RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy16575
(247 letters)
>gnl|CDD|238363 cd00707, Pancreat_lipase_like, Pancreatic lipase-like enzymes.
Lipases are esterases that can hydrolyze long-chain
acyl-triglycerides into di- and monoglycerides,
glycerol, and free fatty acids at a water/lipid
interface. A typical feature of lipases is "interfacial
activation," the process of becoming active at the
lipid/water interface, although several examples of
lipases have been identified that do not undergo
interfacial activation . The active site of a lipase
contains a catalytic triad consisting of Ser - His -
Asp/Glu, but unlike most serine proteases, the active
site is buried inside the structure. A "lid" or "flap"
covers the active site, making it inaccessible to
solvent and substrates. The lid opens during the process
of interfacial activation, allowing the lipid substrate
access to the active site.
Length = 275
Score = 216 bits (552), Expect = 4e-70
Identities = 88/248 (35%), Positives = 125/248 (50%), Gaps = 12/248 (4%)
Query: 7 RINILKSNSLKYAGWDPHKRNVIIIHGFNQSESQSPMTIIRDAYIRRRDYNVFMLDFADL 66
+ +SLK + ++P + IIHG+ S +S ++ +R AY+ R DYNV ++D+
Sbjct: 18 LLFADDPSSLKNSNFNPSRPTRFIIHGWTSSGEESWISDLRKAYLSRGDYNVIVVDWGRG 77
Query: 67 APFPCYLSSLSNTRLVAQCAAQFYSHL-THHGASAYDIHCVGHSLGAHICGMMSNHLTHR 125
A P Y +++NTR+V A+F L + G S ++H +GHSLGAH+ G L +
Sbjct: 78 A-NPNYPQAVNNTRVVGAELAKFLDFLVDNTGLSLENVHLIGHSLGAHVAGFAGKRLNGK 136
Query: 126 MHKIIGIDPARPLVDRYGDKAFRLTRDDANFVQVIHTNAWFLGEAPQVGHVDFCVNGGRM 185
+ +I G+DPA PL D RL DA FV VIHT+ LG + +GH DF NGGR
Sbjct: 137 LGRITGLDPAGPLF-SGADPEDRLDPSDAQFVDVIHTDGGLLGFSQPIGHADFYPNGGRD 195
Query: 186 QPSCTKEGRMIRRARCSHFMGACFFAATVSERGRRHQGHPCSLS-------CTGRLGPGT 238
QP C K+ CSH +FA ++ +PCS C G G
Sbjct: 196 QPGCPKDILSSDFVACSHQRAVHYFAESILS-PCGFVAYPCSSYDEFLAGKCFPC-GSGC 253
Query: 239 VSMGEHTP 246
V MG H
Sbjct: 254 VRMGYHAD 261
>gnl|CDD|215752 pfam00151, Lipase, Lipase.
Length = 329
Score = 103 bits (259), Expect = 4e-26
Identities = 62/214 (28%), Positives = 99/214 (46%), Gaps = 15/214 (7%)
Query: 25 KRNVIIIHGFN-QSESQSPMTIIRDAYIRRRDYNVFMLDFADLAPFPCYLSSLSNTRLVA 83
K+ IIHGF + + +S ++ + + NV ++D+ + Y + N R+V
Sbjct: 71 KKTRAIIHGFTDKGQEESWLSDMCKNLFQVEGVNVIVVDWGSGST-TFYRQATLNVRVVG 129
Query: 84 QCAAQFYSHLTHH-GASAYDIHCVGHSLGAHICGMMSNHLT--HRMHKIIGIDPARPLVD 140
A+ L S ++H +GHSLGAH+ G ++ +I G+DPA P
Sbjct: 130 AEVAKLLVELEEELNVSPENVHLIGHSLGAHVAGEAGRRTKGKTKLGRITGLDPAGPYF- 188
Query: 141 RYGDKAFRLTRDDANFVQVIHTNAWF-----LGEAPQVGHVDFCVNGGRMQPSCTK-EGR 194
+ + RL DA+FV IHT+ +G + +VGHVDF NGG QP C
Sbjct: 189 KGTPELTRLDPGDADFVDAIHTDTRPIPGLGMGTSQRVGHVDFFPNGGSEQPGCQNNVLE 248
Query: 195 MIRRARCSHFMGACFFAATV-SERGRRHQGHPCS 227
+ C+H +FA ++ + R +PCS
Sbjct: 249 GTQFVACAHMRSVRYFAESLLNPRN--FPAYPCS 280
>gnl|CDD|132274 TIGR03230, lipo_lipase, lipoprotein lipase. Members of this
protein family are lipoprotein lipase (EC 3.1.1.34), a
eukaryotic triacylglycerol lipase active in plasma and
similar to pancreatic and hepatic triacylglycerol
lipases (EC 3.1.1.3). It is also called clearing factor.
It cleaves chylomicron and VLDL triacylglycerols; it
also has phospholipase A-1 activity.
Length = 442
Score = 97.3 bits (242), Expect = 3e-23
Identities = 65/210 (30%), Positives = 105/210 (50%), Gaps = 23/210 (10%)
Query: 14 NSLKYAGWDPHKRNVIIIHGFNQS---ESQSPMTIIRDAYIRRRDYNVFMLDFADLAPFP 70
+S+ ++ + I+IHG+ + ES P ++ Y R NV ++D+ A
Sbjct: 30 DSIADCNFNHETKTFIVIHGWTVTGMFESWVP-KLVAALYEREPSANVIVVDWLSRAQ-Q 87
Query: 71 CYLSSLSNTRLVAQCAAQFYSHLTHHGASAYD-IHCVGHSLGAHICGMMSNHLTHRMHKI 129
Y +S + T+LV + A+F + + +D +H +G+SLGAH+ G+ + H++++I
Sbjct: 88 HYPTSAAYTKLVGKDVAKFVNWMQEEFNYPWDNVHLLGYSLGAHVAGIAGSLTKHKVNRI 147
Query: 130 IGIDPARPLVDRYGDKAFRLTRDDANFVQVIHTNA-----WFLGEAPQVGHVDFCVNGGR 184
G+DPA P + Y D L+ DDA+FV V+HTN +G VGH+D NGG
Sbjct: 148 TGLDPAGPTFE-YADAPSTLSPDDADFVDVLHTNTRGSPDRSIGIQRPVGHIDIYPNGGT 206
Query: 185 MQPSC-----------TKEGRMIRRARCSH 203
QP C G M + +CSH
Sbjct: 207 FQPGCDIQETLLVIAEKGLGNMDQLVKCSH 236
>gnl|CDD|238382 cd00741, Lipase, Lipase. Lipases are esterases that can hydrolyze
long-chain acyl-triglycerides into di- and
monoglycerides, glycerol, and free fatty acids at a
water/lipid interface. A typical feature of lipases is
"interfacial activation", the process of becoming active
at the lipid/water interface, although several examples
of lipases have been identified that do not undergo
interfacial activation . The active site of a lipase
contains a catalytic triad consisting of Ser - His -
Asp/Glu, but unlike most serine proteases, the active
site is buried inside the structure. A "lid" or "flap"
covers the active site, making it inaccessible to
solvent and substrates. The lid opens during the process
of interfacial activation, allowing the lipid substrate
access to the active site.
Length = 153
Score = 73.3 bits (180), Expect = 3e-16
Identities = 33/118 (27%), Positives = 45/118 (38%), Gaps = 18/118 (15%)
Query: 101 YDIHCVGHSLGAHICGMMSNHL----THRMHKIIGIDPARPLVDRYGDKAF---RLTRDD 153
Y IH GHSLG + G+ L R+ ++ P R G+ AF RL D
Sbjct: 28 YKIHVTGHSLGGALAGLAGLDLRGRGLGRLVRVYTFGPPRV-----GNAAFAEDRLDPSD 82
Query: 154 ANFVQVIHTNAWFLGEAP------QVGHVDFCVNGGRMQPSCTKEGRMIRRARCSHFM 205
A FV I + + P G +F +NGG+ QP C K +
Sbjct: 83 ALFVDRIVNDNDIVPRLPPGGEGYPHGGAEFYINGGKSQPGCCKNVLEAVDIDFGNIG 140
>gnl|CDD|221720 pfam12697, Abhydrolase_6, Alpha/beta hydrolase family. This family
contains alpha/beta hydrolase enzymes of diverse
specificity.
Length = 187
Score = 37.8 bits (88), Expect = 0.002
Identities = 23/128 (17%), Positives = 39/128 (30%), Gaps = 15/128 (11%)
Query: 28 VIIIHGFNQSESQSPMTIIRDAYIRRRDYNVFMLDFADLAPFPCYLSS---LSNTRLVAQ 84
V+++HG S + +A Y V D P + S +
Sbjct: 1 VVLLHGAGGSAES--WRPLAEAL--AAGYRVLAPDL------PGHGDSDGPPRTPYSLED 50
Query: 85 CAAQFYSHLTHHGASAYDIHCVGHSLGAHICGMMSNHLTHRMHKIIGIDPARPLVDRYGD 144
AA + L G + VGHSLG + + R+ ++ I P ++
Sbjct: 51 DAADLAALLDALGLG--PVVLVGHSLGGAVALAAAARRPERVAGLVLISPPLRDLEELLA 108
Query: 145 KAFRLTRD 152
Sbjct: 109 ADAAALLA 116
>gnl|CDD|223669 COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta
hydrolase superfamily) [General function prediction
only].
Length = 282
Score = 35.0 bits (79), Expect = 0.028
Identities = 24/130 (18%), Positives = 40/130 (30%), Gaps = 13/130 (10%)
Query: 14 NSLKYAGWDPHKRNVIIIHGFNQSES--QSPMTIIRDAYIRRRDYNVFMLDFADLAPFPC 71
L Y ++++HGF S S + ++ R R DL
Sbjct: 10 VRLAYREAGGGGPPLVLLHGFPGSSSVWRPVFKVLPALAARYRVI------APDLRGHGR 63
Query: 72 YLSSLSNTRLVAQCAAQFYSHLTHHGASAYDIHCVGHSLGAHICGMMSNHLTHRMHKIIG 131
+ + A A L VGHS+G + ++ R+ ++
Sbjct: 64 SDPAGYSLSAYADDLAALLDALGLEKV-----VLVGHSMGGAVALALALRHPDRVRGLVL 118
Query: 132 IDPARPLVDR 141
I PA P
Sbjct: 119 IGPAPPPGLL 128
>gnl|CDD|224001 COG1075, LipA, Predicted acetyltransferases and hydrolases with the
alpha/beta hydrolase fold [General function prediction
only].
Length = 336
Score = 34.4 bits (79), Expect = 0.042
Identities = 15/88 (17%), Positives = 28/88 (31%), Gaps = 14/88 (15%)
Query: 28 VIIIHGFNQSESQ-SPMTIIRDAYIRRRDYNVFMLDFADLAPFPCY--LSSLSNTRLVAQ 84
++++HG P+ D + + + F + S Q
Sbjct: 62 IVLVHGLGGGYGNFLPL----DYRLAILGWL-----TNGVYAFELSGGDGTYSLAVRGEQ 112
Query: 85 CAAQFYSHLTHHGASAYDIHCVGHSLGA 112
A L GA ++ +GHS+G
Sbjct: 113 LFAYVDEVLAKTGAKKVNL--IGHSMGG 138
>gnl|CDD|223506 COG0429, COG0429, Predicted hydrolase of the alpha/beta-hydrolase
fold [General function prediction only].
Length = 345
Score = 31.2 bits (71), Expect = 0.43
Identities = 25/110 (22%), Positives = 42/110 (38%), Gaps = 24/110 (21%)
Query: 22 DPHKRNVIIIHGFN-QSESQSPMTIIRDAYIRRRDYNVFMLDF------ADLAPFPCYLS 74
K V++ HG S S ++R RR + V + F A+ +P Y S
Sbjct: 72 AAKKPLVVLFHGLEGSSNSPYARGLMRALS--RRGWLVVVFHFRGCSGEANTSPR-LYHS 128
Query: 75 SLSN--TRLVAQCAAQFYSHLTHHGASAYDIHCVGHSLGAHICGMMSNHL 122
+ + A+F ++ VG SLG + M++N+L
Sbjct: 129 GETEDIRFFLDWLKARFP---------PRPLYAVGFSLGGN---MLANYL 166
>gnl|CDD|227803 COG5516, COG5516, Conserved protein containing a Zn-ribbon-like
motif, possibly RNA-binding [General function prediction
only].
Length = 196
Score = 30.7 bits (69), Expect = 0.48
Identities = 22/92 (23%), Positives = 28/92 (30%), Gaps = 11/92 (11%)
Query: 138 LVDRYGDKAFRLTRDDANFVQVIHTNAWFLGEAPQVGHVDFCVNGGRMQPSCT----KEG 193
VDR R T + + +A L + C N P CT
Sbjct: 110 TVDRAPRLERRDTDSVEPLLAPLAESAAQLLADGDFQRLRICPN-----PGCTWLFVDRS 164
Query: 194 RMIRRARCSHFMGACFFAATVSERGRRHQGHP 225
R R CS M C + RR +GH
Sbjct: 165 RNRSRRWCS--MAVCGNRHKAARHYRRQRGHD 194
>gnl|CDD|221718 pfam12695, Abhydrolase_5, Alpha/beta hydrolase family. This family
contains a diverse range of alpha/beta hydrolase
enzymes.
Length = 145
Score = 29.3 bits (66), Expect = 1.1
Identities = 21/88 (23%), Positives = 33/88 (37%), Gaps = 19/88 (21%)
Query: 28 VIIIHGFNQS-ESQSPMTIIRDAYIRRRDYNVFMLDFADLAPFPCYLSSLSNTRLVAQCA 86
V+++HG E+ +P+ + R YNV +D+ P + +SL
Sbjct: 2 VVLLHGAGGDPEAYAPLA----RALASRGYNVVAVDY------PGHGASLGAPDA-EAVL 50
Query: 87 AQFYSHLTHHGASAYDIHCVGHSLGAHI 114
A I VGHSLG +
Sbjct: 51 ADAPLDPER-------IVLVGHSLGGGV 71
>gnl|CDD|223599 COG0525, ValS, Valyl-tRNA synthetase [Translation, ribosomal
structure and biogenesis].
Length = 877
Score = 29.9 bits (68), Expect = 1.4
Identities = 12/29 (41%), Positives = 16/29 (55%), Gaps = 3/29 (10%)
Query: 124 HRMHKIIG--IDPARPLVDRYGDKAFRLT 150
+M K G IDP ++D+YG A R T
Sbjct: 524 RKMSKSKGNVIDP-LDVIDKYGADALRFT 551
>gnl|CDD|129823 TIGR00740, TIGR00740, tRNA (cmo5U34)-methyltransferase. This tRNA
methyltransferase is involved, together with cmoB, in
preparing the uridine-5-oxyacetic acid (cmo5U) at
position 34 [Unknown function, Enzymes of unknown
specificity].
Length = 239
Score = 29.5 bits (66), Expect = 1.6
Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 8/61 (13%)
Query: 81 LVAQCAAQFYSHLTHHGASAYDIHCVGHSLGAHICGMMSNHLTHRMHKIIGIDPARPLVD 140
+ A +F + ++ YD+ C S GA N + KIIGID ++P+V+
Sbjct: 42 AIGMLAERFVTP----DSNVYDLGC---SRGAATLSARRN-INQPNVKIIGIDNSQPMVE 93
Query: 141 R 141
R
Sbjct: 94 R 94
>gnl|CDD|237028 PRK12267, PRK12267, methionyl-tRNA synthetase; Reviewed.
Length = 648
Score = 29.4 bits (67), Expect = 1.9
Identities = 17/40 (42%), Positives = 20/40 (50%), Gaps = 10/40 (25%)
Query: 126 MHKIIG--IDPARPLVDRYGDKAFR--LTRD-----DANF 156
M K G +DP LVDRYG A R L R+ D +F
Sbjct: 300 MSKSKGNVVDP-EELVDRYGLDALRYYLLREVPFGSDGDF 338
>gnl|CDD|197639 smart00303, GPS, G-protein-coupled receptor proteolytic site
domain. Present in latrophilin/CL-1, sea urchin REJ and
polycystin.
Length = 49
Score = 26.6 bits (59), Expect = 1.9
Identities = 7/33 (21%), Positives = 9/33 (27%), Gaps = 5/33 (15%)
Query: 71 CYLSSLSNTRLVAQCAAQFYSHLTHHGASAYDI 103
C L + T C +HLT
Sbjct: 20 CELLETNGTHTTCSC-----NHLTTFAVLMDVP 47
>gnl|CDD|178954 PRK00276, infA, translation initiation factor IF-1; Validated.
Length = 72
Score = 26.7 bits (60), Expect = 2.8
Identities = 9/23 (39%), Positives = 11/23 (47%), Gaps = 6/23 (26%)
Query: 107 GHSLGAHICGMMSNHLTHRMHKI 129
GH + AHI G M R + I
Sbjct: 29 GHEVLAHISGKM------RKNYI 45
>gnl|CDD|238287 cd00519, Lipase_3, Lipase (class 3). Lipases are esterases that
can hydrolyze long-chain acyl-triglycerides into di- and
monoglycerides, glycerol, and free fatty acids at a
water/lipid interface. A typical feature of lipases is
"interfacial activation," the process of becoming active
at the lipid/water interface, although several examples
of lipases have been identified that do not undergo
interfacial activation . The active site of a lipase
contains a catalytic triad consisting of Ser - His -
Asp/Glu, but unlike most serine proteases, the active
site is buried inside the structure. A "lid" or "flap"
covers the active site, making it inaccessible to
solvent and substrates. The lid opens during the process
of interfacial activation, allowing the lipid substrate
access to the active site. .
Length = 229
Score = 28.2 bits (63), Expect = 3.2
Identities = 7/12 (58%), Positives = 7/12 (58%)
Query: 101 YDIHCVGHSLGA 112
Y I GHSLG
Sbjct: 128 YKIIVTGHSLGG 139
>gnl|CDD|113116 pfam04333, VacJ, VacJ like lipoprotein. VacJ is required for the
intercellular spreading of Shigella flexneri. It is
attached to the outer membrane by a lipid anchor.
Length = 200
Score = 28.1 bits (63), Expect = 3.9
Identities = 9/20 (45%), Positives = 13/20 (65%)
Query: 39 SQSPMTIIRDAYIRRRDYNV 58
SQ P R AY++RR++ V
Sbjct: 180 SQDPYITTRSAYLQRREFKV 199
>gnl|CDD|224015 COG1090, COG1090, Predicted nucleoside-diphosphate sugar epimerase
[General function prediction only].
Length = 297
Score = 28.0 bits (63), Expect = 4.4
Identities = 14/68 (20%), Positives = 21/68 (30%), Gaps = 15/68 (22%)
Query: 116 GMMSNHLTHRMHKIIGIDPARPLVDRYGDKAFRLTRDDANFVQVIHTNAWFLGEAPQV-- 173
G++ LT R+ K G + LTR Q +H N
Sbjct: 8 GLIGRALTARLRK-------------GGHQVTILTRRPPKASQNLHPNVTLWEGLADALT 54
Query: 174 GHVDFCVN 181
+D +N
Sbjct: 55 LGIDAVIN 62
>gnl|CDD|218187 pfam04637, Herpes_pp85, Herpesvirus phosphoprotein 85 (HHV6-7
U14/HCMV UL25). This family includes UL25 proteins from
HCMV, as well as U14 proteins from HHV 6 and HHV7. These
85 kD phosphoproteins appear to act as structural
antigens, but their precise function is otherwise
unknown.
Length = 502
Score = 27.4 bits (61), Expect = 7.8
Identities = 9/39 (23%), Positives = 16/39 (41%), Gaps = 3/39 (7%)
Query: 178 FCVNGGRMQPSCTKEGRMIR---RARCSHFMGACFFAAT 213
F ++ G M +E R +R + + +FA T
Sbjct: 224 FLLSLGNMIYRHRRELRALRKWIVLQLNSLCEDLYFAYT 262
>gnl|CDD|225409 COG2853, VacJ, Surface lipoprotein [Cell envelope biogenesis, outer
membrane].
Length = 250
Score = 26.9 bits (60), Expect = 9.8
Identities = 9/23 (39%), Positives = 14/23 (60%)
Query: 36 QSESQSPMTIIRDAYIRRRDYNV 58
S P +RDAY++RR++ V
Sbjct: 205 LKNSPDPYIFVRDAYLQRRNFQV 227
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.326 0.138 0.450
Gapped
Lambda K H
0.267 0.0893 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 12,383,802
Number of extensions: 1129496
Number of successful extensions: 1243
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1230
Number of HSP's successfully gapped: 24
Length of query: 247
Length of database: 10,937,602
Length adjustment: 94
Effective length of query: 153
Effective length of database: 6,768,326
Effective search space: 1035553878
Effective search space used: 1035553878
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 58 (25.8 bits)