RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy16575
(247 letters)
>d1bu8a2 c.69.1.19 (A:1-336) Pancreatic lipase, N-terminal domain
{Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 338
Score = 165 bits (418), Expect = 3e-50
Identities = 66/266 (24%), Positives = 108/266 (40%), Gaps = 29/266 (10%)
Query: 7 RINILKSNSLKYAGWDPHKRNVIIIHGFNQSESQSPMTIIRDAYIRRRDYNVFMLDFADL 66
+I+ + +++K++ + ++ I+HGF + + + N +D+
Sbjct: 52 KISATEPDTIKFSNFQLDRKTRFIVHGFIDKGEDGWLLDMCKKMFQVEKVNCICVDWRRG 111
Query: 67 APFPCYLSSLSNTRLVAQCAAQFYSH-LTHHGASAYDIHCVGHSLGAHICGMMSNHLTHR 125
+ Y + NTR+V A T G S ++H +GHSLGAH+ G L
Sbjct: 112 SRTE-YTQASYNTRVVGAEIAFLVQVLSTEMGYSPENVHLIGHSLGAHVVGEAGRRLEGH 170
Query: 126 MHKIIGIDPARPLVDRYGDKAFRLTRDDANFVQVIHTNA------WFLGEAPQVGHVDFC 179
+ +I G+DPA P + RL DA FV VIHT++ G + +VGH+DF
Sbjct: 171 VGRITGLDPAEPCFQ-GLPEEVRLDPSDAMFVDVIHTDSAPIIPYLGFGMSQKVGHLDFF 229
Query: 180 VNGGRMQPSCTK------------EGRMIRRARCSHFMGACFFAATVSERGRRHQGHPCS 227
NGG+ P C K C+H ++A+++ G+PCS
Sbjct: 230 PNGGKEMPGCQKNILSTIVDINGIWEGTQNFVACNHLRSYKYYASSIL-NPDGFLGYPCS 288
Query: 228 -------LSCTGRLGPGTVSMGEHTP 246
C G MG +
Sbjct: 289 SYEKFQQNDCFPCPEEGCPKMGHYAD 314
>d1rp1a2 c.69.1.19 (A:1-336) Pancreatic lipase, N-terminal domain
{Dog (Canis familiaris) [TaxId: 9615]}
Length = 337
Score = 157 bits (397), Expect = 4e-47
Identities = 60/264 (22%), Positives = 103/264 (39%), Gaps = 30/264 (11%)
Query: 7 RINILKSNSLKYAGWDPHKRNVIIIHGFNQSESQSPMTIIRDAYIRRRDYNVFMLDFADL 66
+ +++ + + K+ IIHGF ++ + + + + N +D+
Sbjct: 52 TLLPSDPSTIGASNFQTDKKTRFIIHGFIDKGEENWLLDMCKNMFKVEEVNCICVDWKKG 111
Query: 67 APFPCYLSSLSNTRLVAQCAAQFYSH-LTHHGASAYDIHCVGHSLGAHICGMMSNHLTHR 125
+ Y + +N R+V AQ S ++ S + +GHSLGAH+ G +
Sbjct: 112 S-QTSYTQAANNVRVVGAQVAQMLSMLSANYSYSPSQVQLIGHSLGAHVAGEAGSRT-PG 169
Query: 126 MHKIIGIDPARPLVDRYGDKAFRLTRDDANFVQVIHTNAWFL------GEAPQVGHVDFC 179
+ +I G+DP + RL DA+FV VIHT+A L G + Q+GH+DF
Sbjct: 170 LGRITGLDPVEASFQG-TPEEVRLDPTDADFVDVIHTDAAPLIPFLGFGTSQQMGHLDFF 228
Query: 180 VNGGRMQPSCTK------------EGRMIRRARCSHFMGACFFAATVSERGRRHQGHPCS 227
NGG P C K C+H +++ ++ +PC+
Sbjct: 229 PNGGEEMPGCKKNALSQIVDLDGIWEGTRDFVACNHLRSYKYYSESIL-NPDGFASYPCA 287
Query: 228 -------LSCTGRLGPGTVSMGEH 244
C G MG +
Sbjct: 288 SYRAFESNKCFPCPDQGCPQMGHY 311
>d1ei9a_ c.69.1.13 (A:) Palmitoyl protein thioesterase 1 {Cow (Bos
taurus) [TaxId: 9913]}
Length = 279
Score = 42.2 bits (99), Expect = 2e-05
Identities = 17/114 (14%), Positives = 32/114 (28%), Gaps = 8/114 (7%)
Query: 23 PHKRNVIIIHGFNQSESQSP-MTIIRDAYIRRR--DYNVFMLDFADLAPFPCYLSSLSNT 79
P ++I HG S M I+ + ++ +V L+ + S
Sbjct: 3 PAPLPLVIWHGMGDSCCNPLSMGAIKK-MVEKKIPGIHVLSLE---IGKTLREDVENSFF 58
Query: 80 RLVAQCAAQFYSHLTHHGASAYDIHCVGHSLGAHIC-GMMSNHLTHRMHKIIGI 132
V L + +G S G + + M +I +
Sbjct: 59 LNVNSQVTTVCQILAKDPKLQQGYNAMGFSQGGQFLRAVAQRCPSPPMVNLISV 112
>d1ex9a_ c.69.1.18 (A:) Lipase {Pseudomonas aeruginosa [TaxId: 287]}
Length = 285
Score = 39.4 bits (91), Expect = 2e-04
Identities = 13/118 (11%), Positives = 36/118 (30%), Gaps = 13/118 (11%)
Query: 19 AGWDPHKRNVIIIHGFNQSESQSPMTIIRD--AYIRRRDYNVFMLDFADLAPFPCYLSSL 76
+ + K +++ HG ++ + + +RR V++ +
Sbjct: 1 STYTQTKYPIVLAHGMLGFDNILGVDYWFGIPSALRRDGAQVYVTE---------VSQLD 51
Query: 77 SNTRLVAQCAAQFYSHLTHHGASAYDIHCVGHSLGAHICGMMSNHLTHRMHKIIGIDP 134
++ Q Q + G ++ +GHS G ++ + +
Sbjct: 52 TSEVRGEQLLQQVEEIVALSGQP--KVNLIGHSHGGPTIRYVAAVRPDLIASATSVGA 107
>d1tcaa_ c.69.1.17 (A:) Triacylglycerol lipase {Yeast (Candida
antarctica), form b [TaxId: 34362]}
Length = 317
Score = 37.8 bits (87), Expect = 8e-04
Identities = 9/116 (7%), Positives = 32/116 (27%), Gaps = 13/116 (11%)
Query: 22 DPHKRNVIIIHGFNQSESQSPMTIIRDAYIRRRDYNVFMLDFADLAPFPCYLSSLSNTRL 81
+ ++++ G + QS + + Y + P ++ +
Sbjct: 28 SSVSKPILLVPGTGTTGPQSFDSNWIP-LSTQLGYTPCWISP------PPFMLN-DTQVN 79
Query: 82 VAQCAAQFYSHLTHHGASAYDIHCVGHSLGAHICGMMSNH---LTHRMHKIIGIDP 134
+ G + + + S G + + ++ +++ P
Sbjct: 80 TEYMVNAITALYAGSGNN--KLPVLTWSQGGLVAQWGLTFFPSIRSKVDRLMAFAP 133
>d1thta_ c.69.1.13 (A:) Myristoyl-ACP-specific thioesterase {Vibrio
harveyi [TaxId: 669]}
Length = 302
Score = 34.1 bits (77), Expect = 0.010
Identities = 20/131 (15%), Positives = 38/131 (29%), Gaps = 14/131 (10%)
Query: 4 TKTRINILK-SNSLKYAGWDPHKRN--------VIIIHGFNQSESQSPMTIIRDAYIRRR 54
KT ++L+ +N + W+ + ++I GF + Y+
Sbjct: 2 CKTIAHVLRVNNGQELHVWETPPKENVPFKNNTILIASGF-ARRMDHFAGLAE--YLSTN 58
Query: 55 DYNVFMLDFADLAPFPCYLSSLSNTRLVAQCAAQFYSHLTHHGASAYDIHCVGHSLGAHI 114
++VF D Y L G +I + SL A +
Sbjct: 59 GFHVFRYDSLHHVGLSSGSIDEFTMTTGKNSLCTVYHWLQTKGTQ--NIGLIAASLSARV 116
Query: 115 CGMMSNHLTHR 125
+ + L
Sbjct: 117 AYEVISDLELS 127
>d1tqha_ c.69.1.29 (A:) Carboxylesterase Est {Bacillus
stearothermophilus [TaxId: 1422]}
Length = 242
Score = 31.8 bits (70), Expect = 0.066
Identities = 17/186 (9%), Positives = 38/186 (20%), Gaps = 6/186 (3%)
Query: 25 KRNVIIIHGFNQSESQSPMTIIRDAYIRRRDYNVFMLDFADLAPFPCYLSSLSNTRLVAQ 84
+R V+++HGF + + M ++ + Y + P L
Sbjct: 11 ERAVLLLHGFTGNSADVRMLG---RFLESKGYTCHAPIYKGHGVPPEELVHTGPDDWWQD 67
Query: 85 CAAQFYSHLTHHGASAYDIHCVGHSLGAHICGMMSNHLTHRMHKIIGIDPARPLVDRYGD 144
+ I G SLG + + + + +
Sbjct: 68 VMNGYEFLKNKG---YEKIAVAGLSLGGVFSLKLGYTVPIEGIVTMCAPMYIKSEETMYE 124
Query: 145 KAFRLTRDDANFVQVIHTNAWFLGEAPQVGHVDFCVNGGRMQPSCTKEGRMIRRARCSHF 204
R+ E + + + +I
Sbjct: 125 GVLEYAREYKKREGKSEEQIEQEMEKFKQTPMKTLKALQELIADVRDHLDLIYAPTFVVQ 184
Query: 205 MGACFF 210
Sbjct: 185 ARHDEM 190
>d1k8qa_ c.69.1.6 (A:) Gastric lipase {Dog (Canis familiaris)
[TaxId: 9615]}
Length = 377
Score = 31.2 bits (69), Expect = 0.11
Identities = 16/122 (13%), Positives = 34/122 (27%), Gaps = 13/122 (10%)
Query: 28 VIIIHGFNQSESQSPMTIIRDA---YIRRRDYNVFMLDF---------ADLAPFPCYLSS 75
+ HG S + + ++ + Y+V++ + +P +
Sbjct: 61 AFLQHGLLASATNWISNLPNNSLAFILADAGYDVWLGNSRGNTWARRNLYYSPDSVEFWA 120
Query: 76 LSNTRLVAQCAAQFYSHLTHHGASAYDIHCVGHSLGAHICGMMSNHLTHRMHKIIGIDPA 135
S + + +H VGHS G I + + +I
Sbjct: 121 FSFDEMAKYDLPATIDFILKK-TGQDKLHYVGHSQGTTIGFIAFSTNPKLAKRIKTFYAL 179
Query: 136 RP 137
P
Sbjct: 180 AP 181
>d1uxoa_ c.69.1.31 (A:) Hypothetical protein YdeN {Bacillus subtilis
[TaxId: 1423]}
Length = 186
Score = 29.3 bits (64), Expect = 0.29
Identities = 16/127 (12%), Positives = 30/127 (23%), Gaps = 12/127 (9%)
Query: 26 RNVIIIHGFNQSESQSPMTIIRDAYIRRRDYNVFMLDFAD--LAPFPCYLSSLSNTR--- 80
+ V IIHG+ S + ++ + +L+ + +L +LS +
Sbjct: 2 KQVYIIHGYRASSTNHWFPWLKK-RLLADGVQADILNMPNPLQPRLEDWLDTLSLYQHTL 60
Query: 81 -----LVAQC-AAQFYSHLTHHGASAYDIHCVGHSLGAHICGMMSNHLTHRMHKIIGIDP 134
LVA H + + G L
Sbjct: 61 HENTYLVAHSLGCPAILRFLEHLQLRAALGGIILVSGFAKSLPTLQMLDEFTQGSFDHQK 120
Query: 135 ARPLVDR 141
Sbjct: 121 IIESAKH 127
>d2gp4a1 c.8.2.2 (A:419-608) 6-phosphogluconate dehydratase EDD
{Shewanella oneidensis [TaxId: 70863]}
Length = 190
Score = 28.7 bits (64), Expect = 0.48
Identities = 5/58 (8%), Positives = 14/58 (24%)
Query: 185 MQPSCTKEGRMIRRARCSHFMGACFFAATVSERGRRHQGHPCSLSCTGRLGPGTVSMG 242
+++ T + +G +L GR+ + +
Sbjct: 45 SGALDRDCVVVVKGQGPKANGMPELHKLTPLLGSLQDKGFKVALMTDGRMSGASGKVP 102
>gi|115385463|ref|XP_001209278.1|(7-278:285) hypothetical protein
ATEG_09976 [Aspergillus terreus NIH2624]
gi|114187725|gb|EAU29425.1| hypothetical protein
ATEG_09976 [Aspergillus terreus NIH2624] E=1e-100
s/c=1.35 id=66% cov=100%
Length = 272
Score = 28.9 bits (64), Expect = 0.55
Identities = 18/65 (27%), Positives = 27/65 (41%), Gaps = 5/65 (7%)
Query: 101 YDIHCVGHSLGAHICGMMSNHLTHRMHKIIG-IDPARPLVDRYGDKAF-RLTRDDANFVQ 158
Y++ VGHSLGA + + + L + + A P V + A R D +
Sbjct: 137 YELVVVGHSLGAAVATLAAADLRTKGYPSATFYAFASPRV---ANPALARFITDQGRNYR 193
Query: 159 VIHTN 163
HTN
Sbjct: 194 FTHTN 198
>d1b6ga_ c.69.1.8 (A:) Haloalkane dehalogenase {Xanthobacter
autotrophicus [TaxId: 280]}
Length = 310
Score = 28.0 bits (60), Expect = 1.2
Identities = 16/220 (7%), Positives = 39/220 (17%), Gaps = 7/220 (3%)
Query: 28 VIIIHGFNQSESQSPMTIIRDAYIRRRDYNVFMLDFADLAPFPCYLSSLSNTRLVAQCAA 87
+ +HG I A R F
Sbjct: 50 FLCLHGEPTWSYLYRKMIPVFAESGARVIAPDFFGFGKSDKPVDE-------EDYTFEFH 102
Query: 88 QFYSHLTHHGASAYDIHCVGHSLGAHICGMMSNHLTHRMHKIIGIDPARPLVDRYGDKAF 147
+ + +I V G + + R ++I ++
Sbjct: 103 RNFLLALIERLDLRNITLVVQDWGGFLGLTLPMADPSRFKRLIIMNACLMTDPVTQPAFS 162
Query: 148 RLTRDDANFVQVIHTNAWFLGEAPQVGHVDFCVNGGRMQPSCTKEGRMIRRARCSHFMGA 207
A+ + + + + + +
Sbjct: 163 AFVTQPADGFTAWKYDLVTPSDLRLDQFMKRWAPTLTEAEASAYAAPFPDTSYQAGVRKF 222
Query: 208 CFFAATVSERGRRHQGHPCSLSCTGRLGPGTVSMGEHTPI 247
A + S G +++G +
Sbjct: 223 PKMVAQRDQACIDISTEAISFWQNDWNGQTFMAIGMKDKL 262
>d1q0ra_ c.69.1.28 (A:) Aclacinomycin methylesterase RdmC
{Streptomyces purpurascens [TaxId: 1924]}
Length = 297
Score = 26.8 bits (57), Expect = 2.3
Identities = 19/145 (13%), Positives = 39/145 (26%), Gaps = 5/145 (3%)
Query: 22 DPHKRNVIIIHGFNQSESQSPMTIIRDAYIRRRDYNVFMLDFADLAPFPCYLSSLSNTRL 81
DP ++++ G N S P R + +V D +
Sbjct: 19 DPADPALLLVMGGNLSALGWPDEFAR--RLADGGLHVIRY---DHRDTGRSTTRDFAAHP 73
Query: 82 VAQCAAQFYSHLTHHGASAYDIHCVGHSLGAHICGMMSNHLTHRMHKIIGIDPARPLVDR 141
+ G H VG S+GA I +++ R+ + + +D
Sbjct: 74 YGFGELAADAVAVLDGWGVDRAHVVGLSMGATITQVIALDHHDRLSSLTMLLGGGLDIDF 133
Query: 142 YGDKAFRLTRDDANFVQVIHTNAWF 166
+ + + +
Sbjct: 134 DANIERVMRGEPTLDGLPGPQQPFL 158
>d1frfl_ e.18.1.1 (L:) Nickel-iron hydrogenase, large subunit
{Desulfovibrio fructosovorans [TaxId: 878]}
Length = 543
Score = 26.3 bits (57), Expect = 4.0
Identities = 15/118 (12%), Positives = 29/118 (24%), Gaps = 10/118 (8%)
Query: 80 RLVAQCAAQFYSHLTHHGASAYDIHCVGHSLGAHICGMMSNHLTHRMHKIIGIDPARPLV 139
R + + + HL H + + ++ I
Sbjct: 97 RNLVMASQYLHDHLVHFYHLHALDWVDVTA-----ALKADPNKAAKLAASIDTARTGNSE 151
Query: 140 DRYGDKAFRLTRDDANFVQVIHTNAWFLGEAPQVGHVDFCVNGGRMQPSCTKEGRMIR 197
+L + I TNA+FLG GH + + + +
Sbjct: 152 KALKAVQDKLKAFVESGQLGIFTNAYFLG-----GHKAYYLPPEVNLIATAHYLEALH 204
>d1eaka5 g.14.1.2 (A:336-393) Gelatinase A (MMP-2) type II modules
{Human (Homo sapiens) [TaxId: 9606]}
Length = 58
Score = 24.4 bits (53), Expect = 4.1
Identities = 7/21 (33%), Positives = 9/21 (42%)
Query: 182 GGRMQPSCTKEGRMIRRARCS 202
G SCT GR + C+
Sbjct: 21 LGNKYESCTSAGRSDGKMWCA 41
>d1e88a2 g.14.1.2 (A:102-160) Fibronectin {Human (Homo sapiens)
[TaxId: 9606]}
Length = 59
Score = 24.3 bits (53), Expect = 4.1
Identities = 6/21 (28%), Positives = 6/21 (28%)
Query: 182 GGRMQPSCTKEGRMIRRARCS 202
CT EGR C
Sbjct: 22 NNHNYTDCTSEGRRDNMKWCG 42
>d1eaka3 g.14.1.2 (A:217-277) Gelatinase A (MMP-2) type II modules
{Human (Homo sapiens) [TaxId: 9606]}
Length = 61
Score = 24.3 bits (53), Expect = 4.2
Identities = 8/21 (38%), Positives = 9/21 (42%)
Query: 182 GGRMQPSCTKEGRMIRRARCS 202
G+ SCT GR CS
Sbjct: 24 NGKEYNSCTDTGRSDGFLWCS 44
>d1twia1 b.49.2.3 (A:15-49,A:314-448) Diaminopimelate decarboxylase
LysA {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Length = 170
Score = 25.8 bits (56), Expect = 4.6
Identities = 4/49 (8%), Positives = 14/49 (28%)
Query: 85 CAAQFYSHLTHHGASAYDIHCVGHSLGAHICGMMSNHLTHRMHKIIGID 133
++ + +GA+ M +N+ +++
Sbjct: 95 ESSDVFGRDRELDKVEVGDVLAIFDVGAYGISMANNYNARGRPRMVLTS 143
>d1e88a1 g.14.1.2 (A:42-101) Fibronectin {Human (Homo sapiens)
[TaxId: 9606]}
Length = 60
Score = 23.9 bits (52), Expect = 4.8
Identities = 10/21 (47%), Positives = 10/21 (47%)
Query: 182 GGRMQPSCTKEGRMIRRARCS 202
GR SCT EGR CS
Sbjct: 22 NGRTFYSCTTEGRQDGHLWCS 42
>d1udca_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase
(UDP-galactose 4-epimerase) {Escherichia coli [TaxId:
562]}
Length = 338
Score = 26.1 bits (56), Expect = 4.9
Identities = 14/72 (19%), Positives = 23/72 (31%), Gaps = 4/72 (5%)
Query: 110 LGAHICGMMSNHLTHRMHKIIGIDPARPLVDRYGDKAFRLTRDDANFVQVIHTNAWFLGE 169
+G+H C L H +I +D RL FV+ N + E
Sbjct: 12 IGSHTC----VQLLQNGHDVIILDNLCNSKRSVLPVIERLGGKHPTFVEGDIRNEALMTE 67
Query: 170 APQVGHVDFCVN 181
+D ++
Sbjct: 68 ILHDHAIDTVIH 79
>d2rhwa1 c.69.1.10 (A:4-286)
2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase
(BPHD) {Burkholderia xenovorans [TaxId: 36873]}
Length = 283
Score = 25.9 bits (55), Expect = 5.0
Identities = 24/206 (11%), Positives = 46/206 (22%), Gaps = 6/206 (2%)
Query: 28 VIIIHGFNQSESQSPMTIIRDAYIRRRDYNVFMLDFADLAPFPCYLSSLSNTRLVAQCAA 87
VI++HG Y V + D + + A+
Sbjct: 33 VIMLHGGGPGAGGWSNYYRNVGPFVDAGYRVILKDSPGFNKSDAVVMDEQRGLVNARAVK 92
Query: 88 QFYSHLTHHGASAYDIHCVGHSLGAHICGMMSNHLTHRMHKIIGIDPARPLVDRYGDKAF 147
L H VG+++G + R+ K+I + P L
Sbjct: 93 GLMDALDID-----RAHLVGNAMGGATALNFALEYPDRIGKLILMGPG-GLGPSMFAPMP 146
Query: 148 RLTRDDANFVQVIHTNAWFLGEAPQVGHVDFCVNGGRMQPSCTKEGRMIRRARCSHFMGA 207
+ + + + +Q R +
Sbjct: 147 MEGIKLLFKLYAEPSYETLKQMLQVFLYDQSLITEELLQGRWEAIQRQPEHLKNFLISAQ 206
Query: 208 CFFAATVSERGRRHQGHPCSLSCTGR 233
+T R + + GR
Sbjct: 207 KAPLSTWDVTARLGEIKAKTFITWGR 232
>d1l6ja3 g.14.1.2 (A:216-274) Gelatinase B (MMP-9) type II modules
{Human (Homo sapiens) [TaxId: 9606]}
Length = 59
Score = 23.9 bits (52), Expect = 5.1
Identities = 8/21 (38%), Positives = 10/21 (47%)
Query: 182 GGRMQPSCTKEGRMIRRARCS 202
GR +CT +GR CS
Sbjct: 22 EGRSYSACTTDGRSDGLPWCS 42
>d1l6ja5 g.14.1.2 (A:332-390) Gelatinase B (MMP-9) type II modules
{Human (Homo sapiens) [TaxId: 9606]}
Length = 59
Score = 23.9 bits (52), Expect = 5.7
Identities = 8/21 (38%), Positives = 11/21 (52%)
Query: 182 GGRMQPSCTKEGRMIRRARCS 202
G+ +CT EGR R C+
Sbjct: 23 LGKEYSTCTSEGRGDGRLWCA 43
>d1dpta_ d.80.1.3 (A:) D-dopachrome tautomerase {Human (Homo
sapiens) [TaxId: 9606]}
Length = 117
Score = 24.8 bits (54), Expect = 6.6
Identities = 7/36 (19%), Positives = 11/36 (30%)
Query: 101 YDIHCVGHSLGAHICGMMSNHLTHRMHKIIGIDPAR 136
I +G A S H + K + + R
Sbjct: 59 LSISSIGVVGTAEDNRSHSAHFFEFLTKELALGQDR 94
>d1eaka4 g.14.1.2 (A:278-335) Gelatinase A (MMP-2) type II modules
{Human (Homo sapiens) [TaxId: 9606]}
Length = 58
Score = 23.5 bits (51), Expect = 7.0
Identities = 8/21 (38%), Positives = 8/21 (38%)
Query: 182 GGRMQPSCTKEGRMIRRARCS 202
G SCT EGR C
Sbjct: 21 QGTSYDSCTTEGRTDGYRWCG 41
>d1pjaa_ c.69.1.13 (A:) Palmitoyl protein thioesterase 2 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 268
Score = 25.1 bits (53), Expect = 9.1
Identities = 20/131 (15%), Positives = 33/131 (25%), Gaps = 8/131 (6%)
Query: 25 KRNVIIIHGFNQSESQSPMTIIRDAYIRRRDYNVFMLDFADLAPFPCYLSSLSNTRLVAQ 84
+ VI++HG S S S ++ V +LD D S V
Sbjct: 2 YKPVIVVHGLFDS-SYSFRHLLEYINETHPGTVVTVLDLFD-----GRESLRPLWEQVQG 55
Query: 85 CAAQFYSHLTHHGASAYDIHCVGHSLGAHICGMMSNHLTHRMHKIIGIDPARPLVDRYGD 144
+ + I G ++S H + I + + D
Sbjct: 56 FREAVVPIMAKAPQGVHLICY--SQGGLVCRALLSVMDDHNVDSFISLSSPQMGQYGDTD 113
Query: 145 KAFRLTRDDAN 155
L
Sbjct: 114 YLKWLFPTSMR 124
>d1r3da_ c.69.1.35 (A:) Hypothetical protein VC1974 {Vibrio cholerae
[TaxId: 666]}
Length = 264
Score = 24.9 bits (52), Expect = 9.2
Identities = 22/200 (11%), Positives = 41/200 (20%), Gaps = 3/200 (1%)
Query: 11 LKSNSLKYAGWDPHKRNVIIIHGFNQSESQSPMTIIRDAYIRRRDYNVFMLDFADLAPFP 70
L SN L +A V+++HG S ++ ++ R LD P
Sbjct: 2 LLSNQLHFAKPTARTPLVVLVHGLLGS-GADWQPVLS--HLARTQCAALTLDLPGHGTNP 58
Query: 71 CYLSSLSNTRLVAQCAAQFYSHLTHHGASAYDIHCVGHSLGAHICGMMSNHLTHRMHKII 130
+ + G + + + L R I
Sbjct: 59 ERHCDNFAEAVEMIEQTVQAHVTSEVPVILVGYSLGGRLIMHGLAQGAFSRLNLRGAIIE 118
Query: 131 GIDPARPLVDRYGDKAFRLTRDDANFVQVIHTNAWFLGEAPQVGHVDFCVNGGRMQPSCT 190
G + + + F Q + V + +
Sbjct: 119 GGHFGLQENEEKAARWQHDQQWAQRFSQQPIEHVLSDWYQQAVFSSLNHEQRQTLIAQRS 178
Query: 191 KEGRMIRRARCSHFMGACFF 210
A
Sbjct: 179 ANLGSSVAHMLLATSLAKQP 198
>d1c4xa_ c.69.1.10 (A:) 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate
hydrolase (BPHD) {Rhodococcus sp., strain rha1 [TaxId:
1831]}
Length = 281
Score = 24.9 bits (52), Expect = 9.9
Identities = 21/205 (10%), Positives = 43/205 (20%), Gaps = 1/205 (0%)
Query: 22 DPHKRNVIIIHGFNQSESQSPMTIIRDAYIRRRDYNVFMLDFADLAPFPCYLSSLSNTRL 81
DP V+++HG + + ++ V D + +
Sbjct: 23 DPQSPAVVLLHGAGPG-AHAASNWRPIIPDLAENFFVVAPDLIGFGQSEYPETYPGHIMS 81
Query: 82 VAQCAAQFYSHLTHHGASAYDIHCVGHSLGAHICGMMSNHLTHRMHKIIGIDPARPLVDR 141
+ L +H GA ++ + P+ R
Sbjct: 82 WVGMRVEQILGLMNHFGIEKSHIVGNSMGGAVTLQLVVEAPERFDKVALMGSVGAPMNAR 141
Query: 142 YGDKAFRLTRDDANFVQVIHTNAWFLGEAPQVGHVDFCVNGGRMQPSCTKEGRMIRRARC 201
+ A L + P+ + R + + E R I+
Sbjct: 142 PPELARLLAFYADPRLTPYRELIHSFVYDPENFPGMEEIVKSRFEVANDPEVRRIQEVMF 201
Query: 202 SHFMGACFFAATVSERGRRHQGHPC 226
R
Sbjct: 202 ESMKAGMESLVIPPATLGRLPHDVL 226
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.326 0.138 0.450
Gapped
Lambda K H
0.267 0.0370 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 963,010
Number of extensions: 43663
Number of successful extensions: 187
Number of sequences better than 10.0: 1
Number of HSP's gapped: 176
Number of HSP's successfully gapped: 44
Length of query: 247
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 164
Effective length of database: 1,268,006
Effective search space: 207952984
Effective search space used: 207952984
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 52 (24.8 bits)