Query psy16577
Match_columns 491
No_of_seqs 27 out of 29
Neff 2.2
Searched_HMMs 29240
Date Fri Aug 16 16:33:24 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16577.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/16577hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2c5k_P Vacuolar protein sortin 38.5 18 0.00061 24.8 2.1 17 319-335 6-22 (26)
2 2c5i_P Vacuolar protein sortin 21.0 26 0.0009 24.5 0.5 14 321-334 15-28 (29)
3 1k8t_A Calmodulin-sensitive ad 10.8 61 0.0021 34.2 0.4 27 20-46 37-63 (510)
4 1yrt_A Bifunctional hemolysin- 9.5 46 0.0016 33.8 -1.1 28 20-47 39-66 (364)
5 2pmr_A Uncharacterized protein 9.4 1.7E+02 0.0057 24.1 2.4 28 320-347 30-57 (87)
6 2kmu_A ATP-dependent DNA helic 9.1 2E+02 0.0067 22.1 2.5 23 313-335 28-50 (56)
7 2l69_A Rossmann 2X3 fold prote 9.0 68 0.0023 28.1 -0.1 26 297-322 9-34 (134)
8 1jy2_N Fibrinogen alpha chain; 8.5 1E+02 0.0036 24.0 0.8 18 316-333 35-52 (53)
9 1xfx_A Calmodulin-sensitive ad 8.1 74 0.0025 35.1 -0.3 45 20-69 304-348 (777)
10 3zsu_A TLL2057 protein, cyanoq 7.4 1.3E+02 0.0045 26.5 1.0 56 300-355 34-112 (130)
No 1
>2c5k_P Vacuolar protein sorting protein 51; protein transport/complex, snare, VFT complex, protein transport, phosphorylation; 2.05A {Saccharomyces cerevisiae}
Probab=38.48 E-value=18 Score=24.81 Aligned_cols=17 Identities=29% Similarity=0.600 Sum_probs=13.2
Q ss_pred hhhhHHHHHHHHHHHhh
Q psy16577 319 TKRQEDCRQLVKEYYKS 335 (491)
Q Consensus 319 ~~~~~~~~~~~~~~~~~ 335 (491)
.+-..|-|.|+||||+-
T Consensus 6 ~~~~KdKR~lLkeyY~L 22 (26)
T 2c5k_P 6 SSLNKDRRLLLREFYNL 22 (26)
T ss_dssp TTHHHHHHHHHHHHHHC
T ss_pred cccChHHHHHHHHHHhh
Confidence 34456889999999984
No 2
>2c5i_P Vacuolar protein sorting protein 51; protein transport/complex, snare, VFT complex, protein transport, phosphorylation; 2.3A {Saccharomyces cerevisiae}
Probab=20.98 E-value=26 Score=24.50 Aligned_cols=14 Identities=36% Similarity=0.740 Sum_probs=11.4
Q ss_pred hhHHHHHHHHHHHh
Q psy16577 321 RQEDCRQLVKEYYK 334 (491)
Q Consensus 321 ~~~~~~~~~~~~~~ 334 (491)
-..|-|.++||||+
T Consensus 15 ~~kdkR~~LkefY~ 28 (29)
T 2c5i_P 15 LNKDRRLLLREFYN 28 (29)
T ss_dssp HHHHHHHHHHTTTC
T ss_pred cChHHHHHHHHHhc
Confidence 34678899999997
No 3
>1k8t_A Calmodulin-sensitive adenylate cyclase; edema factor, adenylyl cyclase, anthrax, toxin,L; 2.60A {Bacillus anthracis} SCOP: e.41.1.1 PDB: 1k90_A* 1k93_A 1lvc_A* 1s26_A* 1sk6_A* 1pk0_A*
Probab=10.78 E-value=61 Score=34.25 Aligned_cols=27 Identities=19% Similarity=0.214 Sum_probs=14.8
Q ss_pred CCCCCCccccCCCCCCCCCCCCCCCCC
Q psy16577 20 GFRSDNAASVGFRSDNPASIGFRSDNP 46 (491)
Q Consensus 20 Gf~SdG~aS~GF~SdG~aS~Gf~pd~p 46 (491)
|+|++...++.-...|.+++||+=-++
T Consensus 37 gIRPVn~lATsLIesG~aTKGl~IKGK 63 (510)
T 1k8t_A 37 LFRPVNKLATNLIKSGVATKGLNVHGK 63 (510)
T ss_dssp EECCCCTTTHHHHHTTCEECCTTCCCC
T ss_pred EEecCCcchHHHHhcCCCCCCcccccc
Confidence 455555555555555566666644443
No 4
>1yrt_A Bifunctional hemolysin-adenylate cyclase; CYAA, layse, toxin; 2.10A {Bordetella pertussis} PDB: 1yru_A 1zot_A* 2col_A
Probab=9.51 E-value=46 Score=33.80 Aligned_cols=28 Identities=21% Similarity=0.241 Sum_probs=16.3
Q ss_pred CCCCCCccccCCCCCCCCCCCCCCCCCC
Q psy16577 20 GFRSDNAASVGFRSDNPASIGFRSDNPA 47 (491)
Q Consensus 20 Gf~SdG~aS~GF~SdG~aS~Gf~pd~pa 47 (491)
|+|++...++.-...|.+++||+=-+++
T Consensus 39 ~iRpVd~~aTsLIe~G~aTKG~~IKgKS 66 (364)
T 1yrt_A 39 MFRLVNPHSTSLIAEGVATKGLGVHAKS 66 (364)
T ss_dssp EEECCCHHHHHHHHTTCEECCTTCCSCC
T ss_pred EEecCCcchHHHHhcCCCCCCccccccc
Confidence 4555666666666666666666444443
No 5
>2pmr_A Uncharacterized protein; structural genomics, unknown function, PSI-2, protein struct initiative; 1.32A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.8.11.1
Probab=9.45 E-value=1.7e+02 Score=24.13 Aligned_cols=28 Identities=25% Similarity=0.230 Sum_probs=22.3
Q ss_pred hhhHHHHHHHHHHHhhccccccccchhh
Q psy16577 320 KRQEDCRQLVKEYYKSSVELDESMDQVT 347 (491)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (491)
...+++..+++.||+.+...-+.=|.||
T Consensus 30 ~~a~~~l~mA~~Y~~Da~~fl~kGD~v~ 57 (87)
T 2pmr_A 30 DDEEAVVERALNYRDDSVYYLEKGDHIT 57 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCHHH
Confidence 3678999999999998877766666665
No 6
>2kmu_A ATP-dependent DNA helicase Q4; recql4, DNA-replication, homeodomain-like, ATP-BIN cataract, craniosynostosis, disease mutation, dwarfism; NMR {Homo sapiens}
Probab=9.11 E-value=2e+02 Score=22.14 Aligned_cols=23 Identities=26% Similarity=0.440 Sum_probs=18.8
Q ss_pred cCccchhhhhHHHHHHHHHHHhh
Q psy16577 313 AGFNDITKRQEDCRQLVKEYYKS 335 (491)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~ 335 (491)
.+=+||...-++.+++-|+|++-
T Consensus 28 P~k~DIk~~p~~I~~~YK~Y~~L 50 (56)
T 2kmu_A 28 PSQDDVEAAPEETRALYREYRTL 50 (56)
T ss_dssp CCHHHHTTSCHHHHHHHHHHHHH
T ss_pred CCHHHHHcCHHHHHHHHHHHHHH
Confidence 34578888888899999999874
No 7
>2l69_A Rossmann 2X3 fold protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=9.04 E-value=68 Score=28.10 Aligned_cols=26 Identities=42% Similarity=0.526 Sum_probs=21.9
Q ss_pred CchhhhhhhhhhhhhccCccchhhhh
Q psy16577 297 SGGEERLEKFKIAVQDAGFNDITKRQ 322 (491)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (491)
|..||-|.|||-.+...||.--|-|.
T Consensus 9 stdeetlrkfkdiikkngfkvrtvrs 34 (134)
T 2l69_A 9 STDEETLRKFKDIIKKNGFKVRTVRS 34 (134)
T ss_dssp CCCHHHHHHHHHHHHHTTCEEEEECS
T ss_pred eCCHHHHHHHHHHHHhcCceEEEecC
Confidence 45689999999999999998777663
No 8
>1jy2_N Fibrinogen alpha chain; fragment E, disulfide bonds, asymmetry, coiled- coil, beta-sheet, blood clotting; 1.40A {Bos taurus} SCOP: h.1.8.1 PDB: 1jy3_N
Probab=8.47 E-value=1e+02 Score=23.97 Aligned_cols=18 Identities=28% Similarity=0.385 Sum_probs=13.4
Q ss_pred cchhhhhHHHHHHHHHHH
Q psy16577 316 NDITKRQEDCRQLVKEYY 333 (491)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~ 333 (491)
.|+++|.+..|+++.+|-
T Consensus 35 ~d~~~RI~kl~~~L~~~q 52 (53)
T 1jy2_N 35 QDFTSRINKLRDSLFNYQ 52 (53)
T ss_dssp HHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHhhc
Confidence 478999999999998874
No 9
>1xfx_A Calmodulin-sensitive adenylate cyclase; protein-protein interaction, lyase/metal binding protein complex; 3.20A {Bacillus anthracis} PDB: 1xfw_A* 1xfv_A 1xfy_A 1xfz_A 1y0v_A 1xfu_A
Probab=8.08 E-value=74 Score=35.08 Aligned_cols=45 Identities=20% Similarity=0.183 Sum_probs=0.0
Q ss_pred CCCCCCccccCCCCCCCCCCCCCCCCCCCcCCCCCCccccCCCCCCcccc
Q psy16577 20 GFRSDNAASVGFRSDNPASIGFRSDNPASVGFRSDNAASVGFRSDNAASV 69 (491)
Q Consensus 20 Gf~SdG~aS~GF~SdG~aS~Gf~pd~pas~Gf~p~~~as~GF~s~~~aS~ 69 (491)
|+|++...++.-...|.+++|| .-+|=-++--.-+||+|+....+
T Consensus 304 gIRPVn~lATSLIesG~aTKGL-----hIKGKSSDWGPqAGFIPvDQ~fS 348 (777)
T 1xfx_A 304 LFRPVNKLATNLIKSGVATKGL-----NVHGKSSDWGPVAGYIPFDQDLS 348 (777)
T ss_dssp EECCCCGGGHHHHHHTCEECCS-----SCCCCCCCSTTTTTSCBSSGGGS
T ss_pred EEecCCcchHHHHhcCCCCCCc-----ccccccCCCCCCccceecCHhhh
No 10
>3zsu_A TLL2057 protein, cyanoq; photosystem II assembly, photosynthesis, extrinsic protein; 1.60A {Thermosynechococcus elongatus}
Probab=7.42 E-value=1.3e+02 Score=26.51 Aligned_cols=56 Identities=16% Similarity=0.325 Sum_probs=0.0
Q ss_pred hhhhhhhhhhhhccCccchh-----------------------hhhHHHHHHHHHHHhhccccccccchhhhhcccccc
Q psy16577 300 EERLEKFKIAVQDAGFNDIT-----------------------KRQEDCRQLVKEYYKSSVELDESMDQVTMEHSQAEY 355 (491)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~-----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (491)
.+||...+--|++.-+.++. +-|...++|-|++++.-++||+.+.+-.-.-.+..|
T Consensus 34 r~Rl~eL~~lI~~~~W~~~Rn~IhGPlg~lr~~m~~l~~~Llp~dqk~A~~lak~l~~~L~~LD~AA~~~n~~~a~k~Y 112 (130)
T 3zsu_A 34 AERFADLEVSVAKGDWQEARNIMRGPLGEMLMDMRALNRNLLAKDQPTPTALTRALTDDFLKIDQGADLDSVTVAQEGF 112 (130)
T ss_dssp HTTHHHHHHHHHTTCHHHHHHHHHTHHHHHHHHHHHHHHTSCGGGSHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHhhcchHHHHHHHhchHHHHHHHHHHHHHhcCHhhHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Done!