Query psy16577
Match_columns 491
No_of_seqs 27 out of 29
Neff 2.2
Searched_HMMs 46136
Date Fri Aug 16 16:33:03 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16577.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/16577hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PHA03377 EBNA-3C; Provisional 79.8 3.5 7.5E-05 46.9 5.9 17 367-383 910-926 (1000)
2 PHA03377 EBNA-3C; Provisional 79.7 4.3 9.2E-05 46.3 6.5 14 68-81 559-572 (1000)
3 KOG1924|consensus 77.8 12 0.00027 43.2 9.4 10 354-363 842-851 (1102)
4 PF05287 PMG: PMG protein; In 41.6 87 0.0019 29.8 6.6 47 117-163 123-169 (180)
5 KOG0971|consensus 36.0 1.3E+02 0.0029 35.9 7.9 14 317-330 280-293 (1243)
6 KOG1923|consensus 29.6 1.9E+02 0.004 33.8 7.7 31 305-335 467-500 (830)
7 KOG0084|consensus 24.1 23 0.0005 34.9 -0.3 106 319-435 65-182 (205)
8 KOG1632|consensus 23.3 52 0.0011 33.9 2.0 49 307-363 239-291 (345)
9 KOG1923|consensus 22.8 3.3E+02 0.0071 32.0 8.0 10 479-488 694-703 (830)
10 COG1324 CutA Uncharacterized p 19.4 26 0.00057 31.3 -0.9 38 386-423 59-102 (104)
No 1
>PHA03377 EBNA-3C; Provisional
Probab=79.82 E-value=3.5 Score=46.92 Aligned_cols=17 Identities=35% Similarity=0.462 Sum_probs=9.3
Q ss_pred cCCcccccccccccccc
Q psy16577 367 NKSSVECDESVEHNQSM 383 (491)
Q Consensus 367 ~~~~~~~~~~~~~~~~~ 383 (491)
..-.|-||.+-..--||
T Consensus 910 dsm~~g~~~sgt~~psm 926 (1000)
T PHA03377 910 DSMAVGCDSSGTACPSM 926 (1000)
T ss_pred hhhhhcccCCCCcCCCc
Confidence 33456676665544444
No 2
>PHA03377 EBNA-3C; Provisional
Probab=79.70 E-value=4.3 Score=46.26 Aligned_cols=14 Identities=21% Similarity=0.216 Sum_probs=5.2
Q ss_pred ccCCCCCCCCCCCC
Q psy16577 68 SVGFRSDNPASMGF 81 (491)
Q Consensus 68 S~Gp~SvgP~S~Gp 81 (491)
-.|++.+.+.-++|
T Consensus 559 ~~g~p~~~~~~~~~ 572 (1000)
T PHA03377 559 DRGPPKASPPVMAP 572 (1000)
T ss_pred ccCCcccCCcccCC
Confidence 33333333333333
No 3
>KOG1924|consensus
Probab=77.77 E-value=12 Score=43.20 Aligned_cols=10 Identities=40% Similarity=0.670 Sum_probs=5.8
Q ss_pred ccCCccceee
Q psy16577 354 EYNPRVDCKL 363 (491)
Q Consensus 354 ~~~~~~~~~~ 363 (491)
-||-++=|||
T Consensus 842 gF~is~L~kL 851 (1102)
T KOG1924|consen 842 GFNISFLCKL 851 (1102)
T ss_pred ccchHHHHhh
Confidence 4566666665
No 4
>PF05287 PMG: PMG protein; InterPro: IPR007951 This family consists of several mouse anagen-specific protein mKAP13 (PMG1 and PMG2). PMG1 and 2 contain characteristic repeats reminiscent of the keratin-associated proteins (KAPs). Both genes are expressed in growing hair follicles in skin as well as in sebaceous and eccrine sweat glands. Interestingly, expression is also detected in the mammary epithelium where it is limited to the onset of the pubertal growth phase and is independent of ovarian hormones. Their broad, developmentally controlled expression pattern, together with their unique amino acid composition, demonstrate that pmg-1 and pmg-2 constitute a novel KAP gene family participating in the differentiation of all epithelial cells forming the epidermal appendages [].
Probab=41.57 E-value=87 Score=29.81 Aligned_cols=47 Identities=17% Similarity=0.000 Sum_probs=19.6
Q ss_pred CcCCCCCCCCCCCCCCCCCCCccCCCCCCCCccCCCCCCccccCCCC
Q psy16577 117 ASVGFRSDNPASMGFRSDNPASIGFRSDNPASVGFRSDNAVSVGFRS 163 (491)
Q Consensus 117 ~svGp~SdgPaS~GPrSdGPas~GpqSdGPaSvGp~SdgP~S~GFrS 163 (491)
.+++.++.+=.+.|+|+++=.+.++|+.+-.+.+-+|..=.+++||.
T Consensus 123 ~s~~c~p~g~~S~~~~pl~~~s~~~~sl~~~s~~CrP~~~~s~s~q~ 169 (180)
T PF05287_consen 123 GSRSCQPLGCGSSGCQPLGCGSSSCQSLSCGSSSCRPSYFSSRSCQP 169 (180)
T ss_pred ccCcccccccCcCCccCCccccCcccCCCCCCCceecCccCcCCccC
Confidence 33333344444444444444444444444444444444334444443
No 5
>KOG0971|consensus
Probab=36.00 E-value=1.3e+02 Score=35.87 Aligned_cols=14 Identities=21% Similarity=0.408 Sum_probs=6.8
Q ss_pred chhhhhHHHHHHHH
Q psy16577 317 DITKRQEDCRQLVK 330 (491)
Q Consensus 317 ~~~~~~~~~~~~~~ 330 (491)
|+.|+..+.|+-.|
T Consensus 280 ~Lqrel~raR~e~k 293 (1243)
T KOG0971|consen 280 DLQRELKRARKEAK 293 (1243)
T ss_pred HHHHHHHHHHHHHH
Confidence 44555555554433
No 6
>KOG1923|consensus
Probab=29.59 E-value=1.9e+02 Score=33.80 Aligned_cols=31 Identities=16% Similarity=0.277 Sum_probs=18.5
Q ss_pred hhhhhhhccCccchhhh---hHHHHHHHHHHHhh
Q psy16577 305 KFKIAVQDAGFNDITKR---QEDCRQLVKEYYKS 335 (491)
Q Consensus 305 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~ 335 (491)
.|.|-++-.-|-|+.-| -|+=++|++||-.+
T Consensus 467 ~~dLk~L~~~~ve~L~r~lPTe~E~kl~~~~~~e 500 (830)
T KOG1923|consen 467 PLDLKALSLEPVELLQRILPTEAEVKLLREYERE 500 (830)
T ss_pred hccccccCCcHHHHHHhcCCchHHHHHHHHhhhh
Confidence 34455555566666555 36667788877543
No 7
>KOG0084|consensus
Probab=24.09 E-value=23 Score=34.88 Aligned_cols=106 Identities=23% Similarity=0.284 Sum_probs=62.2
Q ss_pred hhhhHHHHHHHHHHHhhcccc--------ccccchhhhhc-cccccCCccceeeeeecCCccccccccccccccc---hh
Q psy16577 319 TKRQEDCRQLVKEYYKSSVEL--------DESMDQVTMEH-SQAEYNPRVDCKLLVENKSSVECDESVEHNQSME---HK 386 (491)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~ 386 (491)
|.-||.-|.++..||++.--+ .+|..-|-+-- --..|-...-.||||-||+-.++-.-|...+.-+ +-
T Consensus 65 TAGQERFrtit~syYR~ahGii~vyDiT~~~SF~~v~~Wi~Ei~~~~~~~v~~lLVGNK~Dl~~~~~v~~~~a~~fa~~~ 144 (205)
T KOG0084|consen 65 TAGQERFRTITSSYYRGAHGIIFVYDITKQESFNNVKRWIQEIDRYASENVPKLLVGNKCDLTEKRVVSTEEAQEFADEL 144 (205)
T ss_pred ccccHHHhhhhHhhccCCCeEEEEEEcccHHHhhhHHHHHHHhhhhccCCCCeEEEeeccccHhheecCHHHHHHHHHhc
Confidence 445788899999999986322 23333333200 1123444446899999999998887777666521 11
Q ss_pred hHHHHHhhhccCCCCCCCCCCCCCCCCCCcchhhhhHHhhhhcceeeec
Q psy16577 387 TMEAHYEQSLDNRSPVDNYNQPVDGGNPEYNDVMDRQEYHKQSVHYKLS 435 (491)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 435 (491)
-|.+.||-|-.+-+ |+++ ----|....+++...|.+-+
T Consensus 145 ~~~~f~ETSAK~~~---NVe~--------~F~~la~~lk~~~~~~~~~~ 182 (205)
T KOG0084|consen 145 GIPIFLETSAKDST---NVED--------AFLTLAKELKQRKGLHVKWS 182 (205)
T ss_pred CCcceeecccCCcc---CHHH--------HHHHHHHHHHHhcccCCCCC
Confidence 22335555555444 1111 01236778888888887766
No 8
>KOG1632|consensus
Probab=23.25 E-value=52 Score=33.90 Aligned_cols=49 Identities=20% Similarity=0.417 Sum_probs=40.2
Q ss_pred hhhhhccCccchhhhhHHHHHHHHHHHhhccccccccchhhhhccccccCCc----cceee
Q psy16577 307 KIAVQDAGFNDITKRQEDCRQLVKEYYKSSVELDESMDQVTMEHSQAEYNPR----VDCKL 363 (491)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~ 363 (491)
++.-+.-||+++++.++-|-+|..+++..- -|.|+++-++||.. +.|+-
T Consensus 239 ~~~~~~cg~~~~~~~~~~~~~~~e~w~~~~--------~v~~~~a~~~~~~~~~~~~~c~~ 291 (345)
T KOG1632|consen 239 KLICDPCGLSDANKKFEICCDLCESWFHGD--------CVQIFEARKRLNEIRNEVYKCPH 291 (345)
T ss_pred cccccccCcchHHHHHHHHHHHHHHHhccc--------ccccccchhhhhhhhccceecCc
Confidence 344567899999999999999999999863 47788899999998 66653
No 9
>KOG1923|consensus
Probab=22.82 E-value=3.3e+02 Score=31.96 Aligned_cols=10 Identities=30% Similarity=0.757 Sum_probs=5.7
Q ss_pred cchhHHhhhc
Q psy16577 479 TGFKECIEYN 488 (491)
Q Consensus 479 ~~~~~~~~~~ 488 (491)
+.|++|.+|-
T Consensus 694 ~af~~~~~y~ 703 (830)
T KOG1923|consen 694 EAFEDVVEYF 703 (830)
T ss_pred HHHHhHhHhh
Confidence 4566666663
No 10
>COG1324 CutA Uncharacterized protein involved in tolerance to divalent cations [Inorganic ion transport and metabolism]
Probab=19.36 E-value=26 Score=31.27 Aligned_cols=38 Identities=29% Similarity=0.602 Sum_probs=0.0
Q ss_pred hhHHHHHhhhccCCCCCCCCCCC------CCCCCCCcchhhhhH
Q psy16577 386 KTMEAHYEQSLDNRSPVDNYNQP------VDGGNPEYNDVMDRQ 423 (491)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~ 423 (491)
||-+.||++.+..---.-+|.-| ||.|+++|.+-++..
T Consensus 59 KT~~~~~~~l~~~ikelHpYevPeIi~i~v~~g~~eYL~Wl~~~ 102 (104)
T COG1324 59 KTTSEKFEELIERIKELHPYEVPEIIALPVDNGLPEYLEWLNEE 102 (104)
T ss_pred EehHHhHHHHHHHHHHhCCCCCceEEEEEeccCCHHHHHHHHHh
Done!