BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy16575
(247 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1W52|X Chain X, Crystal Structure Of A Proteolyzed Form Of Pancreatic
Lipase Related Protein 2 From Horse
Length = 452
Score = 85.1 bits (209), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 55/184 (29%), Positives = 86/184 (46%), Gaps = 9/184 (4%)
Query: 15 SLKYAGWDPHKRNVIIIHGFNQSESQSPMTXXXXXXXXXXXXNVFMLDFADLAPFPCYLS 74
++K + + ++ +IHGF S + N +D++ A Y
Sbjct: 60 TIKSSNFQSSRKTHFVIHGFRDRGEDSWPSDMCKKILQVETTNCISVDWSSGAKAE-YTQ 118
Query: 75 SLSNTRLV-AQCAAQFYSHLTHHGASAYDIHCVGHSLGAHICGMMSNHLTHRMHKIIGID 133
++ N R+V A+ A LT + ++H +GHSLGAH G L R+ ++ G+D
Sbjct: 119 AVQNIRIVGAETAYLIQQLLTELSYNPENVHIIGHSLGAHTAGEAGRRLEGRVGRVTGLD 178
Query: 134 PARPLVDRYGDKAFRLTRDDANFVQVIHTNA------WFLGEAPQVGHVDFCVNGGRMQP 187
PA P ++ RL DA FV VIHT+A G + +VGH+DF NGG+ P
Sbjct: 179 PAEPCFQDASEEV-RLDPSDAQFVDVIHTDASPMLPSLGFGMSQKVGHMDFFPNGGKQMP 237
Query: 188 SCTK 191
C +
Sbjct: 238 GCKR 241
>pdb|1BU8|A Chain A, Rat Pancreatic Lipase Related Protein 2
Length = 452
Score = 82.0 bits (201), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 66/241 (27%), Positives = 107/241 (44%), Gaps = 24/241 (9%)
Query: 7 RINILKSNSLKYAGWDPHKRNVIIIHGFNQSESQSPMTXXXXXXXXXXXXNVFMLDFADL 66
+I+ + +++K++ + ++ I+HGF + N +D+
Sbjct: 52 KISATEPDTIKFSNFQLDRKTRFIVHGFIDKGEDGWLLDMCKKMFQVEKVNCICVDWRRG 111
Query: 67 APFPCYLSSLSNTRLV-AQCAAQFYSHLTHHGASAYDIHCVGHSLGAHICGMMSNHLTHR 125
+ Y + NTR+V A+ A T G S ++H +GHSLGAH+ G L
Sbjct: 112 SRTE-YTQASYNTRVVGAEIAFLVQVLSTEMGYSPENVHLIGHSLGAHVVGEAGRRLEGH 170
Query: 126 MHKIIGIDPARPLVDRYGDKAFRLTRDDANFVQVIHTNA------WFLGEAPQVGHVDFC 179
+ +I G+DPA P ++ RL DA FV VIHT++ G + +VGH+DF
Sbjct: 171 VGRITGLDPAEPCFQGLPEEV-RLDPSDAMFVDVIHTDSAPIIPYLGFGMSQKVGHLDFF 229
Query: 180 VNGGRMQPSCTK-------------EGRMIRRARCSHFMGACFFAATVSERGRRHQGHPC 226
NGG+ P C K EG A C+H ++A+++ G+PC
Sbjct: 230 PNGGKEMPGCQKNILSTIVDINGIWEGTQNFVA-CNHLRSYKYYASSILNP-DGFLGYPC 287
Query: 227 S 227
S
Sbjct: 288 S 288
>pdb|2PPL|A Chain A, Human Pancreatic Lipase-Related Protein 1
Length = 485
Score = 79.0 bits (193), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 56/174 (32%), Positives = 81/174 (46%), Gaps = 10/174 (5%)
Query: 25 KRNVIIIHGFNQSESQSPMTXXXXXXXXXXXXNVFMLDFADLAPFPCYLSSLSNTRLV-A 83
++ IIHGF +S +T N +D+ + Y + +N R+V A
Sbjct: 95 RKTRFIIHGFIDKGDESWVTDMCKKLFEVEEVNCICVDWKKGSQ-ATYTQAANNVRVVGA 153
Query: 84 QCAAQFYSHLTHHGASAYDIHCVGHSLGAHICGMMSNHLTHRMHKIIGIDPARPLVDRYG 143
Q A LT + +H +GHSLGAH+ G + T + +I G+DP +
Sbjct: 154 QVAQMLDILLTEYSYPPSKVHLIGHSLGAHVAGEAGSK-TPGLSRITGLDPVEASFESTP 212
Query: 144 DKAFRLTRDDANFVQVIHTNAWFL------GEAPQVGHVDFCVNGGRMQPSCTK 191
++ RL DA+FV VIHT+A L G Q+GH+DF NGG P C K
Sbjct: 213 EEV-RLDPSDADFVDVIHTDAAPLIPFLGFGTNQQMGHLDFFPNGGESMPGCKK 265
>pdb|1GPL|A Chain A, Rp2 Lipase
Length = 432
Score = 78.2 bits (191), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 54/182 (29%), Positives = 84/182 (46%), Gaps = 9/182 (4%)
Query: 15 SLKYAGWDPHKRNVIIIHGFNQSESQSPMTXXXXXXXXXXXXNVFMLDFADLAPFPCYLS 74
++K + ++ +++ IIHGF S S ++ N +D+ + Y
Sbjct: 60 TIKASNFNLNRKTRFIIHGFTDSGENSWLSDMCKNMFQVEKVNCICVDWKGGSK-AQYSQ 118
Query: 75 SLSNTRLVAQCAAQFYSHL-THHGASAYDIHCVGHSLGAHICGMMSNHLTHRMHKIIGID 133
+ N R+V A L T + ++H +GHSLGAH G L + +I G+D
Sbjct: 119 ASQNIRVVGAEVAYLVQVLSTSLNYAPENVHIIGHSLGAHTAGEAGKRLNGLVGRITGLD 178
Query: 134 PARPLVDRYGDKAFRLTRDDANFVQVIHTN------AWFLGEAPQVGHVDFCVNGGRMQP 187
PA P ++ RL DA FV VIHT+ + G + +VGH+DF NGG+ P
Sbjct: 179 PAEPYFQDTPEEV-RLDPSDAKFVDVIHTDISPILPSLGFGMSQKVGHMDFFPNGGKDMP 237
Query: 188 SC 189
C
Sbjct: 238 GC 239
>pdb|1ETH|A Chain A, Triacylglycerol LipaseCOLIPASE COMPLEX
pdb|1ETH|C Chain C, Triacylglycerol LipaseCOLIPASE COMPLEX
Length = 448
Score = 75.9 bits (185), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 53/174 (30%), Positives = 76/174 (43%), Gaps = 9/174 (5%)
Query: 25 KRNVIIIHGFNQSESQSPMTXXXXXXXXXXXXNVFMLDFADLAPFPCYLSSLSNTRLVAQ 84
++ IIHGF + ++ N +D+ Y + N R+V
Sbjct: 69 RKTRFIIHGFIDKGEEDWLSNICKNLFKVESVNCICVDWKG-GSRTGYTQASQNIRIVGA 127
Query: 85 CAAQFYSHL-THHGASAYDIHCVGHSLGAHICGMMSNHLTHRMHKIIGIDPARPLVDRYG 143
A F L + G S ++H +GHSLG+H G + +I G+DPA P +
Sbjct: 128 EVAYFVEVLKSSLGYSPSNVHVIGHSLGSHAAGEAGRRTNGTIERITGLDPAEPCF-QGT 186
Query: 144 DKAFRLTRDDANFVQVIHTNA------WFLGEAPQVGHVDFCVNGGRMQPSCTK 191
+ RL DA FV VIHT+A G + VGH+DF NGG+ P C K
Sbjct: 187 PELVRLDPSDAKFVDVIHTDAAPIIPNLGFGMSQTVGHLDFFPNGGKQMPGCQK 240
>pdb|1LPA|B Chain B, Interfacial Activation Of The Lipase-Procolipase Complex
By Mixed Micelles Revealed By X-Ray Crystallography
pdb|1LPB|B Chain B, The 2.46 Angstroms Resolution Structure Of The Pancreatic
Lipase Colipase Complex Inhibited By A C11 Alkyl
Phosphonate
pdb|1N8S|A Chain A, Structure Of The Pancreatic Lipase-Colipase Complex
Length = 449
Score = 75.1 bits (183), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 55/186 (29%), Positives = 81/186 (43%), Gaps = 9/186 (4%)
Query: 13 SNSLKYAGWDPHKRNVIIIHGFNQSESQSPMTXXXXXXXXXXXXNVFMLDFADLAPFPCY 72
S+S+ + + +++ IIHGF ++ + N +D+ Y
Sbjct: 57 SSSISGSNFKTNRKTRFIIHGFIDKGEENWLANVCKNLFKVESVNCICVDWKG-GSRTGY 115
Query: 73 LSSLSNTRLVAQCAAQFYSHL-THHGASAYDIHCVGHSLGAHICGMMSNHLTHRMHKIIG 131
+ N R+V A F L + G S ++H +GHSLGAH G + +I G
Sbjct: 116 TQASQNIRIVGAEVAYFVEFLQSAFGYSPSNVHVIGHSLGAHAAGEAGRRTNGTIGRITG 175
Query: 132 IDPARPLVDRYGDKAFRLTRDDANFVQVIHTNA------WFLGEAPQVGHVDFCVNGGRM 185
+DPA P + + RL DA FV VIHT+ G + VGH+DF NGG
Sbjct: 176 LDPAEPCF-QGTPELVRLDPSDAKFVDVIHTDGAPIVPNLGFGMSQVVGHLDFFPNGGVE 234
Query: 186 QPSCTK 191
P C K
Sbjct: 235 MPGCKK 240
>pdb|1RP1|A Chain A, Dog Pancreatic Lipase Related Protein 1
Length = 450
Score = 75.1 bits (183), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 54/174 (31%), Positives = 81/174 (46%), Gaps = 10/174 (5%)
Query: 25 KRNVIIIHGFNQSESQSPMTXXXXXXXXXXXXNVFMLDFADLAPFPCYLSSLSNTRLVAQ 84
K+ IIHGF ++ + N +D+ + Y + +N R+V
Sbjct: 70 KKTRFIIHGFIDKGEENWLLDMCKNMFKVEEVNCICVDWKKGSQ-TSYTQAANNVRVVGA 128
Query: 85 CAAQFYSHLT-HHGASAYDIHCVGHSLGAHICGMMSNHLTHRMHKIIGIDPARPLVDRYG 143
AQ S L+ ++ S + +GHSLGAH+ G + T + +I G+DP
Sbjct: 129 QVAQMLSMLSANYSYSPSQVQLIGHSLGAHVAGEAGSR-TPGLGRITGLDPVEASFQGTP 187
Query: 144 DKAFRLTRDDANFVQVIHTNAWFL------GEAPQVGHVDFCVNGGRMQPSCTK 191
++ RL DA+FV VIHT+A L G + Q+GH+DF NGG P C K
Sbjct: 188 EEV-RLDPTDADFVDVIHTDAAPLIPFLGFGTSQQMGHLDFFPNGGEEMPGCKK 240
>pdb|2PVS|A Chain A, Structure Of Human Pancreatic Lipase Related Protein 2
Mutant N336q
pdb|2PVS|B Chain B, Structure Of Human Pancreatic Lipase Related Protein 2
Mutant N336q
Length = 452
Score = 73.9 bits (180), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 56/187 (29%), Positives = 86/187 (45%), Gaps = 9/187 (4%)
Query: 12 KSNSLKYAGWDPHKRNVIIIHGFNQSESQSPMTXXXXXXXXXXXXNVFMLDFADLAPFPC 71
+ ++++ + + ++ IIHGF S + N +D+
Sbjct: 57 EPDTIEASNFQLDRKTRFIIHGFLDKAEDSWPSDMCKKMFEVEKVNCICVDWRH-GSRAM 115
Query: 72 YLSSLSNTRLV-AQCAAQFYSHLTHHGASAYDIHCVGHSLGAHICGMMSNHLTHRMHKII 130
Y ++ N R+V A+ A + T G S D+H +GHSLGAH L R+ +I
Sbjct: 116 YTQAVQNIRVVGAETAFLIQALSTQLGYSLEDVHVIGHSLGAHTAAEAGRRLGGRVGRIT 175
Query: 131 GIDPARPLVDRYGDKAFRLTRDDANFVQVIHTN------AWFLGEAPQVGHVDFCVNGGR 184
G+DPA P ++ RL DA FV VIHT+ + G + +VGH+DF NGG+
Sbjct: 176 GLDPAGPCFQDEPEEV-RLDPSDAVFVDVIHTDSSPIVPSLGFGMSQKVGHLDFFPNGGK 234
Query: 185 MQPSCTK 191
P C K
Sbjct: 235 EMPGCKK 241
>pdb|2OXE|A Chain A, Structure Of The Human Pancreatic Lipase-Related Protein 2
pdb|2OXE|B Chain B, Structure Of The Human Pancreatic Lipase-Related Protein 2
Length = 466
Score = 73.6 bits (179), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 56/187 (29%), Positives = 86/187 (45%), Gaps = 9/187 (4%)
Query: 12 KSNSLKYAGWDPHKRNVIIIHGFNQSESQSPMTXXXXXXXXXXXXNVFMLDFADLAPFPC 71
+ ++++ + + ++ IIHGF S + N +D+
Sbjct: 59 EPDTIEASNFQLDRKTRFIIHGFLDKAEDSWPSDMCKKMFEVEKVNCICVDWRH-GSRAM 117
Query: 72 YLSSLSNTRLV-AQCAAQFYSHLTHHGASAYDIHCVGHSLGAHICGMMSNHLTHRMHKII 130
Y ++ N R+V A+ A + T G S D+H +GHSLGAH L R+ +I
Sbjct: 118 YTQAVQNIRVVGAETAFLIQALSTQLGYSLEDVHVIGHSLGAHTAAEAGRRLGGRVGRIT 177
Query: 131 GIDPARPLVDRYGDKAFRLTRDDANFVQVIHTN------AWFLGEAPQVGHVDFCVNGGR 184
G+DPA P ++ RL DA FV VIHT+ + G + +VGH+DF NGG+
Sbjct: 178 GLDPAGPCFQDEPEEV-RLDPSDAVFVDVIHTDSSPIVPSLGFGMSQKVGHLDFFPNGGK 236
Query: 185 MQPSCTK 191
P C K
Sbjct: 237 EMPGCKK 243
>pdb|1HPL|A Chain A, Horse Pancreatic Lipase. The Crystal Structure At 2.3
Angstroms Resolution
pdb|1HPL|B Chain B, Horse Pancreatic Lipase. The Crystal Structure At 2.3
Angstroms Resolution
Length = 449
Score = 70.9 bits (172), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 52/189 (27%), Positives = 84/189 (44%), Gaps = 9/189 (4%)
Query: 10 ILKSNSLKYAGWDPHKRNVIIIHGFNQSESQSPMTXXXXXXXXXXXXNVFMLDFADLAPF 69
+ ++++ + ++ ++ IIHGF +S ++ N +D+
Sbjct: 54 VADPSTIQSSNFNTGRKTRFIIHGFIDKGEESWLSTMCQNMFKVESVNCICVDWKS-GSR 112
Query: 70 PCYLSSLSNTRLVAQCAAQFYSHL-THHGASAYDIHCVGHSLGAHICGMMSNHLTHRMHK 128
Y + N R+V A L + S ++H +GHSLG+H G + +
Sbjct: 113 TAYSQASQNVRIVGAEVAYLVGVLQSSFDYSPSNVHIIGHSLGSHAAGEAGRRTNGAVGR 172
Query: 129 IIGIDPARPLVDRYGDKAFRLTRDDANFVQVIHTN-AWFL-----GEAPQVGHVDFCVNG 182
I G+DPA P + + RL DA FV VIHT+ A F+ G + GH+DF NG
Sbjct: 173 ITGLDPAEPCF-QGTPELVRLDPSDAQFVDVIHTDIAPFIPNLGFGMSQTAGHLDFFPNG 231
Query: 183 GRMQPSCTK 191
G+ P C K
Sbjct: 232 GKEMPGCQK 240
>pdb|4A5A|A Chain A, Crystal Structure Of The C258sC268S VARIANT OF TOXOPLASMA
GONDII Nucleoside Triphosphate Diphosphohydrolase 3
(Ntpdase3) In Complex With Magnesium And Amppnp
pdb|4A5A|B Chain B, Crystal Structure Of The C258sC268S VARIANT OF TOXOPLASMA
GONDII Nucleoside Triphosphate Diphosphohydrolase 3
(Ntpdase3) In Complex With Magnesium And Amppnp
pdb|4A5A|C Chain C, Crystal Structure Of The C258sC268S VARIANT OF TOXOPLASMA
GONDII Nucleoside Triphosphate Diphosphohydrolase 3
(Ntpdase3) In Complex With Magnesium And Amppnp
pdb|4A5A|D Chain D, Crystal Structure Of The C258sC268S VARIANT OF TOXOPLASMA
GONDII Nucleoside Triphosphate Diphosphohydrolase 3
(Ntpdase3) In Complex With Magnesium And Amppnp
Length = 611
Score = 30.8 bits (68), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 23/40 (57%), Gaps = 6/40 (15%)
Query: 120 NHLTHRMHKIIGIDPARPLVDRYGDKAFRLTRDDANFVQV 159
NHL+ R+ G DPAR ++D YG K R D A V+V
Sbjct: 221 NHLSRRL----GEDPARSMIDEYGVKQSR--NDLAGVVEV 254
>pdb|4A5B|A Chain A, Crystal Structure Of The C258sC268S VARIANT OF TOXOPLASMA
GONDII Nucleoside Triphosphate Diphosphohydrolase 1
(Ntpdase1)
pdb|4A5B|B Chain B, Crystal Structure Of The C258sC268S VARIANT OF TOXOPLASMA
GONDII Nucleoside Triphosphate Diphosphohydrolase 1
(Ntpdase1)
Length = 611
Score = 29.6 bits (65), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 23/40 (57%), Gaps = 6/40 (15%)
Query: 120 NHLTHRMHKIIGIDPARPLVDRYGDKAFRLTRDDANFVQV 159
NHL+ R+ G DPAR ++D YG K R D A V+V
Sbjct: 221 NHLSRRL----GEDPARSMIDEYGVKHSR--NDLAGVVEV 254
>pdb|4A6G|A Chain A, N-Acyl Amino Acid Racemase From Amycalotopsis Sp.
Ts-1-60: G291d-F323y Mutant In Complex With N-Acetyl
Methionine
pdb|4A6G|B Chain B, N-Acyl Amino Acid Racemase From Amycalotopsis Sp.
Ts-1-60: G291d-F323y Mutant In Complex With N-Acetyl
Methionine
pdb|4A6G|C Chain C, N-Acyl Amino Acid Racemase From Amycalotopsis Sp.
Ts-1-60: G291d-F323y Mutant In Complex With N-Acetyl
Methionine
pdb|4A6G|D Chain D, N-Acyl Amino Acid Racemase From Amycalotopsis Sp.
Ts-1-60: G291d-F323y Mutant In Complex With N-Acetyl
Methionine
Length = 368
Score = 29.6 bits (65), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 24/46 (52%), Gaps = 9/46 (19%)
Query: 132 IDPARPLVDRYGDKAFRLTRDDANFVQVIHTNAWFLGEAPQVGHVD 177
++P R + +R+GD +QV A+ LG+APQ+ +D
Sbjct: 170 VEPVRAVRERFGDDVL---------LQVDANTAYTLGDAPQLARLD 206
>pdb|1SJA|A Chain A, X-Ray Structure Of O-Succinylbenzoate Synthase Complexed
With N-Acetylmethionine
pdb|1SJA|B Chain B, X-Ray Structure Of O-Succinylbenzoate Synthase Complexed
With N-Acetylmethionine
pdb|1SJA|C Chain C, X-Ray Structure Of O-Succinylbenzoate Synthase Complexed
With N-Acetylmethionine
pdb|1SJA|D Chain D, X-Ray Structure Of O-Succinylbenzoate Synthase Complexed
With N-Acetylmethionine
pdb|1SJB|A Chain A, X-Ray Structure Of O-Succinylbenzoate Synthase Complexed
With O-Succinylbenzoic Acid
pdb|1SJB|B Chain B, X-Ray Structure Of O-Succinylbenzoate Synthase Complexed
With O-Succinylbenzoic Acid
pdb|1SJB|C Chain C, X-Ray Structure Of O-Succinylbenzoate Synthase Complexed
With O-Succinylbenzoic Acid
pdb|1SJB|D Chain D, X-Ray Structure Of O-Succinylbenzoate Synthase Complexed
With O-Succinylbenzoic Acid
pdb|1SJC|A Chain A, X-Ray Structure Of O-Succinylbenzoate Synthase Complexed
With N-Succinyl Methionine
pdb|1SJC|B Chain B, X-Ray Structure Of O-Succinylbenzoate Synthase Complexed
With N-Succinyl Methionine
pdb|1SJC|C Chain C, X-Ray Structure Of O-Succinylbenzoate Synthase Complexed
With N-Succinyl Methionine
pdb|1SJC|D Chain D, X-Ray Structure Of O-Succinylbenzoate Synthase Complexed
With N-Succinyl Methionine
pdb|1SJD|A Chain A, X-Ray Structure Of O-Succinylbenzoate Synthase Complexed
With N-Succinyl Phenylglycine
pdb|1SJD|B Chain B, X-Ray Structure Of O-Succinylbenzoate Synthase Complexed
With N-Succinyl Phenylglycine
pdb|1SJD|C Chain C, X-Ray Structure Of O-Succinylbenzoate Synthase Complexed
With N-Succinyl Phenylglycine
pdb|1SJD|D Chain D, X-Ray Structure Of O-Succinylbenzoate Synthase Complexed
With N-Succinyl Phenylglycine
Length = 368
Score = 29.6 bits (65), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 24/46 (52%), Gaps = 9/46 (19%)
Query: 132 IDPARPLVDRYGDKAFRLTRDDANFVQVIHTNAWFLGEAPQVGHVD 177
++P R + +R+GD +QV A+ LG+APQ+ +D
Sbjct: 170 VEPVRAVRERFGDDVL---------LQVDANTAYTLGDAPQLARLD 206
>pdb|4A57|A Chain A, Crystal Structure Of Toxoplasma Gondii Nucleoside
Triphosphate Diphosphohydrolase 3 (Ntpdase3)
pdb|4A57|B Chain B, Crystal Structure Of Toxoplasma Gondii Nucleoside
Triphosphate Diphosphohydrolase 3 (Ntpdase3)
pdb|4A57|C Chain C, Crystal Structure Of Toxoplasma Gondii Nucleoside
Triphosphate Diphosphohydrolase 3 (Ntpdase3)
pdb|4A57|D Chain D, Crystal Structure Of Toxoplasma Gondii Nucleoside
Triphosphate Diphosphohydrolase 3 (Ntpdase3)
pdb|4A59|A Chain A, Crystal Structure Of Toxoplasma Gondii Nucleoside
Triphosphate Diphosphohydrolase 3 (Ntpdase3) In Complex
With Amp
pdb|4A59|B Chain B, Crystal Structure Of Toxoplasma Gondii Nucleoside
Triphosphate Diphosphohydrolase 3 (Ntpdase3) In Complex
With Amp
pdb|4A59|C Chain C, Crystal Structure Of Toxoplasma Gondii Nucleoside
Triphosphate Diphosphohydrolase 3 (Ntpdase3) In Complex
With Amp
pdb|4A59|D Chain D, Crystal Structure Of Toxoplasma Gondii Nucleoside
Triphosphate Diphosphohydrolase 3 (Ntpdase3) In Complex
With Amp
Length = 611
Score = 29.6 bits (65), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 23/40 (57%), Gaps = 6/40 (15%)
Query: 120 NHLTHRMHKIIGIDPARPLVDRYGDKAFRLTRDDANFVQV 159
NHL+ R+ G DPAR ++D YG K R D A V+V
Sbjct: 221 NHLSRRL----GEDPARCMIDEYGVKQCR--NDLAGVVEV 254
>pdb|1YJ8|A Chain A, Initial Structural Analysis Of Plasmodium Falciparum
Glycerol-3- Phosphate Dehydrogenase
pdb|1YJ8|B Chain B, Initial Structural Analysis Of Plasmodium Falciparum
Glycerol-3- Phosphate Dehydrogenase
pdb|1YJ8|C Chain C, Initial Structural Analysis Of Plasmodium Falciparum
Glycerol-3- Phosphate Dehydrogenase
Length = 375
Score = 29.3 bits (64), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 18/74 (24%), Positives = 29/74 (39%), Gaps = 16/74 (21%)
Query: 64 ADLAPFPCYLSSLSNTRLVAQCAAQFYSHLTHHGASA--------------YDIHCVGHS 109
+D PC S+LS + A + +S T G + I+CV +
Sbjct: 159 SDFLNIPC--SALSGANIAMDVAMENFSEATIGGNDKDSLVIWQRVFDLPYFKINCVNET 216
Query: 110 LGAHICGMMSNHLT 123
+ ICG + N +T
Sbjct: 217 IEVEICGALKNIIT 230
>pdb|1N2F|A Chain A, Crystal Structure Of P. Aeruginosa Ohr
pdb|1N2F|B Chain B, Crystal Structure Of P. Aeruginosa Ohr
Length = 142
Score = 28.5 bits (62), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 18/36 (50%)
Query: 207 ACFFAATVSERGRRHQGHPCSLSCTGRLGPGTVSMG 242
ACF A G+R Q P S TG++G G + G
Sbjct: 59 ACFIGAMKFVAGQRKQTLPADASITGKVGIGQIPGG 94
>pdb|3QVM|A Chain A, The Structure Of Olei00960, A Hydrolase From Oleispira
Antarctica
pdb|3QVM|B Chain B, The Structure Of Olei00960, A Hydrolase From Oleispira
Antarctica
Length = 282
Score = 28.1 bits (61), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 25/52 (48%)
Query: 102 DIHCVGHSLGAHICGMMSNHLTHRMHKIIGIDPARPLVDRYGDKAFRLTRDD 153
++ +GHS+ + I G+ S H+ R+ I I P+ + D RDD
Sbjct: 99 NVSIIGHSVSSIIAGIASTHVGDRISDITXICPSPCFXNFPPDYVGGFERDD 150
>pdb|1M1J|A Chain A, Crystal Structure Of Native Chicken Fibrinogen With Two
Different Bound Ligands
pdb|1M1J|D Chain D, Crystal Structure Of Native Chicken Fibrinogen With Two
Different Bound Ligands
Length = 491
Score = 27.3 bits (59), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 16/34 (47%)
Query: 89 FYSHLTHHGASAYDIHCVGHSLGAHICGMMSNHL 122
S TH S H +G S +H+ G S+HL
Sbjct: 353 LESFFTHDSVSTSSRHSIGSSTSSHVTGAGSSHL 386
>pdb|1EI3|A Chain A, Crystal Structure Of Native Chicken Fibrinogen
pdb|1EI3|D Chain D, Crystal Structure Of Native Chicken Fibrinogen
Length = 491
Score = 26.9 bits (58), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 16/34 (47%)
Query: 89 FYSHLTHHGASAYDIHCVGHSLGAHICGMMSNHL 122
S TH S H +G S +H+ G S+HL
Sbjct: 353 LESFFTHDSVSTSSRHSIGSSTSSHVTGAGSSHL 386
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.325 0.137 0.448
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,168,074
Number of Sequences: 62578
Number of extensions: 261781
Number of successful extensions: 717
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 688
Number of HSP's gapped (non-prelim): 23
length of query: 247
length of database: 14,973,337
effective HSP length: 96
effective length of query: 151
effective length of database: 8,965,849
effective search space: 1353843199
effective search space used: 1353843199
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 50 (23.9 bits)