + GH AR+C +SV G G
Sbjct: 134 CYNCGDTGHFARDCTSAGNGDQRGATKGGNDGCYTCGDVGHVARDCTQKSV------GNG 187
Query: 67 HVAKDCTVKSSIICYNCNSSGHFARNCPND-----------SSKRCYACHQAGHMAKECP 115
+ + CY C GHFAR+C S CY+C GH+A++C
Sbjct: 188 D-QRGAVKGGNDGCYTCGDVGHFARDCTQKVAAGNVRSGGGGSGTCYSCGGVGHIARDC- 245
Query: 116 GQTAGKSPEPVVDMSLTCYVCGHQGHLSYDC 146
A K +P S CY CG GHL+ DC
Sbjct: 246 ---ATKR-QP----SRGCYQCGGSGHLARDC 268
Score = 162 (62.1 bits), Expect = 1.2e-11, P = 1.2e-11
Identities = 39/130 (30%), Positives = 57/130 (43%)
Query: 30 ARGDKVGIVCYKCNNYGHFARECATESVTCYNCSGQGHVAKDCTVKSSIICYNCNSSGHF 89
AR G CY C GH +++C G G + + CYNC +GHF
Sbjct: 93 ARRGGGGSGCYNCGELGHISKDCGI---------GGGGGGGERRSRGGEGCYNCGDTGHF 143
Query: 90 ARNCPN--DSSKR---------CYACHQAGHMAKECPGQTAGKSPE--PVVDMSLTCYVC 136
AR+C + + +R CY C GH+A++C ++ G + V + CY C
Sbjct: 144 ARDCTSAGNGDQRGATKGGNDGCYTCGDVGHVARDCTQKSVGNGDQRGAVKGGNDGCYTC 203
Query: 137 GHQGHLSYDC 146
G GH + DC
Sbjct: 204 GDVGHFARDC 213
Score = 113 (44.8 bits), Expect = 3.4e-06, P = 3.4e-06
Identities = 24/72 (33%), Positives = 32/72 (44%)
Query: 9 CYNCFDFGHYQYSCPQKSSADARGDKVGIVCYKCNNYGHFARECATESV-------TCYN 61
CY+C GH C K +RG CY+C GH AR+C CY
Sbjct: 232 CYSCGGVGHIARDCATKRQP-SRG------CYQCGGSGHLARDCDQRGSGGGGNDNACYK 284
Query: 62 CSGQGHVAKDCT 73
C +GH A++C+
Sbjct: 285 CGKEGHFARECS 296
Score = 111 (44.1 bits), Expect = 5.7e-06, P = 5.7e-06
Identities = 20/46 (43%), Positives = 23/46 (50%)
Query: 9 CYNCFDFGHYQYSCPQKSSADARGDKVGIVCYKCNNYGHFARECAT 54
CY C GH C Q+ S D CYKC GHFAREC++
Sbjct: 255 CYQCGGSGHLARDCDQRGSGGGGNDNA---CYKCGKEGHFARECSS 297
>POMBASE|SPAC13D6.02c [details] [associations]
symbol:byr3 "zinc finger protein Byr3" species:4896
"Schizosaccharomyces pombe" [GO:0000747 "conjugation with cellular
fusion" evidence=IMP] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IDA] [GO:0005829 "cytosol"
evidence=IDA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0031137 "regulation of conjugation with cellular fusion"
evidence=IGI] InterPro:IPR001878 Pfam:PF00098 PROSITE:PS50158
SMART:SM00343 PomBase:SPAC13D6.02c GO:GO:0005829 EMBL:CU329670
GO:GO:0005730 GenomeReviews:CU329670_GR GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 eggNOG:COG5082 Gene3D:4.10.60.10 SUPFAM:SSF57756
GO:GO:0000747 EMBL:S45038 PIR:T37622 RefSeq:NP_593680.1
ProteinModelPortal:P36627 STRING:P36627 PRIDE:P36627
EnsemblFungi:SPAC13D6.02c.1 GeneID:2542829 KEGG:spo:SPAC13D6.02c
HOGENOM:HOG000186262 KO:K09250 OMA:FQFMSSS OrthoDB:EOG4K0TXR
NextBio:20803871 GO:GO:0031137 Uniprot:P36627
Length = 179
Score = 243 (90.6 bits), Expect = 1.3e-20, P = 1.3e-20
Identities = 46/117 (39%), Positives = 64/117 (54%)
Query: 39 CYKCNNYGHFARECATESVTCYNCSGQGHVAKDCTV-KSSIICYNCNSSGHFARNCPNDS 97
CY C GH AREC S+ CYNC+ GH A +CT + CY C ++GH R+CP+
Sbjct: 19 CYNCGENGHQARECTKGSI-CYNCNQTGHKASECTEPQQEKTCYACGTAGHLVRDCPSSP 77
Query: 98 SKR----CYACHQAGHMAKECP--GQTAGKSPEPVVDMSLTCYVCGHQGHLSYDCKL 148
+ R CY C + GH+A++C GQ +G ++ CY CG GH + DC +
Sbjct: 78 NPRQGAECYKCGRVGHIARDCRTNGQQSG-GRFGGHRSNMNCYACGSYGHQARDCTM 133
Score = 218 (81.8 bits), Expect = 5.8e-18, P = 5.8e-18
Identities = 51/158 (32%), Positives = 68/158 (43%)
Query: 8 QCYNCFDFGHYQYSCPQKSSADARGDKVGIVCYKCNNYGHFARECAT--ESVTCYNCSGQ 65
+CYNC + GH C + G +CY CN GH A EC + TCY C
Sbjct: 18 RCYNCGENGHQARECTK-----------GSICYNCNQTGHKASECTEPQQEKTCYACGTA 66
Query: 66 GHVAKDC----TVKSSIICYNCNSSGHFARNCPND------------SSKRCYACHQAGH 109
GH+ +DC + CY C GH AR+C + S+ CYAC GH
Sbjct: 67 GHLVRDCPSSPNPRQGAECYKCGRVGHIARDCRTNGQQSGGRFGGHRSNMNCYACGSYGH 126
Query: 110 MAKECPGQTAGKSPEPVVDMSLTCYVCGHQGHLSYDCK 147
A++C M + CY CG GH S++C+
Sbjct: 127 QARDCT-------------MGVKCYSCGKIGHRSFECQ 151
Score = 205 (77.2 bits), Expect = 1.4e-16, P = 1.4e-16
Identities = 45/120 (37%), Positives = 57/120 (47%)
Query: 9 CYNCFDFGHYQYSCPQKSSADARGDKVGIVCYKCNNYGHFARECATE------------- 55
CY C GH CP SS + R G CYKC GH AR+C T
Sbjct: 60 CYACGTAGHLVRDCP--SSPNPRQ---GAECYKCGRVGHIARDCRTNGQQSGGRFGGHRS 114
Query: 56 SVTCYNCSGQGHVAKDCTVKSSIICYNCNSSGHFARNCPNDSSKR-CYACHQAGHMAKEC 114
++ CY C GH A+DCT+ + CY+C GH + C S + CY C+Q GH+A C
Sbjct: 115 NMNCYACGSYGHQARDCTM--GVKCYSCGKIGHRSFECQQASDGQLCYKCNQPGHIAVNC 172
Score = 122 (48.0 bits), Expect = 8.7e-08, P = 8.7e-08
Identities = 24/71 (33%), Positives = 34/71 (47%)
Query: 5 STIQCYNCFDFGHYQYSCPQKSSADARGDKVGIVCYKCNNYGHFAREC--ATESVTCYNC 62
S + CY C +GH C +G+ CY C GH + EC A++ CY C
Sbjct: 114 SNMNCYACGSYGHQARDCT-----------MGVKCYSCGKIGHRSFECQQASDGQLCYKC 162
Query: 63 SGQGHVAKDCT 73
+ GH+A +CT
Sbjct: 163 NQPGHIAVNCT 173
Score = 98 (39.6 bits), Expect = 0.00080, P = 0.00080
Identities = 19/51 (37%), Positives = 25/51 (49%)
Query: 4 TSTIQCYNCFDFGHYQYSCPQKSSADARGDKVGIVCYKCNNYGHFARECAT 54
T ++CY+C GH + C Q S G +CYKCN GH A C +
Sbjct: 132 TMGVKCYSCGKIGHRSFECQQASD--------GQLCYKCNQPGHIAVNCTS 174
>SGD|S000005199 [details] [associations]
symbol:GIS2 "Translational activator for mRNAs with internal
ribosome entry sites" species:4932 "Saccharomyces cerevisiae"
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA;IDA] [GO:0000932 "cytoplasmic mRNA
processing body" evidence=IDA] [GO:0003729 "mRNA binding"
evidence=IDA] [GO:0010494 "cytoplasmic stress granule"
evidence=IDA] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0042788 "polysomal ribosome" evidence=IPI] [GO:0045182
"translation regulator activity" evidence=IDA] [GO:0045727
"positive regulation of translation" evidence=IDA] [GO:0003697
"single-stranded DNA binding" evidence=IDA] [GO:0003676 "nucleic
acid binding" evidence=IEA] InterPro:IPR001878 Pfam:PF00098
PROSITE:PS50158 SMART:SM00343 SGD:S000005199 GO:GO:0046872
GO:GO:0008270 GO:GO:0003729 EMBL:BK006947 GO:GO:0045182
GO:GO:0042788 GO:GO:0003697 eggNOG:COG5082 Gene3D:4.10.60.10
SUPFAM:SSF57756 GO:GO:0045727 EMBL:X96722 HOGENOM:HOG000186262
KO:K09250 GeneTree:ENSGT00510000047065 EMBL:Z71531 EMBL:AY558002
PIR:S63228 RefSeq:NP_014144.1 ProteinModelPortal:P53849 SMR:P53849
DIP:DIP-2669N IntAct:P53849 MINT:MINT-2732013 STRING:P53849
PaxDb:P53849 PeptideAtlas:P53849 EnsemblFungi:YNL255C GeneID:855466
KEGG:sce:YNL255C CYGD:YNL255c OMA:QCYNCGE OrthoDB:EOG4SJ8Q6
NextBio:979403 Genevestigator:P53849 GermOnline:YNL255C
Uniprot:P53849
Length = 153
Score = 239 (89.2 bits), Expect = 3.5e-20, P = 3.5e-20
Identities = 55/149 (36%), Positives = 67/149 (44%)
Query: 9 CYNCFDFGHYQYSCPQKSSADARGDKVGIVCYKCNNYGHFARECA----TESVTCYNCSG 64
CY C GH C + +CY CN GH +C E CYNC
Sbjct: 6 CYVCGKIGHLAEDCDSER-----------LCYNCNKPGHVQTDCTMPRTVEFKQCYNCGE 54
Query: 65 QGHVAKDCTVKSSIICYNCNSSGHFARNCPNDS-----SK-RCYACHQAGHMAKECPGQT 118
GHV +CTV+ C+NCN +GH +R CP SK CY C HMAK+C +
Sbjct: 55 TGHVRSECTVQR---CFNCNQTGHISRECPEPKKTSRFSKVSCYKCGGPNHMAKDCMKED 111
Query: 119 AGKSPEPVVDMSLTCYVCGHQGHLSYDCK 147
G S L CY CG GH+S DC+
Sbjct: 112 -GIS-------GLKCYTCGQAGHMSRDCQ 132
Score = 233 (87.1 bits), Expect = 1.5e-19, P = 1.5e-19
Identities = 44/118 (37%), Positives = 62/118 (52%)
Query: 8 QCYNCFDFGHYQYSCPQKSSADARGDKVGIVCYKCNNYGHFARECAT-------ESVTCY 60
QCYNC + GH + C + C+ CN GH +REC V+CY
Sbjct: 48 QCYNCGETGHVRSECTVQR------------CFNCNQTGHISRECPEPKKTSRFSKVSCY 95
Query: 61 NCSGQGHVAKDCTVK---SSIICYNCNSSGHFARNCPNDSSKRCYACHQAGHMAKECP 115
C G H+AKDC + S + CY C +GH +R+C ND + CY C++ GH++K+CP
Sbjct: 96 KCGGPNHMAKDCMKEDGISGLKCYTCGQAGHMSRDCQND--RLCYNCNETGHISKDCP 151
Score = 227 (85.0 bits), Expect = 6.5e-19, P = 6.5e-19
Identities = 47/147 (31%), Positives = 67/147 (45%)
Query: 9 CYNCFDFGHYQYSCPQKSSADARGDKVGIVCYKCNNYGHFARECATESVTCYNCSGQGHV 68
CYNC GH Q C + + + CY C GH EC + C+NC+ GH+
Sbjct: 25 CYNCNKPGHVQTDCTMPRTVEFKQ------CYNCGETGHVRSECTVQR--CFNCNQTGHI 76
Query: 69 AKDC-----TVK-SSIICYNCNSSGHFARNCPND---SSKRCYACHQAGHMAKECPGQTA 119
+++C T + S + CY C H A++C + S +CY C QAGHM+++C
Sbjct: 77 SRECPEPKKTSRFSKVSCYKCGGPNHMAKDCMKEDGISGLKCYTCGQAGHMSRDCQNDRL 136
Query: 120 GKSPEPVVDMSLTCYVCGHQGHLSYDC 146
CY C GH+S DC
Sbjct: 137 -------------CYNCNETGHISKDC 150
Score = 205 (77.2 bits), Expect = 1.4e-16, P = 1.4e-16
Identities = 37/97 (38%), Positives = 54/97 (55%)
Query: 3 STSTIQ-CYNCFDFGHYQYSCPQKSSADARGDKVGIVCYKCNNYGHFARECATES----V 57
S T+Q C+NC GH CP+ +R KV CYKC H A++C E +
Sbjct: 60 SECTVQRCFNCNQTGHISRECPEPKKT-SRFSKVS--CYKCGGPNHMAKDCMKEDGISGL 116
Query: 58 TCYNCSGQGHVAKDCTVKSSIICYNCNSSGHFARNCP 94
CY C GH+++DC ++ +CYNCN +GH +++CP
Sbjct: 117 KCYTCGQAGHMSRDC--QNDRLCYNCNETGHISKDCP 151
Score = 153 (58.9 bits), Expect = 4.5e-11, P = 4.5e-11
Identities = 34/97 (35%), Positives = 46/97 (47%)
Query: 59 CYNCSGQGHVAKDCTVKSSIICYNCNSSGHFARNC--PNDSS-KRCYACHQAGHMAKECP 115
CY C GH+A+DC S +CYNCN GH +C P K+CY C + GH+ EC
Sbjct: 6 CYVCGKIGHLAEDCD--SERLCYNCNKPGHVQTDCTMPRTVEFKQCYNCGETGHVRSECT 63
Query: 116 GQTAGKSPEPVVDMSLTCYVCGHQGHLSYDCKLVQKS 152
Q C+ C GH+S +C +K+
Sbjct: 64 VQR--------------CFNCNQTGHISRECPEPKKT 86
Score = 135 (52.6 bits), Expect = 3.6e-09, P = 3.6e-09
Identities = 24/71 (33%), Positives = 35/71 (49%)
Query: 2 SSTSTIQCYNCFDFGHYQYSCPQKSSADARGDKVGIVCYKCNNYGHFARECATESVTCYN 61
S S + CY C H C ++ G+ CY C GH +R+C + + CYN
Sbjct: 87 SRFSKVSCYKCGGPNHMAKDCMKEDGIS------GLKCYTCGQAGHMSRDCQNDRL-CYN 139
Query: 62 CSGQGHVAKDC 72
C+ GH++KDC
Sbjct: 140 CNETGHISKDC 150
>UNIPROTKB|F1NI84 [details] [associations]
symbol:CNBP "Cellular nucleic acid-binding protein"
species:9031 "Gallus gallus" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005783 "endoplasmic
reticulum" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
[GO:0008284 "positive regulation of cell proliferation"
evidence=IEA] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=IEA] InterPro:IPR001878
Pfam:PF00098 PROSITE:PS50158 SMART:SM00343 GO:GO:0005783
GO:GO:0005829 GO:GO:0005634 GO:GO:0046872 GO:GO:0008284
GO:GO:0008270 GO:GO:0045944 GO:GO:0003676 Gene3D:4.10.60.10
SUPFAM:SSF57756 GeneTree:ENSGT00510000047065 EMBL:AADN02013931
IPI:IPI00819060 Ensembl:ENSGALT00000008010 ArrayExpress:F1NI84
Uniprot:F1NI84
Length = 105
Score = 237 (88.5 bits), Expect = 5.7e-20, P = 5.7e-20
Identities = 40/112 (35%), Positives = 59/112 (52%)
Query: 38 VCYKCNNYGHFARECATESVTCYNCSGQGHVAKDCTV---KSSIICYNCNSSGHFARNCP 94
+CY+C GH A++C + CYNC GH+AKDC + CYNC GH AR+C
Sbjct: 8 ICYRCGESGHLAKDCDLQEDACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCD 67
Query: 95 NDSSKRCYACHQAGHMAKECPGQTAGKSPEPVVDMSLTCYVCGHQGHLSYDC 146
+ ++CY+C + GH+ K+C + CY CG GH++ +C
Sbjct: 68 HADEQKCYSCGEFGHIQKDCT--------------KVKCYRCGETGHVAINC 105
Score = 194 (73.4 bits), Expect = 2.0e-15, P = 2.0e-15
Identities = 40/118 (33%), Positives = 54/118 (45%)
Query: 1 MSSTSTIQCYNCFDFGHYQYSCPQKSSADARGDKVGIVCYKCNNYGHFARECAT----ES 56
MSS+ CY C + GH C D + D CY C GH A++C
Sbjct: 1 MSSSLPDICYRCGESGHLAKDC------DLQED----ACYNCGRGGHIAKDCKEPKRERE 50
Query: 57 VTCYNCSGQGHVAKDCTVKSSIICYNCNSSGHFARNCPNDSSKRCYACHQAGHMAKEC 114
CYNC GH+A+DC CY+C GH ++C + +CY C + GH+A C
Sbjct: 51 QCCYNCGKPGHLARDCDHADEQKCYSCGEFGHIQKDC---TKVKCYRCGETGHVAINC 105
Score = 182 (69.1 bits), Expect = 3.8e-14, P = 3.8e-14
Identities = 35/95 (36%), Positives = 47/95 (49%)
Query: 59 CYNCSGQGHVAKDCTVKSSIICYNCNSSGHFARNCPNDSSKR---CYACHQAGHMAKECP 115
CY C GH+AKDC ++ CYNC GH A++C +R CY C + GH+A++C
Sbjct: 9 CYRCGESGHLAKDCDLQEDA-CYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCD 67
Query: 116 GQTAGKSPEPVVDMSLTCYVCGHQGHLSYDCKLVQ 150
K CY CG GH+ DC V+
Sbjct: 68 HADEQK-----------CYSCGEFGHIQKDCTKVK 91
>TAIR|locus:2005719 [details] [associations]
symbol:AT1G75560 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA;ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0006457 "protein folding" evidence=RCA] [GO:0009408 "response
to heat" evidence=RCA] [GO:0009644 "response to high light
intensity" evidence=RCA] [GO:0034976 "response to endoplasmic
reticulum stress" evidence=RCA] [GO:0042542 "response to hydrogen
peroxide" evidence=RCA] InterPro:IPR001878 Pfam:PF00098
PROSITE:PS50158 SMART:SM00343 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
eggNOG:COG5082 Gene3D:4.10.60.10 SUPFAM:SSF57756 EMBL:BT005709
EMBL:AK118306 EMBL:AK175193 EMBL:AK175269 EMBL:AK175304
EMBL:AK175841 EMBL:AK176208 EMBL:AK176516 EMBL:AK176616
EMBL:AK176626 IPI:IPI00543969 RefSeq:NP_001077828.1
RefSeq:NP_565112.1 UniGene:At.34758 ProteinModelPortal:Q8GXC5
SMR:Q8GXC5 PaxDb:Q8GXC5 PRIDE:Q8GXC5 EnsemblPlants:AT1G75560.1
EnsemblPlants:AT1G75560.2 GeneID:843892 KEGG:ath:AT1G75560
TAIR:At1g75560 InParanoid:Q8GXC5 OMA:NEGICHS PhylomeDB:Q8GXC5
ProtClustDB:CLSN2689214 ArrayExpress:Q8GXC5 Genevestigator:Q8GXC5
Uniprot:Q8GXC5
Length = 257
Score = 232 (86.7 bits), Expect = 1.9e-19, P = 1.9e-19
Identities = 48/128 (37%), Positives = 67/128 (52%)
Query: 20 YSCPQKSSADAR-GDKVGIVCYKCNNYGHFARECATESVTCYNCSGQGHVAKDCTVKSSI 78
+ P + + R G +C C GHFAR+C+ SV C NC GH+A +CT +S
Sbjct: 37 HDAPSRREREPRRAFSQGNLCNNCKRPGHFARDCSNVSV-CNNCGLPGHIAAECTAESR- 94
Query: 79 ICYNCNSSGHFARNCPNDSSKRCYACHQAGHMAKECPGQTAGKSPEPVVDMSLTCYVCGH 138
C+NC GH A NC N+ C++C ++GH A++C S D+ L C C
Sbjct: 95 -CWNCREPGHVASNCSNEGI--CHSCGKSGHRARDC-----SNSDSRAGDLRL-CNNCFK 145
Query: 139 QGHLSYDC 146
QGHL+ DC
Sbjct: 146 QGHLAADC 153
Score = 203 (76.5 bits), Expect = 2.3e-16, P = 2.3e-16
Identities = 49/149 (32%), Positives = 67/149 (44%)
Query: 9 CYNCFDFGHYQYSCPQKSSADARGDKVGIVCYKCNNYGHFARECATESVTCYNCSGQGHV 68
C NC GH+ C S VC C GH A EC ES C+NC GHV
Sbjct: 57 CNNCKRPGHFARDCSNVS-----------VCNNCGLPGHIAAECTAES-RCWNCREPGHV 104
Query: 69 AKDCTVKSSIICYNCNSSGHFARNCPNDSSKR-----CYACHQAGHMAKECPGQTAGKSP 123
A +C+ + IC++C SGH AR+C N S+ C C + GH+A +C A K+
Sbjct: 105 ASNCSNEG--ICHSCGKSGHRARDCSNSDSRAGDLRLCNNCFKQGHLAADCTNDKACKNC 162
Query: 124 EPVVDMSL------TCYVCGHQGHLSYDC 146
++ C +C GH++ C
Sbjct: 163 RTSGHIARDCRNDPVCNICSISGHVARHC 191
Score = 202 (76.2 bits), Expect = 2.9e-16, P = 2.9e-16
Identities = 46/142 (32%), Positives = 69/142 (48%)
Query: 9 CYNCFDFGHYQYSCPQKSSADARGDKVGIVCYKCNNYGHFARECATESVTCYNCSGQGHV 68
C++C GH C S++D+R + + C C GH A +C T C NC GH+
Sbjct: 114 CHSCGKSGHRARDC---SNSDSRAGDLRL-CNNCFKQGHLAADC-TNDKACKNCRTSGHI 168
Query: 69 AKDCTVKSSIICYNCNSSGHFARNCPNDSSKRCYACHQAGHMAKECPGQTAGKS----PE 124
A+DC ++ +C C+ SGH AR+CP S Y+ G ++ Q G S
Sbjct: 169 ARDC--RNDPVCNICSISGHVARHCPKGDSN--YS--DRGSRVRDGGMQRGGLSRMSRDR 222
Query: 125 PVVDMSLTCYVCGHQGHLSYDC 146
V + C+ CG +GH +Y+C
Sbjct: 223 EGVSAMIICHNCGGRGHRAYEC 244
Score = 199 (75.1 bits), Expect = 6.0e-16, P = 6.0e-16
Identities = 42/118 (35%), Positives = 59/118 (50%)
Query: 4 TSTIQCYNCFDFGHYQYSCPQKSSADARGDKVGIVCYKCNNYGHFARECATESVT----- 58
T+ +C+NC + GH +C + +C+ C GH AR+C+
Sbjct: 90 TAESRCWNCREPGHVASNCSNEG-----------ICHSCGKSGHRARDCSNSDSRAGDLR 138
Query: 59 -CYNCSGQGHVAKDCTVKSSIICYNCNSSGHFARNCPNDSSKRCYACHQAGHMAKECP 115
C NC QGH+A DCT + C NC +SGH AR+C ND C C +GH+A+ CP
Sbjct: 139 LCNNCFKQGHLAADCTNDKA--CKNCRTSGHIARDCRNDPV--CNICSISGHVARHCP 192
Score = 117 (46.2 bits), Expect = 8.7e-07, P = 8.7e-07
Identities = 40/120 (33%), Positives = 48/120 (40%)
Query: 9 CYNCFDFGHYQYSCPQKSSADARGDKVGIVCYKCNNYGHFARECATESVTCYNCSGQGHV 68
C NCF GH +AD DK C C GH AR+C + V C CS GHV
Sbjct: 140 CNNCFKQGHL--------AADCTNDKA---CKNCRTSGHIARDCRNDPV-CNICSISGHV 187
Query: 69 AKDCTVKSSIICYNCNSS----GHFARNCPNDSSKR---------CYACHQAGHMAKECP 115
A+ C S Y+ S G R + S+ C+ C GH A ECP
Sbjct: 188 ARHCPKGDSN--YSDRGSRVRDGGMQRGGLSRMSRDREGVSAMIICHNCGGRGHRAYECP 245
>ASPGD|ASPL0000040986 [details] [associations]
symbol:AN9093 species:162425 "Emericella nidulans"
[GO:0045727 "positive regulation of translation" evidence=IEA]
[GO:0003697 "single-stranded DNA binding" evidence=IEA] [GO:0003729
"mRNA binding" evidence=IEA] [GO:0045182 "translation regulator
activity" evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0042788 "polysomal ribosome" evidence=IEA]
[GO:0000932 "cytoplasmic mRNA processing body" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] InterPro:IPR001878
Pfam:PF00098 PROSITE:PS50158 SMART:SM00343 GO:GO:0046872
GO:GO:0008270 EMBL:BN001306 GO:GO:0003676 Gene3D:4.10.60.10
SUPFAM:SSF57756 HOGENOM:HOG000186262 EnsemblFungi:CADANIAT00009521
OMA:QAGHISR Uniprot:C8VH53
Length = 233
Score = 224 (83.9 bits), Expect = 1.4e-18, P = 1.4e-18
Identities = 50/151 (33%), Positives = 64/151 (42%)
Query: 3 STSTIQCYNCFDFGHYQYSCPQKSSADARGDKVGIVCYKCNNYGHFARECATESVTCYNC 62
+T T QCYNC GH Q CP A G CY C+ GH AR C +
Sbjct: 46 TTETKQCYNCQGLGHVQADCPTLRLNGANGR-----CYNCSQPGHLARNCPAPASGAPRG 100
Query: 63 SGQ-------GHVAKDCTVKSSIICYNCNSSGHFARNCPNDSSKRCYACHQAGHMAKECP 115
+G G + CY C HFAR+C + K CYAC + GH++++C
Sbjct: 101 TGAPRGGFGGGFRGGYGGYPRAATCYKCGGPNHFARDCQAQAMK-CYACGKLGHISRDCT 159
Query: 116 GQTAGKSPEPVVDMSLTCYVCGHQGHLSYDC 146
G P+ CY C GH+S DC
Sbjct: 160 APNGG----PLSSAGKVCYKCSQAGHISRDC 186
Score = 213 (80.0 bits), Expect = 2.0e-17, P = 2.0e-17
Identities = 36/89 (40%), Positives = 47/89 (52%)
Query: 39 CYKCNNYGHFARECATESVTCYNCSGQGHVAKDCT---VKSSIICYNCNSSGHFARNCP- 94
CYKC N GH+A C++ CYNC GH + C + CYNC GH +CP
Sbjct: 8 CYKCGNIGHYAEVCSSSERLCYNCKQPGHESSSCPRPRTTETKQCYNCQGLGHVQADCPT 67
Query: 95 ---NDSSKRCYACHQAGHMAKECPGQTAG 120
N ++ RCY C Q GH+A+ CP +G
Sbjct: 68 LRLNGANGRCYNCSQPGHLARNCPAPASG 96
Score = 205 (77.2 bits), Expect = 1.4e-16, P = 1.4e-16
Identities = 44/122 (36%), Positives = 61/122 (50%)
Query: 8 QCYNCFDFGHYQYSCPQKSSADARGD---KVGIVCYKCNNYGHFARECATESVTCYNCSG 64
+CYNC GH +CP +S RG + G YG + R + TCY C G
Sbjct: 76 RCYNCSQPGHLARNCPAPASGAPRGTGAPRGGFGGGFRGGYGGYPR-----AATCYKCGG 130
Query: 65 QGHVAKDCTVKSSIICYNCNSSGHFARNC--PN-----DSSKRCYACHQAGHMAKECPGQ 117
H A+DC ++ + CY C GH +R+C PN + K CY C QAGH++++CP
Sbjct: 131 PNHFARDCQAQA-MKCYACGKLGHISRDCTAPNGGPLSSAGKVCYKCSQAGHISRDCPNN 189
Query: 118 TA 119
A
Sbjct: 190 EA 191
Score = 180 (68.4 bits), Expect = 6.2e-14, P = 6.2e-14
Identities = 46/155 (29%), Positives = 64/155 (41%)
Query: 3 STSTIQCYNCFDFGHYQYSCPQKSSADARGDKVGIVCYKCNNYGHFARECATESVT---- 58
S+S CYNC GH SCP+ + + + CY C GH +C T +
Sbjct: 22 SSSERLCYNCKQPGHESSSCPRPRTTETKQ------CYNCQGLGHVQADCPTLRLNGANG 75
Query: 59 -CYNCSGQGHVAKDCTVKSSIICYNCNSS-GHFARNCPND-----SSKRCYACHQAGHMA 111
CYNCS GH+A++C +S + G F + CY C H A
Sbjct: 76 RCYNCSQPGHLARNCPAPASGAPRGTGAPRGGFGGGFRGGYGGYPRAATCYKCGGPNHFA 135
Query: 112 KECPGQTAGKSPEPVVDMSLTCYVCGHQGHLSYDC 146
++C Q ++ CY CG GH+S DC
Sbjct: 136 RDCQAQ------------AMKCYACGKLGHISRDC 158
Score = 122 (48.0 bits), Expect = 1.7e-07, P = 1.7e-07
Identities = 24/67 (35%), Positives = 31/67 (46%)
Query: 80 CYNCNSSGHFARNCPNDSSKRCYACHQAGHMAKECPGQTAGKSPEPVVDMSLTCYVCGHQ 139
CY C + GH+A C + S + CY C Q GH + CP P + CY C
Sbjct: 8 CYKCGNIGHYAEVC-SSSERLCYNCKQPGHESSSCP--------RPRTTETKQCYNCQGL 58
Query: 140 GHLSYDC 146
GH+ DC
Sbjct: 59 GHVQADC 65
>WB|WBGene00019537 [details] [associations]
symbol:K08D12.3 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0000003 "reproduction" evidence=IMP]
[GO:0040011 "locomotion" evidence=IMP] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IMP]
[GO:0040007 "growth" evidence=IMP] [GO:0002119 "nematode larval
development" evidence=IMP] InterPro:IPR001878 Pfam:PF00098
PROSITE:PS50158 SMART:SM00343 GO:GO:0009792 GO:GO:0040007
GO:GO:0002119 GO:GO:0046872 GO:GO:0008270 GO:GO:0040011
GO:GO:0000003 GO:GO:0003676 Gene3D:4.10.60.10 SUPFAM:SSF57756
HOGENOM:HOG000186262 KO:K09250 OMA:FQFMSSS
GeneTree:ENSGT00510000047065 EMBL:FO081610 GeneID:176979
KEGG:cel:CELE_K08D12.3 UCSC:K08D12.3a.1 CTD:176979 NextBio:894830
RefSeq:NP_741323.1 ProteinModelPortal:Q966I7 SMR:Q966I7
STRING:Q966I7 PRIDE:Q966I7 EnsemblMetazoa:K08D12.3a.1
EnsemblMetazoa:K08D12.3a.2 WormBase:K08D12.3a InParanoid:Q966I7
ArrayExpress:Q966I7 Uniprot:Q966I7
Length = 151
Score = 217 (81.4 bits), Expect = 7.5e-18, P = 7.5e-18
Identities = 44/117 (37%), Positives = 60/117 (51%)
Query: 9 CYNCFDFGHYQYSCPQKSSADAR--GDKVGIVCYKCNNYGHFARECATESVTCYNCSGQG 66
CYNC + GH+ CP+ S + G G CY C GH++R+C S SG G
Sbjct: 37 CYNCQETGHFSRDCPKGGSGGGQRGGGGGGGSCYNCGGRGHYSRDCP--SARSEGGSG-G 93
Query: 67 HVAKDCTVKS--SIICYNCNSSGHFARNCPNDSS---KRCYACHQAGHMAKECPGQT 118
+ + +S CYNC SGH +R C S KRCY C + GH++++CP QT
Sbjct: 94 YGGRGGEGRSFGGQKCYNCGRSGHISRECTESGSAEEKRCYQCQETGHISRDCPSQT 150
Score = 213 (80.0 bits), Expect = 2.0e-17, P = 2.0e-17
Identities = 50/153 (32%), Positives = 69/153 (45%)
Query: 9 CYNCFDFGHYQYSCPQ-KSSADARGDKVGIVCYKCNNYGHFARECATESV---------- 57
CY C GH +CP +S RG G CY C GHF+R+C
Sbjct: 6 CYKCQQPGHISRNCPNGESDGGRRGGGGGSTCYNCQETGHFSRDCPKGGSGGGQRGGGGG 65
Query: 58 --TCYNCSGQGHVAKDCTVKSSIICYNCNSSGHFARNCPNDS--SKRCYACHQAGHMAKE 113
+CYNC G+GH ++DC S S G+ R S ++CY C ++GH+++E
Sbjct: 66 GGSCYNCGGRGHYSRDCPSARS----EGGSGGYGGRGGEGRSFGGQKCYNCGRSGHISRE 121
Query: 114 CPGQTAGKSPEPVVDMSLTCYVCGHQGHLSYDC 146
C +G + E CY C GH+S DC
Sbjct: 122 CT--ESGSAEEK------RCYQCQETGHISRDC 146
Score = 151 (58.2 bits), Expect = 7.4e-11, P = 7.4e-11
Identities = 33/93 (35%), Positives = 45/93 (48%)
Query: 9 CYNCFDFGHYQYSCPQKSSADARGDKVGIVCYKCNNYGHFARECATESVTCYNCSGQGHV 68
CYNC GHY CP SA + G G Y G R + CYNC GH+
Sbjct: 69 CYNCGGRGHYSRDCP---SARSEGGSGG---Y--GGRGGEGRSFGGQK--CYNCGRSGHI 118
Query: 69 AKDCTVKSSII---CYNCNSSGHFARNCPNDSS 98
+++CT S CY C +GH +R+CP+ ++
Sbjct: 119 SRECTESGSAEEKRCYQCQETGHISRDCPSQTN 151
Score = 101 (40.6 bits), Expect = 9.2e-05, P = 9.2e-05
Identities = 20/51 (39%), Positives = 26/51 (50%)
Query: 97 SSKRCYACHQAGHMAKECP-GQTAGKSPEPVVDMSLTCYVCGHQGHLSYDC 146
S + CY C Q GH+++ CP G++ G TCY C GH S DC
Sbjct: 2 SDRNCYKCQQPGHISRNCPNGESDGGRRGG--GGGSTCYNCQETGHFSRDC 50
>UNIPROTKB|Q8WW36 [details] [associations]
symbol:ZCCHC13 "Zinc finger CCHC domain-containing protein
13" species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR001878 Pfam:PF00098 PROSITE:PS50158 SMART:SM00343
GO:GO:0046872 GO:GO:0008270 GO:GO:0003676 eggNOG:COG5082
Gene3D:4.10.60.10 SUPFAM:SSF57756 HOGENOM:HOG000186262
HOVERGEN:HBG000397 EMBL:BC021176 IPI:IPI00397484 RefSeq:NP_976048.1
UniGene:Hs.157231 ProteinModelPortal:Q8WW36 SMR:Q8WW36
IntAct:Q8WW36 MINT:MINT-2879587 PhosphoSite:Q8WW36 DMDM:71152962
PRIDE:Q8WW36 DNASU:389874 Ensembl:ENST00000339534 GeneID:389874
KEGG:hsa:389874 UCSC:uc004ebs.4 CTD:389874 GeneCards:GC0XP073524
HGNC:HGNC:31749 HPA:HPA003382 neXtProt:NX_Q8WW36
PharmGKB:PA134926925 InParanoid:Q8WW36 OMA:SSKECFK PhylomeDB:Q8WW36
GenomeRNAi:389874 NextBio:103180 Bgee:Q8WW36 CleanEx:HS_ZCCHC13
Genevestigator:Q8WW36 GermOnline:ENSG00000187969 Uniprot:Q8WW36
Length = 166
Score = 216 (81.1 bits), Expect = 9.5e-18, P = 9.5e-18
Identities = 46/151 (30%), Positives = 65/151 (43%)
Query: 10 YNCFDFGHYQYSCPQ------KSSADARGDKVG-----IVCYKCNNYGHFARECATESVT 58
+ C GH+ CP+ + RG + G CY C G A+ C
Sbjct: 7 FACGHSGHWARGCPRGGAGGRRGGGHGRGSQCGSTTLSYTCYCCGESGRNAKNCVLLGNI 66
Query: 59 CYNCSGQGHVAKDCTV---KSSIICYNCNSSGHFARNCPNDSSKRCYACHQAGHMAKECP 115
CYNC GH+AKDC + CY C GH AR+C ++CY+C + GH+ K+C
Sbjct: 67 CYNCGRSGHIAKDCKDPKRERRQHCYTCGRLGHLARDCDRQKEQKCYSCGKLGHIQKDCA 126
Query: 116 GQTAGKSPEPVVDMSLTCYVCGHQGHLSYDC 146
+ CY CG GH++ +C
Sbjct: 127 --------------QVKCYRCGEIGHVAINC 143
Score = 190 (71.9 bits), Expect = 5.4e-15, P = 5.4e-15
Identities = 42/111 (37%), Positives = 56/111 (50%)
Query: 46 GHF-ARECA--TESVTCYNCSGQGHVAKDCTVKSSIICYNCNSSGHFARNCPNDSSKR-- 100
GH +C T S TCY C G AK+C + +I CYNC SGH A++C + +R
Sbjct: 31 GHGRGSQCGSTTLSYTCYCCGESGRNAKNCVLLGNI-CYNCGRSGHIAKDCKDPKRERRQ 89
Query: 101 -CYACHQAGHMAKECPGQTAGKSPEPVVDMSLTCYVCGHQGHLSYDCKLVQ 150
CY C + GH+A++C Q K CY CG GH+ DC V+
Sbjct: 90 HCYTCGRLGHLARDCDRQKEQK-----------CYSCGKLGHIQKDCAQVK 129
Score = 181 (68.8 bits), Expect = 4.9e-14, P = 4.9e-14
Identities = 39/124 (31%), Positives = 57/124 (45%)
Query: 2 SSTSTIQCYNCFDFGHYQYSCPQKSSADARGDKVGIVCYKCNNYGHFARECATESVT--- 58
S+T + CY C + G +C +G +CY C GH A++C
Sbjct: 40 STTLSYTCYCCGESGRNAKNCVL----------LGNICYNCGRSGHIAKDCKDPKRERRQ 89
Query: 59 -CYNCSGQGHVAKDCTVKSSIICYNCNSSGHFARNCPNDSSKRCYACHQAGHMAKEC--- 114
CY C GH+A+DC + CY+C GH ++C + +CY C + GH+A C
Sbjct: 90 HCYTCGRLGHLARDCDRQKEQKCYSCGKLGHIQKDC---AQVKCYRCGEIGHVAINCSKA 146
Query: 115 -PGQ 117
PGQ
Sbjct: 147 RPGQ 150
>UNIPROTKB|G4MRA3 [details] [associations]
symbol:MGG_13778 "Zinc finger protein GIS2" species:242507
"Magnaporthe oryzae 70-15" [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR001878 Pfam:PF00098 PROSITE:PS50158 SMART:SM00343
GO:GO:0046872 GO:GO:0008270 GO:GO:0003676 Gene3D:4.10.60.10
SUPFAM:SSF57756 EMBL:CM001231 KO:K09250 RefSeq:XP_003710840.1
ProteinModelPortal:G4MRA3 EnsemblFungi:MGG_13778T0 GeneID:5048998
KEGG:mgr:MGG_13778 Uniprot:G4MRA3
Length = 230
Score = 213 (80.0 bits), Expect = 2.0e-17, P = 2.0e-17
Identities = 50/156 (32%), Positives = 68/156 (43%)
Query: 3 STSTIQCYNCFDFGHYQYSCP--QKSSADARGDKVGIVCYKCNNYGHFARECATESVTCY 60
+T QCY+C GH Q CP + S A + G CY C GH AR C +
Sbjct: 47 TTEAKQCYHCQGLGHVQADCPTLRLSGAGSNGR-----CYSCGQPGHLARACPNPNGANM 101
Query: 61 NCS--------GQGHVAKDCTVKSS--IICYNCNSSGHFARNCPNDSSKRCYACHQAGHM 110
G G+ + + CY C HFAR+C + K CYAC + GH+
Sbjct: 102 GRGAPVPRGGYGGGYGGRGGFAGGARPATCYKCGGPNHFARDCQAQAMK-CYACGKLGHI 160
Query: 111 AKECPGQTAGKSPEPVVDMSLTCYVCGHQGHLSYDC 146
+++C G P+ + TCY CG GH+S C
Sbjct: 161 SRDCTAPNGG----PLNTVGKTCYQCGEAGHISRQC 192
Score = 200 (75.5 bits), Expect = 4.7e-16, P = 4.7e-16
Identities = 55/160 (34%), Positives = 71/160 (44%)
Query: 1 MSSTSTIQCYNCFDFGHYQYSCPQKSSADARGDKVGIVCYKCNNYGHFAREC----ATES 56
MSS S CY C + GHY C SSA+ +CY C GH + C TE+
Sbjct: 1 MSSLSRRACYKCGNVGHYAEVC---SSAER-------LCYNCKQPGHESNGCPLPRTTEA 50
Query: 57 VTCYNCSGQGHVAKDC-TVK-----SSIICYNCNSSGHFARNCPNDSSK---RCYACHQA 107
CY+C G GHV DC T++ S+ CY+C GH AR CPN + R +
Sbjct: 51 KQCYHCQGLGHVQADCPTLRLSGAGSNGRCYSCGQPGHLARACPNPNGANMGRGAPVPRG 110
Query: 108 GHMAKECPGQTAGKSPEPVVDMSLTCYVCGHQGHLSYDCK 147
G+ G G+ TCY CG H + DC+
Sbjct: 111 GY-----GGGYGGRGGFAGGARPATCYKCGGPNHFARDCQ 145
Score = 192 (72.6 bits), Expect = 3.3e-15, P = 3.3e-15
Identities = 40/116 (34%), Positives = 56/116 (48%)
Query: 8 QCYNCFDFGHYQYSCPQKSSAD-ARGDKVGIVCYKCNNYGHFARECATESVTCYNCSGQG 66
+CY+C GH +CP + A+ RG V Y G TCY C G
Sbjct: 79 RCYSCGQPGHLARACPNPNGANMGRGAPVPRGGYGGGYGGRGGFAGGARPATCYKCGGPN 138
Query: 67 HVAKDCTVKSSIICYNCNSSGHFARNC--PNDS-----SKRCYACHQAGHMAKECP 115
H A+DC ++ + CY C GH +R+C PN K CY C +AGH++++CP
Sbjct: 139 HFARDCQAQA-MKCYACGKLGHISRDCTAPNGGPLNTVGKTCYQCGEAGHISRQCP 193
Score = 161 (61.7 bits), Expect = 6.4e-12, P = 6.4e-12
Identities = 34/100 (34%), Positives = 49/100 (49%)
Query: 39 CYKCNNYGHFARECATESVTCYNCSGQGHVAKDCTVKSS-------IICYNCNSSGHFAR 91
CYKC HFAR+C +++ CY C GH+++DCT + CY C +GH +R
Sbjct: 131 CYKCGGPNHFARDCQAQAMKCYACGKLGHISRDCTAPNGGPLNTVGKTCYQCGEAGHISR 190
Query: 92 NCPNDSSKRCYACHQA-GHMAKECPGQTA-GKSP--EPVV 127
CP ++ + A H P TA ++P PVV
Sbjct: 191 QCPTKATANGDSNAAAPAHNDAPMPDATAVAQAPIAAPVV 230
Score = 150 (57.9 bits), Expect = 9.4e-11, P = 9.4e-11
Identities = 41/154 (26%), Positives = 61/154 (39%)
Query: 9 CYNCFDFGHYQYSCPQKSSADARGDKVGIVCYKCNNYGHFARECATESVT-------CYN 61
CYNC GH CP + +A+ CY C GH +C T ++ CY+
Sbjct: 29 CYNCKQPGHESNGCPLPRTTEAKQ------CYHCQGLGHVQADCPTLRLSGAGSNGRCYS 82
Query: 62 CSGQGHVAKDCTV-------KSSIICYNCNSSGHFARNCPNDSSK--RCYACHQAGHMAK 112
C GH+A+ C + + + G+ R ++ CY C H A+
Sbjct: 83 CGQPGHLARACPNPNGANMGRGAPVPRGGYGGGYGGRGGFAGGARPATCYKCGGPNHFAR 142
Query: 113 ECPGQTAGKSPEPVVDMSLTCYVCGHQGHLSYDC 146
+C Q ++ CY CG GH+S DC
Sbjct: 143 DCQAQ------------AMKCYACGKLGHISRDC 164
Score = 116 (45.9 bits), Expect = 8.1e-07, P = 8.1e-07
Identities = 24/73 (32%), Positives = 34/73 (46%)
Query: 80 CYNCNSSGHFARNCPNDSSKRCYACHQAGHMAKECPGQTAGKSPEPVVDMSLTCYVCGHQ 139
CY C + GH+A C + + + CY C Q GH + CP P + CY C
Sbjct: 9 CYKCGNVGHYAEVC-SSAERLCYNCKQPGHESNGCP--------LPRTTEAKQCYHCQGL 59
Query: 140 GHLSYDCKLVQKS 152
GH+ DC ++ S
Sbjct: 60 GHVQADCPTLRLS 72
>UNIPROTKB|G4N4A8 [details] [associations]
symbol:MGG_05948 "Zinc knuckle domain-containing protein"
species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR001878 Pfam:PF00098 PROSITE:PS50158
SMART:SM00343 EMBL:CM001233 GO:GO:0046872 GO:GO:0008270
GO:GO:0003676 Gene3D:4.10.60.10 SUPFAM:SSF57756 KO:K09250
RefSeq:XP_003711783.1 ProteinModelPortal:G4N4A8
EnsemblFungi:MGG_05948T0 GeneID:2684027 KEGG:mgr:MGG_05948
Uniprot:G4N4A8
Length = 199
Score = 204 (76.9 bits), Expect = 1.8e-16, P = 1.8e-16
Identities = 36/93 (38%), Positives = 48/93 (51%)
Query: 58 TCYNCSGQGHVAKDCTVKSSIICYNCNSSGHFARNCPND--SSKRCYACHQAGHMAKECP 115
TCY C H A+DC + + CYNC GH +R CP + K CY C Q GH++++CP
Sbjct: 15 TCYTCGQPNHQARDCPNRGAAKCYNCGGEGHISRACPEEPKDQKICYRCSQPGHISRDCP 74
Query: 116 GQTAGKSPEPVVDMS--LTCYVCGHQGHLSYDC 146
AG S CY CG GH++ +C
Sbjct: 75 SGGAGGGGGGGGGQSSGAECYKCGEVGHIARNC 107
Score = 195 (73.7 bits), Expect = 1.6e-15, P = 1.6e-15
Identities = 41/115 (35%), Positives = 55/115 (47%)
Query: 4 TSTIQCYNCFDFGHYQYSCPQKSSADARGDKVGIVCYKCNNYGHFARECATESVTCYNCS 63
+S +CY C + GH +C + G G YG TCY+C
Sbjct: 89 SSGAECYKCGEVGHIARNCSKGGYGGGGG---GGYSGGGGGYGG-GYGGGAGGKTCYSCG 144
Query: 64 GQGHVAKDCTVKSSIICYNCNSSGHFARNCPNDSS---KRCYACHQAGHMAKECP 115
G GH+++DC S CYNC +GHF+R+C S+ K CY C Q GH+ ECP
Sbjct: 145 GVGHMSRDCVNGSK--CYNCGETGHFSRDCSKRSTTGEKMCYKCQQPGHVQAECP 197
Score = 188 (71.2 bits), Expect = 8.8e-15, P = 8.8e-15
Identities = 44/148 (29%), Positives = 60/148 (40%)
Query: 9 CYNCFDFGHYQYSCPQKSSADARG----DKVGIVCYKCNNYGHFARECATESVTC----- 59
CY C GH CP + G G CYKC GH AR C+
Sbjct: 60 CYRCSQPGHISRDCPSGGAGGGGGGGGGQSSGAECYKCGEVGHIARNCSKGGYGGGGGGG 119
Query: 60 YNCSGQGHVAKDCTVKSSIICYNCNSSGHFARNCPNDSSKRCYACHQAGHMAKECPGQ-T 118
Y+ G G+ CY+C GH +R+C N S +CY C + GH +++C + T
Sbjct: 120 YSGGGGGYGGGYGGGAGGKTCYSCGGVGHMSRDCVNGS--KCYNCGETGHFSRDCSKRST 177
Query: 119 AGKSPEPVVDMSLTCYVCGHQGHLSYDC 146
G+ CY C GH+ +C
Sbjct: 178 TGEK---------MCYKCQQPGHVQAEC 196
Score = 185 (70.2 bits), Expect = 1.8e-14, P = 1.8e-14
Identities = 35/99 (35%), Positives = 47/99 (47%)
Query: 32 GDKVGIVCYKCNNYGHFARECATESVT-CYNCSGQGHVAKDCTV--KSSIICYNCNSSGH 88
G G CY C H AR+C CYNC G+GH+++ C K ICY C+ GH
Sbjct: 9 GGAGGRTCYTCGQPNHQARDCPNRGAAKCYNCGGEGHISRACPEEPKDQKICYRCSQPGH 68
Query: 89 FARNCPN-------------DSSKRCYACHQAGHMAKEC 114
+R+CP+ S CY C + GH+A+ C
Sbjct: 69 ISRDCPSGGAGGGGGGGGGQSSGAECYKCGEVGHIARNC 107
Score = 174 (66.3 bits), Expect = 2.7e-13, P = 2.7e-13
Identities = 49/154 (31%), Positives = 57/154 (37%)
Query: 9 CYNCFDFGHYQYSCPQKSSADARGDKVGIVCYKCNNYGHFARECATE---SVTCYNCSGQ 65
CY C H CP + +A CY C GH +R C E CY CS
Sbjct: 16 CYTCGQPNHQARDCPNRGAAK---------CYNCGGEGHISRACPEEPKDQKICYRCSQP 66
Query: 66 GHVAKDCTV-------------KSSIICYNCNSSGHFARNCPNDSSKRCYACHQAGHMAK 112
GH+++DC S CY C GH ARNC SK Y G +
Sbjct: 67 GHISRDCPSGGAGGGGGGGGGQSSGAECYKCGEVGHIARNC----SKGGYGGGGGGGYSG 122
Query: 113 ECPGQTAGKSPEPVVDMSLTCYVCGHQGHLSYDC 146
G G TCY CG GH+S DC
Sbjct: 123 GGGGYGGGYGGGAG---GKTCYSCGGVGHMSRDC 153
Score = 161 (61.7 bits), Expect = 6.4e-12, P = 6.4e-12
Identities = 27/68 (39%), Positives = 36/68 (52%)
Query: 32 GDKVGIVCYKCNNYGHFARECATESVTCYNCSGQGHVAKDCTVKSSI---ICYNCNSSGH 88
G G CY C GH +R+C S CYNC GH ++DC+ +S+ +CY C GH
Sbjct: 133 GGAGGKTCYSCGGVGHMSRDCVNGS-KCYNCGETGHFSRDCSKRSTTGEKMCYKCQQPGH 191
Query: 89 FARNCPND 96
CPN+
Sbjct: 192 VQAECPNN 199
>TAIR|locus:2827810 [details] [associations]
symbol:CSP3 "cold shock domain protein 3" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA;ISS] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM;IDA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0009409 "response to cold"
evidence=IEP;IMP] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0009631
"cold acclimation" evidence=IMP] [GO:0032508 "DNA duplex unwinding"
evidence=IDA] InterPro:IPR001878 InterPro:IPR002059
InterPro:IPR011129 Pfam:PF00098 Pfam:PF00313 PRINTS:PR00050
PROSITE:PS50158 SMART:SM00343 SMART:SM00357 Prosite:PS00352
GO:GO:0005634 GO:GO:0005737 EMBL:CP002685 GenomeReviews:CT485783_GR
GO:GO:0006355 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
GO:GO:0009631 GO:GO:0003723 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 Gene3D:4.10.60.10 SUPFAM:SSF57756
HOGENOM:HOG000186262 KO:K09250 InterPro:IPR019844 eggNOG:COG1278
ProtClustDB:CLSN2685328 GO:GO:0032508 HSSP:O54310 EMBL:AB308041
EMBL:AY035133 EMBL:AY062985 IPI:IPI00519047 PIR:T00837
RefSeq:NP_565427.1 UniGene:At.19464 ProteinModelPortal:Q94C69
SMR:Q94C69 PaxDb:Q94C69 PRIDE:Q94C69 EnsemblPlants:AT2G17870.1
GeneID:816297 KEGG:ath:AT2G17870 TAIR:At2g17870 InParanoid:Q94C69
OMA:MEDQSAA PhylomeDB:Q94C69 Genevestigator:Q94C69 Uniprot:Q94C69
Length = 301
Score = 199 (75.1 bits), Expect = 6.0e-16, P = 6.0e-16
Identities = 46/135 (34%), Positives = 57/135 (42%)
Query: 9 CYNCFDFGHYQYSCPQKSSADARGD-----KVGIVCYKCNNYGHFARECATES------- 56
CY+C + GH C S + G G CY C GHFAR+C
Sbjct: 163 CYSCGEVGHLAKDCRGGSGGNRYGGGGGRGSGGDGCYMCGGVGHFARDCRQNGGGNVGGG 222
Query: 57 -VTCYNCSGQGHVAKDCTVK-------SSIICYNCNSSGHFARNCPN---------DSSK 99
TCY C G GH+AK CT K CY C +GH AR+C S
Sbjct: 223 GSTCYTCGGVGHIAKVCTSKIPSGGGGGGRACYECGGTGHLARDCDRRGSGSSGGGGGSN 282
Query: 100 RCYACHQAGHMAKEC 114
+C+ C + GH A+EC
Sbjct: 283 KCFICGKEGHFAREC 297
Score = 194 (73.4 bits), Expect = 2.3e-15, P = 2.3e-15
Identities = 48/147 (32%), Positives = 59/147 (40%)
Query: 8 QCYNCFDFGHYQYSCPQKSSADARGDKVG-IVCYKCNNYGHFARECATESVTCYNCSGQG 66
+CY C D GH+ C Q ++ G G CY C GH A++C S G G
Sbjct: 131 ECYMCGDVGHFARDCRQSGGGNSGGGGGGGRPCYSCGEVGHLAKDCRGGSGGNRYGGGGG 190
Query: 67 HVAKDCTVKSSIICYNCNSSGHFARNCPNDSS-------KRCYACHQAGHMAKECPGQTA 119
+ CY C GHFAR+C + CY C GH+AK C
Sbjct: 191 RGS------GGDGCYMCGGVGHFARDCRQNGGGNVGGGGSTCYTCGGVGHIAKVC----T 240
Query: 120 GKSPEPVVDMSLTCYVCGHQGHLSYDC 146
K P CY CG GHL+ DC
Sbjct: 241 SKIPSGGGGGGRACYECGGTGHLARDC 267
Score = 160 (61.4 bits), Expect = 2.1e-11, P = 2.1e-11
Identities = 48/158 (30%), Positives = 62/158 (39%)
Query: 9 CYNCFDFGHYQYSCPQ----KSSADARGDKVGIV--CYKCNNYGHFARECATESVTCYNC 62
C+NC + GH C KS G + G CY C + GHFAR+C N
Sbjct: 96 CFNCGEVGHMAKDCDGGSGGKSFGGGGGRRSGGEGECYMCGDVGHFARDCRQSGGG--NS 153
Query: 63 SGQGHVAKDCTVKSSIICYNCNSSGHFARNCPNDSSKR--------------CYACHQAG 108
G G + C Y+C GH A++C S CY C G
Sbjct: 154 GGGGGGGRPC--------YSCGEVGHLAKDCRGGSGGNRYGGGGGRGSGGDGCYMCGGVG 205
Query: 109 HMAKECPGQTAGKSPEPVVDMSLTCYVCGHQGHLSYDC 146
H A++C Q G + V TCY CG GH++ C
Sbjct: 206 HFARDCR-QNGGGN---VGGGGSTCYTCGGVGHIAKVC 239
Score = 145 (56.1 bits), Expect = 9.9e-10, P = 9.9e-10
Identities = 40/136 (29%), Positives = 56/136 (41%)
Query: 25 KSSADARGDKVGIVCYKCNNYGHFARECATESVTCYNCSGQGHVAKDCTVKSSIICYNCN 84
K +RG G C+ C GH A++C S G G + + CY C
Sbjct: 84 KKENSSRGS--GGNCFNCGEVGHMAKDCDGGSGGKSFGGGGGRRSGG---EGE--CYMCG 136
Query: 85 SSGHFARNCPNDSS----------KRCYACHQAGHMAKECPGQTAGKSPEPVVDMSLT-- 132
GHFAR+C + CY+C + GH+AK+C G + G
Sbjct: 137 DVGHFARDCRQSGGGNSGGGGGGGRPCYSCGEVGHLAKDCRGGSGGNRYGGGGGRGSGGD 196
Query: 133 -CYVCGHQGHLSYDCK 147
CY+CG GH + DC+
Sbjct: 197 GCYMCGGVGHFARDCR 212
Score = 114 (45.2 bits), Expect = 2.7e-06, P = 2.7e-06
Identities = 25/75 (33%), Positives = 32/75 (42%)
Query: 9 CYNCFDFGHYQYSCPQKSSADARGDKVGIVCYKCNNYGHFARECATE----------SVT 58
CY C GH C K + G G CY+C GH AR+C S
Sbjct: 226 CYTCGGVGHIAKVCTSKIPSGGGGG--GRACYECGGTGHLARDCDRRGSGSSGGGGGSNK 283
Query: 59 CYNCSGQGHVAKDCT 73
C+ C +GH A++CT
Sbjct: 284 CFICGKEGHFARECT 298
>TAIR|locus:2078526 [details] [associations]
symbol:AT3G42860 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA;ISS] [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0000724 "double-strand break repair via homologous
recombination" evidence=RCA] [GO:0009640 "photomorphogenesis"
evidence=RCA] [GO:0010212 "response to ionizing radiation"
evidence=RCA] [GO:0010388 "cullin deneddylation" evidence=RCA]
[GO:0016567 "protein ubiquitination" evidence=RCA] [GO:0016571
"histone methylation" evidence=RCA] [GO:0016579 "protein
deubiquitination" evidence=RCA] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=RCA] InterPro:IPR001878
InterPro:IPR010666 Pfam:PF00098 Pfam:PF06839 PROSITE:PS50158
SMART:SM00343 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0046872
GO:GO:0008270 GO:GO:0003676 eggNOG:COG5082 Gene3D:4.10.60.10
SUPFAM:SSF57756 EMBL:AL138654 EMBL:AY065276 EMBL:AY133785
IPI:IPI00532574 PIR:T47344 RefSeq:NP_189872.1 UniGene:At.28534
ProteinModelPortal:Q9M1L9 SMR:Q9M1L9 EnsemblPlants:AT3G42860.1
GeneID:823332 KEGG:ath:AT3G42860 TAIR:At3g42860
HOGENOM:HOG000006218 InParanoid:Q9M1L9 OMA:CGFFKWC PhylomeDB:Q9M1L9
ProtClustDB:CLSN2684249 ArrayExpress:Q9M1L9 Genevestigator:Q9M1L9
Uniprot:Q9M1L9
Length = 372
Score = 191 (72.3 bits), Expect = 1.4e-14, P = 1.4e-14
Identities = 50/148 (33%), Positives = 69/148 (46%)
Query: 20 YSCPQKSS---ADARG---DKVGIVCYKCNNYGHFARECATESVT-----------CYNC 62
YS + S+ +D RG K G CYKC GH+AR+C +S T C+ C
Sbjct: 214 YSVTKNSNFGDSDTRGYQNAKTGTPCYKCGKEGHWARDCTVQSDTGPVKSTSAAGDCFKC 273
Query: 63 SGQGHVAKDCTVKSSIICYNCNSSGHFARNCPNDSSKRCYACHQAGHMAKECPGQTAGKS 122
GH ++DCT +S Y G + SS CY C + GH +++C GQ++ +
Sbjct: 274 GKPGHWSRDCTAQSGNPKYE---PGQMKSS---SSSGECYKCGKQGHWSRDCTGQSSNQQ 327
Query: 123 PEP--VVDMSLT--CYVCGHQGHLSYDC 146
+ S T CY CG GH S DC
Sbjct: 328 FQSGQAKSTSSTGDCYKCGKAGHWSRDC 355
Score = 155 (59.6 bits), Expect = 1.3e-10, P = 1.3e-10
Identities = 41/135 (30%), Positives = 59/135 (43%)
Query: 2 SSTSTIQCYNCFDFGHYQYSCP-QKSSADARGDKVGIVCYKCNNYGHFARECATESVTCY 60
+ T T CY C GH+ C Q + + C+KC GH++R+C +S
Sbjct: 233 AKTGT-PCYKCGKEGHWARDCTVQSDTGPVKSTSAAGDCFKCGKPGHWSRDCTAQSGNPK 291
Query: 61 NCSGQGHVAKDCTVKSSIICYNCNSSGHFARNCPNDSSKR---------------CYACH 105
GQ K + SS CY C GH++R+C SS + CY C
Sbjct: 292 YEPGQ---MKSSS--SSGECYKCGKQGHWSRDCTGQSSNQQFQSGQAKSTSSTGDCYKCG 346
Query: 106 QAGHMAKEC--PGQT 118
+AGH +++C P QT
Sbjct: 347 KAGHWSRDCTSPAQT 361
>UNIPROTKB|Q65XV7 [details] [associations]
symbol:P0016H04.11 "Os05g0111000 protein" species:39947
"Oryza sativa Japonica Group" [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR001878 InterPro:IPR004365
InterPro:IPR004591 InterPro:IPR007199 Pfam:PF00098 Pfam:PF01336
Pfam:PF04057 PROSITE:PS50158 SMART:SM00343 GO:GO:0005634
GO:GO:0046872 GO:GO:0003677 GO:GO:0006260 GO:GO:0008270
EMBL:AP008211 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
Gene3D:4.10.60.10 SUPFAM:SSF57756 EMBL:CM000142 InterPro:IPR013955
Pfam:PF08646 eggNOG:COG1599 KO:K07466 TIGRFAMs:TIGR00617
HOGENOM:HOG000162322 EMBL:AC079356 RefSeq:NP_001054445.1
UniGene:Os.53618 IntAct:Q65XV7 EnsemblPlants:LOC_Os05g02040.1
GeneID:4337594 KEGG:osa:4337594 OMA:RWTIKVR ProtClustDB:CLSN2695308
Uniprot:Q65XV7
Length = 951
Score = 198 (74.8 bits), Expect = 1.6e-14, P = 1.6e-14
Identities = 42/125 (33%), Positives = 62/125 (49%)
Query: 1 MSSTSTIQ-CYNCFDFGHYQYSCPQKSSADARGDKVGIVCYKCNNYGHFARECATESVTC 59
+++T +Q C C GH C + D + G NY A ++E C
Sbjct: 807 LAATRNLQTCSICGANGHSAQICHVGADMDMQETSAG--GSSMGNYNSIAGNGSSE---C 861
Query: 60 YNCSGQGHVAKDCTVKSS--IICYNCNSSGHFARNCPNDSS--KRCYACHQAGHMAKECP 115
Y C GH A+DC +S+ + C+ C GHF+R+CP S+ C+ C Q GH A++CP
Sbjct: 862 YKCKQPGHYARDCPGQSTGGLECFKCKQPGHFSRDCPVQSTGGSECFKCKQPGHFARDCP 921
Query: 116 GQTAG 120
GQ+ G
Sbjct: 922 GQSTG 926
Score = 151 (58.2 bits), Expect = 1.6e-09, P = 1.6e-09
Identities = 36/115 (31%), Positives = 49/115 (42%)
Query: 39 CYKCNNYGHFARECATES-----VTCYNCSGQGHVAKDCTVKSSIICYNCNSSGHFARNC 93
C C GH A+ C + T S G+ S CY C GH+AR+C
Sbjct: 816 CSICGANGHSAQICHVGADMDMQETSAGGSSMGNY-NSIAGNGSSECYKCKQPGHYARDC 874
Query: 94 PNDSSK--RCYACHQAGHMAKECPGQTAGKSPEPVVDMSLTCYVCGHQGHLSYDC 146
P S+ C+ C Q GH +++CP Q+ G S C+ C GH + DC
Sbjct: 875 PGQSTGGLECFKCKQPGHFSRDCPVQSTGGSE---------CFKCKQPGHFARDC 920
Score = 144 (55.7 bits), Expect = 9.2e-09, P = 9.2e-09
Identities = 33/98 (33%), Positives = 45/98 (45%)
Query: 53 ATESV-TCYNCSGQGHVAKDCTVKSSIICYNCNSSGHFARN---CPNDSSKRCYACHQAG 108
AT ++ TC C GH A+ C V + + ++ G N + S CY C Q G
Sbjct: 809 ATRNLQTCSICGANGHSAQICHVGADMDMQETSAGGSSMGNYNSIAGNGSSECYKCKQPG 868
Query: 109 HMAKECPGQTAGKSPEPVVDMSLTCYVCGHQGHLSYDC 146
H A++CPGQ+ G L C+ C GH S DC
Sbjct: 869 HYARDCPGQSTG---------GLECFKCKQPGHFSRDC 897
>TAIR|locus:2156647 [details] [associations]
symbol:AT5G52380 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA;ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0009560 "embryo sac egg cell differentiation"
evidence=RCA] InterPro:IPR001878 Pfam:PF00098 PROSITE:PS50158
SMART:SM00343 EMBL:CP002688 GO:GO:0046872 GO:GO:0008270
GO:GO:0003676 EMBL:AB019226 Gene3D:4.10.60.10 SUPFAM:SSF57756
InterPro:IPR025836 Pfam:PF14392 EMBL:BT025034 IPI:IPI00544651
RefSeq:NP_200051.1 UniGene:At.29618 ProteinModelPortal:Q9FHC2
SMR:Q9FHC2 PRIDE:Q9FHC2 EnsemblPlants:AT5G52380.1 GeneID:835314
KEGG:ath:AT5G52380 TAIR:At5g52380 InParanoid:Q9FHC2 OMA:KLCYNCG
PhylomeDB:Q9FHC2 ProtClustDB:CLSN2686088 Genevestigator:Q9FHC2
Uniprot:Q9FHC2
Length = 268
Score = 178 (67.7 bits), Expect = 1.0e-13, P = 1.0e-13
Identities = 46/139 (33%), Positives = 63/139 (45%)
Query: 32 GDKVGIVCYKCNNYGHFARECATESV-----TCYNCSGQGHVAKDCTVKSSI-----ICY 81
G K G C+ C++ H A+ C +S C C +GH K+C K++ +CY
Sbjct: 69 GMKPGEGCFICHSKTHIAKLCPEKSEWERNKICLQCRRRGHSLKNCPEKNNESSEKKLCY 128
Query: 82 NCNSSGHFARNCP---NDSSKR---CYACHQAGHMAKECPGQTAGKSPEPVVDMSLTCYV 135
NC +GH +CP D + C+ C GH++K CP G P M C V
Sbjct: 129 NCGDTGHSLSHCPYPMEDGGTKFASCFICKGQGHISKNCPENKHGIYP-----MGGCCKV 183
Query: 136 CGHQGHLSYDC--KLVQKS 152
CG HL DC K Q+S
Sbjct: 184 CGSVAHLVKDCPDKFNQES 202
Score = 157 (60.3 bits), Expect = 2.8e-11, P = 2.8e-11
Identities = 36/135 (26%), Positives = 54/135 (40%)
Query: 9 CYNCFDFGHYQYSCPQKSSADARGDKVGIVCYKCNNYGHFAREC------ATESVTCYNC 62
C+ C H CP+KS + +K+ C +C GH + C ++E CYNC
Sbjct: 76 CFICHSKTHIAKLCPEKSEWER--NKI---CLQCRRRGHSLKNCPEKNNESSEKKLCYNC 130
Query: 63 SGQGHVAKDCTVKSS------IICYNCNSSGHFARNCPNDS------SKRCYACHQAGHM 110
GH C C+ C GH ++NCP + C C H+
Sbjct: 131 GDTGHSLSHCPYPMEDGGTKFASCFICKGQGHISKNCPENKHGIYPMGGCCKVCGSVAHL 190
Query: 111 AKECPGQTAGKSPEP 125
K+CP + +S +P
Sbjct: 191 VKDCPDKFNQESAQP 205
>TAIR|locus:2079859 [details] [associations]
symbol:AT3G43590 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA;ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0008270 "zinc ion binding"
evidence=IEA] InterPro:IPR001878 Pfam:PF00098 PROSITE:PS50158
SMART:SM00343 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0046872
GO:GO:0008270 GO:GO:0003676 eggNOG:COG5082 Gene3D:4.10.60.10
SUPFAM:SSF57756 EMBL:AL391734 EMBL:AY099824 EMBL:BT002203
IPI:IPI00517919 RefSeq:NP_189945.1 UniGene:At.36254
ProteinModelPortal:Q9FYD1 SMR:Q9FYD1 IntAct:Q9FYD1 PRIDE:Q9FYD1
EnsemblPlants:AT3G43590.1 GeneID:823456 KEGG:ath:AT3G43590
TAIR:At3g43590 HOGENOM:HOG000071063 InParanoid:Q9FYD1 OMA:RECPNSS
PhylomeDB:Q9FYD1 ProtClustDB:CLSN2684404 ArrayExpress:Q9FYD1
Genevestigator:Q9FYD1 Uniprot:Q9FYD1
Length = 551
Score = 179 (68.1 bits), Expect = 7.3e-13, P = 7.3e-13
Identities = 44/151 (29%), Positives = 65/151 (43%)
Query: 7 IQCYNCFDFGHYQYSCPQKSSADARGDKVGIVCYKCNNYGHFARECATESVTCYNCSGQG 66
+ CY+C + GH ++CP + K C+ C + H A++C+ + CY C G
Sbjct: 166 VSCYSCGEQGHTSFNCPTPT-------KRRKPCFICGSLEHGAKQCS-KGHDCYICKKTG 217
Query: 67 HVAKDCTVK-----SSIICYNCNSSGHFARNCPNDSSK------RCYACHQAGHMAKECP 115
H AKDC K +C C GH C + SK +CY C GH+ P
Sbjct: 218 HRAKDCPDKYKNGSKGAVCLRCGDFGHDMILCKYEYSKEDLKDVQCYICKSFGHLCCVEP 277
Query: 116 GQTAGKSPEPVVDMSLTCYVCGHQGHLSYDC 146
G + + +++CY CG GH C
Sbjct: 278 GNS--------LSWAVSCYRCGQLGHSGLAC 300
Score = 172 (65.6 bits), Expect = 4.2e-12, P = 4.2e-12
Identities = 43/145 (29%), Positives = 60/145 (41%)
Query: 9 CYNCFDFGHYQYSCPQKSSADARGDKVGIVCYKCNNYGHFARECATE-------SVTCYN 61
C C DFGH C + S + D + CY C ++GH C E +V+CY
Sbjct: 236 CLRCGDFGHDMILCKYEYSKE---DLKDVQCYICKSFGHL---CCVEPGNSLSWAVSCYR 289
Query: 62 CSGQGHVAKDCTVKSSIICYNCNSSGHFARNCPNDSSKRCYACHQAGHMAKECPGQTAGK 121
C GH C N N S R + + CY C + GH A+ECP ++
Sbjct: 290 CGQLGHSGLACGRHYEES--NENDSATPERLFNSREASECYRCGEEGHFARECPNSSSIS 347
Query: 122 SPEPVVDMSLTCYVCGHQGHLSYDC 146
+ +L CY C GH + +C
Sbjct: 348 TSHGRESQTL-CYRCNGSGHFAREC 371
Score = 162 (62.1 bits), Expect = 5.0e-11, P = 5.0e-11
Identities = 39/122 (31%), Positives = 51/122 (41%)
Query: 7 IQCYNCFDFGHYQYSCPQKSSADARGDKVGIVCYKCNNYGHFARECATESVTCYNCSGQG 66
+QCY C FGH P S + A + CY+C GH C N +
Sbjct: 261 VQCYICKSFGHLCCVEPGNSLSWA------VSCYRCGQLGHSGLACGRHYEES-NENDSA 313
Query: 67 HVAKDCTVKSSIICYNCNSSGHFARNCPNDSS----------KRCYACHQAGHMAKECPG 116
+ + + CY C GHFAR CPN SS CY C+ +GH A+ECP
Sbjct: 314 TPERLFNSREASECYRCGEEGHFARECPNSSSISTSHGRESQTLCYRCNGSGHFARECPN 373
Query: 117 QT 118
+
Sbjct: 374 SS 375
Score = 156 (60.0 bits), Expect = 2.2e-10, P = 2.2e-10
Identities = 40/119 (33%), Positives = 51/119 (42%)
Query: 7 IQCYNCFDFGH--------YQYSCPQKSSADAR--GDKVGIVCYKCNNYGHFARECATES 56
+ CY C GH Y+ S S+ R + CY+C GHFAREC S
Sbjct: 285 VSCYRCGQLGHSGLACGRHYEESNENDSATPERLFNSREASECYRCGEEGHFARECPNSS 344
Query: 57 VTCYNCSGQGHVAKDCTVKSSIICYNCNSSGHFARNCPNDS--SKRCYACHQAGHMAKE 113
+ G +S +CY CN SGHFAR CPN S SKR H +++
Sbjct: 345 SIS---TSHGR-------ESQTLCYRCNGSGHFARECPNSSQVSKRDRETSTTSHKSRK 393
Score = 143 (55.4 bits), Expect = 5.5e-09, P = 5.5e-09
Identities = 33/93 (35%), Positives = 42/93 (45%)
Query: 57 VTCYNCSGQGHVAKDCTV--KSSIICYNCNSSGHFARNCPNDSSKRCYACHQAGHMAKEC 114
V+CY+C QGH + +C K C+ C S H A+ C CY C + GH AK+C
Sbjct: 166 VSCYSCGEQGHTSFNCPTPTKRRKPCFICGSLEHGAKQCSKGHD--CYICKKTGHRAKDC 223
Query: 115 PGQTAGKSPEPVVDMSLTCYVCGHQGHLSYDCK 147
P + S V C CG GH CK
Sbjct: 224 PDKYKNGSKGAV------CLRCGDFGHDMILCK 250
Score = 133 (51.9 bits), Expect = 6.6e-08, P = 6.6e-08
Identities = 23/56 (41%), Positives = 32/56 (57%)
Query: 2 SSTSTIQCYNCFDFGHYQYSCPQKSS-ADARGDKVGIVCYKCNNYGHFARECATES 56
+S +CY C + GH+ CP SS + + G + +CY+CN GHFAREC S
Sbjct: 320 NSREASECYRCGEEGHFARECPNSSSISTSHGRESQTLCYRCNGSGHFARECPNSS 375
>WB|WBGene00001601 [details] [associations]
symbol:glh-4 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0042127 "regulation of cell
proliferation" evidence=IMP] [GO:0007276 "gamete generation"
evidence=IMP] [GO:0043186 "P granule" evidence=IDA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0003724 "RNA helicase activity"
evidence=ISS] [GO:0008432 "JUN kinase binding" evidence=IPI]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR001878
InterPro:IPR011545 Pfam:PF00098 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS50158 PROSITE:PS51194 SMART:SM00343
SMART:SM00490 GO:GO:0005524 GO:GO:0046872 GO:GO:0008270
GO:GO:0003723 GO:GO:0042127 Gene3D:4.10.60.10 SUPFAM:SSF57756
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0007276
GO:GO:0008026 eggNOG:COG0513 GO:GO:0003724 InterPro:IPR014014
PROSITE:PS51195 GO:GO:0043186 GeneTree:ENSGT00620000087942
EMBL:AF079508 EMBL:FO081191 PIR:T32759 PIR:T43326
RefSeq:NP_491207.3 ProteinModelPortal:O76743 SMR:O76743
IntAct:O76743 STRING:O76743 PaxDb:O76743 PRIDE:O76743
EnsemblMetazoa:T12F5.3.1 EnsemblMetazoa:T12F5.3.2 GeneID:171941
KEGG:cel:CELE_T12F5.3 UCSC:T12F5.3.1 CTD:171941 WormBase:T12F5.3
InParanoid:O76743 NextBio:873335 Uniprot:O76743
Length = 1156
Score = 182 (69.1 bits), Expect = 1.0e-12, P = 1.0e-12
Identities = 41/116 (35%), Positives = 49/116 (42%)
Query: 39 CYKCNNYGHFARECATESVT---CYNCSGQGHVAKDCTVKSSII--CYNCNSSGHFARNC 93
C+ C GH ++EC V C NC GH A DC C NC GHFA +C
Sbjct: 572 CHNCGEEGHISKECDKPKVPRFPCRNCEQLGHFASDCDQPRVPRGPCRNCGIEGHFAVDC 631
Query: 94 PNDSSKR--CYACHQAGHMAKECPGQTAGKSP-EPVVDMSLTCYVCGHQGHLSYDC 146
R C C Q GH AK+C + P EP C C +GH Y+C
Sbjct: 632 DQPKVPRGPCRNCGQEGHFAKDCQNERVRMEPTEP-------CRRCAEEGHWGYEC 680
Score = 168 (64.2 bits), Expect = 3.2e-11, P = 3.2e-11
Identities = 40/118 (33%), Positives = 51/118 (43%)
Query: 9 CYNCFDFGHYQYSCPQKSSADARGDKVG-IVCYKCNNYGHFARECATESVT---CYNCSG 64
C+NC + GH C + KV C C GHFA +C V C NC
Sbjct: 572 CHNCGEEGHISKECDKP--------KVPRFPCRNCEQLGHFASDCDQPRVPRGPCRNCGI 623
Query: 65 QGHVAKDCTVKSSII--CYNCNSSGHFARNCPNDS-----SKRCYACHQAGHMAKECP 115
+GH A DC C NC GHFA++C N+ ++ C C + GH ECP
Sbjct: 624 EGHFAVDCDQPKVPRGPCRNCGQEGHFAKDCQNERVRMEPTEPCRRCAEEGHWGYECP 681
Score = 144 (55.7 bits), Expect = 1.2e-08, P = 1.2e-08
Identities = 30/93 (32%), Positives = 41/93 (44%)
Query: 59 CYNCSGQGHVAKDCTVKS--SIICYNCNSSGHFARNCPNDSSKR--CYACHQAGHMAKEC 114
C+NC +GH++K+C C NC GHFA +C R C C GH A +C
Sbjct: 572 CHNCGEEGHISKECDKPKVPRFPCRNCEQLGHFASDCDQPRVPRGPCRNCGIEGHFAVDC 631
Query: 115 PGQTAGKSPEPVVDMSLTCYVCGHQGHLSYDCK 147
+ P C CG +GH + DC+
Sbjct: 632 DQPKVPRGP---------CRNCGQEGHFAKDCQ 655
>ZFIN|ZDB-GENE-030102-2 [details] [associations]
symbol:zcchc7 "zinc finger, CCHC domain containing 7"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0046872 "metal ion binding" evidence=IEA] InterPro:IPR001878
Pfam:PF00098 PROSITE:PS50158 SMART:SM00343 ZFIN:ZDB-GENE-030102-2
GO:GO:0046872 GO:GO:0008270 GO:GO:0003676 Gene3D:4.10.60.10
SUPFAM:SSF57756 GeneTree:ENSGT00510000048226 EMBL:BX511134
EMBL:BX284619 EMBL:CR786570 IPI:IPI00996291
Ensembl:ENSDART00000129066 ArrayExpress:F1QLY2 Bgee:F1QLY2
Uniprot:F1QLY2
Length = 627
Score = 175 (66.7 bits), Expect = 2.5e-12, P = 2.5e-12
Identities = 45/150 (30%), Positives = 66/150 (44%)
Query: 13 FDFGHYQYSCPQKSSADARGDKVGIVCYKCNNYGHFARECAT-ESVTCYN-CSGQGHVAK 70
++ GH P +S+ +K I C CN GH ++ C T + V C + C +GH+ +
Sbjct: 251 YNKGHGPRHVPNRSTYRYYTEK-SITCRNCNKTGHLSKNCPTLKKVPCCSLCGLRGHLLR 309
Query: 71 DCTVKSSIICYNCNSSGHFARNCPNDSS--KRCYACHQAGHMAKECPG--------QTAG 120
C + C NC+ GH + +C + KRC+ C GH CP TAG
Sbjct: 310 TCPNRH---CSNCSLPGHTSDDCLERAFWYKRCHRCGMTGHFIDACPQIWRQYHLTTTAG 366
Query: 121 ---KSPEP-VVDMSLTCYVCGHQGHLSYDC 146
KS +P CY C +GH + C
Sbjct: 367 PIRKSADPKACQKRAYCYNCSRKGHFGHQC 396
Score = 129 (50.5 bits), Expect = 2.1e-07, P = 2.1e-07
Identities = 38/138 (27%), Positives = 50/138 (36%)
Query: 6 TIQCYNCFDFGHYQYSCPQKSSADARGDKVGIVCYKCNNYGHFARECATESVTCYNCSGQ 65
+I C NC GH +CP C C GH R C C NCS
Sbjct: 273 SITCRNCNKTGHLSKNCPTLKKVPC--------CSLCGLRGHLLRTCPNRH--CSNCSLP 322
Query: 66 GHVAKDCTVKSSII--CYNCNSSGHFARNCPNDSSKRCYACHQAGHMAKECPGQTAGKSP 123
GH + DC ++ C+ C +GHF CP ++ + AG + K + K
Sbjct: 323 GHTSDDCLERAFWYKRCHRCGMTGHFIDACPQ-IWRQYHLTTTAGPIRKSADPKACQKRA 381
Query: 124 EPVVDMSLTCYVCGHQGH 141
C GH GH
Sbjct: 382 -----YCYNCSRKGHFGH 394
>SGD|S000001341 [details] [associations]
symbol:AIR1 "Zinc knuckle protein" species:4932
"Saccharomyces cerevisiae" [GO:0071036 "nuclear
polyadenylation-dependent snoRNA catabolic process" evidence=IGI]
[GO:0071039 "nuclear polyadenylation-dependent CUT catabolic
process" evidence=IGI] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0071035 "nuclear polyadenylation-dependent rRNA
catabolic process" evidence=IGI] [GO:0004652 "polynucleotide
adenylyltransferase activity" evidence=IGI;IDA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0031499 "TRAMP complex" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0071031 "nuclear mRNA surveillance of mRNA 3'-end
processing" evidence=IGI] [GO:0043629 "ncRNA polyadenylation"
evidence=IDA] [GO:0071038 "nuclear polyadenylation-dependent tRNA
catabolic process" evidence=IDA] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0071037 "nuclear polyadenylation-dependent snRNA
catabolic process" evidence=IGI] [GO:0008270 "zinc ion binding"
evidence=IEA] InterPro:IPR001878 Pfam:PF00098 PROSITE:PS50158
SMART:SM00343 SGD:S000001341 GO:GO:0005737 GO:GO:0005730
GO:GO:0046872 EMBL:BK006942 GO:GO:0008270 GO:GO:0003676
eggNOG:COG5082 OrthoDB:EOG4F21BK GO:GO:0031499 Gene3D:4.10.60.10
InterPro:IPR016713 PIRSF:PIRSF018162 SUPFAM:SSF57756 EMBL:Z37997
PIR:S48365 RefSeq:NP_012186.1 ProteinModelPortal:P40507 SMR:P40507
DIP:DIP-2700N IntAct:P40507 MINT:MINT-518330 STRING:P40507
PaxDb:P40507 PeptideAtlas:P40507 EnsemblFungi:YIL079C GeneID:854731
KEGG:sce:YIL079C CYGD:YIL079c GeneTree:ENSGT00510000048226
HOGENOM:HOG000000966 KO:K12597 OMA:HISADCK NextBio:977425
Genevestigator:P40507 GermOnline:YIL079C GO:GO:0043629
GO:GO:0071031 GO:GO:0071039 GO:GO:0071035 GO:GO:0071036
GO:GO:0071037 GO:GO:0071038 Uniprot:P40507
Length = 360
Score = 160 (61.4 bits), Expect = 3.5e-11, P = 3.5e-11
Identities = 36/117 (30%), Positives = 51/117 (43%)
Query: 39 CYKCNNYGHFARECATESVTCYNCSGQG-HVAKDCTVKSSIICYNCNSSGHFARNCPNDS 97
C C+ GH R C V C C H ++ C +IIC NCN++GH+ CP+
Sbjct: 76 CNNCSQRGHLKRNCP--HVICTYCGFMDDHYSQHCP--KAIICTNCNANGHYKSQCPHKW 131
Query: 98 SKR-CYACHQAGHMAKECPG-------QTAGKSPEPVVDMSLTCYVCGHQGHLSYDC 146
K C C+ H + CP +T + ++ CY CG+ GH DC
Sbjct: 132 KKVFCTLCNSKRHSRERCPSIWRSYLLKTKDANQGDFDFQTVFCYNCGNAGHFGDDC 188
Score = 108 (43.1 bits), Expect = 8.5e-05, P = 8.5e-05
Identities = 34/138 (24%), Positives = 55/138 (39%)
Query: 8 QCYNCFDFGHYQYSCPQK--SSADARGDKVG------IVCYKCNNYGHFARECATE--SV 57
+C NC GH + +CP + D I+C CN GH+ +C + V
Sbjct: 75 KCNNCSQRGHLKRNCPHVICTYCGFMDDHYSQHCPKAIICTNCNANGHYKSQCPHKWKKV 134
Query: 58 TCYNCSGQGHVAKDCTV--KSSIICYNCNSSGHFARNCPNDSSKRCYACHQAGHMAKECP 115
C C+ + H + C +S ++ + G F + + CY C AGH +C
Sbjct: 135 FCTLCNSKRHSRERCPSIWRSYLLKTKDANQGDF-----DFQTVFCYNCGNAGHFGDDCA 189
Query: 116 GQTAGKSPEPVVDMSLTC 133
+ + + P D S C
Sbjct: 190 ERRSSRVPN--TDGSAFC 205
Score = 104 (41.7 bits), Expect = 0.00051, P = 0.00051
Identities = 28/94 (29%), Positives = 39/94 (41%)
Query: 7 IQCYNCFDFGHYQYSCPQKSSADARGDKVGIVCYKCNNYGHFARECATESVTCYNCSGQG 66
I C NC GHY+ CP K + C CN+ H +RE Y +
Sbjct: 112 IICTNCNANGHYKSQCPHKWKK--------VFCTLCNSKRH-SRERCPSIWRSYLLKTKD 162
Query: 67 HVAKDCTVKSSIICYNCNSSGHFARNCPNDSSKR 100
D ++ + CYNC ++GHF +C S R
Sbjct: 163 ANQGDFDFQT-VFCYNCGNAGHFGDDCAERRSSR 195
>POMBASE|SPBP35G2.08c [details] [associations]
symbol:air1 "zinc knuckle TRAMP complex subunit Air1"
species:4896 "Schizosaccharomyces pombe" [GO:0005634 "nucleus"
evidence=ISO] [GO:0005730 "nucleolus" evidence=ISO] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0016075 "rRNA catabolic
process" evidence=ISO] [GO:0016076 "snRNA catabolic process"
evidence=ISO] [GO:0016077 "snoRNA catabolic process" evidence=ISO]
[GO:0016078 "tRNA catabolic process" evidence=ISO] [GO:0031499
"TRAMP complex" evidence=IDA] [GO:0043630 "ncRNA polyadenylation
involved in polyadenylation-dependent ncRNA catabolic process"
evidence=ISO] InterPro:IPR001878 Pfam:PF00098 PROSITE:PS50158
SMART:SM00343 PomBase:SPBP35G2.08c GO:GO:0005730 GO:GO:0046872
EMBL:CU329671 GO:GO:0008270 GenomeReviews:CU329671_GR GO:GO:0003676
RefSeq:NP_595383.2 HSSP:Q9H9Z2 STRING:Q9P795
EnsemblFungi:SPBP35G2.08c.1 GeneID:2541349 eggNOG:COG5082
OrthoDB:EOG4F21BK NextBio:20802458 GO:GO:0031499 GO:GO:0043630
GO:GO:0016075 GO:GO:0016077 GO:GO:0016076 GO:GO:0016078
Gene3D:4.10.60.10 InterPro:IPR016713 PIRSF:PIRSF018162
SUPFAM:SSF57756 Uniprot:Q9P795
Length = 315
Score = 154 (59.3 bits), Expect = 1.1e-10, P = 1.1e-10
Identities = 39/126 (30%), Positives = 51/126 (40%)
Query: 37 IVCYKCNNYGHFARECATESVTCYNCSG-QGHVAKDCTVKSSIICYNCNSSGHFARNC-- 93
IVC+ C GH +++C V C C H++ C C NC GH A C
Sbjct: 89 IVCHNCKGNGHISKDCP--HVLCTTCGAIDDHISVRCPWTKK--CMNCGLLGHIAARCSE 144
Query: 94 PNDSSKR-CYACHQAGHMAKECP--GQTAGKSPEPV-VDMSLT---CYVCGHQGHLSYDC 146
P R C CH H + CP + + PV +D+S CY C H DC
Sbjct: 145 PRKRGPRVCRTCHTDTHTSSTCPLIWRYYVEKEHPVRIDVSEVRKFCYNCASDEHFGDDC 204
Query: 147 KLVQKS 152
L +S
Sbjct: 205 TLPSRS 210
Score = 144 (55.7 bits), Expect = 1.4e-09, P = 1.4e-09
Identities = 31/105 (29%), Positives = 47/105 (44%)
Query: 46 GHFARECATESVTCYNCSGQGHVAKDCTVKSSIICYNCNS-SGHFARNCPNDSSKRCYAC 104
G + +ES+ C+NC G GH++KDC ++C C + H + CP +K+C C
Sbjct: 78 GRYFGSDPSESIVCHNCKGNGHISKDCP---HVLCTTCGAIDDHISVRCP--WTKKCMNC 132
Query: 105 HQAGHMAKECPGQTAGKSPEPVVDMSLTCYVCGHQGHLSYDCKLV 149
GH+A C + + P C C H S C L+
Sbjct: 133 GLLGHIAARC-SEPRKRGPR-------VCRTCHTDTHTSSTCPLI 169
Score = 104 (41.7 bits), Expect = 0.00040, P = 0.00040
Identities = 35/142 (24%), Positives = 49/142 (34%)
Query: 4 TSTIQCYNCFDFGHYQYSCPQK--SSADARGDKVGIVC---YKCNN---YGHFARECATE 55
+ +I C+NC GH CP ++ A D + + C KC N GH A C+
Sbjct: 86 SESIVCHNCKGNGHISKDCPHVLCTTCGAIDDHISVRCPWTKKCMNCGLLGHIAARCSEP 145
Query: 56 SV----TCYNCSGQGHVAKDCTVKSSIICYNCNSSGHFARNCPNDSSKRCYACHQAGHMA 111
C C H + C + I Y H R ++ K CY C H
Sbjct: 146 RKRGPRVCRTCHTDTHTSSTCPL---IWRYYVEKE-HPVRIDVSEVRKFCYNCASDEHFG 201
Query: 112 KECPGQTAGKSPEPVVDMSLTC 133
+C + PE C
Sbjct: 202 DDCTLPSRSNYPESTAFCEANC 223
>UNIPROTKB|G4MQ81 [details] [associations]
symbol:MGG_09256 "Uncharacterized protein" species:242507
"Magnaporthe oryzae 70-15" [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR001878 PROSITE:PS50158 SMART:SM00343 GO:GO:0008270
GO:GO:0003676 Gene3D:4.10.60.10 SUPFAM:SSF57756 KO:K12597
EMBL:CM001231 RefSeq:XP_003709886.1 ProteinModelPortal:G4MQ81
EnsemblFungi:MGG_09256T0 GeneID:2680192 KEGG:mgr:MGG_09256
Uniprot:G4MQ81
Length = 695
Score = 144 (55.7 bits), Expect = 1.7e-10, Sum P(2) = 1.7e-10
Identities = 33/122 (27%), Positives = 46/122 (37%)
Query: 39 CYKCNNYGHFARECATESVTCYNCSGQGHVAKDCTVKSSIICYNCNSSGHFARNCPN--- 95
C C GH A +C TC +C Q H + C + + C C GH ++CP
Sbjct: 401 CVICAKNGHRANDCPPP--TCRHCQNQDHTSAQCPKR--VRCTKCQHLGHIKKSCPEKLA 456
Query: 96 ----DSSKRCYACHQAGHMAKECPGQTAGKSPEP-----VVDMSLTCYVCGHQGHLSYDC 146
++ C C H+ +C P+P V + CY CG H DC
Sbjct: 457 SAAGEAELECAVCCATDHLEDDCESLWCTYYPDPENIVKVQSIPAFCYSCGADNHFGGDC 516
Query: 147 KL 148
L
Sbjct: 517 GL 518
Score = 139 (54.0 bits), Expect = 5.7e-10, Sum P(2) = 5.7e-10
Identities = 33/101 (32%), Positives = 44/101 (43%)
Query: 47 HFARECATESVTCYNCSGQGHVAKDCTVKSSIICYNCNSSGHFARNCPNDSSKRCYACHQ 106
+F R T+ C C+ GH A DC + C +C + H + CP RC C
Sbjct: 391 YFPRASKTDF--CVICAKNGHRANDCPPPT---CRHCQNQDHTSAQCPK--RVRCTKCQH 443
Query: 107 AGHMAKECPGQTAGKSPEPVVDMSLTCYVCGHQGHLSYDCK 147
GH+ K CP + A + E L C VC HL DC+
Sbjct: 444 LGHIKKSCPEKLASAAGEA----ELECAVCCATDHLEDDCE 480
Score = 110 (43.8 bits), Expect = 5.3e-05, P = 5.3e-05
Identities = 25/87 (28%), Positives = 41/87 (47%)
Query: 7 IQCYNCFDFGHYQYSCPQKSSADARGDKVGIVCYKCNNYGHFARECATESVTCYNCSGQG 66
++C C GH + SCP+K A A G+ + C C H +C ES+ C
Sbjct: 436 VRCTKCQHLGHIKKSCPEKL-ASAAGE-AELECAVCCATDHLEDDC--ESLWCTYYPDPE 491
Query: 67 HVAKDCTVKSSIICYNCNSSGHFARNC 93
++ K ++ + CY+C + HF +C
Sbjct: 492 NIVKVQSIPA--FCYSCGADNHFGGDC 516
Score = 38 (18.4 bits), Expect = 1.7e-10, Sum P(2) = 1.7e-10
Identities = 7/13 (53%), Positives = 9/13 (69%)
Query: 25 KSSADARGDKVGI 37
+S ADA DK G+
Sbjct: 192 ESKADASNDKAGV 204
>POMBASE|SPAC683.02c [details] [associations]
symbol:SPAC683.02c "zf-CCHC type zinc finger protein"
species:4896 "Schizosaccharomyces pombe" [GO:0005730 "nucleolus"
evidence=IDA] [GO:0008150 "biological_process" evidence=ND]
[GO:0008270 "zinc ion binding" evidence=IEA] InterPro:IPR001878
Pfam:PF00098 PROSITE:PS50158 SMART:SM00343 PomBase:SPAC683.02c
EMBL:CU329670 GO:GO:0005730 GO:GO:0046872 GO:GO:0008270
GO:GO:0003676 eggNOG:COG5082 Gene3D:4.10.60.10 SUPFAM:SSF57756
PIR:T50246 RefSeq:NP_594481.1 EnsemblFungi:SPAC683.02c.1
GeneID:2543491 KEGG:spo:SPAC683.02c HOGENOM:HOG000059608
OMA:FICHENG OrthoDB:EOG4P8JTN NextBio:20804503 Uniprot:Q9HFF2
Length = 218
Score = 147 (56.8 bits), Expect = 2.0e-10, P = 2.0e-10
Identities = 30/98 (30%), Positives = 44/98 (44%)
Query: 59 CYNCSGQGHVAKDCT-VKSSI-ICYNCNSSGHFARNCPNDSS---KRCYACHQAGHMAKE 113
C+ C QGH+ +DC K ++ IC+ C S H C +C+ CH+ GH++ +
Sbjct: 79 CFACRQQGHIVQDCPEAKDNVSICFRCGSKEHSLNACSKKGPLKFAKCFICHENGHLSGQ 138
Query: 114 CPGQTAGKSPEPVVDMSLTCYVCGHQGHLSYDCKLVQK 151
C G P+ C C HL+ DC V K
Sbjct: 139 CEQNPKGLYPK-----GGCCKFCSSVHHLAKDCDQVNK 171
Score = 117 (46.2 bits), Expect = 5.2e-07, P = 5.2e-07
Identities = 24/88 (27%), Positives = 41/88 (46%)
Query: 39 CYKCNNYGHFAREC--ATESVT-CYNCSGQGHVAKDCTVKSSII---CYNCNSSGHFARN 92
C+ C GH ++C A ++V+ C+ C + H C+ K + C+ C+ +GH +
Sbjct: 79 CFACRQQGHIVQDCPEAKDNVSICFRCGSKEHSLNACSKKGPLKFAKCFICHENGHLSGQ 138
Query: 93 C---PNDSSKR---CYACHQAGHMAKEC 114
C P + C C H+AK+C
Sbjct: 139 CEQNPKGLYPKGGCCKFCSSVHHLAKDC 166
>WB|WBGene00017210 [details] [associations]
symbol:F07E5.5 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0040011 "locomotion" evidence=IMP]
[GO:0040010 "positive regulation of growth rate" evidence=IMP]
[GO:0040035 "hermaphrodite genitalia development" evidence=IMP]
[GO:0000003 "reproduction" evidence=IMP] [GO:0006898
"receptor-mediated endocytosis" evidence=IMP] InterPro:IPR001878
Pfam:PF00098 PROSITE:PS50158 SMART:SM00343 GO:GO:0006898
GO:GO:0040010 GO:GO:0046872 GO:GO:0008270 GO:GO:0040011
GO:GO:0003676 GO:GO:0040035 eggNOG:COG5082 Gene3D:4.10.60.10
SUPFAM:SSF57756 EMBL:FO080110 PIR:T34410 RefSeq:NP_494168.1
ProteinModelPortal:P91223 SMR:P91223 STRING:P91223 PaxDb:P91223
EnsemblMetazoa:F07E5.5 GeneID:173564 KEGG:cel:CELE_F07E5.5
UCSC:F07E5.5 CTD:173564 WormBase:F07E5.5
GeneTree:ENSGT00510000047308 HOGENOM:HOG000021839 InParanoid:P91223
OMA:INDWRAA NextBio:880195 Uniprot:P91223
Length = 384
Score = 148 (57.2 bits), Expect = 8.4e-10, P = 8.4e-10
Identities = 31/109 (28%), Positives = 55/109 (50%)
Query: 9 CYNCFDFGHYQYSCPQKSSADARGDKVGIVCYKCNNYGHFARECATESV------TCYNC 62
C++C + GH CP+++S+ + G VC+KC + H EC + V TC+ C
Sbjct: 231 CFHCREPGHRLADCPKRNSSSSDG-----VCFKCGSMEHSIHECKKKGVKGFPYATCFVC 285
Query: 63 SGQGHVAKDCTVKSSII-----CYN-CNSSGHFARNCPNDSSKRCYACH 105
GH+++DC + + C N C ++ H R+CP ++++ H
Sbjct: 286 KQVGHISRDCHQNVNGVYPDGGCCNVCGANTHLRRDCPELAAQKAGGAH 334
Score = 134 (52.2 bits), Expect = 2.8e-08, P = 2.8e-08
Identities = 29/97 (29%), Positives = 41/97 (42%)
Query: 59 CYNCSGQGHVAKDCTVKSSI----ICYNCNSSGHFARNCPNDSSK-----RCYACHQAGH 109
C++C GH DC ++S +C+ C S H C K C+ C Q GH
Sbjct: 231 CFHCREPGHRLADCPKRNSSSSDGVCFKCGSMEHSIHECKKKGVKGFPYATCFVCKQVGH 290
Query: 110 MAKECPGQTAGKSPEPVVDMSLTCYVCGHQGHLSYDC 146
++++C G P+ C VCG HL DC
Sbjct: 291 ISRDCHQNVNGVYPD-----GGCCNVCGANTHLRRDC 322
>SGD|S000002334 [details] [associations]
symbol:AIR2 "RNA-binding subunit of the TRAMP nuclear RNA
surveillance complex" species:4932 "Saccharomyces cerevisiae"
[GO:0030674 "protein binding, bridging" evidence=IMP] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IDA] [GO:0031499 "TRAMP complex" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] [GO:0004652 "polynucleotide
adenylyltransferase activity" evidence=IGI;IDA] [GO:0043629 "ncRNA
polyadenylation" evidence=IDA] [GO:0071039 "nuclear
polyadenylation-dependent CUT catabolic process" evidence=IGI]
[GO:0071036 "nuclear polyadenylation-dependent snoRNA catabolic
process" evidence=IGI] [GO:0071037 "nuclear
polyadenylation-dependent snRNA catabolic process" evidence=IGI]
[GO:0071031 "nuclear mRNA surveillance of mRNA 3'-end processing"
evidence=IGI] [GO:0071038 "nuclear polyadenylation-dependent tRNA
catabolic process" evidence=IDA] [GO:0071035 "nuclear
polyadenylation-dependent rRNA catabolic process" evidence=IGI]
[GO:0006400 "tRNA modification" evidence=IMP] [GO:0046872 "metal
ion binding" evidence=IEA] InterPro:IPR001878 Pfam:PF00098
PROSITE:PS50158 SMART:SM00343 SGD:S000002334 GO:GO:0005730
GO:GO:0046872 GO:GO:0008270 EMBL:BK006938 GO:GO:0030674
GO:GO:0003723 GO:GO:0006400 eggNOG:COG5082 OrthoDB:EOG4F21BK
GO:GO:0031499 Gene3D:4.10.60.10 InterPro:IPR016713
PIRSF:PIRSF018162 SUPFAM:SSF57756 GeneTree:ENSGT00510000048226
HOGENOM:HOG000000966 KO:K12597 GO:GO:0043629 GO:GO:0071031
GO:GO:0071039 GO:GO:0071035 GO:GO:0071036 GO:GO:0071037
GO:GO:0071038 EMBL:Z74223 EMBL:Z67750 PIR:S61037 RefSeq:NP_010106.1
PDB:2LLI PDB:3NYB PDBsum:2LLI PDBsum:3NYB ProteinModelPortal:Q12476
SMR:Q12476 DIP:DIP-2543N IntAct:Q12476 MINT:MINT-543316
STRING:Q12476 PaxDb:Q12476 PeptideAtlas:Q12476 EnsemblFungi:YDL175C
GeneID:851379 KEGG:sce:YDL175C CYGD:YDL175c
EvolutionaryTrace:Q12476 NextBio:968516 Genevestigator:Q12476
GermOnline:YDL175C Uniprot:Q12476
Length = 344
Score = 146 (56.5 bits), Expect = 1.1e-09, P = 1.1e-09
Identities = 32/120 (26%), Positives = 49/120 (40%)
Query: 39 CYKCNNYGHFARECATESVTCYNCSG-QGHVAKDCTVKSSIICYNCNSSGHFARNCPNDS 97
C C+ GH ++C + C C H ++ C +I C C+ GH+ CP+
Sbjct: 63 CNNCSQRGHLKKDCP--HIICSYCGATDDHYSRHCP--KAIQCSKCDEVGHYRSQCPHKW 118
Query: 98 SK-RCYACHQAGHMAKECPG---------QTAGKSPEPVVDMSLTCYVCGHQGHLSYDCK 147
K +C C H + CP P+ + ++ CY CG +GH DCK
Sbjct: 119 KKVQCTLCKSKKHSKERCPSIWRAYILVDDNEKAKPKVLPFHTIYCYNCGGKGHFGDDCK 178
Score = 106 (42.4 bits), Expect = 0.00021, P = 0.00021
Identities = 32/127 (25%), Positives = 50/127 (39%)
Query: 8 QCYNCFDFGHYQYSCPQK--SSADARGDKVG------IVCYKCNNYGHFARECATE--SV 57
+C NC GH + CP S A D I C KC+ GH+ +C + V
Sbjct: 62 KCNNCSQRGHLKKDCPHIICSYCGATDDHYSRHCPKAIQCSKCDEVGHYRSQCPHKWKKV 121
Query: 58 TCYNCSGQGHVAKDC-TVKSSIICYNCNSSGHFARNCPNDSSKRCYACHQAGHMAKECPG 116
C C + H + C ++ + I + N + P + CY C GH +C
Sbjct: 122 QCTLCKSKKHSKERCPSIWRAYILVDDNEKAK-PKVLPFHTIY-CYNCGGKGHFGDDCKE 179
Query: 117 QTAGKSP 123
+ + + P
Sbjct: 180 KRSSRVP 186
>TAIR|locus:2183607 [details] [associations]
symbol:AT5G36240 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA;ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR001878 Pfam:PF00098 PROSITE:PS50158 SMART:SM00343
EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0046872 GO:GO:0008270
GO:GO:0003676 Gene3D:4.10.60.10 SUPFAM:SSF57756 EMBL:AB026661
IPI:IPI00533303 RefSeq:NP_198473.1 UniGene:At.55159
ProteinModelPortal:Q9FG62 SMR:Q9FG62 PaxDb:Q9FG62 PRIDE:Q9FG62
EnsemblPlants:AT5G36240.1 GeneID:833621 KEGG:ath:AT5G36240
TAIR:At5g36240 eggNOG:NOG310171 HOGENOM:HOG000152454
InParanoid:Q9FG62 OMA:EGHFEHQ PhylomeDB:Q9FG62
ProtClustDB:CLSN2916402 Genevestigator:Q9FG62 Uniprot:Q9FG62
Length = 254
Score = 141 (54.7 bits), Expect = 1.6e-09, P = 1.6e-09
Identities = 39/148 (26%), Positives = 59/148 (39%)
Query: 6 TIQCYNCFDFGHYQYSCPQKSSADARGDKVGIVCYKCNNYGHFARECATESVTCYNCSGQ 65
T+ CY C GH +C + D V C+ C GHF +C C+ +
Sbjct: 76 TVSCYRCGQLGHTGLACGRHYD-----DSVSPSCFICGREGHFEHQCHNSFSVCFP---E 127
Query: 66 GHVAKDCT-VKSSIICYNCNS----SGHFARNCPNDSSKRCYA--CHQAGHMAKECPGQT 118
+C SS + + N+ GHF CP DSS C+ + G ++ ++
Sbjct: 128 DSSEDECQGPDSSSVRFQENTREEEEGHFEHQCP-DSSSVCFQEISREEGFISLNSSSKS 186
Query: 119 AGKSPEPVVDMSLTCYVCGHQGHLSYDC 146
K E CY C +GH++ DC
Sbjct: 187 TSKGRET----RRLCYECKGKGHIARDC 210
Score = 133 (51.9 bits), Expect = 1.3e-08, P = 1.3e-08
Identities = 33/101 (32%), Positives = 42/101 (41%)
Query: 55 ESVTCYNCSGQGHVAKDCTVKSS------IICYNCNSSGHFARNCPNDSSK---RCYACH 105
E+ C C G GH C + S I CY CNS GH P + CY C
Sbjct: 24 EAEVCLRCGGFGHDMTLCKYEYSHEDLKNIKCYVCNSLGHLCCIEPGHTQSWTVSCYRCG 83
Query: 106 QAGHMAKECPGQTAGKSPEPVVDMSLTCYVCGHQGHLSYDC 146
Q GH C G+ S P +C++CG +GH + C
Sbjct: 84 QLGHTGLAC-GRHYDDSVSP------SCFICGREGHFEHQC 117
Score = 133 (51.9 bits), Expect = 1.3e-08, P = 1.3e-08
Identities = 37/116 (31%), Positives = 44/116 (37%)
Query: 9 CYNCFDFGHYQYSCPQKSSADARGDKVGIVCYKCNNYGHFA--RECATES--VTCYNCSG 64
C C FGH C + S + D I CY CN+ GH T+S V+CY C
Sbjct: 28 CLRCGGFGHDMTLCKYEYSHE---DLKNIKCYVCNSLGHLCCIEPGHTQSWTVSCYRCGQ 84
Query: 65 QGHVAKDCT--VKSSII--CYNCNSSGHFARNCPNDSSKRCYACHQAGHMAKECPG 116
GH C S+ C+ C GHF C N S C EC G
Sbjct: 85 LGHTGLACGRHYDDSVSPSCFICGREGHFEHQCHNSFS----VCFPEDSSEDECQG 136
Score = 117 (46.2 bits), Expect = 8.4e-07, P = 8.4e-07
Identities = 29/101 (28%), Positives = 42/101 (41%)
Query: 38 VCYKCNNYGHFARECATE-------SVTCYNCSGQGH---VAKDCTVKSSIICYNCNSSG 87
VC +C +GH C E ++ CY C+ GH + T ++ CY C G
Sbjct: 27 VCLRCGGFGHDMTLCKYEYSHEDLKNIKCYVCNSLGHLCCIEPGHTQSWTVSCYRCGQLG 86
Query: 88 HFARNCP---NDS-SKRCYACHQAGHMAKECPGQTAGKSPE 124
H C +DS S C+ C + GH +C + PE
Sbjct: 87 HTGLACGRHYDDSVSPSCFICGREGHFEHQCHNSFSVCFPE 127
Score = 109 (43.4 bits), Expect = 2.6e-05, P = 2.6e-05
Identities = 32/105 (30%), Positives = 47/105 (44%)
Query: 8 QCYNCFDFGHYQYSC-PQKSSAD-ARGDKVGIVCYKCNNY----GHFARECATESVTCYN 61
QC+N F C P+ SS D +G V ++ N GHF +C S C+
Sbjct: 116 QCHNSFSV------CFPEDSSEDECQGPDSSSVRFQENTREEEEGHFEHQCPDSSSVCFQ 169
Query: 62 --CSGQGHVAKDCTVKSSI-------ICYNCNSSGHFARNCPNDS 97
+G ++ + + KS+ +CY C GH AR+CPN S
Sbjct: 170 EISREEGFISLNSSSKSTSKGRETRRLCYECKGKGHIARDCPNSS 214
Score = 105 (42.0 bits), Expect = 0.00017, P = 0.00017
Identities = 32/121 (26%), Positives = 50/121 (41%)
Query: 7 IQCYNCFDFGHYQYSCPQKSSADARGDKVGIVCYKCNNYGHFARECAT---ESVT--CYN 61
I+CY C GH C + + + CY+C GH C +SV+ C+
Sbjct: 53 IKCYVCNSLGHL--CCIEPGHTQSWT----VSCYRCGQLGHTGLACGRHYDDSVSPSCFI 106
Query: 62 CSGQGHVAKDCTVKSSIICYNCNSSGHFARNCPNDSSKRCYAC---HQAGHMAKECPGQT 118
C +GH C S +C+ +SS + P+ SS R + GH +CP +
Sbjct: 107 CGREGHFEHQCH-NSFSVCFPEDSSEDECQG-PDSSSVRFQENTREEEEGHFEHQCPDSS 164
Query: 119 A 119
+
Sbjct: 165 S 165
>ASPGD|ASPL0000046912 [details] [associations]
symbol:AN1944 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR001878 PROSITE:PS50158 SMART:SM00343 EMBL:BN001307
GO:GO:0008270 GO:GO:0003676 EMBL:AACD01000029 eggNOG:COG5082
Gene3D:4.10.60.10 SUPFAM:SSF57756 KO:K12597 RefSeq:XP_659548.1
EnsemblFungi:CADANIAT00008604 GeneID:2875623 KEGG:ani:AN1944.2
HOGENOM:HOG000192719 OMA:SASEIPC OrthoDB:EOG498Z8B Uniprot:Q5BBY6
Length = 690
Score = 148 (57.2 bits), Expect = 2.2e-09, P = 2.2e-09
Identities = 31/95 (32%), Positives = 44/95 (46%)
Query: 57 VTCYNCSGQGHVAKDCTVKSSIICYNCNSSGHFARNCPNDSSKRCYACHQAGHMAKECPG 116
+TC C +GH+A+ C + + C N H + CP +RC C GH AK+CP
Sbjct: 360 ITCMECLQEGHLAEVCPTRECVHCGAWNK--HQSSLCPK--FRRCQRCRGRGHDAKDCPS 415
Query: 117 QTAGKSPEPVVDMSLTCYVCGHQGHLSYDCKLVQK 151
+ E + C +CG HL YDC + K
Sbjct: 416 ALKSSASE------IPCDLCGSADHLEYDCDYLWK 444
Score = 118 (46.6 bits), Expect = 3.7e-06, P = 3.7e-06
Identities = 37/122 (30%), Positives = 48/122 (39%)
Query: 37 IVCYKCNNYGHFARECATESVTCYNCSGQG-HVAKDCTVKSSIICYNCNSSGHFARNCPN 95
I C +C GH A C T C +C H + C C C GH A++CP+
Sbjct: 360 ITCMECLQEGHLAEVCPTRE--CVHCGAWNKHQSSLCPKFRR--CQRCRGRGHDAKDCPS 415
Query: 96 --DSSKR---CYACHQAGHMAKEC------PGQTAGKSPEPVVDMSLTCYVCGHQGHLSY 144
SS C C A H+ +C P Q P V +S++C C HL
Sbjct: 416 ALKSSASEIPCDLCGSADHLEYDCDYLWKLPRQDTTSLP---VLVSISCAHCTSNRHLIG 472
Query: 145 DC 146
DC
Sbjct: 473 DC 474
>UNIPROTKB|F1ST82 [details] [associations]
symbol:ZCCHC7 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR001878 Pfam:PF00098 PROSITE:PS50158 SMART:SM00343
GO:GO:0005737 GO:GO:0005730 GO:GO:0046872 GO:GO:0008270
GO:GO:0003676 Gene3D:4.10.60.10 SUPFAM:SSF57756
GeneTree:ENSGT00510000048226 KO:K12597 OMA:EAQIANN EMBL:CU855828
EMBL:CU861930 RefSeq:XP_003122068.1 Ensembl:ENSSSCT00000005885
GeneID:100520354 KEGG:ssc:100520354 Uniprot:F1ST82
Length = 545
Score = 145 (56.1 bits), Expect = 3.3e-09, P = 3.3e-09
Identities = 39/124 (31%), Positives = 53/124 (42%)
Query: 37 IVCYKCNNYGHFARECA-TESVT-CYNCSGQGHVAKDCTVKSSIICYNCNSSGHFARNCP 94
+ C CN GH ++ C + V C CS +GH+ C + + C SS H P
Sbjct: 241 VTCRNCNKCGHLSKNCPFPQKVRPCCLCSERGHLQYACPARFCLDCSLPMSSAHRCLERP 300
Query: 95 NDSSKRCYACHQAGHMAKECPG--------QTAG--KSPE-PVVDMSLT-CYVCGHQGHL 142
+ KRC C GH A CP G K P+ P +L CY CG +GH
Sbjct: 301 S-WRKRCDRCDMIGHYADACPEIWRQYHLTTKPGPPKKPKTPSGQSTLVYCYNCGQEGHY 359
Query: 143 SYDC 146
++C
Sbjct: 360 GHEC 363
Score = 104 (41.7 bits), Expect = 0.00094, P = 0.00094
Identities = 16/46 (34%), Positives = 24/46 (52%)
Query: 73 TVKSSIICYNCNSSGHFARNCPNDSSKR-CYACHQAGHMAKECPGQ 117
+ ++ C NCN GH ++NCP R C C + GH+ CP +
Sbjct: 236 SANKNVTCRNCNKCGHLSKNCPFPQKVRPCCLCSERGHLQYACPAR 281
>UNIPROTKB|E2RIR0 [details] [associations]
symbol:ZCCHC7 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR001878 Pfam:PF00098 PROSITE:PS50158 SMART:SM00343
GO:GO:0005737 GO:GO:0005730 GO:GO:0046872 GO:GO:0008270
GO:GO:0003676 Gene3D:4.10.60.10 SUPFAM:SSF57756
GeneTree:ENSGT00510000048226 OMA:EAQIANN EMBL:AAEX03007966
Ensembl:ENSCAFT00000003709 Uniprot:E2RIR0
Length = 418
Score = 139 (54.0 bits), Expect = 9.4e-09, P = 9.4e-09
Identities = 38/126 (30%), Positives = 52/126 (41%)
Query: 37 IVCYKCNNYGHFARECAT-ESVT-CYNCSGQGHVAKDCTVKSSIICYNCNSSGHFARNCP 94
+ C C+ GH ++ C + V C CS +GH+ C + C C+ C
Sbjct: 241 VTCRNCDKCGHLSKNCPLPQKVRPCCLCSERGHLQYACPAR---FCLGCSLPMSSTHRCL 297
Query: 95 NDSS--KRCYACHQAGHMAKECPG--------QTAG--KSPE-PVVDMSLT-CYVCGHQG 140
SS KRC C GH A CP G K P+ P +L CY CG +G
Sbjct: 298 ERSSWRKRCDRCDMIGHYADACPEIWRQYHLTTKPGPPKKPKTPSGQSALVYCYNCGQEG 357
Query: 141 HLSYDC 146
H ++C
Sbjct: 358 HYGHEC 363
>ZFIN|ZDB-GENE-031030-9 [details] [associations]
symbol:zcchc9 "zinc finger, CCHC domain containing 9"
species:7955 "Danio rerio" [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] [GO:0046872 "metal ion binding"
evidence=IEA] InterPro:IPR001878 Pfam:PF00098 PROSITE:PS50158
SMART:SM00343 ZFIN:ZDB-GENE-031030-9 GO:GO:0046872 GO:GO:0008270
GO:GO:0003676 eggNOG:COG5082 Gene3D:4.10.60.10 SUPFAM:SSF57756
InterPro:IPR025836 Pfam:PF14392 HOGENOM:HOG000059608 CTD:84240
HOVERGEN:HBG056034 OrthoDB:EOG49W2G3 EMBL:BC049028 IPI:IPI00484605
RefSeq:NP_938184.1 UniGene:Dr.79609 ProteinModelPortal:Q7ZUI6
STRING:Q7ZUI6 GeneID:386639 KEGG:dre:386639 InParanoid:Q7ZUI6
NextBio:20813967 ArrayExpress:Q7ZUI6 Uniprot:Q7ZUI6
Length = 256
Score = 134 (52.2 bits), Expect = 1.0e-08, P = 1.0e-08
Identities = 34/111 (30%), Positives = 48/111 (43%)
Query: 56 SVTCYNCSGQGHVAKDCTVKSSI------ICYNCNSSGHFARNC-----P---NDSSKRC 101
++ C+NC GH DC ++ ICY C S+ H + C P N +C
Sbjct: 114 NMICFNCRKPGHGLADCPEANNDEEMGRGICYRCGSTEHEIQRCRAKVDPAMGNYPYAKC 173
Query: 102 YACHQAGHMAKECPGQTAGKSPEPVVDMSLTCYVCGHQGHLSYDCKLVQKS 152
+ C Q GH++K CP +P+ + C VCG H DC Q S
Sbjct: 174 FVCGQTGHLSKACPD-----NPKGLYAAGGCCRVCGSVEHFQKDCPEHQNS 219
Score = 121 (47.7 bits), Expect = 3.0e-07, P = 3.0e-07
Identities = 28/85 (32%), Positives = 37/85 (43%)
Query: 68 VAKDCTVKSSIICYNCNSSGHFARNCP---NDSSKR---CYACHQAGHMAKECPGQTAGK 121
+ + T KS++IC+NC GH +CP ND CY C H + C +
Sbjct: 105 IKRQNTKKSNMICFNCRKPGHGLADCPEANNDEEMGRGICYRCGSTEHEIQRCRAKV--- 161
Query: 122 SPEPVVDMSLTCYVCGHQGHLSYDC 146
P C+VCG GHLS C
Sbjct: 162 DPAMGNYPYAKCFVCGQTGHLSKAC 186
Score = 116 (45.9 bits), Expect = 1.1e-06, P = 1.1e-06
Identities = 35/118 (29%), Positives = 51/118 (43%)
Query: 5 STIQCYNCFDFGHYQYSCPQKSSADARGDKVGIVCYKCNNYGHFARECATESVTCYNCSG 64
S + C+NC GH CP+ ++ + G GI CY+C + H + C + G
Sbjct: 113 SNMICFNCRKPGHGLADCPEANNDEEMGR--GI-CYRCGSTEHEIQRCRAKVDPAM---G 166
Query: 65 QGHVAKDCTVKSSIICYNCNSSGHFARNCPNDSSKRCYA----CHQAG---HMAKECP 115
AK C+ C +GH ++ CP D+ K YA C G H K+CP
Sbjct: 167 NYPYAK---------CFVCGQTGHLSKACP-DNPKGLYAAGGCCRVCGSVEHFQKDCP 214
>WB|WBGene00001598 [details] [associations]
symbol:glh-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006915 "apoptotic process" evidence=IMP] [GO:0009791
"post-embryonic development" evidence=IMP] [GO:0007281 "germ cell
development" evidence=IMP] [GO:0016070 "RNA metabolic process"
evidence=ISS] [GO:0043186 "P granule" evidence=IDA] [GO:0003724
"RNA helicase activity" evidence=IDA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0008432 "JUN kinase binding" evidence=IPI]
[GO:0043621 "protein self-association" evidence=IPI] [GO:0017151
"DEAD/H-box RNA helicase binding" evidence=IPI] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR001878 InterPro:IPR011545
Pfam:PF00098 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS50158 PROSITE:PS51194 SMART:SM00343 SMART:SM00490
GO:GO:0005524 GO:GO:0006915 GO:GO:0046872 GO:GO:0008270
GO:GO:0003723 GO:GO:0009791 GO:GO:0007281 Gene3D:4.10.60.10
SUPFAM:SSF57756 GO:GO:0016070 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 GO:GO:0003724
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0043186
GeneTree:ENSGT00620000087942 EMBL:L19948 EMBL:U62772 EMBL:FO080897
PIR:A48686 PIR:C87818 PIR:T15132 RefSeq:NP_491963.1
ProteinModelPortal:P34689 SMR:P34689 IntAct:P34689 STRING:P34689
PaxDb:P34689 EnsemblMetazoa:T21G5.3 GeneID:172414
KEGG:cel:CELE_T21G5.3 UCSC:T21G5.3 CTD:172414 WormBase:T21G5.3
InParanoid:P34689 OMA:HRSNECT NextBio:875417 Uniprot:P34689
Length = 763
Score = 116 (45.9 bits), Expect = 6.8e-06, P = 6.8e-06
Identities = 29/101 (28%), Positives = 42/101 (41%)
Query: 9 CYNCFDFGHYQYSCPQ-KSSADARGDKVGIVCYKCNNYGH--------FARECATESVTC 59
CYNC GH C + + + R G NN G+ F + C
Sbjct: 185 CYNCQQPGHTSRECTEERKPREGRTGGFGGGAGFGNNGGNDGFGGDGGFGGGEERGPMKC 244
Query: 60 YNCSGQGHVAKDCTVKSSIICYNCNSSGHFARNCPNDSSKR 100
+NC G+GH + +C + C+NC GH + CPN + R
Sbjct: 245 FNCKGEGHRSAECP-EPPRGCFNCGEQGHRSNECPNPAKPR 284
Score = 106 (42.4 bits), Expect = 0.00064, P = 0.00064
Identities = 34/122 (27%), Positives = 47/122 (38%)
Query: 39 CYKCNNYGHFARECAT-----ESVTCYNCSGQGHVAKDCTVKSSIICYNCNSSGH---FA 90
C+ C GH + +C E CYNC GH +++CT + G F
Sbjct: 160 CFNCQQPGHRSSDCPEPRKEREPRVCYNCQQPGHTSRECTEERKPREGRTGGFGGGAGFG 219
Query: 91 RNCPNDS---SKRCYACHQAGHM-AKECPGQ--TAGKSPEPVVDMSLTCYVCGHQGHLSY 144
N ND + G M C G+ + + PEP C+ CG QGH S
Sbjct: 220 NNGGNDGFGGDGGFGGGEERGPMKCFNCKGEGHRSAECPEP----PRGCFNCGEQGHRSN 275
Query: 145 DC 146
+C
Sbjct: 276 EC 277
Score = 98 (39.6 bits), Expect = 1.2e-08, Sum P(2) = 1.2e-08
Identities = 14/36 (38%), Positives = 21/36 (58%)
Query: 80 CYNCNSSGHFARNCPNDSSKRCYACHQAGHMAKECP 115
C+NC GH + CP + + C+ C + GH + ECP
Sbjct: 244 CFNCKGEGHRSAECP-EPPRGCFNCGEQGHRSNECP 278
Score = 92 (37.4 bits), Expect = 1.2e-08, Sum P(2) = 1.2e-08
Identities = 18/47 (38%), Positives = 23/47 (48%)
Query: 9 CYNCFDFGHYQYSCPQKSSADARGDKVGIVCYKCNNYGHFARECATE 55
C+NC GH CP+ R ++ VCY C GH +REC E
Sbjct: 160 CFNCQQPGHRSSDCPEP-----RKEREPRVCYNCQQPGHTSRECTEE 201
>UNIPROTKB|P34689 [details] [associations]
symbol:glh-1 "ATP-dependent RNA helicase glh-1"
species:6239 "Caenorhabditis elegans" [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR001878 InterPro:IPR011545 Pfam:PF00098 Pfam:PF00270
Pfam:PF00271 PROSITE:PS00039 PROSITE:PS50158 PROSITE:PS51194
SMART:SM00343 SMART:SM00490 GO:GO:0005524 GO:GO:0006915
GO:GO:0046872 GO:GO:0008270 GO:GO:0003723 GO:GO:0009791
GO:GO:0007281 Gene3D:4.10.60.10 SUPFAM:SSF57756 GO:GO:0016070
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195
GO:GO:0043186 GeneTree:ENSGT00620000087942 EMBL:L19948 EMBL:U62772
EMBL:FO080897 PIR:A48686 PIR:C87818 PIR:T15132 RefSeq:NP_491963.1
ProteinModelPortal:P34689 SMR:P34689 IntAct:P34689 STRING:P34689
PaxDb:P34689 EnsemblMetazoa:T21G5.3 GeneID:172414
KEGG:cel:CELE_T21G5.3 UCSC:T21G5.3 CTD:172414 WormBase:T21G5.3
InParanoid:P34689 OMA:HRSNECT NextBio:875417 Uniprot:P34689
Length = 763
Score = 116 (45.9 bits), Expect = 6.8e-06, P = 6.8e-06
Identities = 29/101 (28%), Positives = 42/101 (41%)
Query: 9 CYNCFDFGHYQYSCPQ-KSSADARGDKVGIVCYKCNNYGH--------FARECATESVTC 59
CYNC GH C + + + R G NN G+ F + C
Sbjct: 185 CYNCQQPGHTSRECTEERKPREGRTGGFGGGAGFGNNGGNDGFGGDGGFGGGEERGPMKC 244
Query: 60 YNCSGQGHVAKDCTVKSSIICYNCNSSGHFARNCPNDSSKR 100
+NC G+GH + +C + C+NC GH + CPN + R
Sbjct: 245 FNCKGEGHRSAECP-EPPRGCFNCGEQGHRSNECPNPAKPR 284
Score = 106 (42.4 bits), Expect = 0.00064, P = 0.00064
Identities = 34/122 (27%), Positives = 47/122 (38%)
Query: 39 CYKCNNYGHFARECAT-----ESVTCYNCSGQGHVAKDCTVKSSIICYNCNSSGH---FA 90
C+ C GH + +C E CYNC GH +++CT + G F
Sbjct: 160 CFNCQQPGHRSSDCPEPRKEREPRVCYNCQQPGHTSRECTEERKPREGRTGGFGGGAGFG 219
Query: 91 RNCPNDS---SKRCYACHQAGHM-AKECPGQ--TAGKSPEPVVDMSLTCYVCGHQGHLSY 144
N ND + G M C G+ + + PEP C+ CG QGH S
Sbjct: 220 NNGGNDGFGGDGGFGGGEERGPMKCFNCKGEGHRSAECPEP----PRGCFNCGEQGHRSN 275
Query: 145 DC 146
+C
Sbjct: 276 EC 277
Score = 98 (39.6 bits), Expect = 1.2e-08, Sum P(2) = 1.2e-08
Identities = 14/36 (38%), Positives = 21/36 (58%)
Query: 80 CYNCNSSGHFARNCPNDSSKRCYACHQAGHMAKECP 115
C+NC GH + CP + + C+ C + GH + ECP
Sbjct: 244 CFNCKGEGHRSAECP-EPPRGCFNCGEQGHRSNECP 278
Score = 92 (37.4 bits), Expect = 1.2e-08, Sum P(2) = 1.2e-08
Identities = 18/47 (38%), Positives = 23/47 (48%)
Query: 9 CYNCFDFGHYQYSCPQKSSADARGDKVGIVCYKCNNYGHFARECATE 55
C+NC GH CP+ R ++ VCY C GH +REC E
Sbjct: 160 CFNCQQPGHRSSDCPEP-----RKEREPRVCYNCQQPGHTSRECTEE 201
>WB|WBGene00043995 [details] [associations]
symbol:F40F12.9 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0016021 "integral to membrane"
evidence=IEA] InterPro:IPR001878 Pfam:PF00098 PROSITE:PS50158
SMART:SM00343 GO:GO:0046872 GO:GO:0008270 GO:GO:0003676
Gene3D:4.10.60.10 SUPFAM:SSF57756 EMBL:Z30215
GeneTree:ENSGT00390000010943 RefSeq:NP_001255048.1
ProteinModelPortal:D5MCP3 SMR:D5MCP3 EnsemblMetazoa:F40F12.9a.1
EnsemblMetazoa:F40F12.9a.2 GeneID:259311 KEGG:cel:CELE_F40F12.9
CTD:259311 WormBase:F40F12.9a Uniprot:D5MCP3
Length = 113
Score = 130 (50.8 bits), Expect = 1.2e-08, P = 1.2e-08
Identities = 20/43 (46%), Positives = 26/43 (60%)
Query: 79 ICYNCNSSGHFARNCPNDSSKRCYACHQAGHMAKECPGQTAGK 121
ICYNC+ GH +R+CP + K C+ C GH +ECP Q K
Sbjct: 28 ICYNCHKLGHMSRDCPEEQPKACFKCGFRGHYYRECPSQIEKK 70
Score = 114 (45.2 bits), Expect = 6.1e-07, P = 6.1e-07
Identities = 17/46 (36%), Positives = 25/46 (54%)
Query: 55 ESVTCYNCSGQGHVAKDCTVKSSIICYNCNSSGHFARNCPNDSSKR 100
E CYNC GH+++DC + C+ C GH+ R CP+ K+
Sbjct: 25 EQSICYNCHKLGHMSRDCPEEQPKACFKCGFRGHYYRECPSQIEKK 70
Score = 94 (38.1 bits), Expect = 8.1e-05, P = 8.1e-05
Identities = 13/36 (36%), Positives = 21/36 (58%)
Query: 38 VCYKCNNYGHFARECATESV-TCYNCSGQGHVAKDC 72
+CY C+ GH +R+C E C+ C +GH ++C
Sbjct: 28 ICYNCHKLGHMSRDCPEEQPKACFKCGFRGHYYREC 63
Score = 89 (36.4 bits), Expect = 0.00027, P = 0.00027
Identities = 16/47 (34%), Positives = 22/47 (46%)
Query: 9 CYNCFDFGHYQYSCPQKSSADARGDKVGIVCYKCNNYGHFARECATE 55
CYNC GH CP++ C+KC GH+ REC ++
Sbjct: 29 CYNCHKLGHMSRDCPEEQPK---------ACFKCGFRGHYYRECPSQ 66
Score = 88 (36.0 bits), Expect = 0.00035, P = 0.00035
Identities = 16/46 (34%), Positives = 25/46 (54%)
Query: 101 CYACHQAGHMAKECPGQTAGKSPEPVVDMSLTCYVCGHQGHLSYDC 146
CY CH+ GHM+++CP + P+ C+ CG +GH +C
Sbjct: 29 CYNCHKLGHMSRDCPEE----QPK-------ACFKCGFRGHYYREC 63
>CGD|CAL0005378 [details] [associations]
symbol:orf19.4844 species:5476 "Candida albicans" [GO:0005730
"nucleolus" evidence=IEA] [GO:0031499 "TRAMP complex" evidence=IEA]
[GO:0071035 "nuclear polyadenylation-dependent rRNA catabolic
process" evidence=IEA] [GO:0071037 "nuclear
polyadenylation-dependent snRNA catabolic process" evidence=IEA]
[GO:0071039 "nuclear polyadenylation-dependent CUT catabolic
process" evidence=IEA] [GO:0043629 "ncRNA polyadenylation"
evidence=IEA] [GO:0006400 "tRNA modification" evidence=IEA]
[GO:0071036 "nuclear polyadenylation-dependent snoRNA catabolic
process" evidence=IEA] [GO:0071031 "nuclear mRNA surveillance of
mRNA 3'-end processing" evidence=IEA] [GO:0071038 "nuclear
polyadenylation-dependent tRNA catabolic process" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004652 "polynucleotide
adenylyltransferase activity" evidence=IEA] [GO:0030674 "protein
binding, bridging" evidence=IEA] InterPro:IPR001878 Pfam:PF00098
PROSITE:PS50158 SMART:SM00343 CGD:CAL0005378 GO:GO:0046872
GO:GO:0008270 GO:GO:0003676 EMBL:AACQ01000001 EMBL:AACQ01000002
eggNOG:COG5082 Gene3D:4.10.60.10 InterPro:IPR016713
PIRSF:PIRSF018162 SUPFAM:SSF57756 KO:K12597 RefSeq:XP_723340.1
RefSeq:XP_723530.1 STRING:Q5APC1 GeneID:3634843 GeneID:3634974
KEGG:cal:CaO19.12307 KEGG:cal:CaO19.4844 Uniprot:Q5APC1
Length = 381
Score = 135 (52.6 bits), Expect = 2.2e-08, P = 2.2e-08
Identities = 36/136 (26%), Positives = 50/136 (36%)
Query: 23 PQKSSADARGDKVGIVCYKCNNYGHFARECATESVTCYNCSG-QGHVAKDCTVKSSIICY 81
P S +R +G +C C GH +C V C+ C H C ++IIC
Sbjct: 73 PDDESGISR-QSLGPLCANCYKRGHTRAKCTV--VICHKCGAIDDHYESQCP--TTIICS 127
Query: 82 NCNSSGHFARNCPNDSSKR--CYACHQAGHMAKECPG---------QTAGKSPEPVVDMS 130
C GH C + KR C C H + CP + G++ E V
Sbjct: 128 RCGEKGHIVSQCKSKIRKRQYCRTCDSFKHGDENCPSIWRSYITKSPSQGENEESSVLPR 187
Query: 131 LTCYVCGHQGHLSYDC 146
+ CY C H +C
Sbjct: 188 IYCYNCASNEHFGDEC 203
>UNIPROTKB|F1MUH8 [details] [associations]
symbol:ZCCHC7 "Zinc finger CCHC domain-containing protein
7" species:9913 "Bos taurus" [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR001878 Pfam:PF00098 PROSITE:PS50158
SMART:SM00343 GO:GO:0005737 GO:GO:0005730 GO:GO:0046872
GO:GO:0008270 GO:GO:0003676 Gene3D:4.10.60.10 SUPFAM:SSF57756
GeneTree:ENSGT00510000048226 IPI:IPI00700472 OMA:EAQIANN
EMBL:DAAA02023167 EMBL:DAAA02023168 EMBL:DAAA02023169
EMBL:DAAA02023170 EMBL:DAAA02023171 EMBL:DAAA02023172
EMBL:DAAA02023173 EMBL:DAAA02023174 Ensembl:ENSBTAT00000028791
Uniprot:F1MUH8
Length = 546
Score = 136 (52.9 bits), Expect = 3.1e-08, P = 3.1e-08
Identities = 37/126 (29%), Positives = 52/126 (41%)
Query: 37 IVCYKCNNYGHFARECA-TESVT-CYNCSGQGHVAKDCTVKSSIICYNCNSSGHFARNCP 94
+ C C+ GH ++ C + V C CS +GH+ C + C C+ C
Sbjct: 241 VTCRNCDKCGHLSKNCPFPQKVRPCCLCSERGHLQYACPAR---FCLGCSLPMSSTHRCL 297
Query: 95 NDSS--KRCYACHQAGHMAKECPG--------QTAG--KSPE-PVVDMSLT-CYVCGHQG 140
+S KRC C GH A CP G K P+ P +L CY CG +G
Sbjct: 298 ERASWRKRCDRCDMIGHYADACPEIWRQYHLTTKPGPPKKPKTPSGQSTLVYCYNCGQEG 357
Query: 141 HLSYDC 146
H ++C
Sbjct: 358 HYGHEC 363
>UNIPROTKB|Q2KIN0 [details] [associations]
symbol:ZCCHC7 "Zinc finger CCHC domain-containing protein
7" species:9913 "Bos taurus" [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR001878 Pfam:PF00098 PROSITE:PS50158 SMART:SM00343
GO:GO:0046872 GO:GO:0008270 GO:GO:0003676 eggNOG:COG5082
Gene3D:4.10.60.10 SUPFAM:SSF57756 KO:K12597 EMBL:BC112578
IPI:IPI00700472 RefSeq:NP_001039565.1 UniGene:Bt.21210
GeneID:511821 KEGG:bta:511821 CTD:84186 HOGENOM:HOG000155768
InParanoid:Q2KIN0 OrthoDB:EOG4P5KBB NextBio:20870113 Uniprot:Q2KIN0
Length = 546
Score = 136 (52.9 bits), Expect = 3.1e-08, P = 3.1e-08
Identities = 37/126 (29%), Positives = 52/126 (41%)
Query: 37 IVCYKCNNYGHFARECA-TESVT-CYNCSGQGHVAKDCTVKSSIICYNCNSSGHFARNCP 94
+ C C+ GH ++ C + V C CS +GH+ C + C C+ C
Sbjct: 241 VTCRNCDKCGHLSKNCPFPQKVRPCCLCSERGHLQYACPAR---FCLGCSLPMSSTHRCL 297
Query: 95 NDSS--KRCYACHQAGHMAKECPG--------QTAG--KSPE-PVVDMSLT-CYVCGHQG 140
+S KRC C GH A CP G K P+ P +L CY CG +G
Sbjct: 298 ERASWRKRCDRCDMIGHYADACPEIWRQYHLTTKPGPPKKPKTPSGQSTLVYCYNCGQEG 357
Query: 141 HLSYDC 146
H ++C
Sbjct: 358 HYGHEC 363
>MGI|MGI:1916335 [details] [associations]
symbol:Zcchc9 "zinc finger, CCHC domain containing 9"
species:10090 "Mus musculus" [GO:0003674 "molecular_function"
evidence=ND] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0010923 "negative regulation of
phosphatase activity" evidence=ISO] [GO:0046872 "metal ion binding"
evidence=IEA] InterPro:IPR001878 Pfam:PF00098 PROSITE:PS50158
SMART:SM00343 MGI:MGI:1916335 GO:GO:0046872 GO:GO:0008270
GO:GO:0003676 eggNOG:COG5082 Gene3D:4.10.60.10 SUPFAM:SSF57756
GO:GO:0010923 HOGENOM:HOG000059608 CTD:84240 HOVERGEN:HBG056034
EMBL:BC010687 EMBL:BC024496 IPI:IPI00122218 RefSeq:NP_663428.2
UniGene:Mm.52356 ProteinModelPortal:Q8R1J3 SMR:Q8R1J3
PhosphoSite:Q8R1J3 PRIDE:Q8R1J3 GeneID:69085 KEGG:mmu:69085
UCSC:uc007rkb.1 InParanoid:Q8R1J3 NextBio:328566 Bgee:Q8R1J3
CleanEx:MM_ZCCHC9 Genevestigator:Q8R1J3
GermOnline:ENSMUSG00000021621 Uniprot:Q8R1J3
Length = 273
Score = 128 (50.1 bits), Expect = 6.0e-08, P = 6.0e-08
Identities = 35/118 (29%), Positives = 54/118 (45%)
Query: 50 RECATES-VTCYNCSGQGHVAKDC--TVKSSI----ICYNCNSSGHFARNC-PN-DSS-- 98
R+ A ++ + C++C GH DC ++S ICY C S+ H C N D +
Sbjct: 120 RQAAKKNAMVCFHCRQPGHGIADCPAVLESQDMGTGICYRCGSTEHEMSKCRANVDPALG 179
Query: 99 ----KRCYACHQAGHMAKECPGQTAGKSPEPVVDMSLTCYVCGHQGHLSYDCKLVQKS 152
+C+ C + GH+++ CP T G V +C +CG H DC+ Q S
Sbjct: 180 EFPFAKCFVCGEMGHLSRSCPDNTKG-----VYADGGSCKLCGSVEHFKKDCRENQNS 232
Score = 101 (40.6 bits), Expect = 0.00089, P = 0.00089
Identities = 32/113 (28%), Positives = 45/113 (39%)
Query: 9 CYNCFDFGHYQYSCPQKSSADARGDKVGIVCYKCNNYGHFARECATESVTCYNCSGQGHV 68
C++C GH CP + G GI CY+C + H +C G+
Sbjct: 130 CFHCRQPGHGIADCPAVLESQDMG--TGI-CYRCGSTEHEMSKCRANVDPAL---GEFPF 183
Query: 69 AKDCTVKSSIICYNCNSSGHFARNCPNDSSKRCYA-------CHQAGHMAKEC 114
AK C+ C GH +R+CP D++K YA C H K+C
Sbjct: 184 AK---------CFVCGEMGHLSRSCP-DNTKGVYADGGSCKLCGSVEHFKKDC 226
>UNIPROTKB|F1M989 [details] [associations]
symbol:Zcchc7 "Zinc finger CCHC domain-containing protein
7" species:10116 "Rattus norvegicus" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR001878 Pfam:PF00098 PROSITE:PS50158 SMART:SM00343
RGD:1310467 GO:GO:0005737 GO:GO:0005730 GO:GO:0046872 GO:GO:0008270
GO:GO:0003676 Gene3D:4.10.60.10 SUPFAM:SSF57756
GeneTree:ENSGT00510000048226 IPI:IPI00768279
Ensembl:ENSRNOT00000017707 ArrayExpress:F1M989 Uniprot:F1M989
Length = 512
Score = 132 (51.5 bits), Expect = 7.6e-08, P = 7.6e-08
Identities = 39/126 (30%), Positives = 53/126 (42%)
Query: 37 IVCYKCNNYGHFARECAT-ESVT-CYNCSGQGHVAKDCTVKSSIICYNCNSSGHFARNCP 94
+ C C+ GH ++ C + V C CS +GH+ C + + C SS H C
Sbjct: 208 VTCRNCDKRGHLSKNCPLPQKVRPCCLCSERGHLQYGCPARYCLDCSLPMSSTH---RCF 264
Query: 95 NDSS--KRCYACHQAGHMAKECPG--------QTAG--KSPE-PVVDMSLT-CYVCGHQG 140
SS KRC C GH A CP G K P+ P +L CY C +G
Sbjct: 265 ERSSWRKRCDRCDMIGHYADACPEIWRQYHLTTKPGPPKKPKTPSGQSALVYCYNCAQKG 324
Query: 141 HLSYDC 146
H ++C
Sbjct: 325 HYGHEC 330
>RGD|1310467 [details] [associations]
symbol:Zcchc7 "zinc finger, CCHC domain containing 7"
species:10116 "Rattus norvegicus" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005730 "nucleolus" evidence=ISO] [GO:0005737 "cytoplasm"
evidence=ISO] [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR001878 Pfam:PF00098 PROSITE:PS50158 SMART:SM00343
RGD:1310467 GO:GO:0005737 GO:GO:0005730 GO:GO:0046872 GO:GO:0008270
GO:GO:0003676 eggNOG:COG5082 Gene3D:4.10.60.10 SUPFAM:SSF57756
KO:K12597 EMBL:CH473962 CTD:84186 HOGENOM:HOG000155768
OrthoDB:EOG4P5KBB EMBL:BC161967 IPI:IPI00768279
RefSeq:NP_001100128.1 UniGene:Rn.56971 ProteinModelPortal:B1WC15
PhosphoSite:B1WC15 PRIDE:B1WC15 GeneID:298086 KEGG:rno:298086
UCSC:RGD:1310467 NextBio:643136 ArrayExpress:B1WC15
Genevestigator:B1WC15 Uniprot:B1WC15
Length = 542
Score = 132 (51.5 bits), Expect = 8.3e-08, P = 8.3e-08
Identities = 39/126 (30%), Positives = 53/126 (42%)
Query: 37 IVCYKCNNYGHFARECAT-ESVT-CYNCSGQGHVAKDCTVKSSIICYNCNSSGHFARNCP 94
+ C C+ GH ++ C + V C CS +GH+ C + + C SS H C
Sbjct: 238 VTCRNCDKRGHLSKNCPLPQKVRPCCLCSERGHLQYGCPARYCLDCSLPMSSTH---RCF 294
Query: 95 NDSS--KRCYACHQAGHMAKECPG--------QTAG--KSPE-PVVDMSLT-CYVCGHQG 140
SS KRC C GH A CP G K P+ P +L CY C +G
Sbjct: 295 ERSSWRKRCDRCDMIGHYADACPEIWRQYHLTTKPGPPKKPKTPSGQSALVYCYNCAQKG 354
Query: 141 HLSYDC 146
H ++C
Sbjct: 355 HYGHEC 360
>WB|WBGene00001599 [details] [associations]
symbol:glh-2 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006915 "apoptotic process" evidence=IMP] [GO:0009791
"post-embryonic development" evidence=IMP] [GO:0007281 "germ cell
development" evidence=IMP] [GO:0016070 "RNA metabolic process"
evidence=ISS] [GO:0043186 "P granule" evidence=IDA] [GO:0003724
"RNA helicase activity" evidence=IDA] [GO:0008432 "JUN kinase
binding" evidence=IPI] [GO:0043621 "protein self-association"
evidence=IPI] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR001878 InterPro:IPR011545 Pfam:PF00098 Pfam:PF00270
Pfam:PF00271 PROSITE:PS00039 PROSITE:PS50158 PROSITE:PS51194
SMART:SM00343 SMART:SM00490 GO:GO:0005524 GO:GO:0006915
GO:GO:0046872 GO:GO:0008270 GO:GO:0003723 GO:GO:0009791
GO:GO:0007281 Gene3D:4.10.60.10 SUPFAM:SSF57756 GO:GO:0016070
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195
EMBL:FO080958 GO:GO:0043186 GeneTree:ENSGT00620000087942
EMBL:U60194 EMBL:U60449 RefSeq:NP_491876.1
ProteinModelPortal:Q966L9 SMR:Q966L9 IntAct:Q966L9 STRING:Q966L9
PaxDb:Q966L9 EnsemblMetazoa:C55B7.1 GeneID:172361
KEGG:cel:CELE_C55B7.1 UCSC:C55B7.1.2 CTD:172361 WormBase:C55B7.1
HOGENOM:HOG000112735 InParanoid:Q966L9 OMA:PREGRNG NextBio:875199
Uniprot:Q966L9
Length = 974
Score = 132 (51.5 bits), Expect = 1.8e-07, P = 1.8e-07
Identities = 35/124 (28%), Positives = 52/124 (41%)
Query: 9 CYNCFDFGHYQYSCPQ-KSSADARGDKVGIVCYKCNNYGHFARECATESVTCYNCSG--- 64
C+NC GH CP+ K + R VCY C GH +R+C E +G
Sbjct: 373 CFNCQQPGHRSNDCPEPKKEREPR------VCYNCQQPGHNSRDCPEERKPREGRNGFTS 426
Query: 65 ----------QGHVAK---DCTVKSSIICYNCNSSGHFARNCPNDSSKRCYACHQAGHMA 111
G A+ + + + C+NC GH + CP + + C+ C + GH +
Sbjct: 427 GFGGGNDGGFGGGNAEGFGNNEERGPMKCFNCKGEGHRSAECP-EPPRGCFNCGEQGHRS 485
Query: 112 KECP 115
ECP
Sbjct: 486 NECP 489
Score = 126 (49.4 bits), Expect = 7.9e-07, P = 7.9e-07
Identities = 29/99 (29%), Positives = 40/99 (40%)
Query: 9 CYNCFDFGHYQYSCPQ--KSSADARGDKVGIVCYKCNNYGH-----FARECATESVTCYN 61
CYNC GH CP+ K G G +G F + C+N
Sbjct: 398 CYNCQQPGHNSRDCPEERKPREGRNGFTSGFGGGNDGGFGGGNAEGFGNNEERGPMKCFN 457
Query: 62 CSGQGHVAKDCTVKSSIICYNCNSSGHFARNCPNDSSKR 100
C G+GH + +C + C+NC GH + CPN + R
Sbjct: 458 CKGEGHRSAECP-EPPRGCFNCGEQGHRSNECPNPAKPR 495
Score = 115 (45.5 bits), Expect = 1.2e-05, P = 1.2e-05
Identities = 34/128 (26%), Positives = 49/128 (38%)
Query: 39 CYKCNNYGHFARECAT-----ESVTCYNCSGQGHVAKDCTVKSS--------IICYNCNS 85
C+ C GH + +C E CYNC GH ++DC + + +
Sbjct: 373 CFNCQQPGHRSNDCPEPKKEREPRVCYNCQQPGHNSRDCPEERKPREGRNGFTSGFGGGN 432
Query: 86 SGHF----ARNCPNDSSK---RCYACHQAGHMAKECPGQTAGKSPEPVVDMSLTCYVCGH 138
G F A N+ + +C+ C GH + ECP G C+ CG
Sbjct: 433 DGGFGGGNAEGFGNNEERGPMKCFNCKGEGHRSAECPEPPRG------------CFNCGE 480
Query: 139 QGHLSYDC 146
QGH S +C
Sbjct: 481 QGHRSNEC 488
Score = 91 (37.1 bits), Expect = 8.0e-07, Sum P(2) = 8.0e-07
Identities = 24/66 (36%), Positives = 30/66 (45%)
Query: 84 NSSGHFARNCPNDSSKR---CYACHQAGHMAKECPGQTAGKSPEPVVDMSLTCYVCGHQG 140
NS+G + D +R C+ C Q GH + +CP K EP V CY C G
Sbjct: 353 NSNGFGSGGGGQDRGERNNNCFNCQQPGHRSNDCPEPK--KEREPRV-----CYNCQQPG 405
Query: 141 HLSYDC 146
H S DC
Sbjct: 406 HNSRDC 411
Score = 87 (35.7 bits), Expect = 8.0e-07, Sum P(2) = 8.0e-07
Identities = 18/48 (37%), Positives = 23/48 (47%)
Query: 9 CYNCFDFGHYQYSCPQ-KSSADARGDKVGIVCYKCNNYGHFARECATE 55
C+NC GH CP+ K + R VCY C GH +R+C E
Sbjct: 259 CFNCQQPGHRSNDCPEPKKEREPR------VCYNCQQPGHNSRDCPEE 300
Score = 80 (33.2 bits), Expect = 4.2e-06, Sum P(2) = 4.2e-06
Identities = 14/39 (35%), Positives = 19/39 (48%)
Query: 39 CYKCNNYGHFARECAT-----ESVTCYNCSGQGHVAKDC 72
C+ C GH + +C E CYNC GH ++DC
Sbjct: 259 CFNCQQPGHRSNDCPEPKKEREPRVCYNCQQPGHNSRDC 297
>UNIPROTKB|Q966L9 [details] [associations]
symbol:glh-2 "ATP-dependent RNA helicase glh-2"
species:6239 "Caenorhabditis elegans" [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR001878 InterPro:IPR011545 Pfam:PF00098 Pfam:PF00270
Pfam:PF00271 PROSITE:PS00039 PROSITE:PS50158 PROSITE:PS51194
SMART:SM00343 SMART:SM00490 GO:GO:0005524 GO:GO:0006915
GO:GO:0046872 GO:GO:0008270 GO:GO:0003723 GO:GO:0009791
GO:GO:0007281 Gene3D:4.10.60.10 SUPFAM:SSF57756 GO:GO:0016070
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195
EMBL:FO080958 GO:GO:0043186 GeneTree:ENSGT00620000087942
EMBL:U60194 EMBL:U60449 RefSeq:NP_491876.1
ProteinModelPortal:Q966L9 SMR:Q966L9 IntAct:Q966L9 STRING:Q966L9
PaxDb:Q966L9 EnsemblMetazoa:C55B7.1 GeneID:172361
KEGG:cel:CELE_C55B7.1 UCSC:C55B7.1.2 CTD:172361 WormBase:C55B7.1
HOGENOM:HOG000112735 InParanoid:Q966L9 OMA:PREGRNG NextBio:875199
Uniprot:Q966L9
Length = 974
Score = 132 (51.5 bits), Expect = 1.8e-07, P = 1.8e-07
Identities = 35/124 (28%), Positives = 52/124 (41%)
Query: 9 CYNCFDFGHYQYSCPQ-KSSADARGDKVGIVCYKCNNYGHFARECATESVTCYNCSG--- 64
C+NC GH CP+ K + R VCY C GH +R+C E +G
Sbjct: 373 CFNCQQPGHRSNDCPEPKKEREPR------VCYNCQQPGHNSRDCPEERKPREGRNGFTS 426
Query: 65 ----------QGHVAK---DCTVKSSIICYNCNSSGHFARNCPNDSSKRCYACHQAGHMA 111
G A+ + + + C+NC GH + CP + + C+ C + GH +
Sbjct: 427 GFGGGNDGGFGGGNAEGFGNNEERGPMKCFNCKGEGHRSAECP-EPPRGCFNCGEQGHRS 485
Query: 112 KECP 115
ECP
Sbjct: 486 NECP 489
Score = 126 (49.4 bits), Expect = 7.9e-07, P = 7.9e-07
Identities = 29/99 (29%), Positives = 40/99 (40%)
Query: 9 CYNCFDFGHYQYSCPQ--KSSADARGDKVGIVCYKCNNYGH-----FARECATESVTCYN 61
CYNC GH CP+ K G G +G F + C+N
Sbjct: 398 CYNCQQPGHNSRDCPEERKPREGRNGFTSGFGGGNDGGFGGGNAEGFGNNEERGPMKCFN 457
Query: 62 CSGQGHVAKDCTVKSSIICYNCNSSGHFARNCPNDSSKR 100
C G+GH + +C + C+NC GH + CPN + R
Sbjct: 458 CKGEGHRSAECP-EPPRGCFNCGEQGHRSNECPNPAKPR 495
Score = 115 (45.5 bits), Expect = 1.2e-05, P = 1.2e-05
Identities = 34/128 (26%), Positives = 49/128 (38%)
Query: 39 CYKCNNYGHFARECAT-----ESVTCYNCSGQGHVAKDCTVKSS--------IICYNCNS 85
C+ C GH + +C E CYNC GH ++DC + + +
Sbjct: 373 CFNCQQPGHRSNDCPEPKKEREPRVCYNCQQPGHNSRDCPEERKPREGRNGFTSGFGGGN 432
Query: 86 SGHF----ARNCPNDSSK---RCYACHQAGHMAKECPGQTAGKSPEPVVDMSLTCYVCGH 138
G F A N+ + +C+ C GH + ECP G C+ CG
Sbjct: 433 DGGFGGGNAEGFGNNEERGPMKCFNCKGEGHRSAECPEPPRG------------CFNCGE 480
Query: 139 QGHLSYDC 146
QGH S +C
Sbjct: 481 QGHRSNEC 488
Score = 91 (37.1 bits), Expect = 8.0e-07, Sum P(2) = 8.0e-07
Identities = 24/66 (36%), Positives = 30/66 (45%)
Query: 84 NSSGHFARNCPNDSSKR---CYACHQAGHMAKECPGQTAGKSPEPVVDMSLTCYVCGHQG 140
NS+G + D +R C+ C Q GH + +CP K EP V CY C G
Sbjct: 353 NSNGFGSGGGGQDRGERNNNCFNCQQPGHRSNDCPEPK--KEREPRV-----CYNCQQPG 405
Query: 141 HLSYDC 146
H S DC
Sbjct: 406 HNSRDC 411
Score = 87 (35.7 bits), Expect = 8.0e-07, Sum P(2) = 8.0e-07
Identities = 18/48 (37%), Positives = 23/48 (47%)
Query: 9 CYNCFDFGHYQYSCPQ-KSSADARGDKVGIVCYKCNNYGHFARECATE 55
C+NC GH CP+ K + R VCY C GH +R+C E
Sbjct: 259 CFNCQQPGHRSNDCPEPKKEREPR------VCYNCQQPGHNSRDCPEE 300
Score = 80 (33.2 bits), Expect = 4.2e-06, Sum P(2) = 4.2e-06
Identities = 14/39 (35%), Positives = 19/39 (48%)
Query: 39 CYKCNNYGHFARECAT-----ESVTCYNCSGQGHVAKDC 72
C+ C GH + +C E CYNC GH ++DC
Sbjct: 259 CFNCQQPGHRSNDCPEPKKEREPRVCYNCQQPGHNSRDC 297
>MGI|MGI:2442912 [details] [associations]
symbol:Zcchc7 "zinc finger, CCHC domain containing 7"
species:10090 "Mus musculus" [GO:0003674 "molecular_function"
evidence=ND] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008150 "biological_process" evidence=ND] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0046872 "metal ion binding"
evidence=IEA] InterPro:IPR001878 Pfam:PF00098 PROSITE:PS50158
SMART:SM00343 MGI:MGI:2442912 GO:GO:0005737 GO:GO:0005730
GO:GO:0046872 GO:GO:0008270 GO:GO:0003676 EMBL:CH466565
eggNOG:COG5082 Gene3D:4.10.60.10 SUPFAM:SSF57756
GeneTree:ENSGT00510000048226 KO:K12597 CTD:84186
HOGENOM:HOG000155768 OrthoDB:EOG4P5KBB OMA:EAQIANN EMBL:AK013175
EMBL:AK043238 EMBL:AK050430 EMBL:AK157728 EMBL:AL805896
EMBL:AL805914 EMBL:BC054405 EMBL:BC117020 EMBL:BC117022
EMBL:BC144774 IPI:IPI00112298 IPI:IPI00227238 RefSeq:NP_613056.2
UniGene:Mm.331576 UniGene:Mm.486647 ProteinModelPortal:B1AX39
SMR:B1AX39 STRING:B1AX39 PhosphoSite:B1AX39 PRIDE:B1AX39
Ensembl:ENSMUST00000107824 Ensembl:ENSMUST00000147272 GeneID:319885
KEGG:mmu:319885 UCSC:uc008sry.2 UCSC:uc008ssa.2 InParanoid:B1AX39
ChiTaRS:ZCCHC7 NextBio:395583 Bgee:B1AX39 Genevestigator:B1AX39
Uniprot:B1AX39
Length = 541
Score = 128 (50.1 bits), Expect = 2.2e-07, P = 2.2e-07
Identities = 38/126 (30%), Positives = 52/126 (41%)
Query: 37 IVCYKCNNYGHFARECAT-ESV-TCYNCSGQGHVAKDCTVKSSIICYNCNSSGHFARNCP 94
+ C C+ GH ++ C + V C CS +GH+ C + + C SS H C
Sbjct: 236 VTCRNCDKRGHLSKNCPLPQKVRACCLCSERGHLQYGCPARYCLDCSLPMSSNH---RCF 292
Query: 95 NDSS--KRCYACHQAGHMAKECPG--------QTAG--KSPE-PVVDMSLT-CYVCGHQG 140
S KRC C GH A CP G K P+ P +L CY C +G
Sbjct: 293 ERLSWRKRCDRCDMIGHHADACPEIWRQYHLTTKPGPPKKPKTPSGQSALVYCYNCAQKG 352
Query: 141 HLSYDC 146
H ++C
Sbjct: 353 HYGHEC 358
>TAIR|locus:2057295 [details] [associations]
symbol:AT2G12880 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA;ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR001878 Pfam:PF00098 PROSITE:PS50158 SMART:SM00343
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0046872 GO:GO:0008270
GO:GO:0003676 Gene3D:4.10.60.10 SUPFAM:SSF57756 EMBL:AC006437
EMBL:AC007155 IPI:IPI00547403 PIR:C84504 RefSeq:NP_178944.1
UniGene:At.52721 ProteinModelPortal:Q9SKG2 SMR:Q9SKG2 PRIDE:Q9SKG2
EnsemblPlants:AT2G12880.1 GeneID:815767 KEGG:ath:AT2G12880
TAIR:At2g12880 eggNOG:KOG4400 InParanoid:Q9SKG2 PhylomeDB:Q9SKG2
ArrayExpress:Q9SKG2 Genevestigator:Q9SKG2 Uniprot:Q9SKG2
Length = 119
Score = 118 (46.6 bits), Expect = 2.3e-07, P = 2.3e-07
Identities = 24/67 (35%), Positives = 32/67 (47%)
Query: 80 CYNCNSSGHFARNC-----PNDSSKRCYACHQAGHMAKECPGQTAGKSPEPVVDMSLTCY 134
CY C GHFAR+C P + CY C + GH + CP + + V+ CY
Sbjct: 36 CYKCGKLGHFARSCHVVTQPTTAYITCYFCSEEGHRSNGCPNKRTDQ-----VNPKGHCY 90
Query: 135 VCGHQGH 141
CG+Q H
Sbjct: 91 WCGNQDH 97
Score = 110 (43.8 bits), Expect = 1.6e-06, P = 1.6e-06
Identities = 26/70 (37%), Positives = 31/70 (44%)
Query: 31 RGDKVGIVCYKCNNYGHFAREC------ATESVTCYNCSGQGHVAKDCTVKSSII----- 79
R D CYKC GHFAR C T +TCY CS +GH + C K +
Sbjct: 28 RNDYDPRACYKCGKLGHFARSCHVVTQPTTAYITCYFCSEEGHRSNGCPNKRTDQVNPKG 87
Query: 80 -CYNCNSSGH 88
CY C + H
Sbjct: 88 HCYWCGNQDH 97
Score = 100 (40.3 bits), Expect = 1.9e-05, P = 1.9e-05
Identities = 23/77 (29%), Positives = 32/77 (41%)
Query: 44 NYGHFARECATESVTCYNCSGQGHVAKDCTVKSS-----IICYNCNSSGHFARNCPNDSS 98
+Y + R + CY C GH A+ C V + I CY C+ GH + CPN +
Sbjct: 21 SYNNDRRRNDYDPRACYKCGKLGHFARSCHVVTQPTTAYITCYFCSEEGHRSNGCPNKRT 80
Query: 99 KR------CYACHQAGH 109
+ CY C H
Sbjct: 81 DQVNPKGHCYWCGNQDH 97
Score = 89 (36.4 bits), Expect = 0.00027, P = 0.00027
Identities = 20/53 (37%), Positives = 25/53 (47%)
Query: 95 NDSSKR-CYACHQAGHMAKECPGQTAGKSPEPVVDMSLTCYVCGHQGHLSYDC 146
ND R CY C + GH A+ C T +P +TCY C +GH S C
Sbjct: 29 NDYDPRACYKCGKLGHFARSCHVVT-----QPTTAY-ITCYFCSEEGHRSNGC 75
>RGD|1307450 [details] [associations]
symbol:Zcchc9 "zinc finger, CCHC domain containing 9"
species:10116 "Rattus norvegicus" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0010923 "negative regulation of phosphatase activity"
evidence=IEA;ISO] InterPro:IPR001878 Pfam:PF00098 PROSITE:PS50158
SMART:SM00343 RGD:1307450 GO:GO:0046872 GO:GO:0008270 GO:GO:0003676
eggNOG:COG5082 Gene3D:4.10.60.10 SUPFAM:SSF57756 GO:GO:0010923
EMBL:CH473955 HOGENOM:HOG000059608 CTD:84240 HOVERGEN:HBG056034
OMA:DSQEVRE OrthoDB:EOG49W2G3 GeneTree:ENSGT00510000047308
EMBL:BC083695 IPI:IPI00555221 RefSeq:NP_001013174.1
UniGene:Rn.94285 Ensembl:ENSRNOT00000020111 GeneID:309986
KEGG:rno:309986 UCSC:RGD:1307450 InParanoid:Q5XII6 NextBio:661527
Genevestigator:Q5XII6 Uniprot:Q5XII6
Length = 271
Score = 122 (48.0 bits), Expect = 2.7e-07, P = 2.7e-07
Identities = 35/118 (29%), Positives = 52/118 (44%)
Query: 50 RECATES-VTCYNCSGQGHVAKDC--TVKSSI----ICYNCNSSGHFARNC-PN-DSS-- 98
R+ A ++ + C++C GH DC ++S ICY C S+ H C N D +
Sbjct: 120 RQAAKKNAMVCFHCRQPGHGIADCPAVLESQDMGTGICYRCGSTEHEMTKCRANVDPALG 179
Query: 99 ----KRCYACHQAGHMAKECPGQTAGKSPEPVVDMSLTCYVCGHQGHLSYDCKLVQKS 152
+C+ C + GH+++ CP T G V C +CG H DC Q S
Sbjct: 180 EFPFAKCFVCGEMGHLSRSCPDNTKG-----VYADGGGCKLCGSVEHFKKDCPENQNS 232
Score = 108 (43.1 bits), Expect = 4.9e-05, P = 4.9e-05
Identities = 33/114 (28%), Positives = 46/114 (40%)
Query: 9 CYNCFDFGHYQYSCPQKSSADARGDKVGIVCYKCNNYGHFARECATESVTCYNCSGQGHV 68
C++C GH CP + G GI CY+C + H +C G+
Sbjct: 130 CFHCRQPGHGIADCPAVLESQDMG--TGI-CYRCGSTEHEMTKCRANVDPAL---GEFPF 183
Query: 69 AKDCTVKSSIICYNCNSSGHFARNCPNDSSKRCYA-------CHQAGHMAKECP 115
AK C+ C GH +R+CP D++K YA C H K+CP
Sbjct: 184 AK---------CFVCGEMGHLSRSCP-DNTKGVYADGGGCKLCGSVEHFKKDCP 227
>UNIPROTKB|Q8N567 [details] [associations]
symbol:ZCCHC9 "Zinc finger CCHC domain-containing protein
9" species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0010923 "negative regulation of phosphatase activity"
evidence=IDA] InterPro:IPR001878 Pfam:PF00098 PROSITE:PS50158
SMART:SM00343 GO:GO:0046872 GO:GO:0008270 GO:GO:0003676
EMBL:CH471084 eggNOG:COG5082 Gene3D:4.10.60.10 SUPFAM:SSF57756
GO:GO:0010923 HOGENOM:HOG000059608 EMBL:AK314160 EMBL:AL512712
EMBL:BC032736 IPI:IPI00410284 RefSeq:NP_001124507.1
RefSeq:NP_001124508.1 RefSeq:NP_115656.1 UniGene:Hs.15536
ProteinModelPortal:Q8N567 SMR:Q8N567 IntAct:Q8N567
PhosphoSite:Q8N567 DMDM:116242852 PaxDb:Q8N567 PRIDE:Q8N567
Ensembl:ENST00000254037 Ensembl:ENST00000380199
Ensembl:ENST00000407610 Ensembl:ENST00000438268 GeneID:84240
KEGG:hsa:84240 UCSC:uc003khi.3 CTD:84240 GeneCards:GC05P080597
HGNC:HGNC:25424 HPA:HPA038404 neXtProt:NX_Q8N567
PharmGKB:PA134931870 HOVERGEN:HBG056034 InParanoid:Q8N567
OMA:DSQEVRE OrthoDB:EOG49W2G3 PhylomeDB:Q8N567 GenomeRNAi:84240
NextBio:73713 Bgee:Q8N567 CleanEx:HS_ZCCHC9 Genevestigator:Q8N567
GermOnline:ENSG00000131732 Uniprot:Q8N567
Length = 271
Score = 119 (46.9 bits), Expect = 5.9e-07, P = 5.9e-07
Identities = 32/118 (27%), Positives = 51/118 (43%)
Query: 50 RECATES-VTCYNCSGQGHVAKDCTVK------SSIICYNCNSSGHFARNCPN--DSS-- 98
R+ A ++ + C++C GH DC + ICY C S+ H C D +
Sbjct: 120 RQAAKKNAMVCFHCRKPGHGIADCPAALENQDMGTGICYRCGSTEHEITKCKAKVDPALG 179
Query: 99 ----KRCYACHQAGHMAKECPGQTAGKSPEPVVDMSLTCYVCGHQGHLSYDCKLVQKS 152
+C+ C + GH+++ CP +P+ + C +CG HL DC Q S
Sbjct: 180 EFPFAKCFVCGEMGHLSRSCPD-----NPKGLYADGGGCKLCGSVEHLKKDCPESQNS 232
Score = 106 (42.4 bits), Expect = 0.00013, P = 0.00013
Identities = 33/114 (28%), Positives = 46/114 (40%)
Query: 9 CYNCFDFGHYQYSCPQKSSADARGDKVGIVCYKCNNYGHFARECATESVTCYNCSGQGHV 68
C++C GH CP G GI CY+C + H +C + G+
Sbjct: 130 CFHCRKPGHGIADCPAALENQDMG--TGI-CYRCGSTEHEITKCKAKVDPAL---GEFPF 183
Query: 69 AKDCTVKSSIICYNCNSSGHFARNCPNDSSKRCYA-------CHQAGHMAKECP 115
AK C+ C GH +R+CP D+ K YA C H+ K+CP
Sbjct: 184 AK---------CFVCGEMGHLSRSCP-DNPKGLYADGGGCKLCGSVEHLKKDCP 227
>UNIPROTKB|G5E6N6 [details] [associations]
symbol:G5E6N6 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0008270 "zinc ion binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR001878
Pfam:PF00098 PROSITE:PS50158 SMART:SM00343 GO:GO:0046872
GO:GO:0008270 GO:GO:0003676 Gene3D:4.10.60.10 SUPFAM:SSF57756
GeneTree:ENSGT00510000047308 EMBL:DAAA02018957
Ensembl:ENSBTAT00000064097 Uniprot:G5E6N6
Length = 252
Score = 118 (46.6 bits), Expect = 6.4e-07, P = 6.4e-07
Identities = 35/135 (25%), Positives = 59/135 (43%)
Query: 26 SSADARGDKVGIVCYK--CNNYGHFARECATESVTCYNCSGQGHVAKDCTVK------SS 77
+S +AR +K+ + K C R+ A ++ C++C QGH DC +
Sbjct: 83 NSLEAR-EKIVVALKKDSCWEGRRLKRQAAKKNAICFHCR-QGHGIADCPAALENQEMGT 140
Query: 78 IICYNCNSSGHFARNCPNDSSK--RCYACHQAGHMAKECPGQTAGKSPEPVVDMSLTCYV 135
ICY C S+ + +C+ C + GH+++ CP +P+ + C +
Sbjct: 141 GICYWCGSTCKVKLDPALGELPFAKCFVCGEMGHLSRSCPD-----NPKGLYADGGGCRL 195
Query: 136 CGHQGHLSYDCKLVQ 150
CG HL DC +Q
Sbjct: 196 CGSVEHLKKDCPKIQ 210
>UNIPROTKB|Q8N3Z6 [details] [associations]
symbol:ZCCHC7 "Zinc finger CCHC domain-containing protein
7" species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
InterPro:IPR001878 Pfam:PF00098 PROSITE:PS50158 SMART:SM00343
GO:GO:0005737 GO:GO:0005730 GO:GO:0046872 GO:GO:0008270
GO:GO:0003676 EMBL:CH471071 Gene3D:4.10.60.10 SUPFAM:SSF57756
KO:K12597 EMBL:AL158155 CTD:84186 OrthoDB:EOG4P5KBB EMBL:AK026264
EMBL:AK074608 EMBL:AK315128 EMBL:AL512604 EMBL:BC022434
EMBL:BC036940 EMBL:AF161349 IPI:IPI00166710 IPI:IPI00871360
RefSeq:NP_115602.2 UniGene:Hs.654700 ProteinModelPortal:Q8N3Z6
SMR:Q8N3Z6 MINT:MINT-1182798 STRING:Q8N3Z6 PhosphoSite:Q8N3Z6
DMDM:226693603 PaxDb:Q8N3Z6 PRIDE:Q8N3Z6 DNASU:84186
Ensembl:ENST00000322831 Ensembl:ENST00000336755 GeneID:84186
KEGG:hsa:84186 UCSC:uc003zzq.3 UCSC:uc003zzs.1
GeneCards:GC09P037120 HGNC:HGNC:26209 HPA:HPA020600 HPA:HPA021088
HPA:HPA029522 neXtProt:NX_Q8N3Z6 PharmGKB:PA128394734
eggNOG:NOG249334 HOVERGEN:HBG094757 InParanoid:Q8N3Z6 OMA:EAQIANN
GenomeRNAi:84186 NextBio:73566 ArrayExpress:Q8N3Z6 Bgee:Q8N3Z6
CleanEx:HS_ZCCHC7 Genevestigator:Q8N3Z6 GermOnline:ENSG00000147905
Uniprot:Q8N3Z6
Length = 543
Score = 123 (48.4 bits), Expect = 7.7e-07, P = 7.7e-07
Identities = 34/128 (26%), Positives = 50/128 (39%)
Query: 37 IVCYKCNNYGHFARECATESVT--CYNCSGQGHVAKDCTVKSSIICYNCNSSGHFARNC- 93
I+C C+ GH ++ C C+ CS +GH+ C +C C +C
Sbjct: 241 IICRNCDKRGHLSKNCPLPRKVRRCFLCSRRGHLLYSCPAP---LCEYCPVPKMLDHSCL 297
Query: 94 -PNDSSKRCYACHQAGHMAKEC------------PGQTAGKSPE-PVVDMSLT-CYVCGH 138
+ K+C CH GH C PG K P+ P +L CY C
Sbjct: 298 FRHSWDKQCDRCHMLGHYTDACTEIWRQYHLTTKPGPP--KKPKTPSRPSALAYCYHCAQ 355
Query: 139 QGHLSYDC 146
+GH ++C
Sbjct: 356 KGHYGHEC 363
Score = 118 (46.6 bits), Expect = 2.7e-06, P = 2.7e-06
Identities = 21/60 (35%), Positives = 32/60 (53%)
Query: 73 TVKSSIICYNCNSSGHFARNCPNDSS-KRCYACHQAGHMAKECPGQTAGKSPEP-VVDMS 130
+ +IIC NC+ GH ++NCP +RC+ C + GH+ CP P P ++D S
Sbjct: 236 SANKNIICRNCDKRGHLSKNCPLPRKVRRCFLCSRRGHLLYSCPAPLCEYCPVPKMLDHS 295
>UNIPROTKB|F1ML79 [details] [associations]
symbol:ZCCHC9 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0008270 "zinc ion binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR001878
Pfam:PF00098 PROSITE:PS50158 SMART:SM00343 GO:GO:0046872
GO:GO:0008270 GO:GO:0003676 Gene3D:4.10.60.10 SUPFAM:SSF57756
OMA:DSQEVRE GeneTree:ENSGT00510000047308 EMBL:DAAA02021025
IPI:IPI00689669 UniGene:Bt.61596 Ensembl:ENSBTAT00000006931
Uniprot:F1ML79
Length = 271
Score = 117 (46.2 bits), Expect = 9.9e-07, P = 9.9e-07
Identities = 31/118 (26%), Positives = 51/118 (43%)
Query: 50 RECATES-VTCYNCSGQGHVAKDCTVK------SSIICYNCNSSGHFARNCPN--DSS-- 98
R+ A ++ + C++C GH DC + ICY C S+ H C D +
Sbjct: 120 RQAAKKNAMVCFHCRQPGHGIADCPAALENQEMGTGICYRCGSTEHEITKCKAKVDPALG 179
Query: 99 ----KRCYACHQAGHMAKECPGQTAGKSPEPVVDMSLTCYVCGHQGHLSYDCKLVQKS 152
+C+ C + GH+++ CP +P+ + C +CG H+ DC Q S
Sbjct: 180 EFPFAKCFVCGEMGHLSRSCPD-----NPKGLYADGGGCRLCGSVEHMKKDCPESQNS 232
Score = 112 (44.5 bits), Expect = 3.6e-06, P = 3.6e-06
Identities = 35/114 (30%), Positives = 47/114 (41%)
Query: 9 CYNCFDFGHYQYSCPQKSSADARGDKVGIVCYKCNNYGHFARECATESVTCYNCSGQGHV 68
C++C GH CP G GI CY+C + H +C + G+
Sbjct: 130 CFHCRQPGHGIADCPAALENQEMG--TGI-CYRCGSTEHEITKCKAKVDPAL---GEFPF 183
Query: 69 AKDCTVKSSIICYNCNSSGHFARNCPNDSSKRCYA----CHQAG---HMAKECP 115
AK C+ C GH +R+CP D+ K YA C G HM K+CP
Sbjct: 184 AK---------CFVCGEMGHLSRSCP-DNPKGLYADGGGCRLCGSVEHMKKDCP 227
>UNIPROTKB|D6RAT4 [details] [associations]
symbol:CNBP "Cellular nucleic acid-binding protein"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR001878 Pfam:PF00098 PROSITE:PS50158 SMART:SM00343
GO:GO:0046872 GO:GO:0008270 GO:GO:0003676 Gene3D:4.10.60.10
SUPFAM:SSF57756 EMBL:AC108673 EMBL:AC135587 HGNC:HGNC:13164
ChiTaRS:CNBP IPI:IPI00965541 ProteinModelPortal:D6RAT4 SMR:D6RAT4
Ensembl:ENST00000512338 ArrayExpress:D6RAT4 Bgee:D6RAT4
Uniprot:D6RAT4
Length = 114
Score = 112 (44.5 bits), Expect = 1.0e-06, P = 1.0e-06
Identities = 26/68 (38%), Positives = 33/68 (48%)
Query: 39 CYKCNNYGHFARECATESVTCYNCSGQGHVAKDCTVKSSI--ICYNCNSSGHFARNCPND 96
C+KC GH+AREC T +G V SS+ ICY C SGH A++C D
Sbjct: 6 CFKCGRSGHWARECPTGGGRGRGMRSRGRGGFQF-VSSSLPDICYRCGESGHLAKDC--D 62
Query: 97 SSKRCYAC 104
+ AC
Sbjct: 63 LQEDVLAC 70
Score = 108 (43.1 bits), Expect = 2.6e-06, P = 2.6e-06
Identities = 25/62 (40%), Positives = 33/62 (53%)
Query: 97 SSKRCYACHQAGHMAKECP-G-------QTAGKSPEPVVDMSLT--CYVCGHQGHLSYDC 146
SS C+ C ++GH A+ECP G ++ G+ V SL CY CG GHL+ DC
Sbjct: 2 SSNECFKCGRSGHWARECPTGGGRGRGMRSRGRGGFQFVSSSLPDICYRCGESGHLAKDC 61
Query: 147 KL 148
L
Sbjct: 62 DL 63
Score = 93 (37.8 bits), Expect = 0.00010, P = 0.00010
Identities = 22/78 (28%), Positives = 37/78 (47%)
Query: 5 STIQCYNCFDFGHYQYSCPQKSSADARGDKVGIVCYKCNNYGHFARECATESVTCYNCSG 64
S+ +C+ C GH+ CP + RG G+ + G F ++ CY C
Sbjct: 2 SSNECFKCGRSGHWARECP---TGGGRGR--GM---RSRGRGGFQFVSSSLPDICYRCGE 53
Query: 65 QGHVAKDCTVKSSII-CY 81
GH+AKDC ++ ++ C+
Sbjct: 54 SGHLAKDCDLQEDVLACF 71
>UNIPROTKB|E1BZR6 [details] [associations]
symbol:ZCCHC9 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0010923 "negative
regulation of phosphatase activity" evidence=IEA]
InterPro:IPR001878 Pfam:PF00098 PROSITE:PS50158 SMART:SM00343
GO:GO:0046872 GO:GO:0008270 GO:GO:0003676 Gene3D:4.10.60.10
SUPFAM:SSF57756 GO:GO:0010923 CTD:84240 OMA:DSQEVRE
GeneTree:ENSGT00510000047308 EMBL:AADN02047870 IPI:IPI00571897
RefSeq:XP_424900.1 UniGene:Gga.34920 Ensembl:ENSGALT00000025157
GeneID:427320 KEGG:gga:427320 NextBio:20828598 Uniprot:E1BZR6
Length = 235
Score = 115 (45.5 bits), Expect = 1.1e-06, P = 1.1e-06
Identities = 30/111 (27%), Positives = 46/111 (41%)
Query: 50 RECATESVTCYNCSGQGHVAKDC--TVKSSI----ICYNCNSSGHFARNCPN--DSS--- 98
+E ++ C++C GH DC ++S ICY C S+ H C D +
Sbjct: 86 QEARKNAMVCFHCREPGHGVADCPAVLESQDMGTGICYRCGSTEHDIGKCKAKIDPAVGA 145
Query: 99 ---KRCYACHQAGHMAKECPGQTAGKSPEPVVDMSLTCYVCGHQGHLSYDC 146
+C+ C + GH+++ CP G E C +CG H DC
Sbjct: 146 FPYAKCFICGEMGHLSRSCPDNPKGLYAE-----GGCCRLCGSVEHYRKDC 191
Score = 106 (42.4 bits), Expect = 9.4e-05, P = 9.4e-05
Identities = 34/114 (29%), Positives = 47/114 (41%)
Query: 9 CYNCFDFGHYQYSCPQKSSADARGDKVGIVCYKCNNYGHFARECATESVTCYNCSGQGHV 68
C++C + GH CP + G GI CY+C + H +C + G
Sbjct: 95 CFHCREPGHGVADCPAVLESQDMG--TGI-CYRCGSTEHDIGKCKAKIDPAV---GAFPY 148
Query: 69 AKDCTVKSSIICYNCNSSGHFARNCPNDSSKRCYA----CHQAG---HMAKECP 115
AK C+ C GH +R+CP D+ K YA C G H K+CP
Sbjct: 149 AK---------CFICGEMGHLSRSCP-DNPKGLYAEGGCCRLCGSVEHYRKDCP 192
>FB|FBgn0036668 [details] [associations]
symbol:CG9715 species:7227 "Drosophila melanogaster"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] InterPro:IPR001878 PROSITE:PS50158
SMART:SM00343 EMBL:AE014296 GO:GO:0008270 GO:GO:0003676
Gene3D:4.10.60.10 SUPFAM:SSF57756 GeneTree:ENSGT00700000104696
FlyBase:FBgn0036668 ChiTaRS:CG9715 RefSeq:NP_648926.3
ProteinModelPortal:Q9VVA9 SMR:Q9VVA9 IntAct:Q9VVA9 MINT:MINT-808441
STRING:Q9VVA9 EnsemblMetazoa:FBtr0075330 GeneID:39883
KEGG:dme:Dmel_CG9715 UCSC:CG9715-RA InParanoid:Q9VVA9 OMA:ECENAND
PhylomeDB:Q9VVA9 GenomeRNAi:39883 NextBio:815882
ArrayExpress:Q9VVA9 Bgee:Q9VVA9 Uniprot:Q9VVA9
Length = 1734
Score = 127 (49.8 bits), Expect = 1.2e-06, P = 1.2e-06
Identities = 27/103 (26%), Positives = 44/103 (42%)
Query: 5 STIQCYNCFDFGHYQYSCPQKSSADARGDKVGIVCYKCNNYGHFARECATESVTCYNCSG 64
S +C NCF+ GH + CP+ +VC+ C GH C + C+ C
Sbjct: 849 SHAKCSNCFEMGHVRSKCPRPRKP--------LVCFICGTMGHAEPRCP--NAICFGCGS 898
Query: 65 QGHV----AKDCTVKSSIICYNCNSSGHFARNCPNDSSKRCYA 103
+ + C+ S ++C C GH +CP D +R ++
Sbjct: 899 KQEIYVQQCNKCSFHSRLVCQLCKMRGHGVDHCP-DKWRRYHS 940
>UNIPROTKB|F6V033 [details] [associations]
symbol:ZCCHC9 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR001878
Pfam:PF00098 PROSITE:PS50158 SMART:SM00343 GO:GO:0046872
GO:GO:0008270 GO:GO:0003676 Gene3D:4.10.60.10 SUPFAM:SSF57756
CTD:84240 OMA:DSQEVRE GeneTree:ENSGT00510000047308
EMBL:AAEX03002099 RefSeq:XP_536305.1 Ensembl:ENSCAFT00000013818
GeneID:479161 KEGG:cfa:479161 Uniprot:F6V033
Length = 271
Score = 116 (45.9 bits), Expect = 1.3e-06, P = 1.3e-06
Identities = 31/118 (26%), Positives = 50/118 (42%)
Query: 50 RECATES-VTCYNCSGQGHVAKDCTVK------SSIICYNCNSSGHFARNCPN--DSS-- 98
R+ A ++ + C++C GH DC + ICY C S+ H C D +
Sbjct: 120 RQAAKKNAMVCFHCRKPGHGIADCPAALENQDMGTGICYRCGSTEHEITKCKAKVDPALG 179
Query: 99 ----KRCYACHQAGHMAKECPGQTAGKSPEPVVDMSLTCYVCGHQGHLSYDCKLVQKS 152
+C+ C + GH+++ CP +P+ + C +CG H DC Q S
Sbjct: 180 EFPFAKCFVCGEMGHLSRSCPD-----NPKGLYADGGCCRLCGSVEHFKKDCPESQNS 232
Score = 105 (42.0 bits), Expect = 0.00019, P = 0.00019
Identities = 34/114 (29%), Positives = 46/114 (40%)
Query: 9 CYNCFDFGHYQYSCPQKSSADARGDKVGIVCYKCNNYGHFARECATESVTCYNCSGQGHV 68
C++C GH CP G GI CY+C + H +C + G+
Sbjct: 130 CFHCRKPGHGIADCPAALENQDMG--TGI-CYRCGSTEHEITKCKAKVDPAL---GEFPF 183
Query: 69 AKDCTVKSSIICYNCNSSGHFARNCPNDSSKRCYA----CHQAG---HMAKECP 115
AK C+ C GH +R+CP D+ K YA C G H K+CP
Sbjct: 184 AK---------CFVCGEMGHLSRSCP-DNPKGLYADGGCCRLCGSVEHFKKDCP 227
>TAIR|locus:2149234 [details] [associations]
symbol:AT5G20220 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA;ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0031072 "heat shock protein binding"
evidence=IEA] [GO:0051082 "unfolded protein binding" evidence=IEA]
InterPro:IPR001878 PROSITE:PS50158 SMART:SM00343 EMBL:CP002688
GO:GO:0008270 GO:GO:0003676 Gene3D:4.10.60.10 SUPFAM:SSF57756
IPI:IPI00540792 RefSeq:NP_001078608.1 RefSeq:NP_568393.1
UniGene:At.31217 ProteinModelPortal:F4K466 SMR:F4K466
EnsemblPlants:AT5G20220.1 EnsemblPlants:AT5G20220.2 GeneID:832144
KEGG:ath:AT5G20220 OMA:SIDERPW Uniprot:F4K466
Length = 393
Score = 115 (45.5 bits), Expect = 3.4e-06, P = 3.4e-06
Identities = 29/103 (28%), Positives = 42/103 (40%)
Query: 8 QCYNCFDFGHYQYSCPQKSSADARGDKVGI-VCYKCNNYGHFARECATESVTCYNCSGQG 66
+C C GH + +CP+ S +G C C GH +R C + +CSG+
Sbjct: 291 RCRGCGGKGHNRRTCPKSKSIVTKGISTRYHKCGICGERGHNSRTCRKPTGVNPSCSGEN 350
Query: 67 HVAKDCTVKSSIICYNCNSSGHFARNCPNDSSKRCYAC-HQAG 108
+D K + C C GH R CP+ +C Q G
Sbjct: 351 S-GEDGVGKITYACGFCKKMGHNVRTCPSKQVSDSDSCLEQEG 392
Score = 104 (41.7 bits), Expect = 0.00058, P = 0.00058
Identities = 31/135 (22%), Positives = 48/135 (35%)
Query: 24 QKSSADARGDKVGIVCYKCNNYGHFAREC------ATESVTCYNCSGQGHVAKDCTVKSS 77
++ S +G K C C GH C A C C G+GH + C S
Sbjct: 253 EQRSLSMKGTK--FYCKNCGQEGHRRHYCPELGTNADRKFRCRGCGGKGHNRRTCPKSKS 310
Query: 78 IICYNCNSSGHFARNCPNDSSKRCYACHQAGHMAKECPGQTAGKSPEPVVDMSLTCYVCG 137
I+ ++ H C + C + + C G+ +G+ + V ++ C C
Sbjct: 311 IVTKGISTRYHKCGIC-GERGHNSRTCRKPTGVNPSCSGENSGE--DGVGKITYACGFCK 367
Query: 138 HQGHLSYDCKLVQKS 152
GH C Q S
Sbjct: 368 KMGHNVRTCPSKQVS 382
>UNIPROTKB|F1RF07 [details] [associations]
symbol:ZCCHC9 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0010923 "negative regulation of phosphatase activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR001878
Pfam:PF00098 PROSITE:PS50158 SMART:SM00343 GO:GO:0046872
GO:GO:0008270 GO:GO:0003676 Gene3D:4.10.60.10 SUPFAM:SSF57756
GO:GO:0010923 CTD:84240 OMA:DSQEVRE GeneTree:ENSGT00510000047308
EMBL:CU928538 RefSeq:NP_001231149.1 UniGene:Ssc.1803
Ensembl:ENSSSCT00000015433 GeneID:100514154 KEGG:ssc:100514154
Uniprot:F1RF07
Length = 270
Score = 111 (44.1 bits), Expect = 4.5e-06, P = 4.5e-06
Identities = 29/112 (25%), Positives = 48/112 (42%)
Query: 50 RECATES-VTCYNCSGQGHVAKDCTVK------SSIICYNCNSSGHFARNCPN--DSS-- 98
R+ A ++ + C++C GH DC + ICY C S+ H C D +
Sbjct: 119 RQAAKKNAMVCFHCRQPGHGIADCPAALENQEMGTGICYRCGSTEHEIIKCKAQVDPALG 178
Query: 99 ----KRCYACHQAGHMAKECPGQTAGKSPEPVVDMSLTCYVCGHQGHLSYDC 146
+C+ C + GH+++ CP +P+ + C +CG H DC
Sbjct: 179 EFPFAKCFVCGEMGHLSRSCPD-----NPKGLYADGGCCRLCGSVEHFKKDC 225
Score = 106 (42.4 bits), Expect = 0.00013, P = 0.00013
Identities = 34/114 (29%), Positives = 46/114 (40%)
Query: 9 CYNCFDFGHYQYSCPQKSSADARGDKVGIVCYKCNNYGHFARECATESVTCYNCSGQGHV 68
C++C GH CP G GI CY+C + H +C + G+
Sbjct: 129 CFHCRQPGHGIADCPAALENQEMG--TGI-CYRCGSTEHEIIKCKAQVDPAL---GEFPF 182
Query: 69 AKDCTVKSSIICYNCNSSGHFARNCPNDSSKRCYA----CHQAG---HMAKECP 115
AK C+ C GH +R+CP D+ K YA C G H K+CP
Sbjct: 183 AK---------CFVCGEMGHLSRSCP-DNPKGLYADGGCCRLCGSVEHFKKDCP 226
>UNIPROTKB|P20873 [details] [associations]
symbol:gag "Gag polyprotein" species:11688 "Human
immunodeficiency virus type 1 (JRCSF ISOLATE)" [GO:0005654
"nucleoplasm" evidence=TAS] [GO:0005829 "cytosol" evidence=TAS]
[GO:0006278 "RNA-dependent DNA replication" evidence=TAS]
[GO:0010008 "endosome membrane" evidence=TAS] [GO:0016032 "viral
reproduction" evidence=TAS] [GO:0019061 "uncoating of virus"
evidence=TAS] [GO:0030260 "entry into host cell" evidence=TAS]
[GO:0046788 "egress of virus within host cell" evidence=TAS]
InterPro:IPR000071 InterPro:IPR000721 InterPro:IPR001878
InterPro:IPR008916 InterPro:IPR008919 InterPro:IPR010999
InterPro:IPR012344 Pfam:PF00098 Pfam:PF00540 Pfam:PF00607
PRINTS:PR00234 PROSITE:PS50158 SMART:SM00343 GO:GO:0005829
Reactome:REACT_116125 GO:GO:0005654 GO:GO:0030430 GO:GO:0046872
GO:GO:0005198 GO:GO:0008270 GO:GO:0003723 GO:GO:0010008
GO:GO:0020002 GO:GO:0006278 Gene3D:4.10.60.10 SUPFAM:SSF57756
GO:GO:0030260 GO:GO:0042025 GO:GO:0019028 EMBL:M38429 GO:GO:0019076
Gene3D:1.10.1200.30 Gene3D:1.10.150.90 Gene3D:1.10.375.10
SUPFAM:SSF47353 SUPFAM:SSF47943 SUPFAM:SSF47836 GO:GO:0046788
GO:GO:0019061 InterPro:IPR014817 Pfam:PF08705
ProteinModelPortal:P20873 SMR:P20873 Uniprot:P20873
Length = 504
Score = 115 (45.5 bits), Expect = 5.0e-06, P = 5.0e-06
Identities = 18/45 (40%), Positives = 25/45 (55%)
Query: 75 KSSIICYNCNSSGHFARNCPNDSSKRCYACHQAGHMAKECPGQTA 119
+ ++ C+NC GH ARNC K C+ C + GH KEC + A
Sbjct: 387 RKNVKCFNCGKEGHIARNCRAPRKKGCWKCGKEGHQMKECTERQA 431
>TAIR|locus:2083936 [details] [associations]
symbol:RS2Z32 "arginine/serine-rich zinc
knuckle-containing protein 32" species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=RCA;TAS] [GO:0008380 "RNA
splicing" evidence=NAS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=RCA] [GO:0030422 "production of siRNA
involved in RNA interference" evidence=RCA] [GO:0035196 "production
of miRNAs involved in gene silencing by miRNA" evidence=RCA]
[GO:0043687 "post-translational protein modification" evidence=RCA]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=RCA] InterPro:IPR000504 InterPro:IPR001878
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102
PROSITE:PS50158 SMART:SM00343 SMART:SM00360 GO:GO:0005634
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000166 GO:GO:0046872
GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL132966
Gene3D:4.10.60.10 SUPFAM:SSF57756 GO:GO:0000398 HSSP:P52298
HOGENOM:HOG000276234 KO:K12896 EMBL:AY095996 EMBL:BT001034
EMBL:AK316697 IPI:IPI00525747 PIR:F84791 PIR:T45890
RefSeq:NP_190918.3 RefSeq:NP_851015.1 UniGene:At.26777
ProteinModelPortal:Q9FYB7 SMR:Q9FYB7 STRING:Q9FYB7 PRIDE:Q9FYB7
EnsemblPlants:AT3G53500.2 GeneID:824518 KEGG:ath:AT3G53500
TAIR:At3g53500 InParanoid:Q9FYB7 OMA:GSPKENG PhylomeDB:Q9FYB7
ProtClustDB:CLSN2680397 Genevestigator:Q9FYB7 Uniprot:Q9FYB7
Length = 284
Score = 110 (43.8 bits), Expect = 1.3e-05, P = 1.3e-05
Identities = 19/43 (44%), Positives = 22/43 (51%)
Query: 59 CYNCSGQGHVAKDCTVKS-SIICYNCNSSGHFARNCPNDSSKR 100
C+NC GH A+DCT CY C GH RNC N S +
Sbjct: 101 CFNCGVDGHWARDCTAGDWKNKCYRCGERGHIERNCKNSPSPK 143
Score = 104 (41.7 bits), Expect = 0.00033, P = 0.00033
Identities = 16/43 (37%), Positives = 24/43 (55%)
Query: 80 CYNCNSSGHFARNCP-NDSSKRCYACHQAGHMAKECPGQTAGK 121
C+NC GH+AR+C D +CY C + GH+ + C + K
Sbjct: 101 CFNCGVDGHWARDCTAGDWKNKCYRCGERGHIERNCKNSPSPK 143
>UNIPROTKB|P18800 [details] [associations]
symbol:gag "Gag polyprotein" species:11695 "Human
immunodeficiency virus type 1 (NDK ISOLATE)" [GO:0005654
"nucleoplasm" evidence=TAS] [GO:0005829 "cytosol" evidence=TAS]
[GO:0006278 "RNA-dependent DNA replication" evidence=TAS]
[GO:0010008 "endosome membrane" evidence=TAS] [GO:0016032 "viral
reproduction" evidence=TAS] [GO:0019061 "uncoating of virus"
evidence=TAS] [GO:0030260 "entry into host cell" evidence=TAS]
[GO:0046788 "egress of virus within host cell" evidence=TAS]
InterPro:IPR000071 InterPro:IPR000721 InterPro:IPR001878
InterPro:IPR008916 InterPro:IPR008919 InterPro:IPR010999
InterPro:IPR012344 Pfam:PF00098 Pfam:PF00540 Pfam:PF00607
PRINTS:PR00234 PROSITE:PS50158 SMART:SM00343 GO:GO:0005829
Reactome:REACT_116125 GO:GO:0005654 GO:GO:0030430 GO:GO:0046872
GO:GO:0005198 GO:GO:0008270 GO:GO:0003723 GO:GO:0010008
GO:GO:0020002 GO:GO:0006278 Gene3D:4.10.60.10 SUPFAM:SSF57756
GO:GO:0030260 GO:GO:0042025 GO:GO:0019028 EMBL:M27323 GO:GO:0019076
Gene3D:1.10.1200.30 Gene3D:1.10.150.90 Gene3D:1.10.375.10
SUPFAM:SSF47353 SUPFAM:SSF47943 SUPFAM:SSF47836 GO:GO:0046788
GO:GO:0019061 InterPro:IPR014817 Pfam:PF08705 PIR:JQ0065
ProteinModelPortal:P18800 SMR:P18800 Uniprot:P18800
Length = 497
Score = 111 (44.1 bits), Expect = 1.3e-05, P = 1.3e-05
Identities = 18/45 (40%), Positives = 25/45 (55%)
Query: 75 KSSIICYNCNSSGHFARNCPNDSSKRCYACHQAGHMAKECPGQTA 119
+ SI C+NC GH A+NC K C+ C + GH K+C + A
Sbjct: 385 RKSIKCFNCGKEGHTAKNCRAPRKKGCWKCGREGHQMKDCTERQA 429
>UNIPROTKB|P05887 [details] [associations]
symbol:gag "Gag polyprotein" species:11687 "Human
immunodeficiency virus type 1 (CDC-451 ISOLATE)" [GO:0005654
"nucleoplasm" evidence=TAS] [GO:0005829 "cytosol" evidence=TAS]
[GO:0006278 "RNA-dependent DNA replication" evidence=TAS]
[GO:0010008 "endosome membrane" evidence=TAS] [GO:0016032 "viral
reproduction" evidence=TAS] [GO:0019061 "uncoating of virus"
evidence=TAS] [GO:0030260 "entry into host cell" evidence=TAS]
[GO:0046788 "egress of virus within host cell" evidence=TAS]
InterPro:IPR000071 InterPro:IPR000721 InterPro:IPR001878
InterPro:IPR008916 InterPro:IPR008919 InterPro:IPR010999
InterPro:IPR012344 Pfam:PF00098 Pfam:PF00540 Pfam:PF00607
PRINTS:PR00234 PROSITE:PS50158 SMART:SM00343 GO:GO:0005829
Reactome:REACT_116125 GO:GO:0005654 GO:GO:0030430 GO:GO:0046872
GO:GO:0005198 GO:GO:0008270 GO:GO:0003723 GO:GO:0010008
GO:GO:0020002 GO:GO:0006278 Gene3D:4.10.60.10 SUPFAM:SSF57756
GO:GO:0030260 GO:GO:0042025 GO:GO:0019028 GO:GO:0019076
Gene3D:1.10.1200.30 Gene3D:1.10.150.90 Gene3D:1.10.375.10
SUPFAM:SSF47353 SUPFAM:SSF47943 SUPFAM:SSF47836 GO:GO:0046788
GO:GO:0019061 InterPro:IPR014817 Pfam:PF08705 EMBL:M13136
PIR:A25523 ProteinModelPortal:P05887 SMR:P05887 Uniprot:P05887
Length = 500
Score = 111 (44.1 bits), Expect = 1.3e-05, P = 1.3e-05
Identities = 17/43 (39%), Positives = 24/43 (55%)
Query: 77 SIICYNCNSSGHFARNCPNDSSKRCYACHQAGHMAKECPGQTA 119
++ C+NC GH ARNC K C+ C + GH K+C + A
Sbjct: 389 TVKCFNCGKEGHIARNCKAPRKKGCWKCGREGHQMKDCTERQA 431
>TAIR|locus:2049766 [details] [associations]
symbol:RS2Z33 "arginine/serine-rich zinc
knuckle-containing protein 33" species:3702 "Arabidopsis thaliana"
[GO:0005634 "nucleus" evidence=ISM] [GO:0000245 "spliceosomal
complex assembly" evidence=TAS] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=RCA;TAS] [GO:0005515 "protein binding"
evidence=IPI] [GO:0016607 "nuclear speck" evidence=IDA] [GO:0008380
"RNA splicing" evidence=NAS] [GO:0005829 "cytosol" evidence=RCA]
[GO:0048573 "photoperiodism, flowering" evidence=RCA]
InterPro:IPR000504 InterPro:IPR001878 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102 PROSITE:PS50158
SMART:SM00343 SMART:SM00360 EMBL:CP002685 GO:GO:0000166
GO:GO:0046872 GO:GO:0016607 GO:GO:0008270 Gene3D:3.30.70.330
EMBL:AC005896 GO:GO:0003676 Gene3D:4.10.60.10 SUPFAM:SSF57756
UniGene:At.48558 UniGene:At.71153 GO:GO:0000245 HSSP:P52298
HOGENOM:HOG000276234 KO:K12896 PIR:F84791 EMBL:AJ293801
EMBL:AY072315 EMBL:AY114563 EMBL:AK176551 EMBL:BX842463
EMBL:BX842467 EMBL:AK176666 IPI:IPI00543174 RefSeq:NP_850280.1
RefSeq:NP_973619.1 RefSeq:NP_973620.1 ProteinModelPortal:Q8VYA5
SMR:Q8VYA5 IntAct:Q8VYA5 STRING:Q8VYA5 PRIDE:Q8VYA5 ProMEX:Q8VYA5
EnsemblPlants:AT2G37340.1 GeneID:818311 KEGG:ath:AT2G37340
TAIR:At2g37340 InParanoid:Q8VYA5 OMA:NNGDDPS PhylomeDB:Q8VYA5
ProtClustDB:CLSN2680093 Genevestigator:Q8VYA5 Uniprot:Q8VYA5
Length = 290
Score = 110 (43.8 bits), Expect = 1.4e-05, P = 1.4e-05
Identities = 19/42 (45%), Positives = 21/42 (50%)
Query: 59 CYNCSGQGHVAKDCTVKS-SIICYNCNSSGHFARNCPNDSSK 99
C+NC GH A+DCT CY C GH RNC N K
Sbjct: 101 CFNCGVDGHWARDCTAGDWKNKCYRCGERGHIERNCKNSPKK 142
>UNIPROTKB|P05960 [details] [associations]
symbol:gag-pol "Gag-Pol polyprotein" species:11687 "Human
immunodeficiency virus type 1 (CDC-451 ISOLATE)" [GO:0005654
"nucleoplasm" evidence=TAS] [GO:0005829 "cytosol" evidence=TAS]
[GO:0006278 "RNA-dependent DNA replication" evidence=TAS]
[GO:0016032 "viral reproduction" evidence=TAS] [GO:0019061
"uncoating of virus" evidence=TAS] [GO:0030260 "entry into host
cell" evidence=TAS] InterPro:IPR000071 InterPro:IPR000721
InterPro:IPR001878 InterPro:IPR001969 InterPro:IPR001995
InterPro:IPR008916 InterPro:IPR008919 InterPro:IPR010999
InterPro:IPR012344 Pfam:PF00098 Pfam:PF00540 Pfam:PF00607
PRINTS:PR00234 PROSITE:PS00141 PROSITE:PS50158 PROSITE:PS50175
SMART:SM00343 GO:GO:0005829 Reactome:REACT_116125 GO:GO:0005654
GO:GO:0030430 GO:GO:0016020 GO:GO:0046872 GO:GO:0005198
GO:GO:0008270 GO:GO:0006508 GO:GO:0003723 GO:GO:0020002
GO:GO:0006278 Gene3D:4.10.60.10 SUPFAM:SSF57756 GO:GO:0030260
GO:GO:0004190 Gene3D:2.40.70.10 InterPro:IPR021109 SUPFAM:SSF50630
GO:GO:0042025 GO:GO:0019028 Gene3D:1.10.1200.30 Gene3D:1.10.150.90
Gene3D:1.10.375.10 SUPFAM:SSF47353 SUPFAM:SSF47943 SUPFAM:SSF47836
GO:GO:0019061 EMBL:M13136 InterPro:IPR018061 Pfam:PF00077
GO:GO:0046797 ProteinModelPortal:P05960 SMR:P05960 Uniprot:P05960
Length = 550
Score = 111 (44.1 bits), Expect = 1.5e-05, P = 1.5e-05
Identities = 17/43 (39%), Positives = 24/43 (55%)
Query: 77 SIICYNCNSSGHFARNCPNDSSKRCYACHQAGHMAKECPGQTA 119
++ C+NC GH ARNC K C+ C + GH K+C + A
Sbjct: 389 TVKCFNCGKEGHIARNCKAPRKKGCWKCGREGHQMKDCTERQA 431
>UNIPROTKB|P20875 [details] [associations]
symbol:gag-pol "Gag-Pol polyprotein" species:11688 "Human
immunodeficiency virus type 1 (JRCSF ISOLATE)" [GO:0005654
"nucleoplasm" evidence=TAS] [GO:0005829 "cytosol" evidence=TAS]
[GO:0006278 "RNA-dependent DNA replication" evidence=TAS]
[GO:0016032 "viral reproduction" evidence=TAS] [GO:0019061
"uncoating of virus" evidence=TAS] [GO:0030260 "entry into host
cell" evidence=TAS] InterPro:IPR000071 InterPro:IPR000477
InterPro:IPR000721 InterPro:IPR001037 InterPro:IPR001584
InterPro:IPR001878 InterPro:IPR001969 InterPro:IPR001995
InterPro:IPR002156 InterPro:IPR003308 InterPro:IPR008916
InterPro:IPR008919 InterPro:IPR010659 InterPro:IPR010661
InterPro:IPR010999 InterPro:IPR012337 InterPro:IPR012344
Pfam:PF00075 Pfam:PF00078 Pfam:PF00098 Pfam:PF00540 Pfam:PF00552
Pfam:PF00607 Pfam:PF00665 Pfam:PF02022 Pfam:PF06815 Pfam:PF06817
PRINTS:PR00234 PROSITE:PS00141 PROSITE:PS50158 PROSITE:PS50175
PROSITE:PS50876 PROSITE:PS50878 PROSITE:PS50879 PROSITE:PS50994
PROSITE:PS51027 SMART:SM00343 GO:GO:0005829 Reactome:REACT_116125
GO:GO:0005654 GO:GO:0030430 GO:GO:0016020 GO:GO:0046872
GO:GO:0003677 GO:GO:0005198 GO:GO:0008270 GO:GO:0006508
GO:GO:0003723 GO:GO:0046718 GO:GO:0020002 GO:GO:0006310
GO:GO:0090305 SUPFAM:SSF53098 GO:GO:0003964 GO:GO:0006278
Gene3D:4.10.60.10 SUPFAM:SSF57756 GO:GO:0030260 GO:GO:0004190
Gene3D:2.40.70.10 InterPro:IPR021109 SUPFAM:SSF50630 GO:GO:0004523
GO:GO:0015074 GO:GO:0075713 GO:GO:0042025 GO:GO:0003887
GO:GO:0019028 EMBL:M38429 Gene3D:1.10.1200.30 Gene3D:1.10.150.90
Gene3D:1.10.375.10 SUPFAM:SSF47353 SUPFAM:SSF47943 SUPFAM:SSF47836
GO:GO:0019061 GO:GO:0075732 Gene3D:1.10.10.200 InterPro:IPR017856
SUPFAM:SSF50122 SUPFAM:SSF46919 InterPro:IPR018061 Pfam:PF00077
PDB:1KJ4 PDB:1KJ7 PDBsum:1KJ4 PDBsum:1KJ7 GO:GO:0004533
GO:GO:0039651 GO:GO:0046797 Gene3D:2.30.30.10
ProteinModelPortal:P20875 SMR:P20875 EvolutionaryTrace:P20875
Uniprot:P20875
Length = 1439
Score = 115 (45.5 bits), Expect = 1.8e-05, P = 1.8e-05
Identities = 18/45 (40%), Positives = 25/45 (55%)
Query: 75 KSSIICYNCNSSGHFARNCPNDSSKRCYACHQAGHMAKECPGQTA 119
+ ++ C+NC GH ARNC K C+ C + GH KEC + A
Sbjct: 387 RKNVKCFNCGKEGHIARNCRAPRKKGCWKCGKEGHQMKECTERQA 431
>UNIPROTKB|P04594 [details] [associations]
symbol:gag "Gag polyprotein" species:11697 "Human
immunodeficiency virus type 1 (MAL ISOLATE)" [GO:0005654
"nucleoplasm" evidence=TAS] [GO:0005829 "cytosol" evidence=TAS]
[GO:0006278 "RNA-dependent DNA replication" evidence=TAS]
[GO:0010008 "endosome membrane" evidence=TAS] [GO:0016032 "viral
reproduction" evidence=TAS] [GO:0019061 "uncoating of virus"
evidence=TAS] [GO:0030260 "entry into host cell" evidence=TAS]
[GO:0046788 "egress of virus within host cell" evidence=TAS]
InterPro:IPR000071 InterPro:IPR000721 InterPro:IPR001878
InterPro:IPR008916 InterPro:IPR008919 InterPro:IPR010999
InterPro:IPR012344 Pfam:PF00098 Pfam:PF00540 Pfam:PF00607
PRINTS:PR00234 PROSITE:PS50158 SMART:SM00343 GO:GO:0005829
Reactome:REACT_116125 GO:GO:0005654 GO:GO:0030430 GO:GO:0046872
GO:GO:0005198 GO:GO:0008270 GO:GO:0003723 GO:GO:0010008
GO:GO:0020002 GO:GO:0006278 Gene3D:4.10.60.10 SUPFAM:SSF57756
GO:GO:0030260 GO:GO:0042025 GO:GO:0019028 EMBL:X04415 GO:GO:0019076
Gene3D:1.10.1200.30 Gene3D:1.10.150.90 Gene3D:1.10.375.10
SUPFAM:SSF47353 SUPFAM:SSF47943 SUPFAM:SSF47836 GO:GO:0046788
GO:GO:0019061 InterPro:IPR014817 Pfam:PF08705 PIR:T01667
ProteinModelPortal:P04594 SMR:P04594 Uniprot:P04594
Length = 505
Score = 110 (43.8 bits), Expect = 3.5e-05, P = 3.5e-05
Identities = 18/42 (42%), Positives = 23/42 (54%)
Query: 78 IICYNCNSSGHFARNCPNDSSKRCYACHQAGHMAKECPGQTA 119
I C+NC GH ARNC K C+ C + GH K+C + A
Sbjct: 396 IKCFNCGKEGHLARNCRAPRKKGCWKCGKEGHQMKDCTERQA 437
>UNIPROTKB|P04593 [details] [associations]
symbol:gag "Gag polyprotein" species:11682 "Human
immunodeficiency virus type 1 (BH5 ISOLATE)" [GO:0005654
"nucleoplasm" evidence=TAS] [GO:0005829 "cytosol" evidence=TAS]
[GO:0006278 "RNA-dependent DNA replication" evidence=TAS]
[GO:0010008 "endosome membrane" evidence=TAS] [GO:0016032 "viral
reproduction" evidence=TAS] [GO:0019061 "uncoating of virus"
evidence=TAS] [GO:0030260 "entry into host cell" evidence=TAS]
[GO:0046788 "egress of virus within host cell" evidence=TAS]
InterPro:IPR000071 InterPro:IPR000721 InterPro:IPR001878
InterPro:IPR008916 InterPro:IPR008919 InterPro:IPR010999
InterPro:IPR012344 Pfam:PF00098 Pfam:PF00540 Pfam:PF00607
PRINTS:PR00234 PROSITE:PS50158 SMART:SM00343 GO:GO:0005829
Reactome:REACT_116125 GO:GO:0005654 GO:GO:0030430 GO:GO:0046872
GO:GO:0005198 GO:GO:0008270 GO:GO:0003723 GO:GO:0010008
GO:GO:0020002 GO:GO:0006278 Gene3D:4.10.60.10 SUPFAM:SSF57756
GO:GO:0030260 GO:GO:0042025 GO:GO:0019028 GO:GO:0019076
Gene3D:1.10.1200.30 Gene3D:1.10.150.90 Gene3D:1.10.375.10
SUPFAM:SSF47353 SUPFAM:SSF47943 SUPFAM:SSF47836 GO:GO:0046788
GO:GO:0019061 InterPro:IPR014817 Pfam:PF08705 EMBL:K02012
ProteinModelPortal:P04593 SMR:P04593 Uniprot:P04593
Length = 512
Score = 110 (43.8 bits), Expect = 3.5e-05, P = 3.5e-05
Identities = 17/40 (42%), Positives = 22/40 (55%)
Query: 80 CYNCNSSGHFARNCPNDSSKRCYACHQAGHMAKECPGQTA 119
C+NC GH ARNC K C+ C + GH K+C + A
Sbjct: 392 CFNCGKEGHIARNCKAPRKKGCWKCGKEGHQMKDCTERQA 431
>UNIPROTKB|P18802 [details] [associations]
symbol:gag-pol "Gag-Pol polyprotein" species:11695 "Human
immunodeficiency virus type 1 (NDK ISOLATE)" [GO:0005654
"nucleoplasm" evidence=TAS] [GO:0005829 "cytosol" evidence=TAS]
[GO:0006278 "RNA-dependent DNA replication" evidence=TAS]
[GO:0016032 "viral reproduction" evidence=TAS] [GO:0019061
"uncoating of virus" evidence=TAS] [GO:0030260 "entry into host
cell" evidence=TAS] InterPro:IPR000071 InterPro:IPR000477
InterPro:IPR000721 InterPro:IPR001037 InterPro:IPR001584
InterPro:IPR001878 InterPro:IPR001969 InterPro:IPR001995
InterPro:IPR002156 InterPro:IPR003308 InterPro:IPR008916
InterPro:IPR008919 InterPro:IPR010659 InterPro:IPR010661
InterPro:IPR010999 InterPro:IPR012337 InterPro:IPR012344
Pfam:PF00075 Pfam:PF00078 Pfam:PF00098 Pfam:PF00540 Pfam:PF00552
Pfam:PF00607 Pfam:PF00665 Pfam:PF02022 Pfam:PF06815 Pfam:PF06817
PRINTS:PR00234 PROSITE:PS00141 PROSITE:PS50158 PROSITE:PS50175
PROSITE:PS50876 PROSITE:PS50878 PROSITE:PS50879 PROSITE:PS50994
PROSITE:PS51027 SMART:SM00343 GO:GO:0005829 Reactome:REACT_116125
GO:GO:0005654 GO:GO:0030430 GO:GO:0016020 GO:GO:0046872
GO:GO:0003677 GO:GO:0005198 GO:GO:0008270 GO:GO:0006508
GO:GO:0003723 GO:GO:0046718 GO:GO:0020002 GO:GO:0006310
GO:GO:0090305 SUPFAM:SSF53098 GO:GO:0003964 GO:GO:0006278
Gene3D:4.10.60.10 SUPFAM:SSF57756 GO:GO:0030260 GO:GO:0004190
Gene3D:2.40.70.10 InterPro:IPR021109 SUPFAM:SSF50630 GO:GO:0004523
GO:GO:0015074 GO:GO:0075713 GO:GO:0042025 GO:GO:0003887
GO:GO:0019028 EMBL:M27323 Gene3D:1.10.1200.30 Gene3D:1.10.150.90
Gene3D:1.10.375.10 SUPFAM:SSF47353 SUPFAM:SSF47943 SUPFAM:SSF47836
GO:GO:0019061 GO:GO:0075732 Gene3D:1.10.10.200 InterPro:IPR017856
SUPFAM:SSF50122 SUPFAM:SSF46919 InterPro:IPR018061 Pfam:PF00077
GO:GO:0004533 GO:GO:0039651 GO:GO:0046797 Gene3D:2.30.30.10
PIR:JQ0067 PDB:1EQI PDBsum:1EQI ProteinModelPortal:P18802
SMR:P18802 Uniprot:P18802
Length = 1432
Score = 111 (44.1 bits), Expect = 4.9e-05, P = 4.9e-05
Identities = 18/45 (40%), Positives = 25/45 (55%)
Query: 75 KSSIICYNCNSSGHFARNCPNDSSKRCYACHQAGHMAKECPGQTA 119
+ SI C+NC GH A+NC K C+ C + GH K+C + A
Sbjct: 385 RKSIKCFNCGKEGHTAKNCRAPRKKGCWKCGREGHQMKDCTERQA 429
>UNIPROTKB|P20889 [details] [associations]
symbol:gag "Gag polyprotein" species:11699 "Human
immunodeficiency virus type 1 (OYI ISOLATE)" [GO:0005654
"nucleoplasm" evidence=TAS] [GO:0005829 "cytosol" evidence=TAS]
[GO:0006278 "RNA-dependent DNA replication" evidence=TAS]
[GO:0010008 "endosome membrane" evidence=TAS] [GO:0016032 "viral
reproduction" evidence=TAS] [GO:0019061 "uncoating of virus"
evidence=TAS] [GO:0030260 "entry into host cell" evidence=TAS]
[GO:0046788 "egress of virus within host cell" evidence=TAS]
InterPro:IPR000071 InterPro:IPR000721 InterPro:IPR001878
InterPro:IPR008916 InterPro:IPR008919 InterPro:IPR010999
InterPro:IPR012344 Pfam:PF00098 Pfam:PF00540 Pfam:PF00607
PRINTS:PR00234 PROSITE:PS50158 SMART:SM00343 GO:GO:0005829
Reactome:REACT_116125 GO:GO:0005654 GO:GO:0030430 GO:GO:0046872
GO:GO:0005198 GO:GO:0008270 GO:GO:0003723 GO:GO:0010008
GO:GO:0020002 GO:GO:0006278 Gene3D:4.10.60.10 SUPFAM:SSF57756
GO:GO:0030260 GO:GO:0042025 GO:GO:0019028 EMBL:M26727 GO:GO:0019076
Gene3D:1.10.1200.30 Gene3D:1.10.150.90 Gene3D:1.10.375.10
SUPFAM:SSF47353 SUPFAM:SSF47943 SUPFAM:SSF47836 GO:GO:0046788
GO:GO:0019061 InterPro:IPR014817 Pfam:PF08705
ProteinModelPortal:P20889 SMR:P20889 Uniprot:P20889
Length = 499
Score = 109 (43.4 bits), Expect = 8.7e-05, P = 8.7e-05
Identities = 16/45 (35%), Positives = 25/45 (55%)
Query: 75 KSSIICYNCNSSGHFARNCPNDSSKRCYACHQAGHMAKECPGQTA 119
+ ++ C+NC GH A+NC K C+ C + GH K+C + A
Sbjct: 386 RKTVKCFNCGKEGHIAKNCRAPRKKGCWKCGREGHQMKDCTERQA 430
>UNIPROTKB|P12493 [details] [associations]
symbol:gag "Gag polyprotein" species:11698 "Human
immunodeficiency virus type 1 (NEW YORK-5 ISOLATE)" [GO:0005654
"nucleoplasm" evidence=TAS] [GO:0005829 "cytosol" evidence=TAS]
[GO:0006278 "RNA-dependent DNA replication" evidence=TAS]
[GO:0010008 "endosome membrane" evidence=TAS] [GO:0016032 "viral
reproduction" evidence=TAS] [GO:0019061 "uncoating of virus"
evidence=TAS] [GO:0019221 "cytokine-mediated signaling pathway"
evidence=TAS] [GO:0030260 "entry into host cell" evidence=TAS]
[GO:0046788 "egress of virus within host cell" evidence=TAS]
InterPro:IPR000071 InterPro:IPR000721 InterPro:IPR001878
InterPro:IPR008916 InterPro:IPR008919 InterPro:IPR010999
InterPro:IPR012344 Pfam:PF00098 Pfam:PF00540 Pfam:PF00607
PRINTS:PR00234 PROSITE:PS50158 SMART:SM00343 GO:GO:0005829
Reactome:REACT_116125 Reactome:REACT_6900 GO:GO:0005654
GO:GO:0030430 GO:GO:0046872 GO:GO:0005198 GO:GO:0008270
GO:GO:0019221 GO:GO:0003723 GO:GO:0010008 GO:GO:0020002
GO:GO:0006278 Gene3D:4.10.60.10 SUPFAM:SSF57756 GO:GO:0030260
GO:GO:0042025 GO:GO:0019028 EMBL:M19921 GO:GO:0019076
Gene3D:1.10.1200.30 Gene3D:1.10.150.90 Gene3D:1.10.375.10
SUPFAM:SSF47353 SUPFAM:SSF47943 SUPFAM:SSF47836 GO:GO:0046788
GO:GO:0019061 InterPro:IPR014817 Pfam:PF08705 PDB:2C55 PDBsum:2C55
DisProt:DP00101 ProteinModelPortal:P12493 SMR:P12493
EvolutionaryTrace:P12493 Uniprot:P12493
Length = 500
Score = 109 (43.4 bits), Expect = 8.8e-05, P = 8.8e-05
Identities = 16/45 (35%), Positives = 25/45 (55%)
Query: 75 KSSIICYNCNSSGHFARNCPNDSSKRCYACHQAGHMAKECPGQTA 119
+ ++ C+NC GH A+NC K C+ C + GH K+C + A
Sbjct: 387 RKTVKCFNCGKEGHIAKNCRAPRKKGCWKCGKEGHQMKDCTERQA 431
>UNIPROTKB|P12494 [details] [associations]
symbol:gag "Gag polyprotein" species:11694 "Human
immunodeficiency virus type 1 (JH3 ISOLATE)" [GO:0005654
"nucleoplasm" evidence=TAS] [GO:0005829 "cytosol" evidence=TAS]
[GO:0006278 "RNA-dependent DNA replication" evidence=TAS]
[GO:0010008 "endosome membrane" evidence=TAS] [GO:0016032 "viral
reproduction" evidence=TAS] [GO:0019061 "uncoating of virus"
evidence=TAS] [GO:0030260 "entry into host cell" evidence=TAS]
[GO:0046788 "egress of virus within host cell" evidence=TAS]
InterPro:IPR000071 InterPro:IPR000721 InterPro:IPR001878
InterPro:IPR008916 InterPro:IPR008919 InterPro:IPR010999
InterPro:IPR012344 Pfam:PF00098 Pfam:PF00540 Pfam:PF00607
PRINTS:PR00234 PROSITE:PS50158 SMART:SM00343 GO:GO:0005829
Reactome:REACT_116125 GO:GO:0005654 GO:GO:0030430 GO:GO:0046872
GO:GO:0005198 GO:GO:0008270 GO:GO:0003723 GO:GO:0010008
GO:GO:0020002 GO:GO:0006278 Gene3D:4.10.60.10 SUPFAM:SSF57756
GO:GO:0030260 GO:GO:0042025 GO:GO:0019028 GO:GO:0019076
Gene3D:1.10.1200.30 Gene3D:1.10.150.90 Gene3D:1.10.375.10
SUPFAM:SSF47353 SUPFAM:SSF47943 SUPFAM:SSF47836 GO:GO:0046788
GO:GO:0019061 InterPro:IPR014817 Pfam:PF08705 EMBL:M21137
ProteinModelPortal:P12494 SMR:P12494 Uniprot:P12494
Length = 500
Score = 109 (43.4 bits), Expect = 8.8e-05, P = 8.8e-05
Identities = 17/37 (45%), Positives = 21/37 (56%)
Query: 78 IICYNCNSSGHFARNCPNDSSKRCYACHQAGHMAKEC 114
I C+NC GH ARNC K C+ C + GH K+C
Sbjct: 390 IKCFNCGKEGHLARNCRAPRKKGCWKCGKEGHQMKDC 426
>UNIPROTKB|P35962 [details] [associations]
symbol:gag "Gag polyprotein" species:362651 "Human
immunodeficiency virus type 1 (isolate YU2)" [GO:0005654
"nucleoplasm" evidence=TAS] [GO:0005829 "cytosol" evidence=TAS]
[GO:0006278 "RNA-dependent DNA replication" evidence=TAS]
[GO:0010008 "endosome membrane" evidence=TAS] [GO:0016032 "viral
reproduction" evidence=TAS] [GO:0019061 "uncoating of virus"
evidence=TAS] [GO:0030260 "entry into host cell" evidence=TAS]
[GO:0046788 "egress of virus within host cell" evidence=TAS]
InterPro:IPR000071 InterPro:IPR000721 InterPro:IPR001878
InterPro:IPR008916 InterPro:IPR008919 InterPro:IPR010999
InterPro:IPR012344 Pfam:PF00098 Pfam:PF00540 Pfam:PF00607
PRINTS:PR00234 PROSITE:PS50158 SMART:SM00343 GO:GO:0005829
Reactome:REACT_116125 GO:GO:0005654 GO:GO:0030430 GO:GO:0046872
GO:GO:0005198 GO:GO:0008270 GO:GO:0003723 GO:GO:0010008
GO:GO:0020002 GO:GO:0006278 Gene3D:4.10.60.10 SUPFAM:SSF57756
GO:GO:0030260 GO:GO:0042025 GO:GO:0019028 EMBL:M93258 GO:GO:0019076
Gene3D:1.10.1200.30 Gene3D:1.10.150.90 Gene3D:1.10.375.10
SUPFAM:SSF47353 SUPFAM:SSF47943 SUPFAM:SSF47836 GO:GO:0046788
GO:GO:0019061 InterPro:IPR014817 Pfam:PF08705 PIR:A44001 PDB:1F6U
PDB:1MFS PDB:2R05 PDBsum:1F6U PDBsum:1MFS PDBsum:2R05
ProteinModelPortal:P35962 SMR:P35962 EvolutionaryTrace:P35962
Uniprot:P35962
Length = 500
Score = 109 (43.4 bits), Expect = 8.8e-05, P = 8.8e-05
Identities = 16/45 (35%), Positives = 25/45 (55%)
Query: 75 KSSIICYNCNSSGHFARNCPNDSSKRCYACHQAGHMAKECPGQTA 119
+ ++ C+NC GH A+NC K C+ C + GH K+C + A
Sbjct: 387 RKTVKCFNCGKEGHIAKNCRAPRKKGCWKCGKEGHQMKDCTERQA 431
>UNIPROTKB|Q70622 [details] [associations]
symbol:gag "Gag polyprotein" species:82834 "Human
immunodeficiency virus type 1 lw12.3 isolate" [GO:0005654
"nucleoplasm" evidence=TAS] [GO:0005829 "cytosol" evidence=TAS]
[GO:0006278 "RNA-dependent DNA replication" evidence=TAS]
[GO:0010008 "endosome membrane" evidence=TAS] [GO:0016032 "viral
reproduction" evidence=TAS] [GO:0019061 "uncoating of virus"
evidence=TAS] [GO:0030260 "entry into host cell" evidence=TAS]
[GO:0046788 "egress of virus within host cell" evidence=TAS]
InterPro:IPR000071 InterPro:IPR000721 InterPro:IPR001878
InterPro:IPR008916 InterPro:IPR008919 InterPro:IPR010999
InterPro:IPR012344 Pfam:PF00098 Pfam:PF00540 Pfam:PF00607
PRINTS:PR00234 PROSITE:PS50158 SMART:SM00343 GO:GO:0005829
Reactome:REACT_116125 GO:GO:0005654 GO:GO:0030430 GO:GO:0046872
GO:GO:0005198 GO:GO:0008270 GO:GO:0003723 GO:GO:0010008
GO:GO:0020002 GO:GO:0006278 Gene3D:4.10.60.10 SUPFAM:SSF57756
GO:GO:0030260 GO:GO:0042025 GO:GO:0019028 EMBL:U12055 GO:GO:0019076
Gene3D:1.10.1200.30 Gene3D:1.10.150.90 Gene3D:1.10.375.10
SUPFAM:SSF47353 SUPFAM:SSF47943 SUPFAM:SSF47836 GO:GO:0046788
GO:GO:0019061 InterPro:IPR014817 Pfam:PF08705 PDB:1HVN PDB:1HVO
PDB:1U57 PDB:2ZNF PDBsum:1HVN PDBsum:1HVO PDBsum:1U57 PDBsum:2ZNF
ProteinModelPortal:Q70622 SMR:Q70622 EvolutionaryTrace:Q70622
Uniprot:Q70622
Length = 500
Score = 109 (43.4 bits), Expect = 8.8e-05, P = 8.8e-05
Identities = 17/40 (42%), Positives = 22/40 (55%)
Query: 80 CYNCNSSGHFARNCPNDSSKRCYACHQAGHMAKECPGQTA 119
C+NC GH ARNC K C+ C + GH K+C + A
Sbjct: 392 CFNCGKEGHIARNCRAPRKKGCWKCGKEGHQMKDCTERQA 431
>UNIPROTKB|Q72497 [details] [associations]
symbol:gag "Gag polyprotein" species:11676 "Human
immunodeficiency virus 1" [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR000071 InterPro:IPR000721
InterPro:IPR001878 InterPro:IPR008916 InterPro:IPR008919
InterPro:IPR010999 InterPro:IPR012344 Pfam:PF00098 Pfam:PF00540
Pfam:PF00607 PRINTS:PR00234 PROSITE:PS50158 SMART:SM00343
GO:GO:0030430 GO:GO:0046872 GO:GO:0005198 GO:GO:0008270
GO:GO:0003723 Gene3D:4.10.60.10 SUPFAM:SSF57756 GO:GO:0042025
GO:GO:0019028 GO:GO:0019076 Gene3D:1.10.1200.30 Gene3D:1.10.150.90
Gene3D:1.10.375.10 SUPFAM:SSF47353 SUPFAM:SSF47943 SUPFAM:SSF47836
InterPro:IPR014817 Pfam:PF08705 PDB:1M9D PDBsum:1M9D PDB:1M9C
PDB:1M9E PDB:1M9F PDB:1M9X PDB:1M9Y PDBsum:1M9C PDBsum:1M9E
PDBsum:1M9F PDBsum:1M9X PDBsum:1M9Y PDB:3OBU PDB:3OBX PDBsum:3OBU
PDBsum:3OBX EMBL:U26942 PDB:1L6N PDB:2BUO PDB:2JMG PDB:2NV3
PDBsum:1L6N PDBsum:2BUO PDBsum:2JMG PDBsum:2NV3
ProteinModelPortal:Q72497 SMR:Q72497 DIP:DIP-36777N IntAct:Q72497
EvolutionaryTrace:Q72497 Uniprot:Q72497
Length = 500
Score = 109 (43.4 bits), Expect = 8.8e-05, P = 8.8e-05
Identities = 16/45 (35%), Positives = 25/45 (55%)
Query: 75 KSSIICYNCNSSGHFARNCPNDSSKRCYACHQAGHMAKECPGQTA 119
+ ++ C+NC GH A+NC K C+ C + GH K+C + A
Sbjct: 387 RKTVKCFNCGKEGHIAKNCRAPRKKGCWKCGKEGHQMKDCTERQA 431
>UNIPROTKB|P12495 [details] [associations]
symbol:gag "Gag polyprotein" species:11683 "Human
immunodeficiency virus type 1 (Z2/CDC-Z34 ISOLATE)" [GO:0005654
"nucleoplasm" evidence=TAS] [GO:0005829 "cytosol" evidence=TAS]
[GO:0006278 "RNA-dependent DNA replication" evidence=TAS]
[GO:0010008 "endosome membrane" evidence=TAS] [GO:0016032 "viral
reproduction" evidence=TAS] [GO:0019061 "uncoating of virus"
evidence=TAS] [GO:0030260 "entry into host cell" evidence=TAS]
[GO:0046788 "egress of virus within host cell" evidence=TAS]
InterPro:IPR000071 InterPro:IPR000721 InterPro:IPR001878
InterPro:IPR008916 InterPro:IPR008919 InterPro:IPR010999
InterPro:IPR012344 Pfam:PF00098 Pfam:PF00540 Pfam:PF00607
PRINTS:PR00234 PROSITE:PS50158 SMART:SM00343 GO:GO:0005829
Reactome:REACT_116125 GO:GO:0005654 GO:GO:0030430 PDB:1SJE PDB:1SJH
PDBsum:1SJE PDBsum:1SJH GO:GO:0046872 GO:GO:0005198 GO:GO:0008270
GO:GO:0003723 GO:GO:0010008 GO:GO:0020002 GO:GO:0006278
Gene3D:4.10.60.10 SUPFAM:SSF57756 GO:GO:0030260 GO:GO:0042025
GO:GO:0019028 EMBL:M22639 GO:GO:0019076 Gene3D:1.10.1200.30
Gene3D:1.10.150.90 Gene3D:1.10.375.10 SUPFAM:SSF47353
SUPFAM:SSF47943 SUPFAM:SSF47836 GO:GO:0046788 GO:GO:0019061
InterPro:IPR014817 Pfam:PF08705 PIR:S54377 PDB:3D3T PDBsum:3D3T
ProteinModelPortal:P12495 SMR:P12495 EvolutionaryTrace:P12495
Uniprot:P12495
Length = 501
Score = 109 (43.4 bits), Expect = 8.8e-05, P = 8.8e-05
Identities = 17/45 (37%), Positives = 25/45 (55%)
Query: 75 KSSIICYNCNSSGHFARNCPNDSSKRCYACHQAGHMAKECPGQTA 119
+ +I C+NC GH A+NC K C+ C + GH K+C + A
Sbjct: 389 RKTIKCFNCGKEGHIAKNCRAPRRKGCWKCGKEGHQLKDCTERQA 433
>UNIPROTKB|P03349 [details] [associations]
symbol:gag "Gag polyprotein" species:11685 "HIV-1
M:B_ARV2/SF2" [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0005829
"cytosol" evidence=TAS] [GO:0006278 "RNA-dependent DNA replication"
evidence=TAS] [GO:0010008 "endosome membrane" evidence=TAS]
[GO:0016032 "viral reproduction" evidence=TAS] [GO:0019061
"uncoating of virus" evidence=TAS] [GO:0030260 "entry into host
cell" evidence=TAS] [GO:0046788 "egress of virus within host cell"
evidence=TAS] InterPro:IPR000071 InterPro:IPR000721
InterPro:IPR001878 InterPro:IPR008916 InterPro:IPR008919
InterPro:IPR010999 InterPro:IPR012344 Pfam:PF00098 Pfam:PF00540
Pfam:PF00607 PRINTS:PR00234 PROSITE:PS50158 SMART:SM00343
GO:GO:0005829 Reactome:REACT_116125 GO:GO:0005654 GO:GO:0030430
GO:GO:0046872 GO:GO:0005198 GO:GO:0008270 GO:GO:0003723
GO:GO:0010008 GO:GO:0020002 GO:GO:0006278 Gene3D:4.10.60.10
SUPFAM:SSF57756 GO:GO:0030260 GO:GO:0042025 GO:GO:0019028
EMBL:K02007 GO:GO:0019076 Gene3D:1.10.1200.30 Gene3D:1.10.150.90
Gene3D:1.10.375.10 SUPFAM:SSF47353 SUPFAM:SSF47943 SUPFAM:SSF47836
PIR:A03947 ProteinModelPortal:P03349 SMR:P03349 GO:GO:0046788
GO:GO:0019061 InterPro:IPR014817 Pfam:PF08705 Uniprot:P03349
Length = 502
Score = 109 (43.4 bits), Expect = 8.8e-05, P = 8.8e-05
Identities = 16/45 (35%), Positives = 25/45 (55%)
Query: 75 KSSIICYNCNSSGHFARNCPNDSSKRCYACHQAGHMAKECPGQTA 119
+ ++ C+NC GH A+NC K C+ C + GH K+C + A
Sbjct: 389 RKTVKCFNCGKEGHIAKNCRAPRKKGCWRCGREGHQMKDCTERQA 433
>UNIPROTKB|P03348 [details] [associations]
symbol:gag "Gag polyprotein" species:11686 "Human
immunodeficiency virus type 1 (BRU ISOLATE)" [GO:0005654
"nucleoplasm" evidence=TAS] [GO:0005829 "cytosol" evidence=TAS]
[GO:0006278 "RNA-dependent DNA replication" evidence=TAS]
[GO:0010008 "endosome membrane" evidence=TAS] [GO:0016032 "viral
reproduction" evidence=TAS] [GO:0019061 "uncoating of virus"
evidence=TAS] [GO:0030260 "entry into host cell" evidence=TAS]
[GO:0046788 "egress of virus within host cell" evidence=TAS]
InterPro:IPR000071 InterPro:IPR000721 InterPro:IPR001878
InterPro:IPR008916 InterPro:IPR008919 InterPro:IPR010999
InterPro:IPR012344 Pfam:PF00098 Pfam:PF00540 Pfam:PF00607
PRINTS:PR00234 PROSITE:PS50158 SMART:SM00343 GO:GO:0005829
Reactome:REACT_116125 GO:GO:0005654 GO:GO:0030430 GO:GO:0046872
GO:GO:0005198 GO:GO:0008270 GO:GO:0003723 GO:GO:0010008
GO:GO:0020002 GO:GO:0006278 Gene3D:4.10.60.10 SUPFAM:SSF57756
GO:GO:0030260 GO:GO:0042025 GO:GO:0019028 EMBL:K02013 GO:GO:0019076
Gene3D:1.10.1200.30 Gene3D:1.10.150.90 Gene3D:1.10.375.10
SUPFAM:SSF47353 SUPFAM:SSF47943 SUPFAM:SSF47836 GO:GO:0046788
GO:GO:0019061 InterPro:IPR014817 Pfam:PF08705
ProteinModelPortal:P03348 SMR:P03348 Uniprot:P03348
Length = 512
Score = 109 (43.4 bits), Expect = 9.1e-05, P = 9.1e-05
Identities = 17/40 (42%), Positives = 22/40 (55%)
Query: 80 CYNCNSSGHFARNCPNDSSKRCYACHQAGHMAKECPGQTA 119
C+NC GH ARNC K C+ C + GH K+C + A
Sbjct: 392 CFNCGKEGHIARNCRAPRKKGCWKCGKEGHQMKDCTERQA 431
>UNIPROTKB|P12498 [details] [associations]
symbol:gag-pol "Gag-Pol polyprotein" species:11694 "Human
immunodeficiency virus type 1 (JH3 ISOLATE)" [GO:0005654
"nucleoplasm" evidence=TAS] [GO:0005829 "cytosol" evidence=TAS]
[GO:0006278 "RNA-dependent DNA replication" evidence=TAS]
[GO:0016032 "viral reproduction" evidence=TAS] [GO:0019061
"uncoating of virus" evidence=TAS] [GO:0030260 "entry into host
cell" evidence=TAS] InterPro:IPR000071 InterPro:IPR000721
InterPro:IPR001878 InterPro:IPR001969 InterPro:IPR001995
InterPro:IPR008916 InterPro:IPR008919 InterPro:IPR010999
InterPro:IPR012344 Pfam:PF00098 Pfam:PF00540 Pfam:PF00607
PRINTS:PR00234 PROSITE:PS00141 PROSITE:PS50158 PROSITE:PS50175
SMART:SM00343 GO:GO:0005829 Reactome:REACT_116125 GO:GO:0005654
GO:GO:0030430 GO:GO:0016020 GO:GO:0046872 GO:GO:0005198
GO:GO:0008270 GO:GO:0006508 GO:GO:0003723 GO:GO:0020002
GO:GO:0006278 Gene3D:4.10.60.10 SUPFAM:SSF57756 GO:GO:0030260
GO:GO:0004190 Gene3D:2.40.70.10 InterPro:IPR021109 SUPFAM:SSF50630
GO:GO:0042025 GO:GO:0019028 Gene3D:1.10.1200.30 Gene3D:1.10.150.90
Gene3D:1.10.375.10 SUPFAM:SSF47353 SUPFAM:SSF47943 SUPFAM:SSF47836
GO:GO:0019061 EMBL:M21137 InterPro:IPR018061 Pfam:PF00077
GO:GO:0046797 ProteinModelPortal:P12498 SMR:P12498 Uniprot:P12498
Length = 532
Score = 109 (43.4 bits), Expect = 9.6e-05, P = 9.6e-05
Identities = 17/37 (45%), Positives = 21/37 (56%)
Query: 78 IICYNCNSSGHFARNCPNDSSKRCYACHQAGHMAKEC 114
I C+NC GH ARNC K C+ C + GH K+C
Sbjct: 390 IKCFNCGKEGHLARNCRAPRKKGCWKCGKEGHQMKDC 426
>UNIPROTKB|P04588 [details] [associations]
symbol:gag-pol "Gag-Pol polyprotein" species:11697 "Human
immunodeficiency virus type 1 (MAL ISOLATE)" [GO:0005654
"nucleoplasm" evidence=TAS] [GO:0005829 "cytosol" evidence=TAS]
[GO:0006278 "RNA-dependent DNA replication" evidence=TAS]
[GO:0016032 "viral reproduction" evidence=TAS] [GO:0019061
"uncoating of virus" evidence=TAS] [GO:0030260 "entry into host
cell" evidence=TAS] InterPro:IPR000071 InterPro:IPR000477
InterPro:IPR000721 InterPro:IPR001037 InterPro:IPR001584
InterPro:IPR001878 InterPro:IPR001969 InterPro:IPR001995
InterPro:IPR002156 InterPro:IPR003308 InterPro:IPR008916
InterPro:IPR008919 InterPro:IPR010659 InterPro:IPR010661
InterPro:IPR010999 InterPro:IPR012337 InterPro:IPR012344
Pfam:PF00075 Pfam:PF00078 Pfam:PF00098 Pfam:PF00540 Pfam:PF00552
Pfam:PF00607 Pfam:PF00665 Pfam:PF02022 Pfam:PF06815 Pfam:PF06817
PRINTS:PR00234 PROSITE:PS00141 PROSITE:PS50158 PROSITE:PS50175
PROSITE:PS50876 PROSITE:PS50878 PROSITE:PS50879 PROSITE:PS50994
PROSITE:PS51027 SMART:SM00343 GO:GO:0005829 Reactome:REACT_116125
GO:GO:0005654 GO:GO:0030430 PDB:1HHJ PDBsum:1HHJ GO:GO:0016020
GO:GO:0046872 GO:GO:0003677 GO:GO:0005198 GO:GO:0008270
GO:GO:0006508 GO:GO:0003723 GO:GO:0046718 GO:GO:0020002
GO:GO:0006310 GO:GO:0090305 SUPFAM:SSF53098 GO:GO:0003964
GO:GO:0006278 Gene3D:4.10.60.10 SUPFAM:SSF57756 GO:GO:0030260
GO:GO:0004190 Gene3D:2.40.70.10 InterPro:IPR021109 SUPFAM:SSF50630
GO:GO:0004523 GO:GO:0015074 GO:GO:0075713 GO:GO:0042025
GO:GO:0003887 GO:GO:0019028 EMBL:X04415 Gene3D:1.10.1200.30
Gene3D:1.10.150.90 Gene3D:1.10.375.10 SUPFAM:SSF47353
SUPFAM:SSF47943 SUPFAM:SSF47836 GO:GO:0019061 GO:GO:0075732
Gene3D:1.10.10.200 InterPro:IPR017856 SUPFAM:SSF50122
SUPFAM:SSF46919 InterPro:IPR018061 Pfam:PF00077 GO:GO:0004533
GO:GO:0039651 GO:GO:0046797 Gene3D:2.30.30.10 PIR:T01668 PDB:3IXO
PDBsum:3IXO ProteinModelPortal:P04588 SMR:P04588
EvolutionaryTrace:P04588 Uniprot:P04588
Length = 1440
Score = 110 (43.8 bits), Expect = 0.00013, P = 0.00013
Identities = 18/42 (42%), Positives = 23/42 (54%)
Query: 78 IICYNCNSSGHFARNCPNDSSKRCYACHQAGHMAKECPGQTA 119
I C+NC GH ARNC K C+ C + GH K+C + A
Sbjct: 396 IKCFNCGKEGHLARNCRAPRKKGCWKCGKEGHQMKDCTERQA 437
>UNIPROTKB|P04587 [details] [associations]
symbol:gag-pol "Gag-Pol polyprotein" species:11682 "Human
immunodeficiency virus type 1 (BH5 ISOLATE)" [GO:0005654
"nucleoplasm" evidence=TAS] [GO:0005829 "cytosol" evidence=TAS]
[GO:0006278 "RNA-dependent DNA replication" evidence=TAS]
[GO:0016032 "viral reproduction" evidence=TAS] [GO:0019061
"uncoating of virus" evidence=TAS] [GO:0030260 "entry into host
cell" evidence=TAS] InterPro:IPR000071 InterPro:IPR000477
InterPro:IPR000721 InterPro:IPR001037 InterPro:IPR001584
InterPro:IPR001878 InterPro:IPR001969 InterPro:IPR001995
InterPro:IPR002156 InterPro:IPR003308 InterPro:IPR008916
InterPro:IPR008919 InterPro:IPR010659 InterPro:IPR010661
InterPro:IPR010999 InterPro:IPR012337 InterPro:IPR012344
Pfam:PF00075 Pfam:PF00078 Pfam:PF00098 Pfam:PF00540 Pfam:PF00552
Pfam:PF00607 Pfam:PF00665 Pfam:PF02022 Pfam:PF06815 Pfam:PF06817
PRINTS:PR00234 PROSITE:PS00141 PROSITE:PS50158 PROSITE:PS50175
PROSITE:PS50876 PROSITE:PS50878 PROSITE:PS50879 PROSITE:PS50994
PROSITE:PS51027 SMART:SM00343 GO:GO:0005829 Reactome:REACT_116125
GO:GO:0005654 GO:GO:0030430 GO:GO:0016020 GO:GO:0046872
GO:GO:0003677 GO:GO:0005198 GO:GO:0008270 GO:GO:0006508
GO:GO:0003723 GO:GO:0046718 GO:GO:0020002 GO:GO:0006310
GO:GO:0090305 SUPFAM:SSF53098 GO:GO:0003964 GO:GO:0006278
Gene3D:4.10.60.10 SUPFAM:SSF57756 GO:GO:0030260 GO:GO:0004190
Gene3D:2.40.70.10 InterPro:IPR021109 SUPFAM:SSF50630 GO:GO:0004523
GO:GO:0015074 GO:GO:0075713 GO:GO:0042025 GO:GO:0003887
GO:GO:0019028 Gene3D:1.10.1200.30 Gene3D:1.10.150.90
Gene3D:1.10.375.10 SUPFAM:SSF47353 SUPFAM:SSF47943 SUPFAM:SSF47836
GO:GO:0019061 EMBL:K02012 GO:GO:0075732 Gene3D:1.10.10.200
InterPro:IPR017856 SUPFAM:SSF50122 SUPFAM:SSF46919
InterPro:IPR018061 Pfam:PF00077 GO:GO:0004533 GO:GO:0039651
GO:GO:0046797 Gene3D:2.30.30.10 PDB:1BDL PDB:1BDQ PDB:1BDR PDB:1FEJ
PDB:1FF0 PDB:1FFF PDB:1FFI PDB:1FG6 PDB:1FG8 PDB:1FGC PDB:1G2K
PDB:1HPV PDB:1HVJ PDB:1HVS PDB:1K1T PDB:1K1U PDB:1K2B PDB:1K2C
PDB:1ODX PDB:1Q9P PDB:1TCX PDB:1WJE PDB:1WJF PDB:2AOC PDB:2AOD
PDB:2AOE PDB:2AOF PDB:2AOG PDB:2AOH PDB:2AOI PDB:2AOJ PDB:2AVM
PDB:2AVO PDB:2AVQ PDB:2AVS PDB:2AVV PDB:2BPV PDB:2BPW PDB:2BPX
PDB:2BPY PDB:2BPZ PDB:2F80 PDB:2F81 PDB:2F8G PDB:2G3L PDB:2NMY
PDB:2NMZ PDB:2NNK PDB:2NNP PDB:2R38 PDB:2R3T PDB:2R3W PDB:2Z54
PDB:3B7V PDB:3B80 PDB:3BC4 PDB:3BGB PDB:3BGC PDB:3CYW PDB:3CYX
PDB:3D1X PDB:3D1Y PDB:3D1Z PDB:3D20 PDB:3OXC PDBsum:1BDL
PDBsum:1BDQ PDBsum:1BDR PDBsum:1FEJ PDBsum:1FF0 PDBsum:1FFF
PDBsum:1FFI PDBsum:1FG6 PDBsum:1FG8 PDBsum:1FGC PDBsum:1G2K
PDBsum:1HPV PDBsum:1HVJ PDBsum:1HVS PDBsum:1K1T PDBsum:1K1U
PDBsum:1K2B PDBsum:1K2C PDBsum:1ODX PDBsum:1Q9P PDBsum:1TCX
PDBsum:1WJE PDBsum:1WJF PDBsum:2AOC PDBsum:2AOD PDBsum:2AOE
PDBsum:2AOF PDBsum:2AOG PDBsum:2AOH PDBsum:2AOI PDBsum:2AOJ
PDBsum:2AVM PDBsum:2AVO PDBsum:2AVQ PDBsum:2AVS PDBsum:2AVV
PDBsum:2BPV PDBsum:2BPW PDBsum:2BPX PDBsum:2BPY PDBsum:2BPZ
PDBsum:2F80 PDBsum:2F81 PDBsum:2F8G PDBsum:2G3L PDBsum:2NMY
PDBsum:2NMZ PDBsum:2NNK PDBsum:2NNP PDBsum:2R38 PDBsum:2R3T
PDBsum:2R3W PDBsum:2Z54 PDBsum:3B7V PDBsum:3B80 PDBsum:3BC4
PDBsum:3BGB PDBsum:3BGC PDBsum:3CYW PDBsum:3CYX PDBsum:3D1X
PDBsum:3D1Y PDBsum:3D1Z PDBsum:3D20 PDBsum:3OXC
ProteinModelPortal:P04587 SMR:P04587 EvolutionaryTrace:P04587
Uniprot:P04587
Length = 1447
Score = 110 (43.8 bits), Expect = 0.00013, P = 0.00013
Identities = 17/40 (42%), Positives = 22/40 (55%)
Query: 80 CYNCNSSGHFARNCPNDSSKRCYACHQAGHMAKECPGQTA 119
C+NC GH ARNC K C+ C + GH K+C + A
Sbjct: 392 CFNCGKEGHIARNCKAPRKKGCWKCGKEGHQMKDCTERQA 431
>UNIPROTKB|F1PQG8 [details] [associations]
symbol:ZCCHC3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR001878
Pfam:PF00098 PROSITE:PS50158 SMART:SM00343 GO:GO:0046872
GO:GO:0008270 GO:GO:0003676 Gene3D:4.10.60.10 SUPFAM:SSF57756
GeneTree:ENSGT00530000063983 EMBL:AAEX03013862 EMBL:AAEX03013863
Ensembl:ENSCAFT00000039080 OMA:ILIRNET Uniprot:F1PQG8
Length = 280
Score = 106 (42.4 bits), Expect = 0.00014, P = 0.00014
Identities = 21/73 (28%), Positives = 32/73 (43%)
Query: 39 CYKCNNYGHFARECATESVTCYNCSGQGHVAKDCTVKSSIICYNCNSSGHFARNCPN--D 96
C+KC + H + C + C+ C +GH++ C + I+C C GH CP
Sbjct: 212 CFKCGSRTHMSGSCTQDR--CFRCGEEGHLSPYC--RKGIVCNLCGKRGHAFAQCPKAVH 267
Query: 97 SSKRCYACHQAGH 109
+S AGH
Sbjct: 268 NSVAAQLTGVAGH 280
>UNIPROTKB|P03347 [details] [associations]
symbol:gag "Gag polyprotein" species:11678 "Human
immunodeficiency virus type 1 BH10" [GO:0005515 "protein binding"
evidence=IPI] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0005829
"cytosol" evidence=TAS] [GO:0006278 "RNA-dependent DNA replication"
evidence=TAS] [GO:0010008 "endosome membrane" evidence=TAS]
[GO:0016032 "viral reproduction" evidence=TAS] [GO:0019061
"uncoating of virus" evidence=TAS] [GO:0030260 "entry into host
cell" evidence=TAS] [GO:0046788 "egress of virus within host cell"
evidence=TAS] InterPro:IPR000071 InterPro:IPR000721
InterPro:IPR001878 InterPro:IPR008916 InterPro:IPR008919
InterPro:IPR010999 InterPro:IPR012344 Pfam:PF00098 Pfam:PF00540
Pfam:PF00607 PRINTS:PR00234 PROSITE:PS50158 SMART:SM00343
GO:GO:0005829 Reactome:REACT_116125 GO:GO:0005654 GO:GO:0030430
GO:GO:0046872 GO:GO:0005198 GO:GO:0008270 GO:GO:0003723
GO:GO:0010008 GO:GO:0020002 GO:GO:0006278 Gene3D:4.10.60.10
SUPFAM:SSF57756 GO:GO:0030260 GO:GO:0042025 GO:GO:0019028
EMBL:M15654 EMBL:K02083 EMBL:X01762 GO:GO:0019076
Gene3D:1.10.1200.30 Gene3D:1.10.150.90 Gene3D:1.10.375.10
SUPFAM:SSF47353 SUPFAM:SSF47943 SUPFAM:SSF47836 GO:GO:0046788
GO:GO:0019061 InterPro:IPR014817 Pfam:PF08705 PIR:A03945 PIR:A03948
ProteinModelPortal:P03347 SMR:P03347 IntAct:P03347 Uniprot:P03347
Length = 512
Score = 108 (43.1 bits), Expect = 0.00015, P = 0.00015
Identities = 17/45 (37%), Positives = 24/45 (53%)
Query: 75 KSSIICYNCNSSGHFARNCPNDSSKRCYACHQAGHMAKECPGQTA 119
+ + C+NC GH ARNC K C+ C + GH K+C + A
Sbjct: 387 RKMVKCFNCGKEGHTARNCRAPRKKGCWKCGKEGHQMKDCTERQA 431
>UNIPROTKB|J9P281 [details] [associations]
symbol:ZCCHC3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR001878
Pfam:PF00098 PROSITE:PS50158 SMART:SM00343 GO:GO:0046872
GO:GO:0008270 GO:GO:0003676 Gene3D:4.10.60.10 SUPFAM:SSF57756
GeneTree:ENSGT00530000063983 EMBL:AAEX03013862 EMBL:AAEX03013863
Ensembl:ENSCAFT00000048621 Uniprot:J9P281
Length = 291
Score = 106 (42.4 bits), Expect = 0.00015, P = 0.00015
Identities = 21/73 (28%), Positives = 32/73 (43%)
Query: 39 CYKCNNYGHFARECATESVTCYNCSGQGHVAKDCTVKSSIICYNCNSSGHFARNCPN--D 96
C+KC + H + C + C+ C +GH++ C + I+C C GH CP
Sbjct: 223 CFKCGSRTHMSGSCTQDR--CFRCGEEGHLSPYC--RKGIVCNLCGKRGHAFAQCPKAVH 278
Query: 97 SSKRCYACHQAGH 109
+S AGH
Sbjct: 279 NSVAAQLTGVAGH 291
>UNIPROTKB|P24736 [details] [associations]
symbol:gag "Gag polyprotein" species:11703 "Human
immunodeficiency virus type 1 (STRAIN UGANDAN / ISOLATE U455)"
[GO:0005654 "nucleoplasm" evidence=TAS] [GO:0005829 "cytosol"
evidence=TAS] [GO:0006278 "RNA-dependent DNA replication"
evidence=TAS] [GO:0010008 "endosome membrane" evidence=TAS]
[GO:0016032 "viral reproduction" evidence=TAS] [GO:0019061
"uncoating of virus" evidence=TAS] [GO:0030260 "entry into host
cell" evidence=TAS] [GO:0046788 "egress of virus within host cell"
evidence=TAS] InterPro:IPR000071 InterPro:IPR000721
InterPro:IPR001878 InterPro:IPR008916 InterPro:IPR008919
InterPro:IPR010999 InterPro:IPR012344 Pfam:PF00098 Pfam:PF00540
Pfam:PF00607 PRINTS:PR00234 PROSITE:PS50158 SMART:SM00343
GO:GO:0005829 Reactome:REACT_116125 GO:GO:0005654 GO:GO:0030430
GO:GO:0046872 GO:GO:0005198 GO:GO:0008270 GO:GO:0003723
GO:GO:0010008 GO:GO:0020002 GO:GO:0006278 Gene3D:4.10.60.10
SUPFAM:SSF57756 GO:GO:0030260 GO:GO:0042025 GO:GO:0019028
GO:GO:0019076 Gene3D:1.10.1200.30 Gene3D:1.10.150.90
Gene3D:1.10.375.10 SUPFAM:SSF47353 SUPFAM:SSF47943 SUPFAM:SSF47836
GO:GO:0046788 GO:GO:0019061 InterPro:IPR014817 Pfam:PF08705
EMBL:M62320 PDB:1NCP PDBsum:1NCP ProteinModelPortal:P24736
SMR:P24736 EvolutionaryTrace:P24736 Uniprot:P24736
Length = 493
Score = 107 (42.7 bits), Expect = 0.00021, P = 0.00021
Identities = 17/42 (40%), Positives = 23/42 (54%)
Query: 78 IICYNCNSSGHFARNCPNDSSKRCYACHQAGHMAKECPGQTA 119
I C+NC GH A+NC K C+ C + GH K+C + A
Sbjct: 384 IKCFNCGKEGHLAKNCRAPRKKGCWKCGKEGHQMKDCTERQA 425
>UNIPROTKB|P04591 [details] [associations]
symbol:gag "Gag polyprotein" species:11706 "HIV-1
M:B_HXB2R" [GO:0005515 "protein binding" evidence=IPI] [GO:0005654
"nucleoplasm" evidence=TAS] [GO:0005829 "cytosol" evidence=TAS]
[GO:0006278 "RNA-dependent DNA replication" evidence=TAS]
[GO:0010008 "endosome membrane" evidence=TAS] [GO:0016032 "viral
reproduction" evidence=TAS] [GO:0019061 "uncoating of virus"
evidence=TAS] [GO:0030260 "entry into host cell" evidence=TAS]
[GO:0046788 "egress of virus within host cell" evidence=TAS]
InterPro:IPR000071 InterPro:IPR000721 InterPro:IPR001878
InterPro:IPR008916 InterPro:IPR008919 InterPro:IPR010999
InterPro:IPR012344 Pfam:PF00098 Pfam:PF00540 Pfam:PF00607
PRINTS:PR00234 PROSITE:PS50158 SMART:SM00343 GO:GO:0005829
Reactome:REACT_116125 GO:GO:0005654 GO:GO:0030430 GO:GO:0046872
GO:GO:0005198 GO:GO:0008270 GO:GO:0003723 GO:GO:0010008
GO:GO:0020002 GO:GO:0006278 Gene3D:4.10.60.10 SUPFAM:SSF57756
GO:GO:0030260 GO:GO:0042025 GO:GO:0019028 EMBL:K03455 GO:GO:0019076
Gene3D:1.10.1200.30 Gene3D:1.10.150.90 Gene3D:1.10.375.10
SUPFAM:SSF47353 SUPFAM:SSF47943 SUPFAM:SSF47836 GO:GO:0046788
GO:GO:0019061 InterPro:IPR014817 Pfam:PF08705 RefSeq:NP_057850.1
PDB:1TSQ PDB:1TSU PDBsum:1TSQ PDBsum:1TSU ProteinModelPortal:P04591
SMR:P04591 IntAct:P04591 EvolutionaryTrace:P04591 Uniprot:P04591
Length = 500
Score = 107 (42.7 bits), Expect = 0.00022, P = 0.00022
Identities = 17/40 (42%), Positives = 22/40 (55%)
Query: 80 CYNCNSSGHFARNCPNDSSKRCYACHQAGHMAKECPGQTA 119
C+NC GH ARNC K C+ C + GH K+C + A
Sbjct: 392 CFNCGKEGHTARNCRAPRKKGCWKCGKEGHQMKDCTERQA 431
>UNIPROTKB|P04592 [details] [associations]
symbol:gag "Gag polyprotein" species:11689 "Human
immunodeficiency virus type 1 (ELI ISOLATE)" [GO:0005654
"nucleoplasm" evidence=TAS] [GO:0005829 "cytosol" evidence=TAS]
[GO:0006278 "RNA-dependent DNA replication" evidence=TAS]
[GO:0010008 "endosome membrane" evidence=TAS] [GO:0016032 "viral
reproduction" evidence=TAS] [GO:0019061 "uncoating of virus"
evidence=TAS] [GO:0030260 "entry into host cell" evidence=TAS]
[GO:0046788 "egress of virus within host cell" evidence=TAS]
InterPro:IPR000071 InterPro:IPR000721 InterPro:IPR001878
InterPro:IPR008916 InterPro:IPR008919 InterPro:IPR010999
InterPro:IPR012344 Pfam:PF00098 Pfam:PF00540 Pfam:PF00607
PRINTS:PR00234 PROSITE:PS50158 SMART:SM00343 GO:GO:0005829
Reactome:REACT_116125 GO:GO:0005654 GO:GO:0030430 GO:GO:0046872
GO:GO:0005198 GO:GO:0008270 GO:GO:0003723 GO:GO:0010008
GO:GO:0020002 GO:GO:0006278 Gene3D:4.10.60.10 SUPFAM:SSF57756
GO:GO:0030260 GO:GO:0042025 GO:GO:0019028 EMBL:K03454 GO:GO:0019076
Gene3D:1.10.1200.30 Gene3D:1.10.150.90 Gene3D:1.10.375.10
SUPFAM:SSF47353 SUPFAM:SSF47943 SUPFAM:SSF47836 GO:GO:0046788
GO:GO:0019061 InterPro:IPR014817 Pfam:PF08705
ProteinModelPortal:P04592 SMR:P04592 Uniprot:P04592
Length = 500
Score = 107 (42.7 bits), Expect = 0.00022, P = 0.00022
Identities = 17/42 (40%), Positives = 23/42 (54%)
Query: 78 IICYNCNSSGHFARNCPNDSSKRCYACHQAGHMAKECPGQTA 119
I C+NC GH A+NC K C+ C + GH K+C + A
Sbjct: 391 IKCFNCGKEGHIAKNCRAPRKKGCWRCGKEGHQLKDCTERQA 432
>UNIPROTKB|Q77YG1 [details] [associations]
symbol:gag "Gag" species:11676 "Human immunodeficiency
virus 1" [GO:0006754 "ATP biosynthetic process" evidence=IMP]
[GO:0060550 "positive regulation of fructose 1,6-bisphosphate
1-phosphatase activity" evidence=IDA] [GO:0060559 "positive
regulation of calcidiol 1-monooxygenase activity" evidence=IMP]
InterPro:IPR000071 InterPro:IPR000721 InterPro:IPR001878
InterPro:IPR008916 InterPro:IPR008919 InterPro:IPR010999
InterPro:IPR012344 Pfam:PF00098 Pfam:PF00540 Pfam:PF00607
PRINTS:PR00234 PROSITE:PS50158 SMART:SM00343 GO:GO:0030430
GO:GO:0046872 GO:GO:0005198 GO:GO:0008270 GO:GO:0006754
GO:GO:0003723 Gene3D:4.10.60.10 SUPFAM:SSF57756 GO:GO:0042025
GO:GO:0019028 EMBL:AF033819 GO:GO:0019076 Gene3D:1.10.1200.30
Gene3D:1.10.150.90 Gene3D:1.10.375.10 SUPFAM:SSF47353
SUPFAM:SSF47943 SUPFAM:SSF47836 InterPro:IPR014817 Pfam:PF08705
RefSeq:NP_057850.1 GO:GO:0060559 GO:GO:0060550 EMBL:EF553538
PDB:3NTE PDBsum:3NTE ProteinModelPortal:Q77YG1 SMR:Q77YG1
ChEMBL:CHEMBL3556 EvolutionaryTrace:Q77YG1 Uniprot:Q77YG1
Length = 500
Score = 107 (42.7 bits), Expect = 0.00022, P = 0.00022
Identities = 17/40 (42%), Positives = 22/40 (55%)
Query: 80 CYNCNSSGHFARNCPNDSSKRCYACHQAGHMAKECPGQTA 119
C+NC GH ARNC K C+ C + GH K+C + A
Sbjct: 392 CFNCGKEGHTARNCRAPRKKGCWKCGKEGHQMKDCTERQA 431
>UNIPROTKB|P05890 [details] [associations]
symbol:gag "Gag polyprotein" species:11701 "Human
immunodeficiency virus type 1 (RF/HAT ISOLATE)" [GO:0005654
"nucleoplasm" evidence=TAS] [GO:0005829 "cytosol" evidence=TAS]
[GO:0006278 "RNA-dependent DNA replication" evidence=TAS]
[GO:0010008 "endosome membrane" evidence=TAS] [GO:0016032 "viral
reproduction" evidence=TAS] [GO:0019061 "uncoating of virus"
evidence=TAS] [GO:0030260 "entry into host cell" evidence=TAS]
[GO:0046788 "egress of virus within host cell" evidence=TAS]
InterPro:IPR000071 InterPro:IPR000721 InterPro:IPR001878
InterPro:IPR008916 InterPro:IPR008919 InterPro:IPR010999
InterPro:IPR012344 Pfam:PF00098 Pfam:PF00540 Pfam:PF00607
PRINTS:PR00234 PROSITE:PS50158 SMART:SM00343 GO:GO:0005829
Reactome:REACT_116125 GO:GO:0005654 GO:GO:0030430 GO:GO:0046872
GO:GO:0005198 GO:GO:0008270 GO:GO:0003723 GO:GO:0010008
GO:GO:0020002 GO:GO:0006278 Gene3D:4.10.60.10 SUPFAM:SSF57756
GO:GO:0030260 GO:GO:0042025 GO:GO:0019028 EMBL:M17451 GO:GO:0019076
Gene3D:1.10.1200.30 Gene3D:1.10.150.90 Gene3D:1.10.375.10
SUPFAM:SSF47353 SUPFAM:SSF47943 SUPFAM:SSF47836 GO:GO:0046788
GO:GO:0019061 InterPro:IPR014817 Pfam:PF08705
ProteinModelPortal:P05890 SMR:P05890 Uniprot:P05890
Length = 501
Score = 107 (42.7 bits), Expect = 0.00022, P = 0.00022
Identities = 21/70 (30%), Positives = 31/70 (44%)
Query: 57 VTCYNCSGQGHVAKDCTVKSSIICYNCNSSGHFARNCPNDSSKRCYACH-QAGHMAKECP 115
V C+NC GH+AK+C C+ C GH ++C N+ + + H + P
Sbjct: 390 VKCFNCGKVGHIAKNCRAPRKKGCWKCGKEGHQMKDCTNEGRQANFLGKIWPSHKGR--P 447
Query: 116 GQTAGKSPEP 125
G PEP
Sbjct: 448 GNFLQSRPEP 457
>UNIPROTKB|F1S7I8 [details] [associations]
symbol:ZCCHC3 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0008270 "zinc ion binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR001878
Pfam:PF00098 PROSITE:PS50158 SMART:SM00343 GO:GO:0046872
GO:GO:0008270 GO:GO:0003676 Gene3D:4.10.60.10 SUPFAM:SSF57756
OMA:ERPLQDE GeneTree:ENSGT00530000063983 EMBL:CU606854
RefSeq:XP_003134416.1 Ensembl:ENSSSCT00000007891 GeneID:100519451
KEGG:ssc:100519451 Uniprot:F1S7I8
Length = 402
Score = 106 (42.4 bits), Expect = 0.00027, P = 0.00027
Identities = 21/73 (28%), Positives = 32/73 (43%)
Query: 39 CYKCNNYGHFARECATESVTCYNCSGQGHVAKDCTVKSSIICYNCNSSGHFARNCPN--D 96
C+KC + H + C + C+ C +GH++ C + I+C C GH CP
Sbjct: 334 CFKCGSRTHMSGSCTQDR--CFRCGEEGHLSPYC--RKGIVCNLCGKRGHAFAQCPKAVH 389
Query: 97 SSKRCYACHQAGH 109
+S AGH
Sbjct: 390 NSVAAQLTGVAGH 402
>UNIPROTKB|Q9NUD5 [details] [associations]
symbol:ZCCHC3 "Zinc finger CCHC domain-containing protein
3" species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR001878 Pfam:PF00098 PROSITE:PS50158 SMART:SM00343
GO:GO:0046872 GO:GO:0008270 GO:GO:0003676 Gene3D:4.10.60.10
SUPFAM:SSF57756 EMBL:AL034548 EMBL:BC069238 IPI:IPI00011550
RefSeq:NP_149080.2 UniGene:Hs.28608 UniGene:Hs.603608
ProteinModelPortal:Q9NUD5 SMR:Q9NUD5 IntAct:Q9NUD5
PhosphoSite:Q9NUD5 DMDM:23396534 PaxDb:Q9NUD5 PRIDE:Q9NUD5
Ensembl:ENST00000382352 GeneID:85364 KEGG:hsa:85364 UCSC:uc002wdf.3
CTD:85364 GeneCards:GC20P000278 H-InvDB:HIX0015550
H-InvDB:HIX0138064 HGNC:HGNC:16230 HPA:HPA042972 neXtProt:NX_Q9NUD5
PharmGKB:PA25806 eggNOG:NOG263295 HOGENOM:HOG000115679
HOVERGEN:HBG068441 InParanoid:Q9NUD5 OMA:ERPLQDE OrthoDB:EOG461443
PhylomeDB:Q9NUD5 GenomeRNAi:85364 NextBio:75891 Bgee:Q9NUD5
CleanEx:HS_ZCCHC3 Genevestigator:Q9NUD5 GermOnline:ENSG00000177764
Uniprot:Q9NUD5
Length = 404
Score = 106 (42.4 bits), Expect = 0.00027, P = 0.00027
Identities = 21/73 (28%), Positives = 32/73 (43%)
Query: 39 CYKCNNYGHFARECATESVTCYNCSGQGHVAKDCTVKSSIICYNCNSSGHFARNCPN--D 96
C+KC + H + C + C+ C +GH++ C + I+C C GH CP
Sbjct: 336 CFKCGSRTHMSGSCTQDR--CFRCGEEGHLSPYC--RKGIVCNLCGKRGHAFAQCPKAVH 391
Query: 97 SSKRCYACHQAGH 109
+S AGH
Sbjct: 392 NSVAAQLTGVAGH 404
>TAIR|locus:2047092 [details] [associations]
symbol:GRP2B "glycine-rich protein 2B" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA;ISS] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0009409 "response
to cold" evidence=IEP] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005829 "cytosol" evidence=IDA] [GO:0009790 "embryo
development" evidence=IMP] [GO:0010154 "fruit development"
evidence=IMP] InterPro:IPR001878 InterPro:IPR002059
InterPro:IPR011129 Pfam:PF00098 Pfam:PF00313 PRINTS:PR00050
PROSITE:PS50158 SMART:SM00343 SMART:SM00357 Prosite:PS00352
GO:GO:0005829 GO:GO:0005634 EMBL:CP002685 GenomeReviews:CT485783_GR
GO:GO:0005730 GO:GO:0006355 GO:GO:0046872 GO:GO:0003677
GO:GO:0009409 GO:GO:0008270 GO:GO:0003723 GO:GO:0009790
GO:GO:0010154 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
Gene3D:4.10.60.10 SUPFAM:SSF57756 HOGENOM:HOG000186262
InterPro:IPR019844 EMBL:AC006264 eggNOG:COG1278
ProtClustDB:CLSN2683565 EMBL:U39072 EMBL:AY057693 EMBL:BT021142
IPI:IPI00516457 PIR:F84596 RefSeq:NP_179702.1 UniGene:At.1680
ProteinModelPortal:Q38896 SMR:Q38896 PaxDb:Q38896 PRIDE:Q38896
EnsemblPlants:AT2G21060.1 GeneID:816641 KEGG:ath:AT2G21060
TAIR:At2g21060 InParanoid:Q38896 OMA:CFKCGEP PhylomeDB:Q38896
Genevestigator:Q38896 GermOnline:AT2G21060 Uniprot:Q38896
Length = 201
Score = 102 (41.0 bits), Expect = 0.00028, P = 0.00028
Identities = 21/64 (32%), Positives = 29/64 (45%)
Query: 39 CYKCNNYGHFARECATESVTCYNCSGQGHVAKDCTVKSS---IICYNCNSSGHFARNCPN 95
C+KC GH AREC+ G G + CY+C SGHFAR+C +
Sbjct: 138 CFKCGEPGHMARECSQGGGGYSGGGGGGRYGSGGGGGGGGGGLSCYSCGESGHFARDCTS 197
Query: 96 DSSK 99
++
Sbjct: 198 GGAR 201
>UNIPROTKB|P20892 [details] [associations]
symbol:gag-pol "Gag-Pol polyprotein" species:11699 "Human
immunodeficiency virus type 1 (OYI ISOLATE)" [GO:0005654
"nucleoplasm" evidence=TAS] [GO:0005829 "cytosol" evidence=TAS]
[GO:0006278 "RNA-dependent DNA replication" evidence=TAS]
[GO:0016032 "viral reproduction" evidence=TAS] [GO:0019061
"uncoating of virus" evidence=TAS] [GO:0030260 "entry into host
cell" evidence=TAS] InterPro:IPR000071 InterPro:IPR000477
InterPro:IPR000721 InterPro:IPR001037 InterPro:IPR001584
InterPro:IPR001878 InterPro:IPR001969 InterPro:IPR001995
InterPro:IPR002156 InterPro:IPR003308 InterPro:IPR008916
InterPro:IPR008919 InterPro:IPR010659 InterPro:IPR010661
InterPro:IPR010999 InterPro:IPR012337 InterPro:IPR012344
Pfam:PF00075 Pfam:PF00078 Pfam:PF00098 Pfam:PF00540 Pfam:PF00552
Pfam:PF00607 Pfam:PF00665 Pfam:PF02022 Pfam:PF06815 Pfam:PF06817
PRINTS:PR00234 PROSITE:PS00141 PROSITE:PS50158 PROSITE:PS50175
PROSITE:PS50876 PROSITE:PS50878 PROSITE:PS50879 PROSITE:PS50994
PROSITE:PS51027 SMART:SM00343 GO:GO:0005829 Reactome:REACT_116125
GO:GO:0005654 GO:GO:0030430 GO:GO:0016020 GO:GO:0046872
GO:GO:0003677 GO:GO:0005198 GO:GO:0008270 GO:GO:0006508
GO:GO:0003723 GO:GO:0046718 GO:GO:0020002 GO:GO:0006310
GO:GO:0090305 SUPFAM:SSF53098 GO:GO:0003964 GO:GO:0006278
Gene3D:4.10.60.10 SUPFAM:SSF57756 GO:GO:0030260 GO:GO:0004190
Gene3D:2.40.70.10 InterPro:IPR021109 SUPFAM:SSF50630 GO:GO:0004523
GO:GO:0015074 GO:GO:0075713 GO:GO:0042025 GO:GO:0003887
GO:GO:0019028 EMBL:M26727 Gene3D:1.10.1200.30 Gene3D:1.10.150.90
Gene3D:1.10.375.10 SUPFAM:SSF47353 SUPFAM:SSF47943 SUPFAM:SSF47836
GO:GO:0019061 GO:GO:0075732 Gene3D:1.10.10.200 InterPro:IPR017856
SUPFAM:SSF50122 SUPFAM:SSF46919 InterPro:IPR018061 Pfam:PF00077
GO:GO:0004533 GO:GO:0039651 GO:GO:0046797 Gene3D:2.30.30.10
ProteinModelPortal:P20892 SMR:P20892 Uniprot:P20892
Length = 1434
Score = 109 (43.4 bits), Expect = 0.00032, P = 0.00032
Identities = 16/45 (35%), Positives = 25/45 (55%)
Query: 75 KSSIICYNCNSSGHFARNCPNDSSKRCYACHQAGHMAKECPGQTA 119
+ ++ C+NC GH A+NC K C+ C + GH K+C + A
Sbjct: 386 RKTVKCFNCGKEGHIAKNCRAPRKKGCWKCGREGHQMKDCTERQA 430
>UNIPROTKB|P12497 [details] [associations]
symbol:gag-pol "Gag-Pol polyprotein" species:11698 "Human
immunodeficiency virus type 1 (NEW YORK-5 ISOLATE)" [GO:0005654
"nucleoplasm" evidence=TAS] [GO:0005829 "cytosol" evidence=TAS]
[GO:0006278 "RNA-dependent DNA replication" evidence=TAS]
[GO:0016032 "viral reproduction" evidence=TAS] [GO:0019061
"uncoating of virus" evidence=TAS] [GO:0030260 "entry into host
cell" evidence=TAS] [GO:0042802 "identical protein binding"
evidence=IPI] InterPro:IPR000071 InterPro:IPR000477
InterPro:IPR000721 InterPro:IPR001037 InterPro:IPR001584
InterPro:IPR001878 InterPro:IPR001969 InterPro:IPR001995
InterPro:IPR002156 InterPro:IPR003308 InterPro:IPR008916
InterPro:IPR008919 InterPro:IPR010659 InterPro:IPR010661
InterPro:IPR010999 InterPro:IPR012337 InterPro:IPR012344
Pfam:PF00075 Pfam:PF00078 Pfam:PF00098 Pfam:PF00540 Pfam:PF00552
Pfam:PF00607 Pfam:PF00665 Pfam:PF02022 Pfam:PF06815 Pfam:PF06817
PRINTS:PR00234 PROSITE:PS00141 PROSITE:PS50158 PROSITE:PS50175
PROSITE:PS50876 PROSITE:PS50878 PROSITE:PS50879 PROSITE:PS50994
PROSITE:PS51027 SMART:SM00343 GO:GO:0005829 Reactome:REACT_116125
GO:GO:0005654 GO:GO:0030430 GO:GO:0016020 GO:GO:0046872
GO:GO:0003677 GO:GO:0005198 GO:GO:0008270 GO:GO:0006508
GO:GO:0003723 GO:GO:0046718 GO:GO:0020002 GO:GO:0006310
GO:GO:0090305 SUPFAM:SSF53098 GO:GO:0003964 GO:GO:0006278
Gene3D:4.10.60.10 SUPFAM:SSF57756 GO:GO:0030260 GO:GO:0004190
Gene3D:2.40.70.10 InterPro:IPR021109 SUPFAM:SSF50630 GO:GO:0004523
GO:GO:0015074 GO:GO:0075713 GO:GO:0042025 GO:GO:0003887
GO:GO:0019028 EMBL:M19921 Gene3D:1.10.1200.30 Gene3D:1.10.150.90
Gene3D:1.10.375.10 SUPFAM:SSF47353 SUPFAM:SSF47943 SUPFAM:SSF47836
GO:GO:0019061 GO:GO:0075732 Gene3D:1.10.10.200 InterPro:IPR017856
SUPFAM:SSF50122 SUPFAM:SSF46919 InterPro:IPR018061 Pfam:PF00077
GO:GO:0004533 GO:GO:0039651 GO:GO:0046797 Gene3D:2.30.30.10
PDB:1A43 PDB:1A8O PDB:1AFV PDB:1AK4 PDB:1AUM PDB:1B92 PDB:1B9D
PDB:1B9F PDB:1BAJ PDB:1BHL PDB:1BI4 PDB:1BIS PDB:1BIU PDB:1BIZ
PDB:1BL3 PDB:1GWP PDB:1HIW PDB:1HYV PDB:1HYZ PDB:1ITG PDB:1K6Y
PDB:1M9D PDB:1QS4 PDB:1UPH PDB:1WJB PDB:1WJD PDB:1WKN PDB:1ZA9
PDB:2B4J PDB:2GOL PDB:2GON PDB:2H3F PDB:2H3I PDB:2H3Q PDB:2H3V
PDB:2H3Z PDB:2HMX PDB:2HVP PDB:2ITG PDB:2JPR PDB:2JYG PDB:2JYL
PDB:2LF4 PDB:2ONT PDB:2PWM PDB:2PWO PDB:2PXR PDB:2X2D PDB:2XDE
PDB:2XV6 PDB:2XXM PDB:3AV9 PDB:3AVA PDB:3AVB PDB:3AVC PDB:3AVF
PDB:3AVG PDB:3AVH PDB:3AVJ PDB:3AVK PDB:3AVL PDB:3AVM PDB:3AVN
PDB:3DIK PDB:3DPH PDB:3DS0 PDB:3DS1 PDB:3DS2 PDB:3DS3 PDB:3DS4
PDB:3DS5 PDB:3DTJ PDB:3GV2 PDB:3H47 PDB:3H4E PDB:3L3U PDB:3L3V
PDB:3LPT PDB:3LPU PDB:3LRY PDB:3MGE PDB:3NF6 PDB:3NF7 PDB:3NF8
PDB:3NF9 PDB:3NFA PDB:3P05 PDB:3P0A PDB:3S85 PDB:4AH9 PDB:4AHR
PDB:4AHS PDB:4AHT PDB:4AHU PDB:4AHV PDB:4DGA PDB:4DGE PDB:4DMN
PDB:4E1M PDB:4E1N PDB:4E91 PDB:4E92 PDB:4PHV PDB:5HVP PDB:9HVP
PDBsum:1A43 PDBsum:1A8O PDBsum:1AFV PDBsum:1AK4 PDBsum:1AUM
PDBsum:1B92 PDBsum:1B9D PDBsum:1B9F PDBsum:1BAJ PDBsum:1BHL
PDBsum:1BI4 PDBsum:1BIS PDBsum:1BIU PDBsum:1BIZ PDBsum:1BL3
PDBsum:1GWP PDBsum:1HIW PDBsum:1HYV PDBsum:1HYZ PDBsum:1ITG
PDBsum:1K6Y PDBsum:1M9D PDBsum:1QS4 PDBsum:1UPH PDBsum:1WJB
PDBsum:1WJD PDBsum:1WKN PDBsum:1ZA9 PDBsum:2B4J PDBsum:2GOL
PDBsum:2GON PDBsum:2H3F PDBsum:2H3I PDBsum:2H3Q PDBsum:2H3V
PDBsum:2H3Z PDBsum:2HMX PDBsum:2HVP PDBsum:2ITG PDBsum:2JPR
PDBsum:2JYG PDBsum:2JYL PDBsum:2LF4 PDBsum:2ONT PDBsum:2PWM
PDBsum:2PWO PDBsum:2PXR PDBsum:2X2D PDBsum:2XDE PDBsum:2XV6
PDBsum:2XXM PDBsum:3AV9 PDBsum:3AVA PDBsum:3AVB PDBsum:3AVC
PDBsum:3AVF PDBsum:3AVG PDBsum:3AVH PDBsum:3AVJ PDBsum:3AVK
PDBsum:3AVL PDBsum:3AVM PDBsum:3AVN PDBsum:3DIK PDBsum:3DPH
PDBsum:3DS0 PDBsum:3DS1 PDBsum:3DS2 PDBsum:3DS3 PDBsum:3DS4
PDBsum:3DS5 PDBsum:3DTJ PDBsum:3GV2 PDBsum:3H47 PDBsum:3H4E
PDBsum:3L3U PDBsum:3L3V PDBsum:3LPT PDBsum:3LPU PDBsum:3LRY
PDBsum:3MGE PDBsum:3NF6 PDBsum:3NF7 PDBsum:3NF8 PDBsum:3NF9
PDBsum:3NFA PDBsum:3P05 PDBsum:3P0A PDBsum:3S85 PDBsum:4AH9
PDBsum:4AHR PDBsum:4AHS PDBsum:4AHT PDBsum:4AHU PDBsum:4AHV
PDBsum:4DGA PDBsum:4DGE PDBsum:4DMN PDBsum:4E1M PDBsum:4E1N
PDBsum:4E91 PDBsum:4E92 PDBsum:4PHV PDBsum:5HVP PDBsum:9HVP
IntAct:P12497 EvolutionaryTrace:P12497 Uniprot:P12497
Length = 1435
Score = 109 (43.4 bits), Expect = 0.00032, P = 0.00032
Identities = 16/45 (35%), Positives = 25/45 (55%)
Query: 75 KSSIICYNCNSSGHFARNCPNDSSKRCYACHQAGHMAKECPGQTA 119
+ ++ C+NC GH A+NC K C+ C + GH K+C + A
Sbjct: 387 RKTVKCFNCGKEGHIAKNCRAPRKKGCWKCGKEGHQMKDCTERQA 431
>UNIPROTKB|P35963 [details] [associations]
symbol:gag-pol "Gag-Pol polyprotein" species:362651 "Human
immunodeficiency virus type 1 (isolate YU2)" [GO:0005654
"nucleoplasm" evidence=TAS] [GO:0005829 "cytosol" evidence=TAS]
[GO:0006278 "RNA-dependent DNA replication" evidence=TAS]
[GO:0016032 "viral reproduction" evidence=TAS] [GO:0019061
"uncoating of virus" evidence=TAS] [GO:0030260 "entry into host
cell" evidence=TAS] InterPro:IPR000071 InterPro:IPR000477
InterPro:IPR000721 InterPro:IPR001037 InterPro:IPR001584
InterPro:IPR001878 InterPro:IPR001969 InterPro:IPR001995
InterPro:IPR002156 InterPro:IPR003308 InterPro:IPR008916
InterPro:IPR008919 InterPro:IPR010659 InterPro:IPR010661
InterPro:IPR010999 InterPro:IPR012337 InterPro:IPR012344
Pfam:PF00075 Pfam:PF00078 Pfam:PF00098 Pfam:PF00540 Pfam:PF00552
Pfam:PF00607 Pfam:PF00665 Pfam:PF02022 Pfam:PF06815 Pfam:PF06817
PRINTS:PR00234 PROSITE:PS00141 PROSITE:PS50158 PROSITE:PS50175
PROSITE:PS50876 PROSITE:PS50878 PROSITE:PS50879 PROSITE:PS50994
PROSITE:PS51027 SMART:SM00343 GO:GO:0005829 Reactome:REACT_116125
GO:GO:0005654 GO:GO:0030430 GO:GO:0016020 GO:GO:0046872
GO:GO:0003677 GO:GO:0005198 GO:GO:0008270 GO:GO:0006508
GO:GO:0003723 GO:GO:0046718 GO:GO:0020002 GO:GO:0006310
GO:GO:0090305 SUPFAM:SSF53098 GO:GO:0003964 GO:GO:0006278
Gene3D:4.10.60.10 SUPFAM:SSF57756 GO:GO:0030260 GO:GO:0004190
Gene3D:2.40.70.10 InterPro:IPR021109 SUPFAM:SSF50630 GO:GO:0004523
GO:GO:0015074 GO:GO:0075713 GO:GO:0042025 GO:GO:0003887
GO:GO:0019028 EMBL:M93258 Gene3D:1.10.1200.30 Gene3D:1.10.150.90
Gene3D:1.10.375.10 SUPFAM:SSF47353 SUPFAM:SSF47943 SUPFAM:SSF47836
GO:GO:0019061 PDB:1F6U PDB:1MFS PDBsum:1F6U PDBsum:1MFS
GO:GO:0075732 Gene3D:1.10.10.200 InterPro:IPR017856 SUPFAM:SSF50122
SUPFAM:SSF46919 InterPro:IPR018061 Pfam:PF00077 GO:GO:0004533
GO:GO:0039651 GO:GO:0046797 Gene3D:2.30.30.10 PDB:3U7S PDBsum:3U7S
PIR:B44001 PDB:1K6C PDB:1K6P PDB:1K6T PDB:1K6V PDB:1T7I PDB:1T7J
PDB:1WJA PDB:1WJC PDB:2JO0 PDB:2L6E PDB:3OQ7 PDB:3OQA PDB:3OQD
PDB:3OTS PDB:3OTY PDB:3OU1 PDB:3OU3 PDB:3OU4 PDB:3OUA PDB:3OUB
PDB:3OUC PDB:3OUD PDB:3PJ6 PDB:4A6B PDB:4A6C PDBsum:1K6C
PDBsum:1K6P PDBsum:1K6T PDBsum:1K6V PDBsum:1T7I PDBsum:1T7J
PDBsum:1WJA PDBsum:1WJC PDBsum:2JO0 PDBsum:2L6E PDBsum:3OQ7
PDBsum:3OQA PDBsum:3OQD PDBsum:3OTS PDBsum:3OTY PDBsum:3OU1
PDBsum:3OU3 PDBsum:3OU4 PDBsum:3OUA PDBsum:3OUB PDBsum:3OUC
PDBsum:3OUD PDBsum:3PJ6 PDBsum:4A6B PDBsum:4A6C
ProteinModelPortal:P35963 SMR:P35963 DIP:DIP-45385N IntAct:P35963
EvolutionaryTrace:P35963 Uniprot:P35963
Length = 1435
Score = 109 (43.4 bits), Expect = 0.00032, P = 0.00032
Identities = 16/45 (35%), Positives = 25/45 (55%)
Query: 75 KSSIICYNCNSSGHFARNCPNDSSKRCYACHQAGHMAKECPGQTA 119
+ ++ C+NC GH A+NC K C+ C + GH K+C + A
Sbjct: 387 RKTVKCFNCGKEGHIAKNCRAPRKKGCWKCGKEGHQMKDCTERQA 431
>UNIPROTKB|P12499 [details] [associations]
symbol:gag-pol "Gag-Pol polyprotein" species:11683 "Human
immunodeficiency virus type 1 (Z2/CDC-Z34 ISOLATE)" [GO:0005654
"nucleoplasm" evidence=TAS] [GO:0005829 "cytosol" evidence=TAS]
[GO:0006278 "RNA-dependent DNA replication" evidence=TAS]
[GO:0016032 "viral reproduction" evidence=TAS] [GO:0019061
"uncoating of virus" evidence=TAS] [GO:0030260 "entry into host
cell" evidence=TAS] InterPro:IPR000071 InterPro:IPR000477
InterPro:IPR000721 InterPro:IPR001037 InterPro:IPR001584
InterPro:IPR001878 InterPro:IPR001969 InterPro:IPR001995
InterPro:IPR002156 InterPro:IPR003308 InterPro:IPR008916
InterPro:IPR008919 InterPro:IPR010659 InterPro:IPR010661
InterPro:IPR010999 InterPro:IPR012337 InterPro:IPR012344
Pfam:PF00075 Pfam:PF00078 Pfam:PF00098 Pfam:PF00540 Pfam:PF00552
Pfam:PF00607 Pfam:PF00665 Pfam:PF02022 Pfam:PF06815 Pfam:PF06817
PRINTS:PR00234 PROSITE:PS00141 PROSITE:PS50158 PROSITE:PS50175
PROSITE:PS50876 PROSITE:PS50878 PROSITE:PS50879 PROSITE:PS50994
PROSITE:PS51027 SMART:SM00343 GO:GO:0005829 Reactome:REACT_116125
GO:GO:0005654 GO:GO:0030430 PDB:1Q94 PDBsum:1Q94 PDB:1E28
PDBsum:1E28 GO:GO:0016020 GO:GO:0046872 GO:GO:0003677 GO:GO:0005198
GO:GO:0008270 GO:GO:0006508 GO:GO:0003723 GO:GO:0046718
GO:GO:0020002 GO:GO:0006310 GO:GO:0090305 SUPFAM:SSF53098
GO:GO:0003964 GO:GO:0006278 Gene3D:4.10.60.10 SUPFAM:SSF57756
GO:GO:0030260 GO:GO:0004190 Gene3D:2.40.70.10 InterPro:IPR021109
SUPFAM:SSF50630 GO:GO:0004523 GO:GO:0015074 GO:GO:0075713
GO:GO:0042025 GO:GO:0003887 GO:GO:0019028 EMBL:M22639
Gene3D:1.10.1200.30 Gene3D:1.10.150.90 Gene3D:1.10.375.10
SUPFAM:SSF47353 SUPFAM:SSF47943 SUPFAM:SSF47836 GO:GO:0019061
GO:GO:0075732 Gene3D:1.10.10.200 InterPro:IPR017856 SUPFAM:SSF50122
SUPFAM:SSF46919 InterPro:IPR018061 Pfam:PF00077 GO:GO:0004533
GO:GO:0039651 GO:GO:0046797 Gene3D:2.30.30.10 PIR:S54378 PDB:1HXW
PDB:1PRO PDB:1VIJ PDB:1VIK PDB:2WKZ PDB:2WL0 PDB:2XYE PDB:2XYF
PDB:3KF0 PDB:3KFN PDB:3KFP PDB:3KFR PDB:3KFS PDB:4DQB PDB:4DQC
PDB:4DQE PDB:4DQF PDB:4DQG PDB:4DQH PDB:4E43 PDBsum:1HXW
PDBsum:1PRO PDBsum:1VIJ PDBsum:1VIK PDBsum:2WKZ PDBsum:2WL0
PDBsum:2XYE PDBsum:2XYF PDBsum:3KF0 PDBsum:3KFN PDBsum:3KFP
PDBsum:3KFR PDBsum:3KFS PDBsum:4DQB PDBsum:4DQC PDBsum:4DQE
PDBsum:4DQF PDBsum:4DQG PDBsum:4DQH PDBsum:4E43
ProteinModelPortal:P12499 SMR:P12499 EvolutionaryTrace:P12499
Uniprot:P12499
Length = 1436
Score = 109 (43.4 bits), Expect = 0.00032, P = 0.00032
Identities = 17/45 (37%), Positives = 25/45 (55%)
Query: 75 KSSIICYNCNSSGHFARNCPNDSSKRCYACHQAGHMAKECPGQTA 119
+ +I C+NC GH A+NC K C+ C + GH K+C + A
Sbjct: 389 RKTIKCFNCGKEGHIAKNCRAPRRKGCWKCGKEGHQLKDCTERQA 433
>UNIPROTKB|P03369 [details] [associations]
symbol:gag-pol "Gag-Pol polyprotein" species:11685 "HIV-1
M:B_ARV2/SF2" [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0005829
"cytosol" evidence=TAS] [GO:0006278 "RNA-dependent DNA replication"
evidence=TAS] [GO:0016032 "viral reproduction" evidence=TAS]
[GO:0019061 "uncoating of virus" evidence=TAS] [GO:0030260 "entry
into host cell" evidence=TAS] InterPro:IPR000071 InterPro:IPR000477
InterPro:IPR000721 InterPro:IPR001037 InterPro:IPR001584
InterPro:IPR001878 InterPro:IPR001969 InterPro:IPR001995
InterPro:IPR002156 InterPro:IPR003308 InterPro:IPR008916
InterPro:IPR008919 InterPro:IPR010659 InterPro:IPR010661
InterPro:IPR010999 InterPro:IPR012337 InterPro:IPR012344
Pfam:PF00075 Pfam:PF00078 Pfam:PF00098 Pfam:PF00540 Pfam:PF00552
Pfam:PF00607 Pfam:PF00665 Pfam:PF02022 Pfam:PF06815 Pfam:PF06817
PRINTS:PR00234 PROSITE:PS00141 PROSITE:PS50158 PROSITE:PS50175
PROSITE:PS50876 PROSITE:PS50878 PROSITE:PS50879 PROSITE:PS50994
PROSITE:PS51027 SMART:SM00343 GO:GO:0005829 Reactome:REACT_116125
GO:GO:0005654 GO:GO:0030430 GO:GO:0016020 GO:GO:0046872
GO:GO:0003677 GO:GO:0005198 GO:GO:0008270 GO:GO:0006508
GO:GO:0003723 GO:GO:0046718 GO:GO:0020002 GO:GO:0006310
GO:GO:0090305 DrugBank:DB01048 SUPFAM:SSF53098 GO:GO:0003964
GO:GO:0006278 Gene3D:4.10.60.10 SUPFAM:SSF57756 GO:GO:0030260
GO:GO:0004190 Gene3D:2.40.70.10 InterPro:IPR021109 SUPFAM:SSF50630
GO:GO:0004523 GO:GO:0015074 GO:GO:0075713 GO:GO:0042025
GO:GO:0003887 DrugBank:DB00625 DrugBank:DB00238 DrugBank:DB00705
DrugBank:DB00943 GO:GO:0019028 EMBL:K02007 Gene3D:1.10.1200.30
Gene3D:1.10.150.90 Gene3D:1.10.375.10 SUPFAM:SSF47353
SUPFAM:SSF47943 SUPFAM:SSF47836 GO:GO:0019061 PDB:1TSQ PDB:1TSU
PDBsum:1TSQ PDBsum:1TSU GO:GO:0075732 Gene3D:1.10.10.200
InterPro:IPR017856 SUPFAM:SSF50122 SUPFAM:SSF46919
InterPro:IPR018061 Pfam:PF00077 PIR:A03968 PDB:1AID PDB:1B6J
PDB:1B6K PDB:1B6L PDB:1B6M PDB:1B6P PDB:1CPI PDB:1D4K PDB:1D4L
PDB:1F7A PDB:1KJ4 PDB:1KJ7 PDB:1KJF PDB:1KJG PDB:1KJH PDB:1KZK
PDB:1MT7 PDB:1MT8 PDB:1MT9 PDB:1MTB PDB:1MTR PDB:1N49 PDB:1T3R
PDB:1YTG PDB:1YTH PDB:1Z1H PDB:1Z1R PDB:2AID PDB:2F3K PDB:2FGU
PDB:2FGV PDB:2FNS PDB:2FNT PDB:2J9J PDB:2J9K PDB:2JE4 PDB:2NXD
PDB:2NXL PDB:2NXM PDB:2Q3K PDB:2QHY PDB:2QHZ PDB:2QI0 PDB:2QI1
PDB:2QI3 PDB:2QI4 PDB:2QI5 PDB:2QI6 PDB:2QI7 PDB:3AID PDB:3BXR
PDB:3BXS PDB:3EKP PDB:3EKQ PDB:3EKT PDB:3EKV PDB:3EKW PDB:3EKX
PDB:3EKY PDB:3EL0 PDB:3EL1 PDB:3EL4 PDB:3EL5 PDB:3EL9 PDB:3EM3
PDB:3EM4 PDB:3EM6 PDB:3GI0 PDB:3GI4 PDB:3GI5 PDB:3GI6 PDB:3HAU
PDB:3HAW PDB:3HVP PDB:3HZC PDB:3I2L PDB:3I7E PDB:3IAW PDB:3KA2
PDB:3LZV PDB:3MXD PDB:3MXE PDB:3O9F PDB:3O9G PDB:3O9H PDB:3O9I
PDB:3OXV PDB:3OXW PDB:3OXX PDB:3OY4 PDB:3R4B PDB:4EP2 PDB:4EP3
PDB:4EPJ PDB:4EQ0 PDB:4EQJ PDB:4HVP PDB:7HVP PDB:8HVP PDBsum:1AID
PDBsum:1B6J PDBsum:1B6K PDBsum:1B6L PDBsum:1B6M PDBsum:1B6P
PDBsum:1CPI PDBsum:1D4K PDBsum:1D4L PDBsum:1F7A PDBsum:1KJ4
PDBsum:1KJ7 PDBsum:1KJF PDBsum:1KJG PDBsum:1KJH PDBsum:1KZK
PDBsum:1MT7 PDBsum:1MT8 PDBsum:1MT9 PDBsum:1MTB PDBsum:1MTR
PDBsum:1N49 PDBsum:1T3R PDBsum:1YTG PDBsum:1YTH PDBsum:1Z1H
PDBsum:1Z1R PDBsum:2AID PDBsum:2F3K PDBsum:2FGU PDBsum:2FGV
PDBsum:2FNS PDBsum:2FNT PDBsum:2J9J PDBsum:2J9K PDBsum:2JE4
PDBsum:2NXD PDBsum:2NXL PDBsum:2NXM PDBsum:2Q3K PDBsum:2QHY
PDBsum:2QHZ PDBsum:2QI0 PDBsum:2QI1 PDBsum:2QI3 PDBsum:2QI4
PDBsum:2QI5 PDBsum:2QI6 PDBsum:2QI7 PDBsum:3AID PDBsum:3BXR
PDBsum:3BXS PDBsum:3EKP PDBsum:3EKQ PDBsum:3EKT PDBsum:3EKV
PDBsum:3EKW PDBsum:3EKX PDBsum:3EKY PDBsum:3EL0 PDBsum:3EL1
PDBsum:3EL4 PDBsum:3EL5 PDBsum:3EL9 PDBsum:3EM3 PDBsum:3EM4
PDBsum:3EM6 PDBsum:3GI0 PDBsum:3GI4 PDBsum:3GI5 PDBsum:3GI6
PDBsum:3HAU PDBsum:3HAW PDBsum:3HVP PDBsum:3HZC PDBsum:3I2L
PDBsum:3I7E PDBsum:3IAW PDBsum:3KA2 PDBsum:3LZV PDBsum:3MXD
PDBsum:3MXE PDBsum:3O9F PDBsum:3O9G PDBsum:3O9H PDBsum:3O9I
PDBsum:3OXV PDBsum:3OXW PDBsum:3OXX PDBsum:3OY4 PDBsum:3R4B
PDBsum:4EP2 PDBsum:4EP3 PDBsum:4EPJ PDBsum:4EQ0 PDBsum:4EQJ
PDBsum:4HVP PDBsum:7HVP PDBsum:8HVP ProteinModelPortal:P03369
SMR:P03369 BRENDA:3.4.23.16 DrugBank:DB00900 DrugBank:DB00879
DrugBank:DB00709 DrugBank:DB00649 DrugBank:DB00300 DrugBank:DB00495
EvolutionaryTrace:P03369 GO:GO:0004533 GO:GO:0039651 GO:GO:0046797
Gene3D:2.30.30.10 Uniprot:P03369
Length = 1437
Score = 109 (43.4 bits), Expect = 0.00032, P = 0.00032
Identities = 16/45 (35%), Positives = 25/45 (55%)
Query: 75 KSSIICYNCNSSGHFARNCPNDSSKRCYACHQAGHMAKECPGQTA 119
+ ++ C+NC GH A+NC K C+ C + GH K+C + A
Sbjct: 389 RKTVKCFNCGKEGHIAKNCRAPRKKGCWRCGREGHQMKDCTERQA 433
>UNIPROTKB|P03367 [details] [associations]
symbol:gag-pol "Gag-Pol polyprotein" species:11686 "Human
immunodeficiency virus type 1 (BRU ISOLATE)" [GO:0005654
"nucleoplasm" evidence=TAS] [GO:0005829 "cytosol" evidence=TAS]
[GO:0006278 "RNA-dependent DNA replication" evidence=TAS]
[GO:0016032 "viral reproduction" evidence=TAS] [GO:0019061
"uncoating of virus" evidence=TAS] [GO:0030260 "entry into host
cell" evidence=TAS] InterPro:IPR000071 InterPro:IPR000477
InterPro:IPR000721 InterPro:IPR001037 InterPro:IPR001584
InterPro:IPR001878 InterPro:IPR001969 InterPro:IPR001995
InterPro:IPR002156 InterPro:IPR003308 InterPro:IPR008916
InterPro:IPR008919 InterPro:IPR010659 InterPro:IPR010661
InterPro:IPR010999 InterPro:IPR012337 InterPro:IPR012344
Pfam:PF00075 Pfam:PF00078 Pfam:PF00098 Pfam:PF00540 Pfam:PF00552
Pfam:PF00607 Pfam:PF00665 Pfam:PF02022 Pfam:PF06815 Pfam:PF06817
PRINTS:PR00234 PROSITE:PS00141 PROSITE:PS50158 PROSITE:PS50175
PROSITE:PS50876 PROSITE:PS50878 PROSITE:PS50879 PROSITE:PS50994
PROSITE:PS51027 SMART:SM00343 GO:GO:0005829 Reactome:REACT_116125
GO:GO:0005654 GO:GO:0030430 GO:GO:0016020 GO:GO:0046872
GO:GO:0003677 GO:GO:0005198 GO:GO:0008270 GO:GO:0006508
GO:GO:0003723 GO:GO:0046718 GO:GO:0020002 GO:GO:0006310
GO:GO:0090305 SUPFAM:SSF53098 GO:GO:0003964 GO:GO:0006278
Gene3D:4.10.60.10 SUPFAM:SSF57756 GO:GO:0030260 GO:GO:0004190
Gene3D:2.40.70.10 InterPro:IPR021109 SUPFAM:SSF50630 GO:GO:0004523
GO:GO:0015074 GO:GO:0075713 GO:GO:0042025 GO:GO:0003887
GO:GO:0019028 EMBL:K02013 Gene3D:1.10.1200.30 Gene3D:1.10.150.90
Gene3D:1.10.375.10 SUPFAM:SSF47353 SUPFAM:SSF47943 SUPFAM:SSF47836
GO:GO:0019061 GO:GO:0075732 Gene3D:1.10.10.200 InterPro:IPR017856
SUPFAM:SSF50122 SUPFAM:SSF46919 InterPro:IPR018061 Pfam:PF00077
GO:GO:0004533 GO:GO:0039651 GO:GO:0046797 Gene3D:2.30.30.10
PDB:1HNI PDBsum:1HNI PDB:1A8G PDB:1A8K PDB:1A94 PDB:1AAQ PDB:1D4S
PDB:1D4Y PDB:1DAZ PDB:1DIF PDB:1FQX PDB:1HHP PDB:1HPO PDB:1HPX
PDB:1HSG PDB:1HVL PDB:1IIQ PDB:1IZI PDB:1LZQ PDB:1M0B PDB:1MRW
PDB:1MRX PDB:1MSM PDB:1MSN PDB:1NH0 PDB:1RL8 PDB:1SDT PDB:1SDU
PDB:1SDV PDB:1SGU PDB:1SH9 PDB:1SP5 PDB:1U8G PDB:1UPJ PDB:1XL2
PDB:1XL5 PDB:1Z8C PDB:1ZBG PDB:1ZJ7 PDB:1ZLF PDB:1ZPK PDB:1ZTZ
PDB:2A1E PDB:2AZ8 PDB:2AZ9 PDB:2AZB PDB:2AZC PDB:2B7Z PDB:2BB9
PDB:2FDE PDB:2FND PDB:2HB2 PDB:2HB4 PDB:2HC0 PDB:2IEN PDB:2O4K
PDB:2O4L PDB:2O4N PDB:2O4P PDB:2O4S PDB:2P3B PDB:2PK5 PDB:2PK6
PDB:2PQZ PDB:2PWC PDB:2PWR PDB:2PYM PDB:2PYN PDB:2Q63 PDB:2Q64
PDB:2QAK PDB:2QCI PDB:2QD6 PDB:2QD7 PDB:2QD8 PDB:2QHC PDB:2QNN
PDB:2QNP PDB:2QNQ PDB:2R43 PDB:2UPJ PDB:2Z4O PDB:2ZGA PDB:2ZYE
PDB:3A2O PDB:3BHE PDB:3BVA PDB:3BVB PDB:3CKT PDB:3DJK PDB:3DK1
PDB:3FX5 PDB:3GGU PDB:3H5B PDB:3I6O PDB:3I8W PDB:3JVW PDB:3JVY
PDB:3JW2 PDB:3KDB PDB:3KDC PDB:3KDD PDB:3NDU PDB:3NDW PDB:3NDX
PDB:3NLS PDB:3PWM PDB:3PWR PDB:3QBF PDB:3QIH PDB:3QN8 PDB:3QOZ
PDB:3QP0 PDB:3QPJ PDB:3QRM PDB:3QRO PDB:3QRS PDB:3ST5 PDB:3T11
PDB:3T3C PDB:3TOF PDB:3TOG PDB:3TOH PDB:3TTP PDB:3U7S PDB:3UCB
PDB:3UF3 PDB:3UFN PDB:3UHL PDB:3VF5 PDB:3VF7 PDB:3VFB PDB:4DFG
PDB:4FAF PDB:4FE6 PDB:4FL8 PDB:4FLG PDB:4FM6 PDB:7UPJ PDBsum:1A8G
PDBsum:1A8K PDBsum:1A94 PDBsum:1AAQ PDBsum:1D4S PDBsum:1D4Y
PDBsum:1DAZ PDBsum:1DIF PDBsum:1FQX PDBsum:1HHP PDBsum:1HPO
PDBsum:1HPX PDBsum:1HSG PDBsum:1HVL PDBsum:1IIQ PDBsum:1IZI
PDBsum:1LZQ PDBsum:1M0B PDBsum:1MRW PDBsum:1MRX PDBsum:1MSM
PDBsum:1MSN PDBsum:1NH0 PDBsum:1RL8 PDBsum:1SDT PDBsum:1SDU
PDBsum:1SDV PDBsum:1SGU PDBsum:1SH9 PDBsum:1SP5 PDBsum:1U8G
PDBsum:1UPJ PDBsum:1XL2 PDBsum:1XL5 PDBsum:1Z8C PDBsum:1ZBG
PDBsum:1ZJ7 PDBsum:1ZLF PDBsum:1ZPK PDBsum:1ZTZ PDBsum:2A1E
PDBsum:2AZ8 PDBsum:2AZ9 PDBsum:2AZB PDBsum:2AZC PDBsum:2B7Z
PDBsum:2BB9 PDBsum:2FDE PDBsum:2FND PDBsum:2HB2 PDBsum:2HB4
PDBsum:2HC0 PDBsum:2IEN PDBsum:2O4K PDBsum:2O4L PDBsum:2O4N
PDBsum:2O4P PDBsum:2O4S PDBsum:2P3B PDBsum:2PK5 PDBsum:2PK6
PDBsum:2PQZ PDBsum:2PWC PDBsum:2PWR PDBsum:2PYM PDBsum:2PYN
PDBsum:2Q63 PDBsum:2Q64 PDBsum:2QAK PDBsum:2QCI PDBsum:2QD6
PDBsum:2QD7 PDBsum:2QD8 PDBsum:2QHC PDBsum:2QNN PDBsum:2QNP
PDBsum:2QNQ PDBsum:2R43 PDBsum:2UPJ PDBsum:2Z4O PDBsum:2ZGA
PDBsum:2ZYE PDBsum:3A2O PDBsum:3BHE PDBsum:3BVA PDBsum:3BVB
PDBsum:3CKT PDBsum:3DJK PDBsum:3DK1 PDBsum:3FX5 PDBsum:3GGU
PDBsum:3H5B PDBsum:3I6O PDBsum:3I8W PDBsum:3JVW PDBsum:3JVY
PDBsum:3JW2 PDBsum:3KDB PDBsum:3KDC PDBsum:3KDD PDBsum:3NDU
PDBsum:3NDW PDBsum:3NDX PDBsum:3NLS PDBsum:3PWM PDBsum:3PWR
PDBsum:3QBF PDBsum:3QIH PDBsum:3QN8 PDBsum:3QOZ PDBsum:3QP0
PDBsum:3QPJ PDBsum:3QRM PDBsum:3QRO PDBsum:3QRS PDBsum:3ST5
PDBsum:3T11 PDBsum:3T3C PDBsum:3TOF PDBsum:3TOG PDBsum:3TOH
PDBsum:3TTP PDBsum:3U7S PDBsum:3UCB PDBsum:3UF3 PDBsum:3UFN
PDBsum:3UHL PDBsum:3VF5 PDBsum:3VF7 PDBsum:3VFB PDBsum:4DFG
PDBsum:4FAF PDBsum:4FE6 PDBsum:4FL8 PDBsum:4FLG PDBsum:4FM6
PDBsum:7UPJ ProteinModelPortal:P03367 SMR:P03367
EvolutionaryTrace:P03367 Uniprot:P03367
Length = 1447
Score = 109 (43.4 bits), Expect = 0.00032, P = 0.00032
Identities = 17/40 (42%), Positives = 22/40 (55%)
Query: 80 CYNCNSSGHFARNCPNDSSKRCYACHQAGHMAKECPGQTA 119
C+NC GH ARNC K C+ C + GH K+C + A
Sbjct: 392 CFNCGKEGHIARNCRAPRKKGCWKCGKEGHQMKDCTERQA 431
>UNIPROTKB|Q45KJ4 [details] [associations]
symbol:LIN28B "Protein lin-28 homolog B" species:9031
"Gallus gallus" [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0031054 "pre-miRNA
processing" evidence=ISS] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=IEA] [GO:0010587 "miRNA catabolic process" evidence=ISS]
[GO:0031123 "RNA 3'-end processing" evidence=ISS]
InterPro:IPR001878 InterPro:IPR002059 InterPro:IPR011129
Pfam:PF00098 Pfam:PF00313 PRINTS:PR00050 PROSITE:PS50158
SMART:SM00343 SMART:SM00357 GO:GO:0005739 GO:GO:0005634
GO:GO:0006355 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
GO:GO:0003723 GO:GO:0031054 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 HSSP:Q9H9Z2 Gene3D:4.10.60.10 SUPFAM:SSF57756
eggNOG:COG1278 GeneTree:ENSGT00390000001177 HOGENOM:HOG000047091
HOVERGEN:HBG081922 OrthoDB:EOG4640D4 GO:GO:0010587 GO:GO:0031123
EMBL:DQ127227 IPI:IPI00655492 RefSeq:NP_001029990.1
UniGene:Gga.14055 ProteinModelPortal:Q45KJ4 SMR:Q45KJ4
Ensembl:ENSGALT00000024860 GeneID:421786 KEGG:gga:421786 CTD:389421
InParanoid:Q45KJ4 OMA:GGHGCTS NextBio:20824507 Uniprot:Q45KJ4
Length = 250
Score = 103 (41.3 bits), Expect = 0.00036, P = 0.00036
Identities = 21/62 (33%), Positives = 30/62 (48%)
Query: 59 CYNCSGQGHVAKDCTVKSSII-CYNCNSSGHFARNCPNDSSKRCYACHQAGHMAKECPGQ 117
CYNC G H AK+C++ C+ C S H NCP+ + + Q H A+ P
Sbjct: 129 CYNCGGLDHHAKECSLPPQPKKCHYCQSIMHMVANCPHKTVSQQPTSSQGRHEAEPQPST 188
Query: 118 TA 119
+A
Sbjct: 189 SA 190
>UNIPROTKB|F1P7H7 [details] [associations]
symbol:LIN28B "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR001878 InterPro:IPR002059 InterPro:IPR011129
Pfam:PF00098 Pfam:PF00313 PRINTS:PR00050 PROSITE:PS50158
SMART:SM00343 SMART:SM00357 GO:GO:0006355 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 Gene3D:4.10.60.10 SUPFAM:SSF57756
GeneTree:ENSGT00390000001177 CTD:389421 OMA:GGHGCTS
EMBL:AAEX03008576 RefSeq:XP_539064.2 ProteinModelPortal:F1P7H7
Ensembl:ENSCAFT00000005790 GeneID:481943 KEGG:cfa:481943
Uniprot:F1P7H7
Length = 251
Score = 103 (41.3 bits), Expect = 0.00036, P = 0.00036
Identities = 22/62 (35%), Positives = 31/62 (50%)
Query: 59 CYNCSGQGHVAKDCTVKSSII-CYNCNSSGHFARNCPNDSSKRCYACHQAGHMAKECPGQ 117
CYNC G H AK+C++ C+ C S H NCP+ S+ + A Q A+ P
Sbjct: 128 CYNCGGLDHHAKECSLPPQPKKCHYCQSIAHMVANCPHRSAAQPPASSQGRQEAEPQPPC 187
Query: 118 TA 119
T+
Sbjct: 188 TS 189
>UNIPROTKB|A1A4J3 [details] [associations]
symbol:ZCCHC3 "Zinc finger, CCHC domain containing 3"
species:9913 "Bos taurus" [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR001878 Pfam:PF00098 PROSITE:PS50158 SMART:SM00343
GO:GO:0046872 GO:GO:0008270 GO:GO:0003676 Gene3D:4.10.60.10
SUPFAM:SSF57756 CTD:85364 eggNOG:NOG263295 HOGENOM:HOG000115679
HOVERGEN:HBG068441 OMA:ERPLQDE OrthoDB:EOG461443 EMBL:DAAA02036379
EMBL:BC126595 IPI:IPI00716774 RefSeq:NP_001073703.1 UniGene:Bt.923
Ensembl:ENSBTAT00000002733 GeneID:507116 KEGG:bta:507116
GeneTree:ENSGT00530000063983 InParanoid:A1A4J3 NextBio:20867907
Uniprot:A1A4J3
Length = 404
Score = 105 (42.0 bits), Expect = 0.00039, P = 0.00039
Identities = 17/56 (30%), Positives = 27/56 (48%)
Query: 39 CYKCNNYGHFARECATESVTCYNCSGQGHVAKDCTVKSSIICYNCNSSGHFARNCP 94
C+KC + H + C + C+ C +GH++ C + I+C C GH CP
Sbjct: 336 CFKCGSRTHMSGSCTQDR--CFRCGEEGHLSPYC--RKGIVCNLCGKRGHAFAQCP 387
>UNIPROTKB|F1N777 [details] [associations]
symbol:LIN28B "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0031123 "RNA 3'-end processing" evidence=IEA]
[GO:0031054 "pre-miRNA processing" evidence=IEA] [GO:0010587 "miRNA
catabolic process" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR001878 InterPro:IPR002059 Pfam:PF00313 PROSITE:PS50158
SMART:SM00343 GO:GO:0005739 GO:GO:0005634 GO:GO:0006355
GO:GO:0003677 GO:GO:0008270 GO:GO:0003723 GO:GO:0031054
Gene3D:2.40.50.140 InterPro:IPR012340 Gene3D:4.10.60.10
SUPFAM:SSF57756 GeneTree:ENSGT00390000001177 GO:GO:0010587
GO:GO:0031123 EMBL:DAAA02026044 EMBL:DAAA02026045 IPI:IPI00686628
Ensembl:ENSBTAT00000061356 OMA:CTSFQEA Uniprot:F1N777
Length = 181
Score = 100 (40.3 bits), Expect = 0.00040, P = 0.00040
Identities = 17/45 (37%), Positives = 22/45 (48%)
Query: 80 CYNCNSSGHFARNCP-NDSSKRCYACHQAGHMAKECPGQTAGKSP 123
CYNC H A+ C K+C+ C HM CP +TA + P
Sbjct: 64 CYNCGGLDHHAKECSLPPQPKKCHCCQSITHMVANCPHKTAVQPP 108
>UNIPROTKB|P03366 [details] [associations]
symbol:gag-pol "Gag-Pol polyprotein" species:11678 "Human
immunodeficiency virus type 1 BH10" [GO:0005654 "nucleoplasm"
evidence=TAS] [GO:0005829 "cytosol" evidence=TAS] [GO:0006278
"RNA-dependent DNA replication" evidence=TAS] [GO:0016032 "viral
reproduction" evidence=TAS] [GO:0019061 "uncoating of virus"
evidence=TAS] [GO:0030260 "entry into host cell" evidence=TAS]
InterPro:IPR000071 InterPro:IPR000477 InterPro:IPR000721
InterPro:IPR001037 InterPro:IPR001584 InterPro:IPR001878
InterPro:IPR001969 InterPro:IPR001995 InterPro:IPR002156
InterPro:IPR003308 InterPro:IPR008916 InterPro:IPR008919
InterPro:IPR010659 InterPro:IPR010661 InterPro:IPR010999
InterPro:IPR012337 InterPro:IPR012344 Pfam:PF00075 Pfam:PF00078
Pfam:PF00098 Pfam:PF00540 Pfam:PF00552 Pfam:PF00607 Pfam:PF00665
Pfam:PF02022 Pfam:PF06815 Pfam:PF06817 PRINTS:PR00234
PROSITE:PS00141 PROSITE:PS50158 PROSITE:PS50175 PROSITE:PS50876
PROSITE:PS50878 PROSITE:PS50879 PROSITE:PS50994 PROSITE:PS51027
SMART:SM00343 GO:GO:0005829 Reactome:REACT_116125 GO:GO:0005654
GO:GO:0030430 PDB:2X4U PDBsum:2X4U GO:GO:0016020 GO:GO:0046872
GO:GO:0003677 GO:GO:0005198 GO:GO:0008270 GO:GO:0006508
GO:GO:0003723 GO:GO:0046718 GO:GO:0020002 GO:GO:0006310
GO:GO:0090305 SUPFAM:SSF53098 GO:GO:0003964 GO:GO:0006278
Gene3D:4.10.60.10 SUPFAM:SSF57756 DrugBank:DB01093 GO:GO:0030260
GO:GO:0004190 Gene3D:2.40.70.10 InterPro:IPR021109 SUPFAM:SSF50630
GO:GO:0004523 GO:GO:0015074 GO:GO:0075713 GO:GO:0042025
GO:GO:0003887 DrugBank:DB01264 DrugBank:DB01601 GO:GO:0019028
EMBL:M15654 EMBL:K02083 EMBL:X01762 Gene3D:1.10.1200.30
Gene3D:1.10.150.90 Gene3D:1.10.375.10 SUPFAM:SSF47353
SUPFAM:SSF47943 SUPFAM:SSF47836 GO:GO:0019061 GO:GO:0075732
Gene3D:1.10.10.200 InterPro:IPR017856 SUPFAM:SSF50122
SUPFAM:SSF46919 InterPro:IPR018061 Pfam:PF00077 PDB:1KJH
PDBsum:1KJH GO:GO:0004533 GO:GO:0039651 GO:GO:0046797
Gene3D:2.30.30.10 PIR:A03965 PIR:A03967 PDB:1A9M PDB:1AJV PDB:1AJX
PDB:1AXA PDB:1BQM PDB:1BQN PDB:1D4H PDB:1D4I PDB:1D4J PDB:1DLO
PDB:1DW6 PDB:1EBK PDB:1EBW PDB:1EBY PDB:1EBZ PDB:1EC0 PDB:1EC1
PDB:1EC2 PDB:1EC3 PDB:1EET PDB:1G35 PDB:1GNM PDB:1GNN PDB:1GNO
PDB:1HAR PDB:1HBV PDB:1HEF PDB:1HEG PDB:1HIH PDB:1HMV PDB:1HNI
PDB:1HNV PDB:1HOS PDB:1HPS PDB:1HPZ PDB:1HQE PDB:1HQU PDB:1HRH
PDB:1HTE PDB:1HTF PDB:1HTG PDB:1HVI PDB:1HVK PDB:1HVP PDB:1HVU
PDB:1HYS PDB:1IKV PDB:1IKW PDB:1IKX PDB:1IKY PDB:1J5O PDB:1MER
PDB:1MES PDB:1MET PDB:1MEU PDB:1N5Y PDB:1N6Q PDB:1NPA PDB:1NPV
PDB:1NPW PDB:1QE1 PDB:1QMC PDB:1R0A PDB:1RDH PDB:1RTD PDB:1RVL
PDB:1RVM PDB:1RVN PDB:1RVO PDB:1RVP PDB:1RVQ PDB:1RVR PDB:1S6P
PDB:1S6Q PDB:1S9E PDB:1S9G PDB:1SBG PDB:1SUQ PDB:1SV5 PDB:1T03
PDB:1T05 PDB:1T7K PDB:1TV6 PDB:1TVR PDB:1UWB PDB:1W5V PDB:1W5W
PDB:1W5X PDB:1W5Y PDB:1YT9 PDB:1ZP8 PDB:1ZPA PDB:1ZSF PDB:1ZSR
PDB:2AQU PDB:2B5J PDB:2B6A PDB:2BAN PDB:2BBB PDB:2BE2 PDB:2EXF
PDB:2G69 PDB:2HB3 PDB:2HMI PDB:2HNZ PDB:2HS1 PDB:2HS2 PDB:2I4D
PDB:2I4U PDB:2I4V PDB:2I4W PDB:2I4X PDB:2I5J PDB:2IAJ PDB:2IC3
PDB:2IDW PDB:2IEO PDB:2L45 PDB:2L46 PDB:2L4L PDB:2UXZ PDB:2UY0
PDB:2VG5 PDB:2VG6 PDB:2VG7 PDB:2YKM PDB:2YKN PDB:2ZD1 PDB:2ZE2
PDB:3AVI PDB:3BGR PDB:3DLK PDB:3GGA PDB:3GGV PDB:3GGX PDB:3HVT
PDB:3IG1 PDB:3IRX PDB:3IS9 PDB:3ISN PDB:3ITH PDB:3JSM PDB:3JYT
PDB:3K2P PDB:3K4V PDB:3KLE PDB:3KLF PDB:3KLG PDB:3KLH PDB:3KLI
PDB:3NDT PDB:3NU3 PDB:3NU4 PDB:3NU5 PDB:3NU6 PDB:3NU9 PDB:3NUJ
PDB:3NUO PDB:3OK9 PDB:3PSU PDB:3QAA PDB:3QLH PDB:3QO9 PDB:3TKG
PDB:3TKW PDB:3TL9 PDB:3TLH PDB:3V4I PDB:3V6D PDB:3V81 PDB:4DG1
PDB:4H4M PDB:4H4O PDB:4I2P PDB:4I2Q PDBsum:1A9M PDBsum:1AJV
PDBsum:1AJX PDBsum:1AXA PDBsum:1BQM PDBsum:1BQN PDBsum:1D4H
PDBsum:1D4I PDBsum:1D4J PDBsum:1DLO PDBsum:1DW6 PDBsum:1EBK
PDBsum:1EBW PDBsum:1EBY PDBsum:1EBZ PDBsum:1EC0 PDBsum:1EC1
PDBsum:1EC2 PDBsum:1EC3 PDBsum:1EET PDBsum:1G35 PDBsum:1GNM
PDBsum:1GNN PDBsum:1GNO PDBsum:1HAR PDBsum:1HBV PDBsum:1HEF
PDBsum:1HEG PDBsum:1HIH PDBsum:1HMV PDBsum:1HNI PDBsum:1HNV
PDBsum:1HOS PDBsum:1HPS PDBsum:1HPZ PDBsum:1HQE PDBsum:1HQU
PDBsum:1HRH PDBsum:1HTE PDBsum:1HTF PDBsum:1HTG PDBsum:1HVI
PDBsum:1HVK PDBsum:1HVP PDBsum:1HVU PDBsum:1HYS PDBsum:1IKV
PDBsum:1IKW PDBsum:1IKX PDBsum:1IKY PDBsum:1J5O PDBsum:1MER
PDBsum:1MES PDBsum:1MET PDBsum:1MEU PDBsum:1N5Y PDBsum:1N6Q
PDBsum:1NPA PDBsum:1NPV PDBsum:1NPW PDBsum:1QE1 PDBsum:1QMC
PDBsum:1R0A PDBsum:1RDH PDBsum:1RTD PDBsum:1RVL PDBsum:1RVM
PDBsum:1RVN PDBsum:1RVO PDBsum:1RVP PDBsum:1RVQ PDBsum:1RVR
PDBsum:1S6P PDBsum:1S6Q PDBsum:1S9E PDBsum:1S9G PDBsum:1SBG
PDBsum:1SUQ PDBsum:1SV5 PDBsum:1T03 PDBsum:1T05 PDBsum:1T7K
PDBsum:1TV6 PDBsum:1TVR PDBsum:1UWB PDBsum:1W5V PDBsum:1W5W
PDBsum:1W5X PDBsum:1W5Y PDBsum:1YT9 PDBsum:1ZP8 PDBsum:1ZPA
PDBsum:1ZSF PDBsum:1ZSR PDBsum:2AQU PDBsum:2B5J PDBsum:2B6A
PDBsum:2BAN PDBsum:2BBB PDBsum:2BE2 PDBsum:2EXF PDBsum:2G69
PDBsum:2HB3 PDBsum:2HMI PDBsum:2HNZ PDBsum:2HS1 PDBsum:2HS2
PDBsum:2I4D PDBsum:2I4U PDBsum:2I4V PDBsum:2I4W PDBsum:2I4X
PDBsum:2I5J PDBsum:2IAJ PDBsum:2IC3 PDBsum:2IDW PDBsum:2IEO
PDBsum:2L45 PDBsum:2L46 PDBsum:2L4L PDBsum:2UXZ PDBsum:2UY0
PDBsum:2VG5 PDBsum:2VG6 PDBsum:2VG7 PDBsum:2YKM PDBsum:2YKN
PDBsum:2ZD1 PDBsum:2ZE2 PDBsum:3AVI PDBsum:3BGR PDBsum:3DLK
PDBsum:3GGA PDBsum:3GGV PDBsum:3GGX PDBsum:3HVT PDBsum:3IG1
PDBsum:3IRX PDBsum:3IS9 PDBsum:3ISN PDBsum:3ITH PDBsum:3JSM
PDBsum:3JYT PDBsum:3K2P PDBsum:3K4V PDBsum:3KLE PDBsum:3KLF
PDBsum:3KLG PDBsum:3KLH PDBsum:3KLI PDBsum:3NDT PDBsum:3NU3
PDBsum:3NU4 PDBsum:3NU5 PDBsum:3NU6 PDBsum:3NU9 PDBsum:3NUJ
PDBsum:3NUO PDBsum:3OK9 PDBsum:3PSU PDBsum:3QAA PDBsum:3QLH
PDBsum:3QO9 PDBsum:3TKG PDBsum:3TKW PDBsum:3TL9 PDBsum:3TLH
PDBsum:3V4I PDBsum:3V6D PDBsum:3V81 PDBsum:4DG1 PDBsum:4H4M
PDBsum:4H4O PDBsum:4I2P PDBsum:4I2Q ProteinModelPortal:P03366
SMR:P03366 IntAct:P03366 MINT:MINT-111903 SABIO-RK:P03366
ChEMBL:CHEMBL5823 EvolutionaryTrace:P03366 Uniprot:P03366
Length = 1447
Score = 108 (43.1 bits), Expect = 0.00052, P = 0.00052
Identities = 17/45 (37%), Positives = 24/45 (53%)
Query: 75 KSSIICYNCNSSGHFARNCPNDSSKRCYACHQAGHMAKECPGQTA 119
+ + C+NC GH ARNC K C+ C + GH K+C + A
Sbjct: 387 RKMVKCFNCGKEGHTARNCRAPRKKGCWKCGKEGHQMKDCTERQA 431
>UNIPROTKB|P24740 [details] [associations]
symbol:gag-pol "Gag-Pol polyprotein" species:11703 "Human
immunodeficiency virus type 1 (STRAIN UGANDAN / ISOLATE U455)"
[GO:0005654 "nucleoplasm" evidence=TAS] [GO:0005829 "cytosol"
evidence=TAS] [GO:0006278 "RNA-dependent DNA replication"
evidence=TAS] [GO:0016032 "viral reproduction" evidence=TAS]
[GO:0019061 "uncoating of virus" evidence=TAS] [GO:0030260 "entry
into host cell" evidence=TAS] InterPro:IPR000071 InterPro:IPR000477
InterPro:IPR000721 InterPro:IPR001037 InterPro:IPR001584
InterPro:IPR001878 InterPro:IPR001969 InterPro:IPR001995
InterPro:IPR002156 InterPro:IPR003308 InterPro:IPR008916
InterPro:IPR008919 InterPro:IPR010659 InterPro:IPR010661
InterPro:IPR010999 InterPro:IPR012337 InterPro:IPR012344
Pfam:PF00075 Pfam:PF00078 Pfam:PF00098 Pfam:PF00540 Pfam:PF00552
Pfam:PF00607 Pfam:PF00665 Pfam:PF02022 Pfam:PF06815 Pfam:PF06817
PRINTS:PR00234 PROSITE:PS00141 PROSITE:PS50158 PROSITE:PS50175
PROSITE:PS50876 PROSITE:PS50878 PROSITE:PS50879 PROSITE:PS50994
PROSITE:PS51027 SMART:SM00343 GO:GO:0005829 Reactome:REACT_116125
GO:GO:0005654 GO:GO:0030430 PDB:1E27 PDBsum:1E27 GO:GO:0016020
GO:GO:0046872 GO:GO:0003677 GO:GO:0005198 GO:GO:0008270
GO:GO:0006508 GO:GO:0003723 GO:GO:0046718 GO:GO:0020002
GO:GO:0006310 GO:GO:0090305 SUPFAM:SSF53098 GO:GO:0003964
GO:GO:0006278 Gene3D:4.10.60.10 SUPFAM:SSF57756 GO:GO:0030260
GO:GO:0004190 Gene3D:2.40.70.10 InterPro:IPR021109 SUPFAM:SSF50630
GO:GO:0004523 GO:GO:0015074 GO:GO:0075713 GO:GO:0042025
GO:GO:0003887 GO:GO:0019028 Gene3D:1.10.1200.30 Gene3D:1.10.150.90
Gene3D:1.10.375.10 SUPFAM:SSF47353 SUPFAM:SSF47943 SUPFAM:SSF47836
GO:GO:0019061 EMBL:M62320 PDB:1NCP PDBsum:1NCP GO:GO:0075732
Gene3D:1.10.10.200 InterPro:IPR017856 SUPFAM:SSF50122
SUPFAM:SSF46919 InterPro:IPR018061 Pfam:PF00077 GO:GO:0004533
GO:GO:0039651 GO:GO:0046797 Gene3D:2.30.30.10 PDB:3LZS PDB:3LZU
PDBsum:3LZS PDBsum:3LZU ProteinModelPortal:P24740 SMR:P24740
EvolutionaryTrace:P24740 Uniprot:P24740
Length = 1428
Score = 107 (42.7 bits), Expect = 0.00078, P = 0.00078
Identities = 17/42 (40%), Positives = 23/42 (54%)
Query: 78 IICYNCNSSGHFARNCPNDSSKRCYACHQAGHMAKECPGQTA 119
I C+NC GH A+NC K C+ C + GH K+C + A
Sbjct: 384 IKCFNCGKEGHLAKNCRAPRKKGCWKCGKEGHQMKDCTERQA 425
>UNIPROTKB|P04585 [details] [associations]
symbol:gag-pol "Gag-Pol polyprotein" species:11706 "HIV-1
M:B_HXB2R" [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0005829
"cytosol" evidence=TAS] [GO:0006278 "RNA-dependent DNA replication"
evidence=TAS] [GO:0016032 "viral reproduction" evidence=TAS]
[GO:0019061 "uncoating of virus" evidence=TAS] [GO:0030260 "entry
into host cell" evidence=TAS] [GO:0042802 "identical protein
binding" evidence=IPI] InterPro:IPR000071 InterPro:IPR000477
InterPro:IPR000721 InterPro:IPR001037 InterPro:IPR001584
InterPro:IPR001878 InterPro:IPR001969 InterPro:IPR001995
InterPro:IPR002156 InterPro:IPR003308 InterPro:IPR008916
InterPro:IPR008919 InterPro:IPR010659 InterPro:IPR010661
InterPro:IPR010999 InterPro:IPR012337 InterPro:IPR012344
Pfam:PF00075 Pfam:PF00078 Pfam:PF00098 Pfam:PF00540 Pfam:PF00552
Pfam:PF00607 Pfam:PF00665 Pfam:PF02022 Pfam:PF06815 Pfam:PF06817
PRINTS:PR00234 PROSITE:PS00141 PROSITE:PS50158 PROSITE:PS50175
PROSITE:PS50876 PROSITE:PS50878 PROSITE:PS50879 PROSITE:PS50994
PROSITE:PS51027 SMART:SM00343 GO:GO:0005829 Reactome:REACT_116125
GO:GO:0005654 GO:GO:0030430 GO:GO:0016020 GO:GO:0046872
GO:GO:0003677 GO:GO:0005198 GO:GO:0008270 GO:GO:0006508
GO:GO:0003723 GO:GO:0046718 GO:GO:0020002 GO:GO:0006310
GO:GO:0090305 SUPFAM:SSF53098 GO:GO:0003964 GO:GO:0006278
Gene3D:4.10.60.10 SUPFAM:SSF57756 GO:GO:0030260 GO:GO:0004190
Gene3D:2.40.70.10 InterPro:IPR021109 SUPFAM:SSF50630 GO:GO:0004523
GO:GO:0015074 GO:GO:0075713 GO:GO:0042025 GO:GO:0003887
GO:GO:0019028 EMBL:K03455 EMBL:AF033819 Gene3D:1.10.1200.30
Gene3D:1.10.150.90 Gene3D:1.10.375.10 SUPFAM:SSF47353
SUPFAM:SSF47943 SUPFAM:SSF47836 GO:GO:0019061 PDB:1NCP PDBsum:1NCP
GO:GO:0075732 Gene3D:1.10.10.200 InterPro:IPR017856 SUPFAM:SSF50122
SUPFAM:SSF46919 InterPro:IPR018061 Pfam:PF00077 GO:GO:0004533
GO:GO:0039651 GO:GO:0046797 Gene3D:2.30.30.10 PDB:1RTD PDB:1T05
PDB:2HNZ PDBsum:1RTD PDBsum:1T05 PDBsum:2HNZ RefSeq:NP_057849.4
PDB:1A30 PDB:1BV7 PDB:1BV9 PDB:1BVE PDB:1BVG PDB:1BWA PDB:1BWB
PDB:1C0T PDB:1C0U PDB:1C1B PDB:1C1C PDB:1DMP PDB:1DTQ PDB:1DTT
PDB:1E6J PDB:1EP4 PDB:1ESK PDB:1EX4 PDB:1EXQ PDB:1FB7 PDB:1FK9
PDB:1FKO PDB:1FKP PDB:1G6L PDB:1HIV PDB:1HVH PDB:1HVR PDB:1HWR
PDB:1HXB PDB:1JKH PDB:1JLA PDB:1JLB PDB:1JLC PDB:1JLE PDB:1JLF
PDB:1JLG PDB:1JLQ PDB:1KLM PDB:1LV1 PDB:1LW0 PDB:1LW2 PDB:1LWC
PDB:1LWE PDB:1LWF PDB:1O1W PDB:1ODW PDB:1ODY PDB:1QBR PDB:1QBS
PDB:1QBT PDB:1QBU PDB:1REV PDB:1RT1 PDB:1RT2 PDB:1RT3 PDB:1RT4
PDB:1RT5 PDB:1RT6 PDB:1RT7 PDB:1RTH PDB:1RTI PDB:1RTJ PDB:1S1T
PDB:1S1U PDB:1S1V PDB:1S1W PDB:1S1X PDB:1TAM PDB:1TKT PDB:1TKX
PDB:1TKZ PDB:1TL1 PDB:1TL3 PDB:1VRT PDB:1VRU PDB:2HND PDB:2HNY
PDB:2KOD PDB:2NPH PDB:2OPP PDB:2OPQ PDB:2OPR PDB:2OPS PDB:2RF2
PDB:2RKI PDB:2WHH PDB:2WOM PDB:2WON PDB:2YNF PDB:2YNG PDB:2YNH
PDB:2YNI PDB:3AO2 PDB:3C6T PDB:3C6U PDB:3DI6 PDB:3DLE PDB:3DLG
PDB:3DM2 PDB:3DMJ PDB:3DOK PDB:3DOL PDB:3DOX PDB:3DRP PDB:3DRR
PDB:3DRS PDB:3DYA PDB:3E01 PDB:3FFI PDB:3I0R PDB:3I0S PDB:3KJV
PDB:3KK1 PDB:3KK2 PDB:3KK3 PDB:3KT2 PDB:3KT5 PDB:3LAK PDB:3LAL
PDB:3LAM PDB:3LAN PDB:3LP0 PDB:3LP1 PDB:3LP2 PDB:3M8P PDB:3M8Q
PDB:3MEC PDB:3MED PDB:3MEE PDB:3MEG PDB:3MIM PDB:3N3I PDB:3NBP
PDB:3PHV PDB:3QIN PDB:3QIO PDB:3QIP PDB:3T19 PDB:3T1A PDB:3TAM
PDB:4B3O PDB:4B3P PDB:4B3Q PDBsum:1A30 PDBsum:1BV7 PDBsum:1BV9
PDBsum:1BVE PDBsum:1BVG PDBsum:1BWA PDBsum:1BWB PDBsum:1C0T
PDBsum:1C0U PDBsum:1C1B PDBsum:1C1C PDBsum:1DMP PDBsum:1DTQ
PDBsum:1DTT PDBsum:1E6J PDBsum:1EP4 PDBsum:1ESK PDBsum:1EX4
PDBsum:1EXQ PDBsum:1FB7 PDBsum:1FK9 PDBsum:1FKO PDBsum:1FKP
PDBsum:1G6L PDBsum:1HIV PDBsum:1HVH PDBsum:1HVR PDBsum:1HWR
PDBsum:1HXB PDBsum:1JKH PDBsum:1JLA PDBsum:1JLB PDBsum:1JLC
PDBsum:1JLE PDBsum:1JLF PDBsum:1JLG PDBsum:1JLQ PDBsum:1KLM
PDBsum:1LV1 PDBsum:1LW0 PDBsum:1LW2 PDBsum:1LWC PDBsum:1LWE
PDBsum:1LWF PDBsum:1O1W PDBsum:1ODW PDBsum:1ODY PDBsum:1QBR
PDBsum:1QBS PDBsum:1QBT PDBsum:1QBU PDBsum:1REV PDBsum:1RT1
PDBsum:1RT2 PDBsum:1RT3 PDBsum:1RT4 PDBsum:1RT5 PDBsum:1RT6
PDBsum:1RT7 PDBsum:1RTH PDBsum:1RTI PDBsum:1RTJ PDBsum:1S1T
PDBsum:1S1U PDBsum:1S1V PDBsum:1S1W PDBsum:1S1X PDBsum:1TAM
PDBsum:1TKT PDBsum:1TKX PDBsum:1TKZ PDBsum:1TL1 PDBsum:1TL3
PDBsum:1VRT PDBsum:1VRU PDBsum:2HND PDBsum:2HNY PDBsum:2KOD
PDBsum:2NPH PDBsum:2OPP PDBsum:2OPQ PDBsum:2OPR PDBsum:2OPS
PDBsum:2RF2 PDBsum:2RKI PDBsum:2WHH PDBsum:2WOM PDBsum:2WON
PDBsum:2YNF PDBsum:2YNG PDBsum:2YNH PDBsum:2YNI PDBsum:3AO2
PDBsum:3C6T PDBsum:3C6U PDBsum:3DI6 PDBsum:3DLE PDBsum:3DLG
PDBsum:3DM2 PDBsum:3DMJ PDBsum:3DOK PDBsum:3DOL PDBsum:3DOX
PDBsum:3DRP PDBsum:3DRR PDBsum:3DRS PDBsum:3DYA PDBsum:3E01
PDBsum:3FFI PDBsum:3I0R PDBsum:3I0S PDBsum:3KJV PDBsum:3KK1
PDBsum:3KK2 PDBsum:3KK3 PDBsum:3KT2 PDBsum:3KT5 PDBsum:3LAK
PDBsum:3LAL PDBsum:3LAM PDBsum:3LAN PDBsum:3LP0 PDBsum:3LP1
PDBsum:3LP2 PDBsum:3M8P PDBsum:3M8Q PDBsum:3MEC PDBsum:3MED
PDBsum:3MEE PDBsum:3MEG PDBsum:3MIM PDBsum:3N3I PDBsum:3NBP
PDBsum:3PHV PDBsum:3QIN PDBsum:3QIO PDBsum:3QIP PDBsum:3T19
PDBsum:3T1A PDBsum:3TAM PDBsum:4B3O PDBsum:4B3P PDBsum:4B3Q
ProteinModelPortal:P04585 SMR:P04585 MINT:MINT-111862
SABIO-RK:P04585 EvolutionaryTrace:P04585 Uniprot:P04585
Length = 1435
Score = 107 (42.7 bits), Expect = 0.00078, P = 0.00078
Identities = 17/40 (42%), Positives = 22/40 (55%)
Query: 80 CYNCNSSGHFARNCPNDSSKRCYACHQAGHMAKECPGQTA 119
C+NC GH ARNC K C+ C + GH K+C + A
Sbjct: 392 CFNCGKEGHTARNCRAPRKKGCWKCGKEGHQMKDCTERQA 431
>UNIPROTKB|P04589 [details] [associations]
symbol:gag-pol "Gag-Pol polyprotein" species:11689 "Human
immunodeficiency virus type 1 (ELI ISOLATE)" [GO:0005654
"nucleoplasm" evidence=TAS] [GO:0005829 "cytosol" evidence=TAS]
[GO:0006278 "RNA-dependent DNA replication" evidence=TAS]
[GO:0016032 "viral reproduction" evidence=TAS] [GO:0019061
"uncoating of virus" evidence=TAS] [GO:0030260 "entry into host
cell" evidence=TAS] InterPro:IPR000071 InterPro:IPR000477
InterPro:IPR000721 InterPro:IPR001037 InterPro:IPR001584
InterPro:IPR001878 InterPro:IPR001969 InterPro:IPR001995
InterPro:IPR002156 InterPro:IPR003308 InterPro:IPR008916
InterPro:IPR008919 InterPro:IPR010659 InterPro:IPR010661
InterPro:IPR010999 InterPro:IPR012337 InterPro:IPR012344
Pfam:PF00075 Pfam:PF00078 Pfam:PF00098 Pfam:PF00540 Pfam:PF00552
Pfam:PF00607 Pfam:PF00665 Pfam:PF02022 Pfam:PF06815 Pfam:PF06817
PRINTS:PR00234 PROSITE:PS00141 PROSITE:PS50158 PROSITE:PS50175
PROSITE:PS50876 PROSITE:PS50878 PROSITE:PS50879 PROSITE:PS50994
PROSITE:PS51027 SMART:SM00343 GO:GO:0005829 Reactome:REACT_116125
GO:GO:0005654 GO:GO:0030430 GO:GO:0016020 GO:GO:0046872
GO:GO:0003677 GO:GO:0005198 GO:GO:0008270 GO:GO:0006508
GO:GO:0003723 GO:GO:0046718 GO:GO:0020002 GO:GO:0006310
GO:GO:0090305 SUPFAM:SSF53098 GO:GO:0003964 GO:GO:0006278
Gene3D:4.10.60.10 SUPFAM:SSF57756 GO:GO:0030260 GO:GO:0004190
Gene3D:2.40.70.10 InterPro:IPR021109 SUPFAM:SSF50630 GO:GO:0004523
GO:GO:0015074 GO:GO:0075713 GO:GO:0042025 GO:GO:0003887
GO:GO:0019028 EMBL:K03454 Gene3D:1.10.1200.30 Gene3D:1.10.150.90
Gene3D:1.10.375.10 SUPFAM:SSF47353 SUPFAM:SSF47943 SUPFAM:SSF47836
GO:GO:0019061 GO:GO:0075732 Gene3D:1.10.10.200 InterPro:IPR017856
SUPFAM:SSF50122 SUPFAM:SSF46919 InterPro:IPR018061 Pfam:PF00077
GO:GO:0004533 GO:GO:0039651 GO:GO:0046797 Gene3D:2.30.30.10
ProteinModelPortal:P04589 SMR:P04589 Uniprot:P04589
Length = 1435
Score = 107 (42.7 bits), Expect = 0.00078, P = 0.00078
Identities = 17/42 (40%), Positives = 23/42 (54%)
Query: 78 IICYNCNSSGHFARNCPNDSSKRCYACHQAGHMAKECPGQTA 119
I C+NC GH A+NC K C+ C + GH K+C + A
Sbjct: 391 IKCFNCGKEGHIAKNCRAPRKKGCWRCGKEGHQLKDCTERQA 432
>UNIPROTKB|P69730 [details] [associations]
symbol:gag "Gag polyprotein" species:11670 "Equine
infectious anemia virus (CLONE 1369)" [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR000721 InterPro:IPR001878
InterPro:IPR008916 InterPro:IPR008919 InterPro:IPR010999
InterPro:IPR012344 Pfam:PF00098 Pfam:PF00607 PROSITE:PS50158
SMART:SM00343 GO:GO:0019048 GO:GO:0046872 GO:GO:0005198
GO:GO:0008270 GO:GO:0003676 Gene3D:4.10.60.10 SUPFAM:SSF57756
GO:GO:0019028 EMBL:M16575 PIR:A03949 RefSeq:NP_056901.1
ProteinModelPortal:P69730 SMR:P69730 IntAct:P69730 GeneID:1489984
GO:GO:0019076 Gene3D:1.10.1200.30 Gene3D:1.10.150.90
Gene3D:1.10.375.10 InterPro:IPR014834 Pfam:PF08723 SUPFAM:SSF47353
SUPFAM:SSF47943 SUPFAM:SSF47836 Uniprot:P69730
Length = 486
Score = 104 (41.7 bits), Expect = 0.00080, P = 0.00080
Identities = 18/50 (36%), Positives = 27/50 (54%)
Query: 65 QGHVAKDCTVKSSIICYNCNSSGHFARNCPNDSSKRCYACHQAGHMAKEC 114
+G K +K++ CYNC GH + C + K C+ C Q GH +K+C
Sbjct: 368 KGGALKGGPLKAAQTCYNCGKPGHLSSQCR--APKVCFKCKQPGHFSKQC 415
>UNIPROTKB|P05888 [details] [associations]
symbol:gag "Gag polyprotein" species:11696 "HIV-1 M:B_MN"
[GO:0005654 "nucleoplasm" evidence=TAS] [GO:0005829 "cytosol"
evidence=TAS] [GO:0006278 "RNA-dependent DNA replication"
evidence=TAS] [GO:0010008 "endosome membrane" evidence=TAS]
[GO:0016032 "viral reproduction" evidence=TAS] [GO:0019061
"uncoating of virus" evidence=TAS] [GO:0030260 "entry into host
cell" evidence=TAS] [GO:0046788 "egress of virus within host cell"
evidence=TAS] InterPro:IPR000071 InterPro:IPR000721
InterPro:IPR001878 InterPro:IPR008916 InterPro:IPR008919
InterPro:IPR010999 InterPro:IPR012344 Pfam:PF00098 Pfam:PF00540
Pfam:PF00607 PRINTS:PR00234 PROSITE:PS50158 SMART:SM00343
GO:GO:0005829 Reactome:REACT_116125 GO:GO:0005654 GO:GO:0030430
GO:GO:0046872 GO:GO:0005198 GO:GO:0008270 GO:GO:0003723
GO:GO:0010008 GO:GO:0020002 GO:GO:0006278 Gene3D:4.10.60.10
SUPFAM:SSF57756 GO:GO:0030260 GO:GO:0042025 GO:GO:0019028
EMBL:M17449 GO:GO:0019076 Gene3D:1.10.1200.30 Gene3D:1.10.150.90
Gene3D:1.10.375.10 SUPFAM:SSF47353 SUPFAM:SSF47943 SUPFAM:SSF47836
GO:GO:0046788 GO:GO:0019061 InterPro:IPR014817 Pfam:PF08705
PIR:A38068 PDB:1AAF PDBsum:1AAF ProteinModelPortal:P05888
SMR:P05888 MINT:MINT-7014121 BindingDB:P05888
EvolutionaryTrace:P05888 Uniprot:P05888
Length = 507
Score = 104 (41.7 bits), Expect = 0.00085, P = 0.00085
Identities = 16/42 (38%), Positives = 23/42 (54%)
Query: 78 IICYNCNSSGHFARNCPNDSSKRCYACHQAGHMAKECPGQTA 119
I C+NC GH A+NC + C+ C + GH K+C + A
Sbjct: 393 IKCFNCGKEGHIAKNCRAPRKRGCWKCGKEGHQMKDCTERQA 434
>DICTYBASE|DDB_G0271832 [details] [associations]
symbol:DDB_G0271832 "Zinc finger CCHC
domain-containing protein 7" species:44689 "Dictyostelium
discoideum" [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR001878
PROSITE:PS50158 SMART:SM00343 dictyBase:DDB_G0271832 GO:GO:0008270
GO:GO:0003676 EMBL:AAFI02000006 Gene3D:4.10.60.10 SUPFAM:SSF57756
RefSeq:XP_645525.1 ProteinModelPortal:Q55AJ7
EnsemblProtists:DDB0216923 GeneID:8618154 KEGG:ddi:DDB_G0271832
eggNOG:NOG260401 InParanoid:Q55AJ7 Uniprot:Q55AJ7
Length = 772
Score = 105 (42.0 bits), Expect = 0.00094, P = 0.00094
Identities = 23/83 (27%), Positives = 35/83 (42%)
Query: 6 TIQCYNCFDFGHYQYSCPQKSSADARGDKVGIVCYKCNNYGHFARECATESVTCYNCSGQ 65
+I+C C D H+ + CP D +K C++C +GH C+ C+ C
Sbjct: 273 SIKCERCGDHDHFSFECPH----DIE-EKP---CFRCGEFGHQIASCSV--YVCFRCGLH 322
Query: 66 GHVAKDCTVKSSIICYNCNSSGH 88
GH + C K +SS H
Sbjct: 323 GHYPRQCLPKYQKYFNEIDSSEH 345
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.321 0.132 0.448 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 152 152 0.00073 105 3 11 22 0.45 31
30 0.40 34
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 123
No. of states in DFA: 579 (62 KB)
Total size of DFA: 169 KB (2096 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 16.26u 0.10s 16.36t Elapsed: 00:00:02
Total cpu time: 16.29u 0.10s 16.39t Elapsed: 00:00:02
Start: Thu Aug 15 11:01:31 2013 End: Thu Aug 15 11:01:33 2013
WARNINGS ISSUED: 1