Query psy16577
Match_columns 491
No_of_seqs 27 out of 29
Neff 2.2
Searched_HMMs 13730
Date Fri Aug 16 16:33:33 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16577.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/16577hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1v95a_ c.51.1.1 (A:) Nuclear 20.8 13 0.00093 31.2 0.7 25 356-380 6-30 (130)
2 d2b3ja1 c.97.1.2 (A:1-151) tRN 16.1 34 0.0025 27.0 2.3 25 311-335 118-147 (151)
3 d1jhfa1 a.4.5.2 (A:2-72) LexA 11.8 53 0.0038 23.4 2.1 31 318-348 3-36 (71)
4 d1k8ta_ e.41.1.1 (A:) Adenylyl 11.1 28 0.002 34.4 0.4 27 20-46 37-63 (509)
5 d1epba_ b.60.1.1 (A:) Retinoic 9.8 64 0.0046 24.1 2.0 39 293-331 116-158 (160)
6 d1z3aa1 c.97.1.2 (A:13-168) tR 8.0 84 0.0061 24.8 2.1 15 321-335 136-150 (156)
7 d1ucpa_ a.77.1.5 (A:) Apoptosi 7.2 1E+02 0.0076 22.9 2.2 38 299-336 16-63 (91)
8 d1ddfa_ a.77.1.2 (A:) Fas {Hum 6.6 72 0.0052 24.8 1.0 27 298-324 70-96 (127)
9 d1p6oa_ c.97.1.2 (A:) Cytosine 6.4 92 0.0067 25.1 1.6 34 296-336 113-146 (156)
10 d1ogmx1 b.133.1.1 (X:3-201) De 6.3 86 0.0063 27.3 1.4 30 345-374 94-123 (199)
No 1
>d1v95a_ c.51.1.1 (A:) Nuclear receptor coactivator 5 (KIAA1637) {Human (Homo sapiens) [TaxId: 9606]}
Probab=20.78 E-value=13 Score=31.18 Aligned_cols=25 Identities=36% Similarity=0.573 Sum_probs=22.2
Q ss_pred CCccceeeeeecCCccccccccccc
Q psy16577 356 NPRVDCKLLVENKSSVECDESVEHN 380 (491)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (491)
++-+||.++|-||...+--|.|||.
T Consensus 6 s~P~DCeIivvnk~~~~YAe~Ie~r 30 (130)
T d1v95a_ 6 SGPVDCSVIVVNKQTKDYAESVGRK 30 (130)
T ss_dssp CCCCTEEEEESSSGGGHHHHHHHHH
T ss_pred CCCcceEEEEECCccchHHHHHHHH
Confidence 6789999999999999988888874
No 2
>d2b3ja1 c.97.1.2 (A:1-151) tRNA adenosine deaminase TadA {Staphylococcus aureus [TaxId: 1280]}
Probab=16.12 E-value=34 Score=26.98 Aligned_cols=25 Identities=32% Similarity=0.699 Sum_probs=17.7
Q ss_pred hccCcc---chhh--hhHHHHHHHHHHHhh
Q psy16577 311 QDAGFN---DITK--RQEDCRQLVKEYYKS 335 (491)
Q Consensus 311 ~~~~~~---~~~~--~~~~~~~~~~~~~~~ 335 (491)
.++|+| +++. ..+.|++|++.|||.
T Consensus 118 ~~~~i~~~~~v~~Gvl~~e~~~L~~~Ff~~ 147 (151)
T d2b3ja1 118 QQSNFNHRAIVDKGVLKEACSTLLTTFFKN 147 (151)
T ss_dssp SCTTSSCCCEEECCTTHHHHHHHHHHHHHH
T ss_pred hhcCCCCCCEEEcCcCHHHHHHHHHHHHHH
Confidence 345655 3332 578999999999984
No 3
>d1jhfa1 a.4.5.2 (A:2-72) LexA repressor, N-terminal DNA-binding domain {Escherichia coli [TaxId: 562]}
Probab=11.82 E-value=53 Score=23.40 Aligned_cols=31 Identities=16% Similarity=0.282 Sum_probs=23.1
Q ss_pred hhhhhHHHHHHHHHHHhh---ccccccccchhhh
Q psy16577 318 ITKRQEDCRQLVKEYYKS---SVELDESMDQVTM 348 (491)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~ 348 (491)
+|+||...-+.+++||+. +..+.|-++.+-+
T Consensus 3 LT~rQ~~vL~~I~~~~~~~G~~Ps~rei~~~~g~ 36 (71)
T d1jhfa1 3 LTARQQEVFDLIRDHISQTGMPPTRAEIAQRLGF 36 (71)
T ss_dssp CCHHHHHHHHHHHHHHHHHSSCCCHHHHHHHTTC
T ss_pred CCHHHHHHHHHHHHHHHHhCCCCCHHHHHHHcCC
Confidence 699999999999999986 4555555554443
No 4
>d1k8ta_ e.41.1.1 (A:) Adenylylcyclase toxin (the edema factor) {Bacillus anthracis [TaxId: 1392]}
Probab=11.08 E-value=28 Score=34.36 Aligned_cols=27 Identities=19% Similarity=0.214 Sum_probs=13.9
Q ss_pred CCCCCCccccCCCCCCCCCCCCCCCCC
Q psy16577 20 GFRSDNAASVGFRSDNPASIGFRSDNP 46 (491)
Q Consensus 20 Gf~SdG~aS~GF~SdG~aS~Gf~pd~p 46 (491)
|+|++...++.-...|.+++||+=-++
T Consensus 37 gIRPVd~~STsLIesGyaTKGfhIKGK 63 (509)
T d1k8ta_ 37 LFRPVNKLATNLIKSGVATKGLNVHGK 63 (509)
T ss_dssp EECCCCTTTHHHHHTTCEECCTTCCCC
T ss_pred EEeCCCcchhhHHhcCCCCCCcccccc
Confidence 445555555555555555555544333
No 5
>d1epba_ b.60.1.1 (A:) Retinoic acid-binding protein {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=9.83 E-value=64 Score=24.13 Aligned_cols=39 Identities=23% Similarity=0.461 Sum_probs=30.8
Q ss_pred cccCCchhhhhhhhhhhhhccCccc---hh-hhhHHHHHHHHH
Q psy16577 293 ARRSSGGEERLEKFKIAVQDAGFND---IT-KRQEDCRQLVKE 331 (491)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~~~~~~~~~~~~ 331 (491)
+|...-..+-|++|+-.++..||+. |. ...+.|.+++|.
T Consensus 116 sR~~~~~~~~~~~f~~~~~~~G~~~~~i~~~~q~~~C~~~~~~ 158 (160)
T d1epba_ 116 SRSLDDNGEALYNFRKITSDHGFSETDLYILKHDLTCVKVLQS 158 (160)
T ss_dssp ESCSSCCHHHHHHHHHHHHHTTCCGGGEEECCCCCHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHHHcCCCHHHEEECCCCCcchhhhhc
Confidence 5777778899999999999999975 22 344689999874
No 6
>d1z3aa1 c.97.1.2 (A:13-168) tRNA adenosine deaminase TadA {Escherichia coli [TaxId: 562]}
Probab=7.99 E-value=84 Score=24.75 Aligned_cols=15 Identities=13% Similarity=0.751 Sum_probs=13.1
Q ss_pred hhHHHHHHHHHHHhh
Q psy16577 321 RQEDCRQLVKEYYKS 335 (491)
Q Consensus 321 ~~~~~~~~~~~~~~~ 335 (491)
..|+|++|++.||+.
T Consensus 136 l~ee~~~ll~~Ff~~ 150 (156)
T d1z3aa1 136 LADECAALLSDFFRM 150 (156)
T ss_dssp THHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHH
Confidence 578899999999974
No 7
>d1ucpa_ a.77.1.5 (A:) Apoptosis-associated speck-like protein Asc {Human (Homo sapiens) [TaxId: 9606]}
Probab=7.21 E-value=1e+02 Score=22.86 Aligned_cols=38 Identities=24% Similarity=0.474 Sum_probs=26.2
Q ss_pred hhhhhhhhhhhhhcc----Cccchhhhh------HHHHHHHHHHHhhc
Q psy16577 299 GEERLEKFKIAVQDA----GFNDITKRQ------EDCRQLVKEYYKSS 336 (491)
Q Consensus 299 ~~~~~~~~~~~~~~~----~~~~~~~~~------~~~~~~~~~~~~~~ 336 (491)
.++-|.+||.-+.|. |+.-|++-+ .|.-.|+-+||...
T Consensus 16 ~~~ElkkFK~~L~~~~l~~~~~~Ip~~~le~ad~~dladlLv~~y~~~ 63 (91)
T d1ucpa_ 16 TAEELKKFKLKLLSVPLREGYGRIPRGALLSMDALDLTDKLVSFYLET 63 (91)
T ss_dssp CHHHHHHHHHHTTTSCCCSSSCCCCHHHHHHCCHHHHHHHHHHTSCHH
T ss_pred cHHHHHHHHHHHCcccccccCCCCCHHHHhhCCHHHHHHHHHHHCCHH
Confidence 467899999988875 788886533 34555666777543
No 8
>d1ddfa_ a.77.1.2 (A:) Fas {Human (Homo sapiens) [TaxId: 9606]}
Probab=6.62 E-value=72 Score=24.79 Aligned_cols=27 Identities=11% Similarity=0.297 Sum_probs=18.5
Q ss_pred chhhhhhhhhhhhhccCccchhhhhHH
Q psy16577 298 GGEERLEKFKIAVQDAGFNDITKRQED 324 (491)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (491)
|-..-++.+.-|+.++|++||...-++
T Consensus 70 G~~at~~~L~~aL~~~~~~dlAeki~~ 96 (127)
T d1ddfa_ 70 GKKEAYDTLIKDLKKANLCTLAEKIQT 96 (127)
T ss_dssp CSSSHHHHHHHHHHHTTCSSHHHHHHH
T ss_pred CchhHHHHHHHHHHHcCcHHHHHHHHH
Confidence 334456666778888888888776554
No 9
>d1p6oa_ c.97.1.2 (A:) Cytosine deaminase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=6.43 E-value=92 Score=25.12 Aligned_cols=34 Identities=24% Similarity=0.478 Sum_probs=21.8
Q ss_pred CCchhhhhhhhhhhhhccCccchhhhhHHHHHHHHHHHhhc
Q psy16577 296 SSGGEERLEKFKIAVQDAGFNDITKRQEDCRQLVKEYYKSS 336 (491)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (491)
...|.+.|..-.|.| +--..+.|++|+++||+..
T Consensus 113 ~~~g~~~L~~~~~~v-------~~v~~~ec~~Ll~~Ff~~r 146 (156)
T d1p6oa_ 113 KSKGEKYLQTRGHEV-------VVVDDERCKKIMKQFIDER 146 (156)
T ss_dssp CCTHHHHHHHTTCEE-------EECCCHHHHHHHHHHHHHC
T ss_pred CcchHHHhhcCCeEE-------eeeCHHHHHHHHHHHHHHc
Confidence 345666665444433 2234689999999999763
No 10
>d1ogmx1 b.133.1.1 (X:3-201) Dextranase, N-terminal domain {Penicillium minioluteum [TaxId: 28574]}
Probab=6.31 E-value=86 Score=27.33 Aligned_cols=30 Identities=37% Similarity=0.471 Sum_probs=26.1
Q ss_pred hhhhhccccccCCccceeeeeecCCccccc
Q psy16577 345 QVTMEHSQAEYNPRVDCKLLVENKSSVECD 374 (491)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (491)
.++|..||-||.-.||.|++..+.+++.--
T Consensus 94 ~l~maWSsFeY~~Dv~vki~~~~Gssi~s~ 123 (199)
T d1ogmx1 94 GLNMAWSQFEYSHDVDVKILATDGSSLGSP 123 (199)
T ss_dssp TCEEEEEEEEESSCEEEEEEESSSCCCCCG
T ss_pred CcceehhheeeeccceEEEEeccCccccCc
Confidence 468999999999999999999998886543
Done!