RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy16576
         (73 letters)



>d1rp4a_ a.227.1.1 (A:) Endoplasmic oxidoreductin 1, Ero1p {Baker's
           yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 374

 Score = 27.2 bits (60), Expect = 0.16
 Identities = 11/46 (23%), Positives = 22/46 (47%), Gaps = 7/46 (15%)

Query: 19  HASIQIAIAD--VDPATGRTTDNLKMYAICGQIRRMGESDDCIGRL 62
           HASI   ++   ++  TG+   NL ++     + R+G   D +  +
Sbjct: 178 HASIGTHLSKEYLNTKTGKWEPNLDLF-----MARIGNFPDRVTNM 218


>d1t71a_ d.159.1.9 (A:) Hypothetical protein MPN349 {Mycoplasma
           pneumoniae [TaxId: 2104]}
          Length = 281

 Score = 22.2 bits (47), Expect = 7.8
 Identities = 5/32 (15%), Positives = 11/32 (34%)

Query: 6   RSSASNRIIAAKDHASIQIAIADVDPATGRTT 37
            + +      +K  A +     +VD  T +  
Sbjct: 227 CAGSREHFEVSKCGAQLNGVFFEVDVNTKKVI 258


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.319    0.132    0.370 

Gapped
Lambda     K      H
   0.267   0.0596    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 249,936
Number of extensions: 8831
Number of successful extensions: 13
Number of sequences better than 10.0: 1
Number of HSP's gapped: 13
Number of HSP's successfully gapped: 2
Length of query: 73
Length of database: 2,407,596
Length adjustment: 41
Effective length of query: 32
Effective length of database: 1,844,666
Effective search space: 59029312
Effective search space used: 59029312
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.2 bits)