RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy16577
(491 letters)
>gnl|CDD|107197 PHA02515, PHA02515, hypothetical protein; Provisional.
Length = 508
Score = 32.8 bits (74), Expect = 0.44
Identities = 41/170 (24%), Positives = 75/170 (44%), Gaps = 10/170 (5%)
Query: 63 SDNAASVGFRSDNPASMGFRSDNPASIGFRSDNPASVGFRSDNAASVGFRSDNAASVGFR 122
+DNAA++ + A++ + N +G + N V + NAA++ +DNA ++
Sbjct: 274 ADNAANINTVAGANANVNTVASNILDVGTVAGNIDDVQAVAGNAANINVVADNADNINAT 333
Query: 123 SDNPASMGFRSDNPASIGFRSDNPASVGFRSDNAVSVGFRSDNPAFVVFRSDNPASVGFR 182
+ N A++ N +I N A++ NA ++ + N V DN A V
Sbjct: 334 AANQANINAAVGNADNINAAVANQANINAVVGNANNINAVAANEGNVNTVVDNLADVQTV 393
Query: 183 SDNPASVGFRSDNPASVGFRSDN----PASVGFRSDNPASVGFRSDNPAS 228
+ A V ++N A+V ++ P + + +PAS NPA+
Sbjct: 394 AGIAADVSTVAENEAAVAALGNDLTGQPMVIDYGDLSPAS------NPAA 437
Score = 32.1 bits (72), Expect = 0.67
Identities = 38/170 (22%), Positives = 74/170 (43%), Gaps = 10/170 (5%)
Query: 23 SDNAASVGFRSDNPASIGFRSDNPASVGFRSDNAASVGFRSDNAASVGFRSDNPASMGFR 82
+DNAA++ + A++ + N VG + N V + NAA++ +DN ++
Sbjct: 274 ADNAANINTVAGANANVNTVASNILDVGTVAGNIDDVQAVAGNAANINVVADNADNINAT 333
Query: 83 SDNPASIGFRSDNPASVGFRSDNAASVGFRSDNAASVGFRSDNPASMGFRSDNPASIGFR 142
+ N A+I N ++ N A++ NA ++ + N ++ DN A +
Sbjct: 334 AANQANINAAVGNADNINAAVANQANINAVVGNANNINAVAANEGNVNTVVDNLADVQTV 393
Query: 143 SDNPASVGFRSDNAVSVGFRSDN----PAFVVFRSDNPASVGFRSDNPAS 188
+ A V ++N +V ++ P + + +PAS NPA+
Sbjct: 394 AGIAADVSTVAENEAAVAALGNDLTGQPMVIDYGDLSPAS------NPAA 437
Score = 30.1 bits (67), Expect = 2.8
Identities = 47/210 (22%), Positives = 89/210 (42%), Gaps = 10/210 (4%)
Query: 3 SDNSASVGFRSDKPASMGFRSDNAASVGFRSDNPASIGFRSDNPASVGFRSDNAASVGFR 62
++N V S +SM +++ SV + + +I +DN A++ + A+V
Sbjct: 234 AENIGDVSTVSTHLSSMLAVANDIDSVVSVAGDLENIDAVADNAANINTVAGANANVNTV 293
Query: 63 SDNAASVGFRSDNPASMGFRSDNPASIGFRSDNPASVGFRSDNAASVGFRSDNAASVGFR 122
+ N VG + N + + N A+I +DN ++ + N A++ NA ++
Sbjct: 294 ASNILDVGTVAGNIDDVQAVAGNAANINVVADNADNINATAANQANINAAVGNADNINAA 353
Query: 123 SDNPASMGFRSDNPASIGFRSDNPASVGFRSDNAVSVGFRSDNPAFVVFRSDNPASVGFR 182
N A++ N +I + N +V DN V + A V ++N A+V
Sbjct: 354 VANQANINAVVGNANNINAVAANEGNVNTVVDNLADVQTVAGIAADVSTVAENEAAVAAL 413
Query: 183 SDN----PASVGFRSDNPASVGFRSDNPAS 208
++ P + + +PAS NPA+
Sbjct: 414 GNDLTGQPMVIDYGDLSPAS------NPAA 437
>gnl|CDD|218539 pfam05287, PMG, PMG protein. This family consists of several mouse
anagen-specific protein mKAP13 (PMG1 and PMG2). PMG1 and
2 contain characteristic repeats reminiscent of the
keratin-associated proteins (KAPs). Both genes are
expressed in growing hair follicles in skin as well as
in sebaceous and eccrine sweat glands. Interestingly,
expression is also detected in the mammary epithelium
where it is limited to the onset of the pubertal growth
phase and is independent of ovarian hormones. Their
broad, developmentally controlled expression pattern,
together with their unique amino acid composition,
demonstrate that pmg-1 and pmg-2 constitute a novel KAP
gene family participating in the differentiation of all
epithelial cells forming the epidermal appendages.
Length = 175
Score = 28.6 bits (64), Expect = 5.0
Identities = 21/77 (27%), Positives = 37/77 (48%), Gaps = 8/77 (10%)
Query: 102 RSDNAASVGFRSDNAASVGFRSDNPASMGFRSDNPASIGFRSDNPASVGFRSDNAVSVGF 161
++ ++ S+GF S + S+G+ S + +G S GFR S GF+S + S
Sbjct: 98 QTTSSGSLGFVSSSCQSLGYGSRSCQPLGCGSS-----GFRPLGCGSKGFQSLSYGSSFC 152
Query: 162 RSDNPAFVVFRSDNPAS 178
R P+++ RS +
Sbjct: 153 R---PSYLSSRSYQSSC 166
Score = 28.6 bits (64), Expect = 5.6
Identities = 21/77 (27%), Positives = 36/77 (46%), Gaps = 8/77 (10%)
Query: 22 RSDNAASVGFRSDNPASIGFRSDNPASVGFRSDNAASVGFRSDNAASVGFRSDNPASMGF 81
++ ++ S+GF S + S+G+ S + +G S GFR S GF+S + S
Sbjct: 98 QTTSSGSLGFVSSSCQSLGYGSRSCQPLGCGSS-----GFRPLGCGSKGFQSLSYGSSFC 152
Query: 82 RSDNPASIGFRSDNPAS 98
R P+ + RS +
Sbjct: 153 R---PSYLSSRSYQSSC 166
Score = 28.6 bits (64), Expect = 5.7
Identities = 20/66 (30%), Positives = 30/66 (45%), Gaps = 5/66 (7%)
Query: 98 SVGFRSDNAASVGFRSDNAASVGFRSDNPASMGFRSDNPASIGFRSDNPASVGFRSDNAV 157
S+GF S + S+G+ S + +G S GFR S GF+S + S R
Sbjct: 104 SLGFVSSSCQSLGYGSRSCQPLGCGSS-----GFRPLGCGSKGFQSLSYGSSFCRPSYLS 158
Query: 158 SVGFRS 163
S ++S
Sbjct: 159 SRSYQS 164
Score = 28.2 bits (63), Expect = 6.6
Identities = 20/66 (30%), Positives = 31/66 (46%), Gaps = 5/66 (7%)
Query: 48 SVGFRSDNAASVGFRSDNAASVGFRSDNPASMGFRSDNPASIGFRSDNPASVGFRSDNAA 107
S+GF S + S+G+ S + +G S GFR S GF+S + S R +
Sbjct: 104 SLGFVSSSCQSLGYGSRSCQPLGCGSS-----GFRPLGCGSKGFQSLSYGSSFCRPSYLS 158
Query: 108 SVGFRS 113
S ++S
Sbjct: 159 SRSYQS 164
>gnl|CDD|178098 PLN02480, PLN02480, Probable pectinesterase.
Length = 343
Score = 28.6 bits (64), Expect = 7.3
Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 6/43 (13%)
Query: 153 SDNAVSVGFRSDNPAFVVFRSDNPASVGFRSDNPASVGFRSDN 195
SDNA S F + P FV F + R+D P + F S+N
Sbjct: 119 SDNAASATFTVEAPHFVAF------GISIRNDAPTGMAFTSEN 155
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.310 0.127 0.360
Gapped
Lambda K H
0.267 0.0664 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 23,446,967
Number of extensions: 2192681
Number of successful extensions: 1162
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1130
Number of HSP's successfully gapped: 31
Length of query: 491
Length of database: 10,937,602
Length adjustment: 101
Effective length of query: 390
Effective length of database: 6,457,848
Effective search space: 2518560720
Effective search space used: 2518560720
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 61 (27.4 bits)