RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy16577
(491 letters)
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 41.0 bits (95), Expect = 8e-04
Identities = 33/212 (15%), Positives = 62/212 (29%), Gaps = 65/212 (30%)
Query: 233 SDNPASVGFRSDNPASVG----FRSDNPTSVGFRSDNISSVGF-KSDNAVSVGFKSDNAA 287
D P V + NP + D DN V K + A
Sbjct: 316 QDLPREV--LTTNPRRLSIIAESIRDGLA----TWDNWKHVNCDKLTTIIESSLNVLEPA 369
Query: 288 EHNHSARRSSGGEERLEKFKIAVQDAGFNDIT----------KRQEDCRQLVKEYYKSS- 336
E+ + ++ + A I + D +V + +K S
Sbjct: 370 EY----------RKMFDRLSVFPPSA---HIPTILLSLIWFDVIKSDVMVVVNKLHKYSL 416
Query: 337 VELDESMDQVTMEHSQAEYNPRVDCKLLVENKSSVECDESVEHNQSMEHKTMEAHYEQSL 396
VE +++ S + +E K +E +E H ++H + ++
Sbjct: 417 VEKQPKESTISI-PS-----------IYLELKVKLE-NEYALHRSIVDHYNIPKTFDS-- 461
Query: 397 DNRSP--VDNYNQPVDGGNPEYNDVMDRQEYH 426
D+ P +D Y Y+ + +H
Sbjct: 462 DDLIPPYLDQYF---------YSHIG----HH 480
Score = 37.5 bits (86), Expect = 0.012
Identities = 28/197 (14%), Positives = 61/197 (30%), Gaps = 63/197 (31%)
Query: 339 LDESMDQVT------MEHSQAEYNPRVDCKLLVENKSSV----ECDESVEHNQSMEH--- 385
+D + + + + DCK + + S+ E D + ++
Sbjct: 7 MDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLR 66
Query: 386 ----------KTMEAHYEQSLD-------------NRSPVDNYNQPVDGGNPEYNDVMDR 422
+ ++ E+ L R P ++ + YND
Sbjct: 67 LFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDN--- 123
Query: 423 QEYHKQSV-----HYKLSMEA--EDKQAGDV---GRAIGFNES-LENE--RSIELNKQSM 469
Q + K +V + KL +A E + A +V G G ++ + + S ++ + M
Sbjct: 124 QVFAKYNVSRLQPYLKLR-QALLELRPAKNVLIDGVL-GSGKTWVALDVCLSYKV-QCKM 180
Query: 470 E--------GEYKRPDD 478
+ P+
Sbjct: 181 DFKIFWLNLKNCNSPET 197
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 37.0 bits (85), Expect = 0.018
Identities = 34/241 (14%), Positives = 64/241 (26%), Gaps = 94/241 (39%)
Query: 226 PASVGFRSDNPASV---GFRSDNPA-SVGFRSDN-PTSVGFRSDNISSVG-FKSDNAVSV 279
P + F AS F P + GF +D+ PT+ VG F +
Sbjct: 23 PTASFFI----ASQLQEQFNKILPEPTEGFAADDEPTTP------AELVGKF-------L 65
Query: 280 GFKSDNAAEHNHSARRSSGGEERLEKFKIAVQD--AGF---NDI-----------TKRQE 323
G+ S ++ L + + + + NDI
Sbjct: 66 GYVSSLVEPSKVGQF-----DQVL---NLCLTEFENCYLEGNDIHALAAKLLQENDTTLV 117
Query: 324 DCRQLVKEYYKSSVELDESMDQVT----MEHSQAE------------------------- 354
++L+K Y + + D+ +
Sbjct: 118 KTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLY 177
Query: 355 --YNPRVDCKLLVENKSSVECDESVEHNQSMEHKTMEAHYEQSLD--------NRSPVDN 404
Y+ V L++ S+ E + E + Q L+ + +P +
Sbjct: 178 QTYHVLV--GDLIKF-SAETLSELIRTTLD-----AEKVFTQGLNILEWLENPSNTPDKD 229
Query: 405 Y 405
Y
Sbjct: 230 Y 230
Score = 35.0 bits (80), Expect = 0.075
Identities = 52/299 (17%), Positives = 79/299 (26%), Gaps = 107/299 (35%)
Query: 158 SVG----FRSDNPAF-VVF-RSDN--PASVGFR-----SDNPASVGFRSDNPASVGFRSD 204
G + A V+ R+DN + GF +NP ++ R +
Sbjct: 1628 EQGMGMDLYKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIR-E 1686
Query: 205 NPASVGFRSDNPASVGFRSDNPASVGFRSDNPASVGFRSDN----------PASVGFRSD 254
N +++ F + + +++ S FRS+ PA
Sbjct: 1687 NYSAMIFETIVDGKLKTEKIFKEI----NEHSTSYTFRSEKGLLSATQFTQPALTL---- 1738
Query: 255 NPTSVG-FRSDNISSVGFKSDNAVSVGFKSDNAAEHNHSARRSSGGEERLEKFKIA-VQD 312
F + S G +A G HS GE + A
Sbjct: 1739 --MEKAAFED--LKSKGLIPADATFAG----------HSL-----GE-----YA-ALASL 1773
Query: 313 AGFNDITKRQEDCRQLVK---EYYKSSVELDES-MDQVTMEHSQAEYNP-RV-------D 360
A I E ++V + +V DE M NP RV
Sbjct: 1774 ADVMSI----ESLVEVVFYRGMTMQVAVPRDELGRSNYGM----IAINPGRVAASFSQEA 1825
Query: 361 CKLLVENKSSVECDESVEHNQSMEHKTMEAHYEQSLDNRSPVDNYN----QPVDGGNPE 415
+ +VE VE V NYN Q V G+
Sbjct: 1826 LQYVVERVGK-RTGWLVE----------------------IV-NYNVENQQYVAAGDLR 1860
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 33.8 bits (76), Expect = 0.060
Identities = 10/32 (31%), Positives = 16/32 (50%), Gaps = 4/32 (12%)
Query: 427 KQSVHYKLSMEAEDKQ-AGDVGRAIGFNESLE 457
KQ++ KL +A K A D A+ ++E
Sbjct: 19 KQALK-KL--QASLKLYADDSAPALAIKATME 47
>3us8_A Isocitrate dehydrogenase [NADP]; PSI-biology, structural genomics;
2.25A {Sinorhizobium meliloti}
Length = 427
Score = 29.7 bits (66), Expect = 2.3
Identities = 23/101 (22%), Positives = 37/101 (36%), Gaps = 11/101 (10%)
Query: 331 EYYKSSVEL-DESMDQVTMEHSQA--EYNPRVDCKLLVENKSSVECDESVEHNQSMEHKT 387
EYY VE D + DQVT++ + A ++ V C + ++ VE E K+
Sbjct: 63 EYYDLGVENRDATDDQVTIDAANAIKKHGVGVKCATITPDEGRVE-----EFKLKKMWKS 117
Query: 388 MEAHYEQSLDN---RSPVDNYNQPVDGGNPEYNDVMDRQEY 425
L R P+ N P ++ R +
Sbjct: 118 PNGTIRNILGGVIFREPIICKNVPRLVPGWTKPIIVGRHAF 158
>1zor_A Isocitrate dehydrogenase; wild type enzyme, CIS-proline,
thermostable, oxidoreductase; 2.24A {Thermotoga
maritima}
Length = 399
Score = 29.7 bits (66), Expect = 2.4
Identities = 24/101 (23%), Positives = 42/101 (41%), Gaps = 11/101 (10%)
Query: 331 EYYKSSVEL-DESMDQVTMEHSQA--EYNPRVDCKLLVENKSSVECDESVEHNQSMEHKT 387
Y+ ++ DE+ DQ+T+E ++A +Y V C + + V+ E+N K+
Sbjct: 40 VYFDLGIKKRDETDDQITIEAAKAIKKYGVGVKCATITPDAERVK-----EYNLKKAWKS 94
Query: 388 MEAHYEQSLD---NRSPVDNYNQPVDGGNPEYNDVMDRQEY 425
A LD R P+ N P + ++ R Y
Sbjct: 95 PNATIRAYLDGTVFRKPIMVKNVPPLVKRWKKPIIIGRHAY 135
>2qfy_A Isocitrate dehydrogenase [NADP]; rossmann fold, oxidoreductase;
HET: AKG; 2.10A {Saccharomyces cerevisiae} PDB: 2qfw_A*
2qfx_A* 2qfv_A*
Length = 427
Score = 28.6 bits (63), Expect = 5.2
Identities = 19/89 (21%), Positives = 36/89 (40%), Gaps = 13/89 (14%)
Query: 331 EYYKSSVEL-DESMDQVTMEHSQA--EYNPRVDCKLLVENKSSVECDESVEHNQSMEHKT 387
+YY SVE D + D++T + ++A +Y + C + +++ V+ E N K+
Sbjct: 55 KYYDLSVESRDATSDKITQDAAEAIKKYGVGIKCATITPDEARVK-----EFNLHKMWKS 109
Query: 388 MEAHYEQSLDN---RSP--VDNYNQPVDG 411
L R P + + V
Sbjct: 110 PNGTIRNILGGTVFREPIVIPRIPRLVPR 138
>2pqg_A Ribosome-inactivating protein 3; Pro-RIP, maize, hydrolase; 2.38A
{Zea mays} PDB: 2pqi_A 2pqj_A* 2k6h_A
Length = 265
Score = 28.3 bits (62), Expect = 5.7
Identities = 16/117 (13%), Positives = 32/117 (27%), Gaps = 2/117 (1%)
Query: 143 SDNPASVGFRSDNAVSVGFRSDNPAFVVFRSDNPASVGFRSDNPASVGFRSDNPASVGFR 202
+ ++ R DN VGFR+ + + DNP +GF +G +
Sbjct: 59 RTSSITLAIRMDNLYLVGFRTPGGVW--WEFGKDGDTHLLGDNPRWLGFGGRYQDLIGNK 116
Query: 203 SDNPASVGFRSDNPASVGFRSDNPASVGFRSDNPASVGFRSDNPASVGFRSDNPTSV 259
++G A + + + + +D
Sbjct: 117 GLETVTMGRAEMTRAVNDLAKKKKMATLEEEEVQMQMQMPEAADLAAAAAADPQADT 173
>3mvg_A IRIP, ribosome inactivating type 1 protein; ribosome inactivating
protein type I, PI-loop, hydrola; HET: GOL; 1.25A {Iris
hollandica}
Length = 275
Score = 27.8 bits (61), Expect = 7.1
Identities = 12/53 (22%), Positives = 22/53 (41%), Gaps = 2/53 (3%)
Query: 142 RSDNPASVGFRSDNAVSVGFRSDNPAFVVFRSDNPASVGFRSDNPASVGFRSD 194
+ P ++ NA V +++ N + SD PA+ +NP + F
Sbjct: 57 WGNRPITLVLNRVNAYVVAYQAQNRFY--LLSDTPANPQVYGNNPHRLTFTGS 107
>4aoy_A Isocitrate dehydrogenase [NADP]; oxidoreductase, temperature
adaptation, thermophilic, psychr NADP+ selectivity,
domain movements; 2.35A {Clostridium thermocellum} PDB:
4aou_A
Length = 402
Score = 28.2 bits (62), Expect = 7.6
Identities = 21/70 (30%), Positives = 32/70 (45%), Gaps = 8/70 (11%)
Query: 331 EYYKSSVEL-DESMDQVTMEHSQA--EYNPRVDCKLLVENKSSVECDESVEHNQSMEHKT 387
EYY +E D++ DQVT++ ++A +Y V C + N VE E+N K+
Sbjct: 40 EYYDLGLENRDKTEDQVTIDAARAIQKYGVGVKCATITPNAQRVE-----EYNLKKMWKS 94
Query: 388 MEAHYEQSLD 397
LD
Sbjct: 95 PNGTIRAILD 104
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.310 0.127 0.360
Gapped
Lambda K H
0.267 0.0507 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 6,745,455
Number of extensions: 392123
Number of successful extensions: 456
Number of sequences better than 10.0: 1
Number of HSP's gapped: 445
Number of HSP's successfully gapped: 21
Length of query: 491
Length of database: 6,701,793
Length adjustment: 97
Effective length of query: 394
Effective length of database: 3,993,456
Effective search space: 1573421664
Effective search space used: 1573421664
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 59 (27.0 bits)