RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy16577
         (491 letters)



>d1t16a_ f.4.3.4 (A:) Long-chain fatty acid transport protein FadL
           {Escherichia coli [TaxId: 562]}
          Length = 427

 Score = 31.9 bits (71), Expect = 0.17
 Identities = 24/196 (12%), Positives = 56/196 (28%), Gaps = 7/196 (3%)

Query: 57  ASVGFRSDNAASVGFRSDNPASMGFRSDNPASIGFRSDNPASVGFRSDNAASVGFRSDNA 116
           +  G  +D+A +V     NPA +        S G    +P  V     + +    ++DN 
Sbjct: 18  SGEGAIADDAGNVSR---NPALITMFDRPTFSAGAVYIDP-DVNISGTSPSGRSLKADNI 73

Query: 117 ASVGFRSDNPASMGFRSDNPASIGFRSDNPASVGFRSDNAVSVGFRSDNPAFVVFRSDNP 176
           A   +  +         ++    G    +   +    ++  + G             +  
Sbjct: 74  APTAWVPN--MHFVAPINDQFGWGASITSNYGLATEFNDTYAGGSVGGTTDLETMNLNLS 131

Query: 177 ASVGFRSDNPASVGFRSD-NPASVGFRSDNPASVGFRSDNPASVGFRSDNPASVGFRSDN 235
            +    +     +GF +    A +   + +   +       +  G      A     +  
Sbjct: 132 GAYRLNNAWSFGLGFNAVYARAKIERFAGDLGQLVAGQIMQSPAGQTQQGQALAATANGI 191

Query: 236 PASVGFRSDNPASVGF 251
            ++      N    GF
Sbjct: 192 DSNTKIAHLNGNQWGF 207



 Score = 28.1 bits (61), Expect = 2.7
 Identities = 25/243 (10%), Positives = 64/243 (26%), Gaps = 6/243 (2%)

Query: 16  PASMGFRSDNAASVGFRSDNPASIGFRSDNPASVGFRSDNAASVGFRSDNAASVGFRSDN 75
           PA +        S G    +P  +     +P+    ++DN A   +            ++
Sbjct: 34  PALITMFDRPTFSAGAVYIDP-DVNISGTSPSGRSLKADNIAPTAW--VPNMHFVAPIND 90

Query: 76  PASMGFRSDNPASIGFRSDNPASVGFRSDNAASVGFRSDNAASVGFRSDNPASMGFRSD- 134
               G    +   +    ++  + G             + + +    +     +GF +  
Sbjct: 91  QFGWGASITSNYGLATEFNDTYAGGSVGGTTDLETMNLNLSGAYRLNNAWSFGLGFNAVY 150

Query: 135 NPASIGFRSDNPASVGFRSDNAVSVGFRSDNPAFVVFRSDNPASVGFRSDNPASVGFRSD 194
             A I   + +   +          G      A     +   ++      N    GF  +
Sbjct: 151 ARAKIERFAGDLGQLVAGQIMQSPAGQTQQGQALAATANGIDSNTKIAHLNGNQWGFGWN 210

Query: 195 NPASVGFRSDNPASVGFRSDNPASVGFRSDNPASVGFRSDNPASVGFRSDNPASVGFRSD 254
             A + +  D          +   + F+ +  + +    +N       +   A+      
Sbjct: 211 --AGILYELDKNNRYALTYRSEVKIDFKGNYSSDLNRAFNNYGLPIPTATGGATQSGYLT 268

Query: 255 NPT 257
              
Sbjct: 269 LNL 271



 Score = 27.3 bits (59), Expect = 5.5
 Identities = 17/136 (12%), Positives = 41/136 (30%), Gaps = 6/136 (4%)

Query: 127 ASMGFRSDNPASIGFRSDNPASVGFRSDNAVSVGFRSDNPAFVVFRSDNPASVGFRSDNP 186
           +  G  +D+  ++     NPA +        S G    +P  V     +P+    ++DN 
Sbjct: 18  SGEGAIADDAGNVSR---NPALITMFDRPTFSAGAVYIDPD-VNISGTSPSGRSLKADNI 73

Query: 187 ASVGFRSDNPASVGFRSDNPASVGFRSDNPASVGFRSDNPASVGFRSDNPASVGFRSDNP 246
           A   +  +         ++    G    +   +    ++  + G             +  
Sbjct: 74  APTAWVPN--MHFVAPINDQFGWGASITSNYGLATEFNDTYAGGSVGGTTDLETMNLNLS 131

Query: 247 ASVGFRSDNPTSVGFR 262
            +    +     +GF 
Sbjct: 132 GAYRLNNAWSFGLGFN 147


>d1j0pa_ a.138.1.1 (A:) Cytochrome c3 {Desulfovibrio vulgaris
           [TaxId: 881]}
          Length = 108

 Score = 28.3 bits (62), Expect = 0.74
 Identities = 11/77 (14%), Positives = 31/77 (40%), Gaps = 6/77 (7%)

Query: 337 VELDESMDQVTMEHSQAEYNPRVDC------KLLVENKSSVECDESVEHNQSMEHKTMEA 390
           +++D++   V   HS  +     DC      K  ++  ++  C ++++           A
Sbjct: 10  LKMDKTKQPVVFNHSTHKAVKCGDCHHPVNGKEDLQKCATAGCHDNMDKKDKSAKGYYHA 69

Query: 391 HYEQSLDNRSPVDNYNQ 407
            +++    +S V  + +
Sbjct: 70  MHDKGTKFKSCVGCHLE 86


>d2fgqx1 f.4.3.1 (X:3-332) Porin {Comamonas acidovorans [TaxId:
           80866]}
          Length = 330

 Score = 29.0 bits (64), Expect = 1.2
 Identities = 23/157 (14%), Positives = 39/157 (24%), Gaps = 14/157 (8%)

Query: 40  GFRSDNPASVGFRSDNAASVGFRSDNAASVGFRSDNPASMGFRSDNP-ASIGFRSDNPAS 98
               D+  + GF     ++V    +       R   P S    S +  ++ G        
Sbjct: 58  EIFGDDGNASGFNFKRRSTVSLSGNFGEVRLGRDLVPTSQKLTSYDLFSATGIGPFMGFR 117

Query: 99  VGFRSDNAASVGFRSDNAASVGFRSDNPASMGFRSDNPASIGFRSDNPASVGFRSDNAVS 158
                  A   G R++N   + + + N               F               + 
Sbjct: 118 NWAAGQGADDNGIRANN--LISYYTPNFGGFNAGFG----YAFDEKQTIGTADSVGRYIG 171

Query: 159 VGFRSDNPAFVVFRSDNPASVGFRSDNPASVGFRSDN 195
                DN           AS+G      A  G  +D 
Sbjct: 172 GYVAYDNGPLS-------ASLGLAQQKTAVGGLATDR 201


>d1ggpa_ d.165.1.1 (A:) Lectin 1 A-chain {Mongolian snake-gourd
           (Trichosanthes kirilowii) [TaxId: 3677]}
          Length = 234

 Score = 27.1 bits (60), Expect = 4.5
 Identities = 12/53 (22%), Positives = 20/53 (37%), Gaps = 1/53 (1%)

Query: 143 SDNPASVGFRSDNAVSVGFRS-DNPAFVVFRSDNPASVGFRSDNPASVGFRSD 194
           +D   SV     N   V +R+  N  F      +  S  F   +  ++GF + 
Sbjct: 47  TDEEVSVAVDVTNLAVVAYRAGSNSYFHAAAPGSSLSHLFSRSSQHTLGFDNT 99


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.310    0.127    0.360 

Gapped
Lambda     K      H
   0.267   0.0475    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,598,313
Number of extensions: 68406
Number of successful extensions: 150
Number of sequences better than 10.0: 1
Number of HSP's gapped: 126
Number of HSP's successfully gapped: 13
Length of query: 491
Length of database: 2,407,596
Length adjustment: 89
Effective length of query: 402
Effective length of database: 1,185,626
Effective search space: 476621652
Effective search space used: 476621652
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 55 (25.6 bits)