RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy16575
(247 letters)
>1hpl_A Lipase; hydrolase(carboxylic esterase); 2.30A {Equus caballus}
SCOP: b.12.1.2 c.69.1.19
Length = 449
Score = 196 bits (499), Expect = 1e-60
Identities = 59/258 (22%), Positives = 99/258 (38%), Gaps = 29/258 (11%)
Query: 14 NSLKYAGWDPHKRNVIIIHGFNQSESQSPMTIIRDAYIRRRDYNVFMLDFADLAPFPCYL 73
++++ + ++ ++ IIHGF +S ++ + + N +D+ + Y
Sbjct: 58 STIQSSNFNTGRKTRFIIHGFIDKGEESWLSTMCQNMFKVESVNCICVDWKSGS-RTAYS 116
Query: 74 SSLSNTRLVAQCAAQFYSHL-THHGASAYDIHCVGHSLGAHICGMMSNHLTHRMHKIIGI 132
+ N R+V A L + S ++H +GHSLG+H G + +I G+
Sbjct: 117 QASQNVRIVGAEVAYLVGVLQSSFDYSPSNVHIIGHSLGSHAAGEAGRRTNGAVGRITGL 176
Query: 133 DPARPLVDRYGDKAFRLTRDDANFVQVIHTNAWFL------GEAPQVGHVDFCVNGGRMQ 186
DPA P + + RL DA FV VIHT+ G + GH+DF NGG+
Sbjct: 177 DPAEPCF-QGTPELVRLDPSDAQFVDVIHTDIAPFIPNLGFGMSQTAGHLDFFPNGGKEM 235
Query: 187 PSCTK------------EGRMIRRARCSHFMGACFFAATVSERGRRHQGHPCS------- 227
P C K A C+H ++ ++ G C+
Sbjct: 236 PGCQKNVLSQIVDIDGIWQGTRDFAACNHLRSYKYYTDSILNPDGFA-GFSCASYSDFTA 294
Query: 228 LSCTGRLGPGTVSMGEHT 245
C G MG +
Sbjct: 295 NKCFPCSSEGCPQMGHYA 312
>1gpl_A RP2 lipase; serine esterase, hydrolase, lipid degradation,
pancreas, glycoprotein, chimeric; 2.01A {Cavia
porcellus} SCOP: b.12.1.2 c.69.1.19 PDB: 1lpb_B* 1lpa_B*
1n8s_A
Length = 432
Score = 193 bits (492), Expect = 9e-60
Identities = 64/252 (25%), Positives = 103/252 (40%), Gaps = 23/252 (9%)
Query: 8 INILKSNSLKYAGWDPHKRNVIIIHGFNQSESQSPMTIIRDAYIRRRDYNVFMLDFADLA 67
I ++K + ++ +++ IIHGF S S ++ + + N +D+ +
Sbjct: 53 ITATDIATIKASNFNLNRKTRFIIHGFTDSGENSWLSDMCKNMFQVEKVNCICVDWKGGS 112
Query: 68 PFPCYLSSLSNTRLVAQCAAQFYSHL-THHGASAYDIHCVGHSLGAHICGMMSNHLTHRM 126
Y + N R+V A L T + ++H +GHSLGAH G L +
Sbjct: 113 -KAQYSQASQNIRVVGAEVAYLVQVLSTSLNYAPENVHIIGHSLGAHTAGEAGKRLNGLV 171
Query: 127 HKIIGIDPARPLVDRYGDKAFRLTRDDANFVQVIHTNAWF------LGEAPQVGHVDFCV 180
+I G+DPA P + + RL DA FV VIHT+ G + +VGH+DF
Sbjct: 172 GRITGLDPAEPYF-QDTPEEVRLDPSDAKFVDVIHTDISPILPSLGFGMSQKVGHMDFFP 230
Query: 181 NGGRMQPSCTKEGRMIRRARCSHFMGACFFAATVSERGRRHQGHPCS-------LSCTGR 233
NGG+ P C C+H ++ +++ G+PC+ C
Sbjct: 231 NGGKDMPGCKTG------ISCNHHRSIEYYHSSILNP-EGFLGYPCASYDEFQESGCFPC 283
Query: 234 LGPGTVSMGEHT 245
G MG
Sbjct: 284 PAKGCPKMGHFA 295
>1bu8_A Protein (pancreatic lipase related protein 2); hydrolase, lipid
degradation; HET: NAG; 1.80A {Rattus norvegicus} SCOP:
b.12.1.2 c.69.1.19 PDB: 2oxe_A* 2pvs_A 1eth_A*
Length = 452
Score = 192 bits (490), Expect = 3e-59
Identities = 67/264 (25%), Positives = 109/264 (41%), Gaps = 29/264 (10%)
Query: 8 INILKSNSLKYAGWDPHKRNVIIIHGFNQSESQSPMTIIRDAYIRRRDYNVFMLDFADLA 67
I+ + +++K++ + ++ I+HGF + + + N +D+ +
Sbjct: 53 ISATEPDTIKFSNFQLDRKTRFIVHGFIDKGEDGWLLDMCKKMFQVEKVNCICVDWRRGS 112
Query: 68 PFPCYLSSLSNTRLVAQCAAQFYSHL-THHGASAYDIHCVGHSLGAHICGMMSNHLTHRM 126
Y + NTR+V A L T G S ++H +GHSLGAH+ G L +
Sbjct: 113 RTE-YTQASYNTRVVGAEIAFLVQVLSTEMGYSPENVHLIGHSLGAHVVGEAGRRLEGHV 171
Query: 127 HKIIGIDPARPLVDRYGDKAFRLTRDDANFVQVIHTNA------WFLGEAPQVGHVDFCV 180
+I G+DPA P + + RL DA FV VIHT++ G + +VGH+DF
Sbjct: 172 GRITGLDPAEPCF-QGLPEEVRLDPSDAMFVDVIHTDSAPIIPYLGFGMSQKVGHLDFFP 230
Query: 181 NGGRMQPSCTK------------EGRMIRRARCSHFMGACFFAATVSERGRRHQGHPCS- 227
NGG+ P C K C+H ++A+++ G+PCS
Sbjct: 231 NGGKEMPGCQKNILSTIVDINGIWEGTQNFVACNHLRSYKYYASSILNP-DGFLGYPCSS 289
Query: 228 ------LSCTGRLGPGTVSMGEHT 245
C G MG +
Sbjct: 290 YEKFQQNDCFPCPEEGCPKMGHYA 313
>1w52_X Pancreatic lipase related protein 2; detergent, cleaved flap; HET:
DDQ; 2.99A {Equus caballus}
Length = 452
Score = 187 bits (476), Expect = 4e-57
Identities = 62/264 (23%), Positives = 104/264 (39%), Gaps = 29/264 (10%)
Query: 8 INILKSNSLKYAGWDPHKRNVIIIHGFNQSESQSPMTIIRDAYIRRRDYNVFMLDFADLA 67
I ++K + + ++ +IHGF S + + ++ N +D++ A
Sbjct: 53 ITARDVATIKSSNFQSSRKTHFVIHGFRDRGEDSWPSDMCKKILQVETTNCISVDWSSGA 112
Query: 68 PFPCYLSSLSNTRLVAQCAAQFYSHLT-HHGASAYDIHCVGHSLGAHICGMMSNHLTHRM 126
Y ++ N R+V A L + ++H +GHSLGAH G L R+
Sbjct: 113 KAE-YTQAVQNIRIVGAETAYLIQQLLTELSYNPENVHIIGHSLGAHTAGEAGRRLEGRV 171
Query: 127 HKIIGIDPARPLVDRYGDKAFRLTRDDANFVQVIHTNA------WFLGEAPQVGHVDFCV 180
++ G+DPA P + + RL DA FV VIHT+A G + +VGH+DF
Sbjct: 172 GRVTGLDPAEPCF-QDASEEVRLDPSDAQFVDVIHTDASPMLPSLGFGMSQKVGHMDFFP 230
Query: 181 NGGRMQPSCTK------------EGRMIRRARCSHFMGACFFAATVSERGRRHQGHPCS- 227
NGG+ P C + C+H ++++++ +PC
Sbjct: 231 NGGKQMPGCKRSSFSTFIDINGIWQGAQDYLACNHLKSFEYYSSSILNPDGFL-AYPCDS 289
Query: 228 ------LSCTGRLGPGTVSMGEHT 245
C G MG +
Sbjct: 290 YDKFQENGCFPCPAGGCPKMGHYA 313
>1rp1_A Pancreatic lipase related protein 1; hydrolase, lipid degradation;
HET: NAG; 2.10A {Canis lupus familiaris} SCOP: b.12.1.2
c.69.1.19 PDB: 2ppl_A
Length = 450
Score = 186 bits (473), Expect = 9e-57
Identities = 60/266 (22%), Positives = 104/266 (39%), Gaps = 30/266 (11%)
Query: 7 RINILKSNSLKYAGWDPHKRNVIIIHGFNQSESQSPMTIIRDAYIRRRDYNVFMLDFADL 66
+ +++ + + K+ IIHGF ++ + + + + N +D+
Sbjct: 52 TLLPSDPSTIGASNFQTDKKTRFIIHGFIDKGEENWLLDMCKNMFKVEEVNCICVDWKKG 111
Query: 67 APFPCYLSSLSNTRLVAQCAAQFYSHL-THHGASAYDIHCVGHSLGAHICGMMSNHLTHR 125
+ Y + +N R+V AQ S L ++ S + +GHSLGAH+ G +
Sbjct: 112 S-QTSYTQAANNVRVVGAQVAQMLSMLSANYSYSPSQVQLIGHSLGAHVAGEAGSRT-PG 169
Query: 126 MHKIIGIDPARPLVDRYGDKAFRLTRDDANFVQVIHTNA------WFLGEAPQVGHVDFC 179
+ +I G+DP + + RL DA+FV VIHT+A G + Q+GH+DF
Sbjct: 170 LGRITGLDPVEASF-QGTPEEVRLDPTDADFVDVIHTDAAPLIPFLGFGTSQQMGHLDFF 228
Query: 180 VNGGRMQPSCTKEGR------------MIRRARCSHFMGACFFAATVSERGRRHQGHPCS 227
NGG P C K C+H +++ ++ +PC+
Sbjct: 229 PNGGEEMPGCKKNALSQIVDLDGIWEGTRDFVACNHLRSYKYYSESI-LNPDGFASYPCA 287
Query: 228 -------LSCTGRLGPGTVSMGEHTP 246
C G MG +
Sbjct: 288 SYRAFESNKCFPCPDQGCPQMGHYAD 313
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 44.3 bits (104), Expect = 3e-05
Identities = 38/212 (17%), Positives = 67/212 (31%), Gaps = 73/212 (34%)
Query: 21 WDPHKRNVIIIHGFNQSE--SQSPMTII------RDAYIRRRDYNVFMLD---------- 62
W+ + +GF+ + +P+ + + IR Y+ + +
Sbjct: 1646 WNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIREN-YSAMIFETIVDGKLKTE 1704
Query: 63 --FADLAPFPCYLSS---------LSNTRLVAQCA------AQFYSHLTHHGASAYDIHC 105
F ++ + +S LS T+ Q A A F L G D
Sbjct: 1705 KIFKEINE---HSTSYTFRSEKGLLSATQ-FTQPALTLMEKAAF-EDLKSKGLIPADATF 1759
Query: 106 VGHSLG-----AHICGMMSNHLTHRMHKIIGIDPARPLVDRYGDKAFRLTRDDANFVQVI 160
GHSLG A + +MS I+ +V +R +Q
Sbjct: 1760 AGHSLGEYAALASLADVMS------------IESLVEVV------FYR-----GMTMQ-- 1794
Query: 161 HTNAWFLGEAPQVGHVDFCVNGGRMQPSCTKE 192
A E + + +N GR+ S ++E
Sbjct: 1795 --VAVPRDELGRSNYGMIAINPGRVAASFSQE 1824
Score = 33.1 bits (75), Expect = 0.097
Identities = 40/228 (17%), Positives = 60/228 (26%), Gaps = 81/228 (35%)
Query: 41 SPMTIIRDAYIRRRDYNVFMLDFADLAPFPCYLS-SLSNTR--LV----AQCAAQFYSHL 93
SPM I + + + ++ P + SL N LV Q L
Sbjct: 336 SPMLSISN--LTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTL 393
Query: 94 THHGA-SAYDIHCVGHS------------LGA--HICGMMSNHLTHRMHKIIGIDPARPL 138
A S D + S + + H S+ L PA L
Sbjct: 394 RKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFH-----SHLLV----------PASDL 438
Query: 139 VDRYGDKAFRLTRDDANF------VQVIHTNAWFLGEAPQVGHVDFCVNGGRMQPSCTKE 192
+++ L +++ +F + V T D V G +
Sbjct: 439 INK------DLVKNNVSFNAKDIQIPVYDTFDG----------SDLRVLSGSISERIV-- 480
Query: 193 GRMIRRARCSHFMGACFFAATVSERGRRHQGHPCSLSCTGRLGPGTVS 240
I R + F AT H L GPG S
Sbjct: 481 -DCIIRLPV-KWETTTQFKAT----------H--ILDF----GPGGAS 510
>3pfb_A Cinnamoyl esterase; alpha/beta hydrolase fold, hydrolase,
cinnamoyl/Fe esterase, hydroxycinammates, extracellular;
HET: ZYC; 1.58A {Lactobacillus johnsonii} PDB: 3pf9_A*
3pfc_A* 3s2z_A* 3pf8_A 3qm1_A*
Length = 270
Score = 41.7 bits (98), Expect = 9e-05
Identities = 24/162 (14%), Positives = 53/162 (32%), Gaps = 22/162 (13%)
Query: 10 ILKSNSLKYAGW-----DPHKRNVIIIHGFNQSESQSPMTIIRDAYIRRRDYNVFMLDFA 64
L+ + L+ G II HGF + + S + I +R + DF
Sbjct: 26 TLERDGLQLVGTREEPFGEIYDMAIIFHGFTANRNTSLLREI-ANSLRDENIASVRFDFN 84
Query: 65 -------DLAPFPCYLSSLSNTRLVAQCAAQFYSHLTHHGASAYDIHCVGHSLGAHICGM 117
L+ + + + ++ +I+ VGH+ G + M
Sbjct: 85 GHGDSDGKFENM-TVLNEIEDANAILN-------YVKTDPHVR-NIYLVGHAQGGVVASM 135
Query: 118 MSNHLTHRMHKIIGIDPARPLVDRYGDKAFRLTRDDANFVQV 159
++ + K++ + PA L + + + + +
Sbjct: 136 LAGLYPDLIKKVVLLAPAATLKGDALEGNTQGVTYNPDHIPD 177
>1ys1_X Lipase; CIS peptide Leu 234, Ca2+ ION, inhibitor hexylphosphonic
acid (R) 2-methyl-3-phenylpropyl ester, hydrolase; HET:
2HR; 1.10A {Burkholderia cepacia} PDB: 1ys2_X* 4lip_D
1hqd_A 2lip_A 1oil_A* 3lip_A 2nw6_A 5lip_A* 1cvl_A
2es4_A 1tah_B 1qge_D 1qge_E
Length = 320
Score = 38.9 bits (90), Expect = 0.001
Identities = 18/117 (15%), Positives = 44/117 (37%), Gaps = 13/117 (11%)
Query: 20 GWDPHKRNVIIIHGFNQSESQSPMTI----IRDAYIRRRDYNVFMLDFADLAPFPCYLSS 75
+ + +I++HG ++ + + I++ +++R V++ + + S
Sbjct: 3 NYAATRYPIILVHGLTGTDKYAGVLEYWYGIQED-LQQRGATVYVANL------SGFQSD 55
Query: 76 LSNTRLVAQCAAQFYSHLTHHGASAYDIHCVGHSLGAHICGMMSNHLTHRMHKIIGI 132
Q A + L GA+ ++ VGHS G ++ + + I
Sbjct: 56 DGPNGRGEQLLAYVKTVLAATGATKVNL--VGHSQGGLTSRYVAAVAPDLVASVTTI 110
>1uxo_A YDEN protein; hydrolase, A/B hydrolase, esterase, PSI, protein
structure initiative, MCSG, midwest center for
structural genomics; 1.8A {Bacillus subtilis} SCOP:
c.69.1.31
Length = 192
Score = 37.8 bits (87), Expect = 0.001
Identities = 17/133 (12%), Positives = 32/133 (24%), Gaps = 16/133 (12%)
Query: 25 KRNVIIIHGFNQSESQSPMTIIRDAYIRRRDYNVFMLDFADLAPFPCYLSSLSNTRLVAQ 84
+ V IIHG+ S + ++ + +L+ + +
Sbjct: 4 TKQVYIIHGYRASSTNHWFPWLKK-RLLADGVQADILNMPN-----------PLQPRLED 51
Query: 85 CAAQFYSHLTHHGASAYDIHCVGHSLGAHICGMMSNHLTHRMHKIIGIDPARPLVDRYGD 144
+ + + V HSLG HL + GI
Sbjct: 52 WLDTLSLYQ---HTLHENTYLVAHSLGCPAILRFLEHL-QLRAALGGIILVSGFAKSLPT 107
Query: 145 KAFRLTRDDANFV 157
+F
Sbjct: 108 LQMLDEFTQGSFD 120
>2x5x_A PHB depolymerase PHAZ7; biopolymers, oxyanion HOLE, hydrolase,
biodegradation, catal; HET: PG4; 1.20A {Paucimonas
lemoignei} PDB: 2vtv_A* 2x76_A
Length = 342
Score = 38.4 bits (88), Expect = 0.001
Identities = 21/130 (16%), Positives = 38/130 (29%), Gaps = 18/130 (13%)
Query: 22 DPHKRNVIIIHGFNQSESQSPMTIIRDA-----------YIRRRDY---NVFMLDFADLA 67
K VI IHG + M + ++ R Y +F + + +
Sbjct: 37 TATKTPVIFIHGNGDNAISFDMPPGNVSGYGTPARSVYAELKARGYNDCEIFGVTYLSSS 96
Query: 68 PFPCYLSSLSNTRLVAQCAAQFYSHLTHHGASAYDIHCVGHSLGAHICGMMSNHL--THR 125
+ ++ A + G S DI V HS+G + +
Sbjct: 97 EQGSAQYNYHSSTKYAIIKTFIDKVKAYTGKSQVDI--VAHSMGVSMSLATLQYYNNWTS 154
Query: 126 MHKIIGIDPA 135
+ K I +
Sbjct: 155 VRKFINLAGG 164
>3l80_A Putative uncharacterized protein SMU.1393C; alpha/beta hydrolase
fold, carboxylesterase, Ser- hydrolase; 2.00A
{Streptococcus mutans}
Length = 292
Score = 37.3 bits (86), Expect = 0.003
Identities = 19/128 (14%), Positives = 35/128 (27%), Gaps = 15/128 (11%)
Query: 18 YAGWDPHKRNVIIIHGFNQSES-QSPMTIIRDAYIRRRDYNVFMLDFADLAPFPCY-LSS 75
Y + + G + + II + +D P S
Sbjct: 34 YTCHREGNPCFVFLSGAGFFSTADNFANIIDKL---PDSIGILTIDA------PNSGYSP 84
Query: 76 LSN--TRLVAQCAAQFYSHLTHHGASAYDIHCVGHSLGAHICGMMSNHLTHRMHKIIGID 133
+SN + H +Y HS+G + N + IG++
Sbjct: 85 VSNQANVGLRDWVNAILMIFEHFKFQSY--LLCVHSIGGFAALQIMNQSSKACLGFIGLE 142
Query: 134 PARPLVDR 141
P ++ R
Sbjct: 143 PTTVMIYR 150
>1isp_A Lipase; alpha/beta hydrolase fold, hydrolase; 1.30A {Bacillus
subtilis} SCOP: c.69.1.18 PDB: 1i6w_A 1r4z_A* 1r50_A*
2qxu_A 2qxt_A 1t4m_A 1t2n_A 3d2a_A 3qzu_A 3d2b_A 3d2c_A
3qmm_A
Length = 181
Score = 35.9 bits (83), Expect = 0.005
Identities = 17/114 (14%), Positives = 38/114 (33%), Gaps = 12/114 (10%)
Query: 24 HKRNVIIIHGFNQSESQSPMTIIRDAYIRRRDYNVFMLDFADLAPFPCYLSSLSNTRLVA 83
V+++HG + I+ +Y+ + ++ L D +N
Sbjct: 2 EHNPVVMVHGIGGASFN--FAGIK-SYLVSQGWSRDKLYAVDFWDKTG-----TNYNNGP 53
Query: 84 QCAAQFYSHLTHHGASAYDIHCVGHSLGAHICGMMSNHL--THRMHKIIGIDPA 135
+ L GA + V HS+G +L +++ ++ + A
Sbjct: 54 VLSRFVQKVLDETGAK--KVDIVAHSMGGANTLYYIKNLDGGNKVANVVTLGGA 105
>1r3d_A Conserved hypothetical protein VC1974; structural genomics,
hydrolase, NYSGXRC, NEW YORK SGX research center for
structural genomics, PSI; 1.90A {Vibrio cholerae} SCOP:
c.69.1.35
Length = 264
Score = 35.0 bits (81), Expect = 0.013
Identities = 26/151 (17%), Positives = 44/151 (29%), Gaps = 20/151 (13%)
Query: 11 LKSNSLKYAGWDPHKRNVIIIHGFNQSESQSPMTIIRDAYIRRRDYNVFMLDFADLAPFP 70
L SN L +A V+++HG S ++ ++ R LD
Sbjct: 2 LLSNQLHFAKPTARTPLVVLVHGLLGS-GADWQPVLS--HLARTQCAALTLD-------- 50
Query: 71 CYL-----SSLSNTRLVAQCAAQFYSHLTHHGASAYDIHCVGHSLGAHICGMMSNHLTHR 125
L + + A+ + H S + VG+SLG +
Sbjct: 51 --LPGHGTNPERHCDNFAEAVEMIEQTVQAHVTSEVPVILVGYSLGGRLIMHGLAQGAFS 108
Query: 126 MHKIIGID--PARPLVDRYGDKAFRLTRDDA 154
+ G + +KA R D
Sbjct: 109 RLNLRGAIIEGGHFGLQENEEKAARWQHDQQ 139
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 34.8 bits (79), Expect = 0.024
Identities = 36/221 (16%), Positives = 61/221 (27%), Gaps = 86/221 (38%)
Query: 8 INILKSNSLKYAGWDPHKRNVIIIHGFNQSESQSPMT------IIRDAYIRRRDYNVFML 61
+N L SL P K + I I I D Y + +
Sbjct: 408 VNKLHKYSL--VEKQP-KESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTF----- 459
Query: 62 DFADLAPFPC--YLSSLSNTRLVAQCAAQFYSHLTHHGASAYDIHCVGHSLGAHICGMMS 119
D DL P Y FYSH+ HH + +
Sbjct: 460 DSDDLIPPYLDQY----------------FYSHIGHH--------------------LKN 483
Query: 120 NHLTHRMH--------------KIIGIDPAR----PLVDRYGD-KAFR--LTRDDANFVQ 158
RM KI A +++ K ++ + +D + +
Sbjct: 484 IEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYER 543
Query: 159 VIHTNAWFLGEAPQVGHVDFCVNGGRMQPSCTKEGRMIRRA 199
+++ FL P++ + C+K ++R A
Sbjct: 544 LVNAILDFL---PKIEEN--LI--------CSKYTDLLRIA 571
>1tca_A Lipase; hydrolase(carboxylic esterase); HET: NAG; 1.55A {Candida
antarctica} SCOP: c.69.1.17 PDB: 1lbs_A* 1lbt_A* 1tcb_A*
1tcc_A*
Length = 317
Score = 34.4 bits (78), Expect = 0.028
Identities = 11/117 (9%), Positives = 35/117 (29%), Gaps = 15/117 (12%)
Query: 22 DPHKRNVIIIHGFNQSESQSPMTIIRDAYIRRRDYNVFMLDFADLAPFPCYLSSLSNTRL 81
+ ++++ G + QS + + Y + L++T++
Sbjct: 28 SSVSKPILLVPGTGTTGPQSFDSNWI-PLSTQLGYTPCWISPPP--------FMLNDTQV 78
Query: 82 VAQCAAQFYSHL-THHGASAYDIHCVGHSLGAHICGMMSNHL---THRMHKIIGIDP 134
+ + L G + + + S G + ++ +++ P
Sbjct: 79 NTEYMVNAITALYAGSGNNKLPV--LTWSQGGLVAQWGLTFFPSIRSKVDRLMAFAP 133
>3icv_A Lipase B, CALB; circular permutation, cleavage on PAIR of basic
residues, glycoprotein, hydrolase, lipid degradation,
zymogen, disulf; HET: NAG BTB; 1.49A {Candida
antarctica} PDB: 3icw_A*
Length = 316
Score = 33.6 bits (76), Expect = 0.050
Identities = 11/116 (9%), Positives = 31/116 (26%), Gaps = 13/116 (11%)
Query: 22 DPHKRNVIIIHGFNQSESQSPMTIIRDAYIRRRDYNVFMLDFADLAPFPCYLSSLSNTRL 81
+ ++++ G + QS + + Y + P + NT
Sbjct: 62 SSVSKPILLVPGTGTTGPQSFDSNWI-PLSAQLGYTPCWISP----PPFMLNDTQVNTEY 116
Query: 82 VAQCAAQFYSHLTHHGASAYDIHCVGHSLGAHICGMMSNHL---THRMHKIIGIDP 134
+ G + + + S G + ++ +++ P
Sbjct: 117 MVNAITTL---YAGSGNNKLPV--LTWSQGGLVAQWGLTFFPSIRSKVDRLMAFAP 167
>3qvm_A OLEI00960; structural genomics, PSI-biology, midwest center for
structu genomics, MCSG, alpha-beta hydrolase fold,
hydrolase; 2.00A {Oleispira antarctica}
Length = 282
Score = 33.0 bits (76), Expect = 0.060
Identities = 20/75 (26%), Positives = 34/75 (45%), Gaps = 3/75 (4%)
Query: 102 DIHCVGHSLGAHICGMMSNHLTHRMHKIIGIDPARPLVDRYGDKAFRLTRDDAN-FVQVI 160
++ +GHS+ + I G+ S H+ R+ I I P+ ++ D RDD + ++
Sbjct: 99 NVSIIGHSVSSIIAGIASTHVGDRISDITMICPSPCFMNFPPDYVGGFERDDLEELINLM 158
Query: 161 HTN--AWFLGEAPQV 173
N W AP V
Sbjct: 159 DKNYIGWANYLAPLV 173
>3o0d_A YALI0A20350P, triacylglycerol lipase; alpha/beta-hydrolase, lipids
binding, glycosylation, extracellular, hydrolase; HET:
NAG; 1.70A {Yarrowia lipolytica}
Length = 301
Score = 32.7 bits (74), Expect = 0.093
Identities = 27/141 (19%), Positives = 44/141 (31%), Gaps = 25/141 (17%)
Query: 18 YAGWDPHKRNVIIIH-GFNQSESQSPMTIIRDAYIRRRDYNVFMLDFADLAPFPC----- 71
Y D + + ++ G + S +I D I + F L + C
Sbjct: 71 YLAVDHASKQIYLVIRG-----THSLEDVITDIRIMQAPLTNFDLAANISSTATCDDCLV 125
Query: 72 ---YLSSLSNTRLVAQCAAQFYSHLTHHGA--SAYDIHCVGHSLGAHICGMMSNHLTHRM 126
++ S +NT Q L Y I GHSLG + +L
Sbjct: 126 HNGFIQSYNNTY------NQIGPKLDSVIEQYPDYQIAVTGHSLGGAAALLFGINLKVNG 179
Query: 127 HKIIGIDPARPLVDRYGDKAF 147
H + + +P G+ F
Sbjct: 180 HDPLVVTLGQP---IVGNAGF 197
>2pbl_A Putative esterase/lipase/thioesterase; alpha/beta-hydrolases fold,
structural genomics, joint cente structural genomics,
JCSG; 1.79A {Silicibacter SP} SCOP: c.69.1.2
Length = 262
Score = 32.2 bits (73), Expect = 0.11
Identities = 14/61 (22%), Positives = 22/61 (36%), Gaps = 9/61 (14%)
Query: 103 IHCVGHSLGAHICGMMSNHLTHRMHK---------IIGIDPARPLVDRYGDKAFRLTRDD 153
I GHS G H+ M + I + RPL+ ++ F++ D
Sbjct: 131 IVLAGHSAGGHLVARMLDPEVLPEAVGARIRNVVPISPLSDLRPLLRTSMNEKFKMDADA 190
Query: 154 A 154
A
Sbjct: 191 A 191
>2y6u_A Peroxisomal membrane protein LPX1; hydrolase, putative esterase,
putative lipase; HET: CME CSO; 1.90A {Saccharomyces
cerevisiae} PDB: 2y6v_A*
Length = 398
Score = 32.4 bits (73), Expect = 0.11
Identities = 22/144 (15%), Positives = 45/144 (31%), Gaps = 9/144 (6%)
Query: 1 EHGTKTRINILKSNSLKYAGWDPHKRNVIIIH--GFNQS--ESQSPMTIIRDAYIRRRDY 56
+ ++ S + + N++ +H G ++ E P + DA
Sbjct: 28 TDRLELTYDVYTSAERQRRSRTATRLNLVFLHGSGMSKVVWEYYLPRLVAADAEGNYAID 87
Query: 57 NVFMLDFAD----LAPFPCYLSSLSNTRLVAQCAAQFYSHLTHHGASAYD-IHCVGHSLG 111
V ++D + L + N A+ + + S +GHS+G
Sbjct: 88 KVLLIDQVNHGDSAVRNRGRLGTNFNWIDGARDVLKIATCELGSIDSHPALNVVIGHSMG 147
Query: 112 AHICGMMSNHLTHRMHKIIGIDPA 135
+ H +I I+P
Sbjct: 148 GFQALACDVLQPNLFHLLILIEPV 171
>1lgy_A Lipase, triacylglycerol lipase; hydrolase (carboxylic ester); 2.20A
{Rhizopus niveus} SCOP: c.69.1.17 PDB: 1tic_A
Length = 269
Score = 32.2 bits (73), Expect = 0.11
Identities = 14/70 (20%), Positives = 23/70 (32%), Gaps = 10/70 (14%)
Query: 101 YDIHCVGHSLGAHICGMMSNHLTHRMHKIIGIDP-----ARPLVDRYGDKAFR--LTRDD 153
Y + GHSLG + L R ++ + P R G+ F +
Sbjct: 137 YKVIVTGHSLGGAQALLAGMDLYQREPRLSPKNLSIFTVGGP---RVGNPTFAYYVESTG 193
Query: 154 ANFVQVIHTN 163
F + +H
Sbjct: 194 IPFQRTVHKR 203
>1tgl_A Triacyl-glycerol acylhydrolase; carboxylic esterase; 1.90A
{Rhizomucor miehei} SCOP: c.69.1.17 PDB: 4tgl_A 5tgl_A*
3tgl_A
Length = 269
Score = 32.2 bits (73), Expect = 0.12
Identities = 13/70 (18%), Positives = 25/70 (35%), Gaps = 10/70 (14%)
Query: 101 YDIHCVGHSLGAHICGMMSNHLTHRMHKIIGIDP-----ARPLVDRYGDKAFR--LTRDD 153
Y + GHSLG + + L R + + +P R G+ AF +
Sbjct: 136 YKVAVTGHSLGGATALLCALDLYQREEGLSSSNLFLYTQGQP---RVGNPAFANYVVSTG 192
Query: 154 ANFVQVIHTN 163
+ + ++
Sbjct: 193 IPYRRTVNER 202
>3dkr_A Esterase D; alpha beta hydrolase, mechanism, catalytic triad,
rotation; 1.60A {Lactobacillus rhamnosus} PDB: 3dlt_A
3dyi_A 3dyv_A 3e1g_A
Length = 251
Score = 31.8 bits (72), Expect = 0.15
Identities = 20/143 (13%), Positives = 42/143 (29%), Gaps = 9/143 (6%)
Query: 25 KRNVIIIHGFNQSESQSPMTIIRDAYIRRRDYNVFMLDFAD--LAPFPCYLSSLSNTRLV 82
V+++H + + S + M + ++R Y V++ F+ L+ +
Sbjct: 22 DTGVVLLHAY--TGSPNDMNFMAR-ALQRSGYGVYVPLFSGHGTVEPLDILTKGNPDIWW 78
Query: 83 AQCAAQFYSHLTHHGASAYDIHCVGHSLGAHICGMMSNHLTHRMHKIIGIDPARPLVDRY 142
A ++ +H+T A + G SLG L + P P
Sbjct: 79 A-ESSAAVAHMTAKYAK---VFVFGLSLGGIFAMKALETLPGITAGGVFSSPILPGKHHL 134
Query: 143 GDKAFRLTRDDANFVQVIHTNAW 165
+ +
Sbjct: 135 VPGFLKYAEYMNRLAGKSDESTQ 157
>2wtm_A EST1E; hydrolase; 1.60A {Clostridium proteoclasticum} PDB: 2wtn_A*
Length = 251
Score = 31.5 bits (72), Expect = 0.21
Identities = 19/115 (16%), Positives = 31/115 (26%), Gaps = 17/115 (14%)
Query: 28 VIIIHGFNQSESQSPMTIIRDAYIRRRDYNVFMLDFA-------DLAPFPCYLSSLSNTR 80
IIIHGF + + + + D L+N
Sbjct: 30 CIIIHGFTGHSEERHIVAV-QETLNEIGVATLRADMYGHGKSDGKFEDH-TLFKWLTNIL 87
Query: 81 LVAQCAAQFYSHLTHHGASAYDIHCVGHSLGAHICGMMSNHLTHRMHKIIGIDPA 135
V + DI+ GHS G + + + +I + PA
Sbjct: 88 AVVD-------YAKKLDFVT-DIYMAGHSQGGLSVMLAAAMERDIIKALIPLSPA 134
>2rau_A Putative esterase; NP_343859.1, putative lipase, structural
genomics, joint CEN structural genomics, JCSG; HET: PG4
UNL; 1.85A {Sulfolobus solfataricus P2}
Length = 354
Score = 31.5 bits (70), Expect = 0.22
Identities = 15/124 (12%), Positives = 35/124 (28%), Gaps = 10/124 (8%)
Query: 20 GWDPHKRNVIIIHGFNQSESQSPMTIIRDAYIRRRDYNVFMLDF-------ADLAPFPCY 72
G ++ I + Y+ R +NV+ +D+ +
Sbjct: 58 GTWSSGEQLVTISWNGVHYTIPDYRKSIVLYLARNGFNVYTIDYRTHYVPPFLKDRQLSF 117
Query: 73 LSSLSNTRLVAQCAAQFYSHLTHHGASAYDIHCVGHSLGAHICGM-MSNHLTHRMHKIIG 131
++ + ++ G I+ G S G S + + + +I
Sbjct: 118 TANWGWSTWISDIKEVVSFIKRDSGQE--RIYLAGESFGGIAALNYSSLYWKNDIKGLIL 175
Query: 132 IDPA 135
+D
Sbjct: 176 LDGG 179
>3ksr_A Putative serine hydrolase; catalytic triad, structural genomics,
JOIN for structural genomics, JCSG; 2.69A {Xanthomonas
campestris PV}
Length = 290
Score = 31.3 bits (71), Expect = 0.22
Identities = 19/125 (15%), Positives = 41/125 (32%), Gaps = 5/125 (4%)
Query: 28 VIIIHGFNQSESQSPMTIIRDAYIRRRDYNVFMLDFADLAPFPCYLSSLSNTRLVAQCAA 87
V+ +HG+ S+ S ++R D + S++ + + A
Sbjct: 31 VLFVHGWGGSQHHS---LVRAREAVGLGCICMTFDLRGHEGYASMRQSVTRAQNLDDIKA 87
Query: 88 QFYSHLTHHGASAYDIHCVGHSLGAHICGMMSNHLTHRMHKIIGIDPARPLVDRYGDKAF 147
+ + A+ I VG S G ++ +++ + + PA +
Sbjct: 88 AYDQLASLPYVDAHSIAVVGLSYGGYLSALLTRE--RPVEWLALRSPALYKDAHWDQPKV 145
Query: 148 RLTRD 152
L D
Sbjct: 146 SLNAD 150
>3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic
resistance, aminoglycoside, S-adenosyl-L-methionine;
HET: SAH; 1.69A {Streptomyces SP}
Length = 218
Score = 31.2 bits (70), Expect = 0.22
Identities = 7/53 (13%), Positives = 19/53 (35%), Gaps = 1/53 (1%)
Query: 129 IIGIDPARPLVDRYGDKAFR-LTRDDANFVQVIHTNAWFLGEAPQVGHVDFCV 180
++ +D + +++ KA + + + A L VG + +
Sbjct: 54 VVALDADKSRMEKISAKAAAKPAKGGLPNLLYLWATAERLPPLSGVGELHVLM 106
>3qit_A CURM TE, polyketide synthase; thioesterase, alpha/beta hydrolase,
decarboxylase, sulfate elimination, terminal alkene
production; 1.68A {Lyngbya majuscula 19L}
Length = 286
Score = 31.2 bits (71), Expect = 0.27
Identities = 10/61 (16%), Positives = 27/61 (44%)
Query: 106 VGHSLGAHICGMMSNHLTHRMHKIIGIDPARPLVDRYGDKAFRLTRDDANFVQVIHTNAW 165
VGHS+GA + +++ ++ ++I ++ P + + A +++ +
Sbjct: 100 VGHSMGAMLATAIASVRPKKIKELILVELPLPAEESKKESAVNQLTTCLDYLSSTPQHPI 159
Query: 166 F 166
F
Sbjct: 160 F 160
>1pja_A Palmitoyl-protein thioesterase 2 precursor; hydrolase,
glycoprotein, lysosome; HET: NAG; 2.70A {Homo sapiens}
SCOP: c.69.1.13
Length = 302
Score = 31.0 bits (69), Expect = 0.29
Identities = 21/113 (18%), Positives = 38/113 (33%), Gaps = 10/113 (8%)
Query: 23 PHKRNVIIIHGFNQSESQSPMTIIRDAYIRRRDYNVFMLDFADLAPFPCYLSSLSNTRLV 82
+ VI++HG S S S ++ V +LD D S L
Sbjct: 34 ASYKPVIVVHGLFDS-SYSFRHLLEYINETHPGTVVTVLDLFD--------GRESLRPLW 84
Query: 83 AQCAAQFYSHLTHHGASAYDIHCVGHSLGAHIC-GMMSNHLTHRMHKIIGIDP 134
Q + + + +H + +S G +C ++S H + I +
Sbjct: 85 EQVQGFREAVVPIMAKAPQGVHLICYSQGGLVCRALLSVMDDHNVDSFISLSS 137
>1tht_A Thioesterase; 2.10A {Vibrio harveyi} SCOP: c.69.1.13
Length = 305
Score = 30.4 bits (68), Expect = 0.44
Identities = 16/119 (13%), Positives = 36/119 (30%), Gaps = 23/119 (19%)
Query: 25 KRNVIIIHGFNQSESQSPMTIIRDAYIRRRDYNVFMLDFA--------DLAPFPCYLSSL 76
++I GF + + Y+ ++VF D + F ++
Sbjct: 35 NNTILIASGFARR-MDHFAGLAE--YLSTNGFHVFRYDSLHHVGLSSGSIDEF-----TM 86
Query: 77 SNTRLVAQCAAQFYSHLTHHGASAYDIHCVGHSLGAHICGMMSNHLTHRMHKIIGIDPA 135
+ + + L G +I + SL A + + + L + +I
Sbjct: 87 TTGKNSLCTVYHW---LQTKGTQ--NIGLIAASLSARVAYEVISDL--ELSFLITAVGV 138
>3uue_A LIP1, secretory lipase (family 3); LID-domain, hydrolase; HET: NAG
BMA MAN; 1.45A {Malassezia globosa} PDB: 3uuf_A*
Length = 279
Score = 30.3 bits (68), Expect = 0.49
Identities = 16/117 (13%), Positives = 33/117 (28%), Gaps = 21/117 (17%)
Query: 18 YAGWDPHKRNVIIIHGFNQSESQSPMTIIRDAYIRRRDYNVFMLDFADLAPFPC------ 71
P + I G + S + + DA + D N +
Sbjct: 60 NIYHSPSLGIAVAIEG---TNLFSLNSDLHDAKFWQEDPN------ERYIQYYPKGTKLM 110
Query: 72 --YLSSLSNTRLVAQCAAQFYSHLTHHGASAYDIHCVGHSLGAHICGMMSNHLTHRM 126
+ + ++ + + +GHSLGA + + + + RM
Sbjct: 111 HGFQQAYNDLM--DDIFTAVKKYKKEKNE--KRVTVIGHSLGAAMGLLCAMDIELRM 163
>2qo3_A Eryaii erythromycin polyketide synthase modules 3; ketosynthase,
acyltransferase, phosphopantetheine, transfera; 2.59A
{Saccharopolyspora erythraea}
Length = 915
Score = 30.3 bits (69), Expect = 0.58
Identities = 18/62 (29%), Positives = 20/62 (32%), Gaps = 9/62 (14%)
Query: 64 ADLAPFPCYLSSLSNTRLVAQCAAQFYSHLTHHGASAYDIHCVGHSLGAHICGMMSNHLT 123
D P P +S+ S L AQ AAQ L A VG L
Sbjct: 442 HDGRPVPLVVSARSTAALRAQ-AAQIAELLERPDADLAG---VGLGLATT-----RARHE 492
Query: 124 HR 125
HR
Sbjct: 493 HR 494
>3g7n_A Lipase; hydrolase fold, hydrolase; HET: 1PE; 1.30A {Penicillium
expansum}
Length = 258
Score = 29.8 bits (67), Expect = 0.76
Identities = 22/156 (14%), Positives = 45/156 (28%), Gaps = 26/156 (16%)
Query: 18 YAGWDPHKRNVIIIH-GFNQSESQSPMTIIRDAYIRRRDYNVFMLDFADLAPFPCY---- 72
+ G+ K+ + +I G S + + D I + + F P
Sbjct: 48 FVGYSTEKKTIAVIMRG-----STTITDFVNDIDIALITPELSGVTF----PSDVKIMRG 98
Query: 73 -LSSLSNTRLVAQCAAQFYSHLTHHGASAYDIHCVGHSLGAHICGMMSNHLTHRMHK--I 129
S + + + + Y + VGHSLG + + L +
Sbjct: 99 VHRPWSAVH--DTIITEVKALIAKYPD--YTLEAVGHSLGGALTSIAHVALAQNFPDKSL 154
Query: 130 IGIDPARPLVDRYGDKAFR--LTRDDANFVQVIHTN 163
+ G++A+ T F + +
Sbjct: 155 VSNALNAF---PIGNQAWADFGTAQAGTFNRGNNVL 187
>3ngm_A Extracellular lipase; secret lipase, hydrolase; 2.80A {Gibberella
zeae}
Length = 319
Score = 29.6 bits (66), Expect = 0.92
Identities = 11/65 (16%), Positives = 22/65 (33%), Gaps = 5/65 (7%)
Query: 101 YDIHCVGHSLGAHICGMMSNHLTHRMHKIIGIDPARPLVDRYGDKAFR--LTRDDANFVQ 158
+ + VGHSLG + + +L + P R G+ ++ +
Sbjct: 136 FKVVSVGHSLGGAVATLAGANLRIGGTPLDIYTYGSP---RVGNTQLAAFVSNQAGGEFR 192
Query: 159 VIHTN 163
V +
Sbjct: 193 VTNAK 197
>1tib_A Lipase; hydrolase(carboxylic esterase); 1.84A {Thermomyces
lanuginosus} SCOP: c.69.1.17 PDB: 1dt3_A 1dt5_A 1du4_A
1ein_A* 1dte_A 4dyh_A* 4ea6_A 1gt6_A*
Length = 269
Score = 29.5 bits (66), Expect = 0.93
Identities = 13/61 (21%), Positives = 20/61 (32%), Gaps = 3/61 (4%)
Query: 101 YDIHCVGHSLGAHICGMMSNHLTHRMHKIIGIDPARPLVDRYGDKAFRLTRDDANFVQVI 160
Y + GHSLG + + L + I P R G++AF +
Sbjct: 138 YRVVFTGHSLGGALATVAGADLRGNGYDIDVFSYGAP---RVGNRAFAEFLTVQTGGTLY 194
Query: 161 H 161
Sbjct: 195 R 195
>3bjr_A Putative carboxylesterase; structural genomics, joint center for
structural genomics, J protein structure initiative,
PSI-2; 2.09A {Lactobacillus plantarum WCFS1}
Length = 283
Score = 29.4 bits (66), Expect = 0.96
Identities = 11/58 (18%), Positives = 20/58 (34%), Gaps = 3/58 (5%)
Query: 83 AQCAAQF-YSHLTHHGASAYDIHCVGHSLGAHICGMMSNHLTHRMHKIIGIDP--ARP 137
A H I G S+G HI + +++ R+ + + P +P
Sbjct: 105 LGRAVNLLRQHAAEWHIDPQQITPAGFSVGGHIVALYNDYWATRVATELNVTPAMLKP 162
>1uwc_A Feruloyl esterase A; hydrolase, serine esterase, xylan degradation;
HET: NAG FER; 1.08A {Aspergillus niger} SCOP: c.69.1.17
PDB: 1uza_A* 2hl6_A* 2ix9_A* 1usw_A* 2bjh_A*
Length = 261
Score = 28.7 bits (64), Expect = 1.8
Identities = 13/48 (27%), Positives = 21/48 (43%), Gaps = 3/48 (6%)
Query: 101 YDIHCVGHSLGAHICGMMSNHLTHRMHKIIGIDPARPLVDRYGDKAFR 148
Y + GHSLGA + + + L+ + P R G++AF
Sbjct: 125 YALTVTGHSLGASMAALTAAQLSATYDNVRLYTFGEP---RSGNQAFA 169
>1imj_A CIB, CCG1-interacting factor B; alpha/beta hydrolase, CCG1
interactor; 2.20A {Homo sapiens} SCOP: c.69.1.23
Length = 210
Score = 28.4 bits (63), Expect = 1.9
Identities = 16/121 (13%), Positives = 35/121 (28%), Gaps = 15/121 (12%)
Query: 20 GWDPHKRNVIIIHGFNQSESQSPMTIIRDAYIRRRDYNVFMLDFA-----DLAPFPCYLS 74
G + +V+++HG S S++ + + + Y +D A P +
Sbjct: 27 GSGQARFSVLLLHGIRFS-SETWQNLGTLHRLAQAGYRAVAIDLPGLGHSKEAAAPAPIG 85
Query: 75 SLSNTRLVAQCAAQFYSHLTHHGASAYDIHCVGHSLGAHICGMMSNHLTHRMHKIIGIDP 134
L+ +A L + SL ++ + + P
Sbjct: 86 ELAPGSFLAA----VVDALELGPP-----VVISPSLSGMYSLPFLTAPGSQLPGFVPVAP 136
Query: 135 A 135
Sbjct: 137 I 137
>1y93_A Macrophage metalloelastase; matrix metalloproteinase, MMP12,
complex (elastase inhibitor), acetohydroxamic acid,
hydrola; 1.03A {Homo sapiens} SCOP: d.92.1.11 PDB:
1rmz_A 1ycm_A* 1z3j_A* 2hu6_A* 2oxu_A 2oxw_A 2oxz_A
3lik_A* 3lil_A* 3lir_A* 3ljg_A* 1os9_A 1os2_A 3f17_A*
3ehy_A* 3ehx_A* 3f15_A* 3f16_A* 3f18_A* 3f19_A* ...
Length = 159
Score = 27.8 bits (61), Expect = 2.3
Identities = 24/128 (18%), Positives = 38/128 (29%), Gaps = 16/128 (12%)
Query: 34 FNQSESQSPMTIIRDAYIRRRDYNVFMLDFADLAPFPCYLSSLSNTRLVAQCAAQFYSHL 93
F++ + ++ A D + F LA S + +H
Sbjct: 45 FSKINTGMADILVVFARGAHGDDHAFDGKGGILAH-AFGPGSGIGGDAHFDEDEFWTTHS 103
Query: 94 THHGASAYDIHCVGHSLG-AHICGMMSNHLTHRMHKIIGIDPARPLVDRYGDKAFRLTRD 152
+H +GHSLG H S+ M P FRL+ D
Sbjct: 104 GGTNLFLTAVHEIGHSLGLGH-----SSDPKAVMF---------PTYKYVDINTFRLSAD 149
Query: 153 DANFVQVI 160
D +Q +
Sbjct: 150 DIRGIQSL 157
>3fob_A Bromoperoxidase; structural genomics, IDP00046, bacillus ANT
peroxidase, oxidoreductase; 1.74A {Bacillus anthracis
str}
Length = 281
Score = 28.1 bits (63), Expect = 2.6
Identities = 9/38 (23%), Positives = 17/38 (44%), Gaps = 1/38 (2%)
Query: 102 DIHCVGHSLGAHICGM-MSNHLTHRMHKIIGIDPARPL 138
++ VG S+G +S + T R+ K++ P
Sbjct: 95 NVTLVGFSMGGGEVARYISTYGTDRIEKVVFAGAVPPY 132
>1tqh_A Carboxylesterase precursor; tetrahedral intermediate, alpha/beta
hydrolase; 1.63A {Geobacillus stearothermophilus} SCOP:
c.69.1.29 PDB: 1r1d_A* 4diu_A
Length = 247
Score = 28.2 bits (63), Expect = 2.6
Identities = 17/95 (17%), Positives = 29/95 (30%), Gaps = 16/95 (16%)
Query: 25 KRNVIIIHGFNQSESQSPMTIIRDAYIRRRDYNVFMLDFADLAPFPCYLSSLSNTRLV-- 82
+R V+++HGF + S + R ++ + Y + +
Sbjct: 16 ERAVLLLHGFTGN-SADVRMLGR--FLESKGYTCHAPI------YKGHGVPPEELVHTGP 66
Query: 83 ---AQCAAQFYSHLTHHGASAYDIHCVGHSLGAHI 114
Q Y L + G I G SLG
Sbjct: 67 DDWWQDVMNGYEFLKNKGYE--KIAVAGLSLGGVF 99
>2qs9_A Retinoblastoma-binding protein 9; B5T overexpressed gene protein,
BOG, RBBP9, RBBP10, HR2978, NESG, structural genomics,
PSI-2; 1.72A {Homo sapiens}
Length = 194
Score = 27.8 bits (61), Expect = 2.6
Identities = 8/92 (8%), Positives = 21/92 (22%), Gaps = 19/92 (20%)
Query: 27 NVIIIH--GFNQSESQSPMTIIRDAYIRRRDYNVFMLDFAD-LAPFPCYLSSLSNTRLVA 83
+I+ G + ++ + + + D +
Sbjct: 6 KAVIVPGNGGGDVTTHGWYGWVKKELEKIPGFQCLAKNMPDPITARE------------- 52
Query: 84 QCAAQFYSHLTHHGASAYDIHCVGHSLGAHIC 115
+ + + +GHS GA
Sbjct: 53 ---SIWLPFMETELHCDEKTIIIGHSSGAIAA 81
>1a8q_A Bromoperoxidase A1; haloperoxidase, oxidoreductase; 1.75A
{Streptomyces aureofaciens} SCOP: c.69.1.12
Length = 274
Score = 28.1 bits (63), Expect = 2.8
Identities = 9/41 (21%), Positives = 18/41 (43%), Gaps = 1/41 (2%)
Query: 102 DIHCVGHSLGAHICGM-MSNHLTHRMHKIIGIDPARPLVDR 141
D+ V HS+G + H T R+ + + P++ +
Sbjct: 87 DVTLVAHSMGGGELARYVGRHGTGRLRSAVLLSAIPPVMIK 127
>1z3i_X Similar to RAD54-like; recombination ATPase helicase,
recombination-DNA binding COM; 3.00A {Danio rerio} SCOP:
c.37.1.19 c.37.1.19
Length = 644
Score = 28.0 bits (63), Expect = 3.2
Identities = 9/58 (15%), Positives = 15/58 (25%), Gaps = 7/58 (12%)
Query: 21 WDPHKRNVIIIHGFNQSESQSPMTIIRDAYIRRRDYNV-------FMLDFADLAPFPC 71
W + + I G ++ E S + R + F L L
Sbjct: 136 WLGGRVQPVAIDGGSKDEIDSKLVNFISQQGMRIPTPILIISYETFRLHAEVLHKGKV 193
>1wom_A RSBQ, sigma factor SIGB regulation protein RSBQ; alpha/beta
hydrolase, signaling protein; 2.50A {Bacillus subtilis}
PDB: 1wpr_A*
Length = 271
Score = 27.6 bits (62), Expect = 3.4
Identities = 13/75 (17%), Positives = 28/75 (37%), Gaps = 3/75 (4%)
Query: 102 DIHCVGHSLGAHICGMMSNHLTHRMHKIIGIDPARPLVDRYGDKAFRLTRDDAN-FVQVI 160
+ VGHS+GA I + S ++ + P+ ++ + + ++++
Sbjct: 91 ETVFVGHSVGALIGMLASIRRPELFSHLVMVGPSPCYLNDPPEYYGGFEEEQLLGLLEMM 150
Query: 161 HTN--AWFLGEAPQV 173
N W A V
Sbjct: 151 EKNYIGWATVFAATV 165
>1zc6_A Probable N-acetylglucosamine kinase; NESG, Q7NU07_chrvo, CVR23,
struc genomics, PSI, protein structure initiative; 2.20A
{Chromobacterium violaceum} SCOP: c.55.1.5 c.55.1.5
Length = 305
Score = 27.9 bits (62), Expect = 3.5
Identities = 17/147 (11%), Positives = 32/147 (21%), Gaps = 20/147 (13%)
Query: 98 ASAYDI--HCVGHSLGAHICGMMSNHLTHRMHKIIGIDPARPLVDRYGDK---------- 145
AS + + A + LT + +G D +
Sbjct: 158 ASGAWLGQRAAQLTQMALDGRHSHSPLTRAVLDFVGGDWQAMMAWNGRATPAQFARLAPL 217
Query: 146 AFRLTRDDANFVQVIHTNAWFLGEA----PQVGHVDFCVNGG---RMQPSCTKE-GRMIR 197
R D ++ + + GG ++ + +
Sbjct: 218 VLSAARVDPEADALLRQAGEDAWAIARALDPQDELPVALCGGLGQALRDWLPPGFRQRLV 277
Query: 198 RARCSHFMGACFFAATVSERGRRHQGH 224
+ GA S R H H
Sbjct: 278 APQGDSAQGALLLLQRPSTRLEHHHHH 304
>3rm3_A MGLP, thermostable monoacylglycerol lipase; alpha/beta hydrolase
fold, hydrolase; 1.20A {Bacillus SP}
Length = 270
Score = 27.5 bits (61), Expect = 3.7
Identities = 22/130 (16%), Positives = 40/130 (30%), Gaps = 21/130 (16%)
Query: 25 KRNVIIIHGFNQSESQSPMTIIRDAYIRRRDYNVFMLDFADLAPFPCYLSSLSNTRLV-- 82
V+++HGF + + M + + + Y V + + + +
Sbjct: 40 PVGVLLVHGF--TGTPHSMRPLAE-AYAKAGYTVCLPR------LKGHGTHYEDMERTTF 90
Query: 83 ---AQCAAQFYSHLTHHGASAYDIHCVGHSLGAHICGMMSNHLTHRMHKIIGIDPARPLV 139
+ Y L + I G S+G G ++ +L I GI P V
Sbjct: 91 HDWVASVEEGYGWLKQRCQT---IFVTGLSMG----GTLTLYLAEHHPDICGIVPINAAV 143
Query: 140 DRYGDKAFRL 149
D A
Sbjct: 144 DIPAIAAGMT 153
>1j1i_A META cleavage compound hydrolase; carbazole degradation, META
cleavage product hydrolase, histidine tagged protein,
alpha/beta-hydrolase; 1.86A {Janthinobacterium} SCOP:
c.69.1.10
Length = 296
Score = 27.7 bits (62), Expect = 3.8
Identities = 6/33 (18%), Positives = 16/33 (48%)
Query: 103 IHCVGHSLGAHICGMMSNHLTHRMHKIIGIDPA 135
+ VG+S+G +S + ++ ++ + A
Sbjct: 108 VSIVGNSMGGATGLGVSVLHSELVNALVLMGSA 140
>2iew_A Inositol polyphosphate multikinase; ATP-grAsp fold related,
transferase; 2.00A {Saccharomyces cerevisiae} PDB:
2if8_A*
Length = 363
Score = 27.6 bits (60), Expect = 3.8
Identities = 13/57 (22%), Positives = 20/57 (35%), Gaps = 2/57 (3%)
Query: 108 HSLGAHICGMMSNHLTHRMHKIIGIDPARPLVDRYG--DKAFRLTRDDANFVQVIHT 162
SLG ICGM ++++ Y +K + +R D N I
Sbjct: 161 GSLGFRICGMKIQKNPSVLNQLSLEYYEEEADSDYIFINKLYGRSRTDQNVSDAIEL 217
>1brt_A Bromoperoxidase A2; haloperoxidase, oxidoreductase, alpha/beta
hydrolase fold, mutant M99T; 1.50A {Streptomyces
aureofaciens} SCOP: c.69.1.12 PDB: 1bro_A 1a8u_A 1a7u_A
Length = 277
Score = 27.6 bits (62), Expect = 3.9
Identities = 10/41 (24%), Positives = 18/41 (43%), Gaps = 1/41 (2%)
Query: 102 DIHCVGHSLGAHICGM-MSNHLTHRMHKIIGIDPARPLVDR 141
D VG S G +S++ T R+ K+ + P + +
Sbjct: 91 DAVLVGFSTGTGEVARYVSSYGTARIAKVAFLASLEPFLLK 131
>1tia_A Lipase; hydrolase(carboxylic esterase); 2.10A {Penicillium
camemberti} SCOP: c.69.1.17
Length = 279
Score = 27.5 bits (61), Expect = 4.0
Identities = 13/52 (25%), Positives = 22/52 (42%), Gaps = 10/52 (19%)
Query: 101 YDIHCVGHSLGAHICGMMSNHLTHRMHKIIGI----DPARPLVDRYGDKAFR 148
Y++ VGHSLGA + + + L + + + P R G+ A
Sbjct: 137 YELVVVGHSLGAAVATLAATDLRGKGYPSAKLYAYASP------RVGNAALA 182
>1zoi_A Esterase; alpha/beta hydrolase fold; 1.60A {Pseudomonas putida}
PDB: 4dgq_A
Length = 276
Score = 27.2 bits (61), Expect = 4.2
Identities = 12/55 (21%), Positives = 20/55 (36%), Gaps = 1/55 (1%)
Query: 102 DIHCVGHSLGAHICG-MMSNHLTHRMHKIIGIDPARPLVDRYGDKAFRLTRDDAN 155
VGHS G M+ H ++ K + I PL+ + L + +
Sbjct: 90 GAVHVGHSTGGGEVVRYMARHPEDKVAKAVLIAAVPPLMVQTPGNPGGLPKSVFD 144
>1xkl_A SABP2, salicylic acid-binding protein 2; alpha-beta protein,
structural genomics, protein structure initiative, PSI;
HET: STH; 2.00A {Nicotiana tabacum} SCOP: c.69.1.20 PDB:
1y7i_A* 1y7h_A*
Length = 273
Score = 27.2 bits (60), Expect = 4.5
Identities = 16/114 (14%), Positives = 34/114 (29%), Gaps = 9/114 (7%)
Query: 25 KRNVIIIHGFNQSESQ-SPMTIIRDAYIRRRDYNVFMLDFADLAPFPCYLSSLSNTRLVA 83
++ +++HG + + + V LD A + L
Sbjct: 4 GKHFVLVHGACHGGWSWYKLK----PLLEAAGHKVTALDLAASGTDLRKIEELRTLYDYT 59
Query: 84 QCAAQFYSHLTHHGASAYDIHCVGHSLGAHICGMMSNHLTHRMHKIIGIDPARP 137
+ L+ + VGHSLG G+ +++ + + P
Sbjct: 60 LPLMELMESLSADE----KVILVGHSLGGMNLGLAMEKYPQKIYAAVFLAAFMP 109
>3c6x_A Hydroxynitrilase; atomic resolution, hydroxynitril lyase,
catalysis, protonation state, AB initio calculations,
substrate bindin; 1.05A {Hevea brasiliensis} SCOP:
c.69.1.20 PDB: 1sc9_A 1yas_A* 2g4l_A* 2yas_A 1qj4_A
3c6y_A 3c6z_A 3c70_A 3yas_A 4yas_A 5yas_A* 6yas_A
7yas_A* 1yb6_A* 1yb7_A 1sck_A 1sci_A 1scq_A 1dwo_A
1dwp_A ...
Length = 257
Score = 27.3 bits (60), Expect = 5.0
Identities = 14/113 (12%), Positives = 32/113 (28%), Gaps = 7/113 (6%)
Query: 25 KRNVIIIHGFNQSESQSPMTIIRDAYIRRRDYNVFMLDFADLAPFPCYLSSLSNTRLVAQ 84
+ ++IH + + V LD A P + + + ++
Sbjct: 3 FAHFVLIHTICHGAWIWHKLK---PLLEALGHKVTALDLAASGVDPRQIEEIGSFDEYSE 59
Query: 85 CAAQFYSHLTHHGASAYDIHCVGHSLGAHICGMMSNHLTHRMHKIIGIDPARP 137
F L + VG S G + ++ ++ + + P
Sbjct: 60 PLLTFLEALPPGE----KVILVGESCGGLNIAIAADKYCEKIAAAVFHNSVLP 108
>2yij_A Phospholipase A1-iigamma; hydrolase; 2.00A {Arabidopsis thaliana}
Length = 419
Score = 27.4 bits (60), Expect = 5.6
Identities = 15/78 (19%), Positives = 25/78 (32%), Gaps = 8/78 (10%)
Query: 79 TRLVAQCAAQFYSHLTHHGASAYDIHCVGHSLGAHICGMMSNHL-THRMHKIIGIDPARP 137
T Q + L + I GHSLGA + + + + + ++
Sbjct: 206 TNARDQVLREVGRLLEKYKDEEVSITICGHSLGAALATLSATDIVANGYNRPKSRPDKSC 265
Query: 138 LVDRY-------GDKAFR 148
V + GD FR
Sbjct: 266 PVTAFVFASPRVGDSDFR 283
>3bf7_A Esterase YBFF; thioesterase, helical CAP, hydrolase; 1.10A
{Escherichia coli} PDB: 3bf8_A
Length = 255
Score = 27.0 bits (60), Expect = 5.9
Identities = 21/123 (17%), Positives = 39/123 (31%), Gaps = 21/123 (17%)
Query: 18 YAGWDPHKRNVIIIHGFNQSESQSPMTIIRDAYIRRRDYNVFMLDFADLAPFPCYL---- 73
A + ++++HG S + + RD D+N+ +D +
Sbjct: 9 TAQNQHNNSPIVLVHGLFGS-LDNLGVLARDL---VNDHNIIQVD----------VRNHG 54
Query: 74 -SSLSNTRLVAQCAAQFYSHLTHHGASAYDIHCVGHSLGAHICGMMSNHLTHRMHKIIGI 132
S A L +GHS+G ++ R+ K++ I
Sbjct: 55 LSPREPVMNYPAMAQDLVDTLDALQID--KATFIGHSMGGKAVMALTALAPDRIDKLVAI 112
Query: 133 DPA 135
D A
Sbjct: 113 DIA 115
>1a8s_A Chloroperoxidase F; haloperoxidase, oxidoreductase, propionate
complex; 1.80A {Pseudomonas fluorescens} SCOP: c.69.1.12
Length = 273
Score = 26.9 bits (60), Expect = 6.1
Identities = 12/55 (21%), Positives = 18/55 (32%), Gaps = 1/55 (1%)
Query: 102 DIHCVGHSLGAHICG-MMSNHLTHRMHKIIGIDPARPLVDRYGDKAFRLTRDDAN 155
D G S G + H T R+ K I PL+ + L + +
Sbjct: 87 DAVLFGFSTGGGEVARYIGRHGTARVAKAGLISAVPPLMLKTEANPGGLPMEVFD 141
>3k2i_A Acyl-coenzyme A thioesterase 4; alpha/beta hydrolase fold
seven-stranded beta-sandwich, structural genomics,
structural genomics consortium, SGC; 2.40A {Homo
sapiens}
Length = 422
Score = 27.1 bits (59), Expect = 6.6
Identities = 20/95 (21%), Positives = 34/95 (35%), Gaps = 9/95 (9%)
Query: 28 VIIIHGFNQSESQSPMTIIRDAYIRRRDYNVFMLDFADLAPFPCYLSSLSNTRLVAQCAA 87
+I I G + R + + + L + + P + ++S A
Sbjct: 161 IIDIFGIGGGLLEY-----RASLLAGHGFATLALAYYNFEDLPNNMDNISLEYFEE--AV 213
Query: 88 QFYSHLTHHGASAYDIHCVGHSLGAHICGMMSNHL 122
+ L H I +G SLGA IC M++ L
Sbjct: 214 CYM--LQHPQVKGPGIGLLGISLGADICLSMASFL 246
>1v2d_A Glutamine aminotransferase; PLP, riken structural
genomics/proteomics initi RSGI, structural genomics;
HET: PLP; 1.90A {Thermus thermophilus} SCOP: c.67.1.1
PDB: 1v2e_A* 1v2f_A*
Length = 381
Score = 26.8 bits (60), Expect = 8.1
Identities = 8/42 (19%), Positives = 14/42 (33%)
Query: 30 IIHGFNQSESQSPMTIIRDAYIRRRDYNVFMLDFADLAPFPC 71
+ + + +R+ Y RRRD L L +
Sbjct: 263 VAEALKLARREGFYEALREGYRRRRDLLAGGLRAMGLRVYVP 304
>1hkh_A Gamma lactamase; hydrolase, alpha/beta hydrolase, CO-factor free
haloperoxidase,; 1.73A {Microbacterium} SCOP: c.69.1.12
PDB: 1hl7_A*
Length = 279
Score = 26.6 bits (59), Expect = 8.2
Identities = 9/55 (16%), Positives = 24/55 (43%), Gaps = 1/55 (1%)
Query: 102 DIHCVGHSLG-AHICGMMSNHLTHRMHKIIGIDPARPLVDRYGDKAFRLTRDDAN 155
D+ VG S+G + ++ + R+ K+ + P + + D + ++ +
Sbjct: 91 DVVLVGFSMGTGELARYVARYGHERVAKLAFLASLEPFLVQRDDNPEGVPQEVFD 145
>2wfl_A Polyneuridine-aldehyde esterase; alkaloid metabolism, monoterpenoid
indole alkaloids, PNAE, hydrolase, serine esterase; HET:
CME; 2.10A {Rauvolfia serpentina} PDB: 2wfm_A 3gzj_A*
Length = 264
Score = 26.4 bits (58), Expect = 8.4
Identities = 14/121 (11%), Positives = 38/121 (31%), Gaps = 9/121 (7%)
Query: 18 YAGWDPHKRNVIIIHGFNQSESQ-SPMTIIRDAYIRRRDYNVFMLDFADLAPFPCYLSSL 76
A +++ +++HG + + + V +D + P L +
Sbjct: 3 SAANAKQQKHFVLVHGGCLGAWIWYKLK----PLLESAGHKVTAVDLSAAGINPRRLDEI 58
Query: 77 SNTRLVAQCAAQFYSHLTHHGASAYDIHCVGHSLGAHICGMMSNHLTHRMHKIIGIDPAR 136
R ++ + + + + +GHS G G+ ++ + +
Sbjct: 59 HTFRDYSEPLMEVMASIPPDE----KVVLLGHSFGGMSLGLAMETYPEKISVAVFMSAMM 114
Query: 137 P 137
P
Sbjct: 115 P 115
>3ia2_A Arylesterase; alpha-beta hydrolase fold, transition state analog,
hydrolas oxidoreductase, peroxidase; 1.65A {Pseudomonas
fluorescens} PDB: 1va4_A 3hi4_A 3hea_A
Length = 271
Score = 26.5 bits (59), Expect = 8.9
Identities = 10/55 (18%), Positives = 22/55 (40%), Gaps = 1/55 (1%)
Query: 102 DIHCVGHSLGAHICGM-MSNHLTHRMHKIIGIDPARPLVDRYGDKAFRLTRDDAN 155
++ VG S+G ++ H + R+ ++ + PL + D + D
Sbjct: 87 EVTLVGFSMGGGDVARYIARHGSARVAGLVLLGAVTPLFGQKPDYPQGVPLDVFA 141
>1oe1_A Dissimilatory copper-containing nitrite reductase; denitrification;
HET: PG4; 1.04A {Alcaligenes xylosoxidans} SCOP: b.6.1.3
b.6.1.3 PDB: 1oe3_A* 2xwz_A* 2vn3_A 2zon_A* 1haw_A
1hau_A* 2vm4_A* 2vw4_A* 2vw6_A* 2vw7_A* 2vm3_A* 1oe2_A*
2jl0_A* 2xx1_A 2xxg_A* 2xxf_A* 1gs8_A 1wa1_X* 1wa2_X*
2jl3_A* ...
Length = 336
Score = 26.3 bits (58), Expect = 9.6
Identities = 12/53 (22%), Positives = 16/53 (30%), Gaps = 9/53 (16%)
Query: 93 LTHHGASAYDIHCVGHSLGAHICGMMSNHLTHRMHKIIGIDPARPLVDRYGDK 145
G Y HC GM+ H+ M + + P L D G
Sbjct: 120 ADRSGTFVY--HC-------APEGMVPWHVVSGMSGTLMVLPRDGLKDPQGKP 163
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.326 0.138 0.450
Gapped
Lambda K H
0.267 0.0518 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,908,827
Number of extensions: 228928
Number of successful extensions: 850
Number of sequences better than 10.0: 1
Number of HSP's gapped: 807
Number of HSP's successfully gapped: 96
Length of query: 247
Length of database: 6,701,793
Length adjustment: 91
Effective length of query: 156
Effective length of database: 4,160,982
Effective search space: 649113192
Effective search space used: 649113192
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 56 (25.8 bits)