Psyllid ID: psy16578

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------
Protein Sequence
MRLSSIQPPSTDLLNLITNKRTASSDLLNLITNKRTASSSEDKPAGEDVFACPKCSKTYLRQYTLNAHLRYECGKRPKFKCPHCNKKCHQKCNLKSHIALKHDQLLAPLAPRSYRRNSQLNGSFICPKCSNRYVYKHNLKQHLKFECGVEPQFKCPYCDKRCKLKGNLMSHIALKHT
Secondary Structure (PSIPRED)
ccccccccccHHHHcccccccccccccccccccccccHHHccccccccccccccccccccccccHHHHHHcccccccccccccccccccccccHHHHHHcccccccccccccccccccccccccccccccccccccccHHHHHcccccccccccccccccccccccHHHHHHccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccccccccccEccccHHHHHccccccccccccccccccEccccHHHHHHHHcccccccccccccccccccccccHHHHHHccccEEccHHcHHHHHHccccccccccHccccEccccHHHHHHHHcccccccccccHccccEccccHHHHHHHHccc
Coil and Loop (DISEMBL)
mrlssiqppstdLLNLITNKRTASSDLLNLITnkrtasssedkpagedvfacpkcsktYLRQYTLNAHLRyecgkrpkfkcphcnkkchqkcnlkshialkhdqllaplaprsyrrnsqlngsficpkcsnryvykHNLKQHLkfecgvepqfkcpycdkrcklkgnlmshialkht
Flexible Loop (DISEMBL)
mrlssiqppsTDLLNLITNKRTASSDLLNLITNKrtasssedkpagedVFACPKCSKTYLRQYTLNAHLRYECGKRPKFKCPHCNKKCHQKCNLKSHIALKHDQLLAPLAPRSYRRNSQLNGSFICPKCSNRYVYKHNLKQHLKFECGVEPQFKCPYCDKRCKLKgnlmshialkht
Low Complexity Region (SEG)
MRLSSIQPPSTDLLNLITNKRTASSDLLNLITNKRTASSSEDKPAGEDVFACPKCSKTYLRQYTLNAHLRYECGKRPKFKCPHCNKKCHQKCNLKSHIALKHDQLLAPLAPRSYRRNSQLNGSFICPKCSNRYVYKHNLKQHLKFECGVEPQFKCPYCDKRCKLKGNLMSHIALKHT
Disordered region (IsUnstruct)
***********************************************DVFACPKCSKTYLRQYTLNAHLRYECGKRPKFKCPHCNKKCHQKCNLKSHIALKHDQLLAPLAPRSYRRNSQLNGSFICPKCSNRYVYKHNLKQHLKFECGVEPQFKCPYCDKRCKLKGNLMSHI*****
Disordered Region (DISOPRED)
*R**************ITNKRTASSDLLNLITNKRTASSSEDKPAGEDVFACPKCSKTYLRQYTLNAHLRYECGKRPKFKCPHCNKKCHQKCNLKSHIALKHDQLLAPLAPRSYRRNSQLNGSFICPKCSNRYVYKHNLKQHLKFECGVEPQFKCPYCDKRCKLKGNLMSHIAL*H*
Disordered Region (DISEMBL)
********PSTDLLNLITNKRTASSDLLNLITNKR***********EDVFACPKCSKTYLRQYTLNAHLRYECGKRPKFKCPHCNKKCHQKCNLKSHIALKHDQLLAPLAPRSYRRNSQLNGSFICPKCSNRYVYKHNLKQHLKFECGVEPQFKCPYCDKRCKLKGNLMSHIALKHT
Disordered Region (DISPRO)
*******************KRTASSDLLNLITNKRTASSSEDKPAGEDVFACPKCSKTYLRQYTLNAHLRYECGKRPKFKCPHCNKKCHQKCNLKSHIALKHDQLLAPLAPRSYRRNSQLNGSFICPKCSNRYVYKHNLKQHLKFECGVEPQFKCPYCDKRCKLKGNLMSH******
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MRLSSIQPPSTDLLNLITNKRTASSDLLNLITNKRTASSSEDKPAGEDVFACPKCSKTYLRQYTLNAHLRYECGKRPKFKCPHCNKKCHQKCNLKSHIALKHDQLLAPLAPRSYRRNSQLNGSFICPKCSNRYVYKHNLKQHLKFECGVEPQFKCPYCDKRCKLKGNLMSHIALKHT
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	177	2.2.26 [Sep-21-2011]
Q9NPA5	681	Zinc finger protein 64 ho	no	N/A	0.734	0.190	0.314	1e-12
Q8BV42	777	Zinc finger protein 786 O	no	N/A	0.627	0.142	0.330	2e-12
Q9N003	741	Zinc finger protein 425 (	N/A	N/A	0.728	0.174	0.307	1e-11
Q8N393	782	Zinc finger protein 786 O	no	N/A	0.706	0.159	0.338	2e-11
Q6IV72	752	Zinc finger protein 425 O	no	N/A	0.723	0.170	0.309	2e-11
Q9NTW7	645	Zinc finger protein 64 ho	no	N/A	0.740	0.203	0.326	8e-11
Q99KE8	643	Zinc finger protein 64 OS	no	N/A	0.740	0.203	0.326	1e-10
P18737	196	Gastrula zinc finger prot	N/A	N/A	0.706	0.637	0.305	5e-10
Q0VCC5	559	Replication initiator 1 O	no	N/A	0.677	0.214	0.300	5e-10
O75467	553	Zinc finger protein 324A	no	N/A	0.706	0.226	0.297	5e-10

>sp|Q9NPA5|ZF64A_HUMAN Zinc finger protein 64 homolog, isoforms 1 and 2 OS=Homo sapiens GN=ZFP64 PE=1 SV=3

 Score = 72.8 bits (177), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 45/143 (31%), Positives = 72/143 (50%), Gaps = 13/143 (9%)

Query: 46  GEDVFACPKCSKTYLRQYTLNAHLRYECGKRPKFKCPHCNKKCHQKCNLKSHIALKHDQ- 104
           G+    C  C K + R+  L  H+R   G +P +KC  C+       +L  H+ +  D+ 
Sbjct: 171 GDKPHKCEVCGKCFSRKDKLKTHMRCHTGVKP-YKCKTCDYAAADSSSLNKHLRIHSDER 229

Query: 105 -LLAPLAPRSYRRNSQL---------NGSFICPKCSNRYVYKHNLKQHLKFECGVEPQFK 154
                + P + R +SQL         +  F C  CS ++    +LK+H++   G +P FK
Sbjct: 230 PFKCQICPYASRNSSQLTVHLRSHTGDAPFQCWLCSAKFKISSDLKRHMRVHSGEKP-FK 288

Query: 155 CPYCDKRCKLKGNLMSHIALKHT 177
           C +C+ RC +KGNL SHI +KH+
Sbjct: 289 CEFCNVRCTMKGNLKSHIRIKHS 311

May be involved in transcriptional regulation.
Homo sapiens (taxid: 9606)

>sp|Q8BV42|ZN786_MOUSE Zinc finger protein 786 OS=Mus musculus GN=Znf786 PE=2 SV=1

 Score = 71.6 bits (174), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 43/130 (33%), Positives = 62/130 (47%), Gaps = 19/130 (14%)

Query: 45  AGEDVFACPKCSKTYLRQYTLNAHLRYECGKRPKFKCPHCNKKCHQKCNLKSHIALKHDQ 104
            GE  F+C +C + +  Q  L  HLR   G+RP F+CP C+K    K  LK+H       
Sbjct: 499 GGERPFSCSECGRAFTHQCKLREHLRVHSGERP-FQCPECHKSFRLKGVLKAH------- 550

Query: 105 LLAPLAPRSYRRNSQLNGSFICPKCSNRYVYKHNLKQHLKFECGVEPQFKCPYCDKRCKL 164
                     +R       F C +C   ++ +  L +H +   G  P F+CP CD+R +L
Sbjct: 551 ----------QRIHSKERPFSCGECGKGFIRQSKLTEHFRVHSGERP-FQCPECDRRFRL 599

Query: 165 KGNLMSHIAL 174
           KG L+SH  L
Sbjct: 600 KGQLLSHQRL 609

May be involved in transcriptional regulation.

Mus musculus (taxid: 10090)

>sp|Q9N003|ZN425_MACFA Zinc finger protein 425 (Fragment) OS=Macaca fascicularis GN=ZNF425 PE=2 SV=2

 Score = 68.9 bits (167), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 44/143 (30%), Positives = 74/143 (51%), Gaps = 14/143 (9%)

Query: 46  GEDVFACPKCSKTYLRQYTLNAHLRYECGKRPKFKCPHCNKKCHQKCNLKSHIALKHDQ- 104
           GE  F C +C + +++Q  L  HLR   G++P F+CP C++    K  +K H++    + 
Sbjct: 287 GERPFCCGECGRAFVQQCELTEHLRLHSGEKP-FQCPQCDRCFRLKRGMKVHLSQHSGKR 345

Query: 105 -LLAPLAPRSYRRNSQL---------NGSFICPKCSNRYVYKHNLKQHLKFECGVEPQFK 154
               P   RS+ R + L            F C +C  +++YK  L +H++   G +P F 
Sbjct: 346 PFHCPECGRSFSRKAALKTHQRTHSEEKPFSCDECGRKFIYKIKLDEHIRVHTGEKP-FS 404

Query: 155 CPYCDKRCKLKGNLMSHIALKHT 177
           CP C+K  +LK +L +H  L+H+
Sbjct: 405 CPECNKSFRLKRSLKAH-GLQHS 426

Acts as a transcriptional repressor.

Macaca fascicularis (taxid: 9541)

>sp|Q8N393|ZN786_HUMAN Zinc finger protein 786 OS=Homo sapiens GN=ZNF786 PE=2 SV=2

 Score = 68.9 bits (167), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 47/139 (33%), Positives = 66/139 (47%), Gaps = 14/139 (10%)

Query: 47  EDVFACPKCSKTYLRQYTLNAHLRYECGKRPKFKCPHCNKKCHQKCNLKSHIALKHDQ-- 104
           E  F+C +C K + RQ  L  HLR   G+RP F+CP CN+    K  L SH  L   +  
Sbjct: 562 ERPFSCGECGKGFTRQSKLTEHLRVHSGERP-FQCPECNRSFRLKGQLLSHQRLHTGERP 620

Query: 105 LLAPLAPRSYRRNSQLNG---------SFICPKCSNRYVYKHNLKQHLKFECGVEPQFKC 155
              P   + YR  + +            F C +C   +V    L +H++   G +P F+C
Sbjct: 621 FQCPECDKRYRVKADMKAHQLLHSGEMPFSC-ECGKGFVKHSKLIEHIRTHTGEKP-FQC 678

Query: 156 PYCDKRCKLKGNLMSHIAL 174
           P CDK  +LK  L+SH  L
Sbjct: 679 PKCDKSFRLKAQLLSHQGL 697

May be involved in transcriptional regulation.

Homo sapiens (taxid: 9606)

>sp|Q6IV72|ZN425_HUMAN Zinc finger protein 425 OS=Homo sapiens GN=ZNF425 PE=2 SV=1

 Score = 68.2 bits (165), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 44/142 (30%), Positives = 72/142 (50%), Gaps = 14/142 (9%)

Query: 46  GEDVFACPKCSKTYLRQYTLNAHLRYECGKRPKFKCPHCNKKCHQKCNLKSHIALKHDQ- 104
           GE  F C +C + +++Q  L  HLR   G++P F+CP C++    K  +K H+     + 
Sbjct: 298 GERPFCCGECGRAFVQQCELTEHLRLHSGEKP-FQCPQCDRCFRLKRGMKVHLTQHSGKR 356

Query: 105 -LLAPLAPRSYRRNSQL---------NGSFICPKCSNRYVYKHNLKQHLKFECGVEPQFK 154
               P   RS+ R + L            F C +C  +++YK  L +H++   G +P F 
Sbjct: 357 PFHCPECGRSFSRKAALKTHQRTHSEEKPFSCGECGRKFIYKIKLDEHIRVHTGEKP-FS 415

Query: 155 CPYCDKRCKLKGNLMSHIALKH 176
           CP C+K  +LK +L +H  L+H
Sbjct: 416 CPECNKSFRLKRSLKAH-GLQH 436

Acts as a transcriptional repressor.

Homo sapiens (taxid: 9606)

>sp|Q9NTW7|ZF64B_HUMAN Zinc finger protein 64 homolog, isoforms 3 and 4 OS=Homo sapiens GN=ZFP64 PE=2 SV=3

 Score = 66.6 bits (161), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 47/144 (32%), Positives = 69/144 (47%), Gaps = 13/144 (9%)

Query: 45  AGEDVFACPKCSKTYLRQYTLNAHLRYECGKRPKFKCPHCNKKCHQKCNLKSHIALKHDQ 104
            G+    C  C K + R+  L  H+R     +P  KC  C+       +LK H+ +  D+
Sbjct: 325 TGDKPHKCEFCDKCFSRKDNLTMHMRCHTSVKP-HKCHLCDYAAVDSSSLKKHLRIHSDE 383

Query: 105 --LLAPLAPRSYRRNSQL---------NGSFICPKCSNRYVYKHNLKQHLKFECGVEPQF 153
                 L P + R +SQL         +  F C  CS ++    +LK+H+    G +P F
Sbjct: 384 RPYKCQLCPYASRNSSQLTVHLRSHTGDTPFQCWLCSAKFKISSDLKRHMIVHSGEKP-F 442

Query: 154 KCPYCDKRCKLKGNLMSHIALKHT 177
           KC +CD RC +K NL SHI +KHT
Sbjct: 443 KCEFCDVRCTMKANLKSHIRIKHT 466

May be involved in transcriptional regulation.

Homo sapiens (taxid: 9606)

>sp|Q99KE8|ZFP64_MOUSE Zinc finger protein 64 OS=Mus musculus GN=Zfp64 PE=2 SV=1

 Score = 66.2 bits (160), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 47/144 (32%), Positives = 69/144 (47%), Gaps = 13/144 (9%)

Query: 45  AGEDVFACPKCSKTYLRQYTLNAHLRYECGKRPKFKCPHCNKKCHQKCNLKSHIALKHDQ 104
            G+    C  C K + R+  L  H+R     +P  KC  C+       +LK H+ +  D+
Sbjct: 323 TGDKPHKCEFCDKCFSRKDNLTMHMRCHTSVKP-HKCHLCDYAAVDSSSLKKHLRIHSDE 381

Query: 105 --LLAPLAPRSYRRNSQL---------NGSFICPKCSNRYVYKHNLKQHLKFECGVEPQF 153
                 L P + R +SQL         +  F C  CS ++    +LK+H+    G +P F
Sbjct: 382 RPYKCQLCPYASRNSSQLTVHLRSHTGDTPFQCWLCSAKFKISSDLKRHMIVHSGEKP-F 440

Query: 154 KCPYCDKRCKLKGNLMSHIALKHT 177
           KC +CD RC +K NL SHI +KHT
Sbjct: 441 KCEFCDVRCTMKANLKSHIRIKHT 464

May be involved in transcriptional regulation.

Mus musculus (taxid: 10090)

>sp|P18737|ZG8_XENLA Gastrula zinc finger protein XlCGF8.2DB (Fragment) OS=Xenopus laevis PE=3 SV=1

 Score = 63.9 bits (154), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 44/144 (30%), Positives = 64/144 (44%), Gaps = 19/144 (13%)

Query: 31  ITNKRTASSSEDKPAGEDVFACPKCSKTYLRQYTLNAHLRYECGKRPKFKCPHCNKKCHQ 90
            T KR  +S      GE  F+C +C K + ++  L +HL    G++P F C  C K   Q
Sbjct: 15  FTQKRNLASHMTIHTGEKPFSCTECGKGFTQKRNLASHLTIHTGEKP-FPCTECGKGFTQ 73

Query: 91  KCNLKSHIALKHDQLLAPLAPRSYRRNSQLNGSFICPKCSNRYVYKHNLKQHLKFECGVE 150
           K NL SH+ +   +                   F C +C   + +KH L  HLK   G +
Sbjct: 74  KSNLVSHMKIHTGEK-----------------PFTCTECGKEFAHKHRLLGHLKIHTGEK 116

Query: 151 PQFKCPYCDKRCKLKGNLMSHIAL 174
           P F C  C K    K +L+SH+ +
Sbjct: 117 P-FSCTECGKHFAHKYHLVSHMKI 139

May be involved in transcriptional regulation.

Xenopus laevis (taxid: 8355)

>sp|Q0VCC5|REPI1_BOVIN Replication initiator 1 OS=Bos taurus GN=REPIN1 PE=2 SV=1

 Score = 63.9 bits (154), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 43/143 (30%), Positives = 64/143 (44%), Gaps = 23/143 (16%)

Query: 45  AGEDVFACPKCSKTYLRQYTLNAHLRYECGKRPKFKCPHCNKKCHQKCNLKSHI------ 98
            GE  FAC +C K + ++  L AH R   G+RP F C  C ++  Q  +L +H       
Sbjct: 390 GGERPFACAECGKHFGKKTHLVAHSRVHSGERP-FACEECGRRFSQGSHLAAHRRDHAPE 448

Query: 99  ----------ALKHDQLLAPLAPRSYRRNSQLNGSFICPKCSNRYVYKHNLKQHLKFECG 148
                     A +H   LA     ++RR       ++CP+C   +  K NL  H +   G
Sbjct: 449 RPFVCPDCGKAFRHKPYLA-----AHRRIHTGEKPYVCPECGKAFSQKSNLVSHRRIHTG 503

Query: 149 VEPQFKCPYCDKRCKLKGNLMSH 171
             P + CP CD+    K NL++H
Sbjct: 504 ERP-YACPDCDRSFSQKSNLITH 525

Sequence-specific double-stranded DNA-binding protein required for initiation of chromosomal DNA replication. Binds on 5'-ATT-3' reiterated sequences downstream of the origin of bidirectional replication (OBR) and a second, homologous ATT sequence of opposite orientation situated within the OBR zone. Facilitates DNA bending.

Bos taurus (taxid: 9913)

>sp|O75467|Z324A_HUMAN Zinc finger protein 324A OS=Homo sapiens GN=ZNF324 PE=2 SV=1

 Score = 63.9 bits (154), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 41/138 (29%), Positives = 62/138 (44%), Gaps = 13/138 (9%)

Query: 45  AGEDVFACPKCSKTYLRQYTLNAHLRYECGKRPKFKCPHCNKKCHQKCNLKSHIALKHDQ 104
           AGE  F C  CSK +++   L  HLR   G+RP ++C  C K   Q  +L  H  +   +
Sbjct: 252 AGEKSFECRACSKVFVKSSDLLKHLRTHTGERP-YECAQCGKAFSQTSHLTQHQRIHSGE 310

Query: 105 --LLAPLAPRSYRRNSQL---------NGSFICPKCSNRYVYKHNLKQHLKFECGVEPQF 153
                P+  +++R +S L           SF C +C   + +  NL QH K   G  P +
Sbjct: 311 TPYACPVCGKAFRHSSSLVRHQRIHTAEKSFRCSECGKAFSHGSNLSQHRKIHAGGRP-Y 369

Query: 154 KCPYCDKRCKLKGNLMSH 171
            C  C +R     +L+ H
Sbjct: 370 ACAQCGRRFCRNSHLIQH 387

May be involved in transcriptional regulation.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	177
307206177	179	Zinc finger protein 64-like protein, iso	0.700	0.692	0.409	1e-21
383864277	281	PREDICTED: zinc finger protein 786-like	0.717	0.451	0.358	5e-20
340718126	175	PREDICTED: zinc finger protein 782-like	0.824	0.834	0.347	2e-18
332026404	209	Longitudinals lacking protein, isoforms	0.836	0.708	0.337	3e-18
380016139	178	PREDICTED: zinc finger protein 234-like	0.706	0.702	0.357	4e-18
307206181	167	Longitudinals lacking protein, isoforms	0.689	0.730	0.377	2e-17
307206171	207	Longitudinals lacking protein, isoforms	0.819	0.700	0.323	4e-17
350400510	258	PREDICTED: zinc finger protein 41-like [	0.706	0.484	0.347	9e-17
340718138	258	PREDICTED: zinc finger protein 225-like	0.706	0.484	0.347	2e-16
307206186	200	Longitudinals lacking protein, isoforms	0.830	0.735	0.331	3e-16

>gi|307206177|gb|EFN84257.1| Zinc finger protein 64-like protein, isoforms 1 and 2 [Harpegnathos saltator]

 Score =  108 bits (269), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 54/132 (40%), Positives = 80/132 (60%), Gaps = 8/132 (6%)

Query: 53  PKCSKTYLRQYTLNAHLRYECGKRPKFKCPHCNKKCHQKCNLKSHIALKH---DQLLAPL 109
           P C   ++ +  L +HLRY+CG++P+FKCP+C+  C  K +++ HI +KH   D  +  +
Sbjct: 33  PNCQSVFVWKRNLTSHLRYQCGQQPRFKCPYCDYMCKVKADIRKHIRVKHQDHDIYVIDI 92

Query: 110 APRS---YRRNSQLNGSFICPK--CSNRYVYKHNLKQHLKFECGVEPQFKCPYCDKRCKL 164
             +     R N      F CP   CS  + +K NL +HLK+ECG++P+FKCPYCD   KL
Sbjct: 93  FQQWNKFQRSNDDDRIRFSCPNYNCSRAFSWKRNLTRHLKYECGLQPRFKCPYCDYYSKL 152

Query: 165 KGNLMSHIALKH 176
           KGNL  H+  +H
Sbjct: 153 KGNLKKHLIRRH 164

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383864277|ref|XP_003707606.1| PREDICTED: zinc finger protein 786-like [Megachile rotundata]

 Score =  102 bits (255), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 53/148 (35%), Positives = 83/148 (56%), Gaps = 21/148 (14%)

Query: 49  VFACPK--CSKTYLRQYTLNAHLRYECGKRPKFKCPHCNKKCHQKCNLKSHIALKHDQLL 106
           V+ CP   C+K++  +  LN HLRYECG +P+FKCP+C  +C  K ++  HI  +H   +
Sbjct: 117 VYVCPNPNCAKSFNWKGNLNRHLRYECGLQPRFKCPYCEYRCKVKGDVSKHITRRHHGSV 176

Query: 107 APLAPRSYRRNSQLNGS----------------FICPK--CSNRYVYKHNLKQHLKFECG 148
             +    +++   L G+                F CP   C + + +K NL  HL+++CG
Sbjct: 177 VYVVD-LWQKEPSLMGAMSTGHRFANWYARPNKFACPNPNCRSVFAWKRNLTSHLRYQCG 235

Query: 149 VEPQFKCPYCDKRCKLKGNLMSHIALKH 176
            +P+FKCPYCD  CK+K ++  HI +KH
Sbjct: 236 QKPRFKCPYCDYLCKVKADIRKHIRVKH 263

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340718126|ref|XP_003397523.1| PREDICTED: zinc finger protein 782-like [Bombus terrestris] gi|350400493|ref|XP_003485853.1| PREDICTED: zinc finger protein 782-like [Bombus impatiens]

 Score = 97.4 bits (241), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 57/164 (34%), Positives = 80/164 (48%), Gaps = 18/164 (10%)

Query: 28  LNLITNKRTASSSEDKPAGEDVFACPKCSKTYLRQYTLNAHLRYECGKRPKFKCPHCNKK 87
           L  I +K    SS      +  F CP+C K+Y  +  + AH +Y+CGK P+F+CP+C K 
Sbjct: 4   LPWIEDKYPERSSR---KSKTRFPCPRCRKSYTTKSAVTAHFKYDCGKPPRFECPYCGKL 60

Query: 88  CHQKCNLKSHIALKH----------DQLLAPLAPRSYRRN-----SQLNGSFICPKCSNR 132
             +K N++ HI  KH          D LL     R Y R      +   G F CP C+N 
Sbjct: 61  SKKKFNIQDHIRHKHPSKPVICDRLDDLLRVAHSRKYARKRDKLYNAFTGKFHCPNCNNG 120

Query: 133 YVYKHNLKQHLKFECGVEPQFKCPYCDKRCKLKGNLMSHIALKH 176
           Y  +  +  H ++ECG  P++KCPYC    K   N+  HI   H
Sbjct: 121 YGRRDTMLGHFRYECGKAPRYKCPYCTMCSKKTSNVYQHIRCMH 164

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332026404|gb|EGI66533.1| Longitudinals lacking protein, isoforms A/B/D/L [Acromyrmex echinatior]

 Score = 97.1 bits (240), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 56/166 (33%), Positives = 83/166 (50%), Gaps = 18/166 (10%)

Query: 21  RTASSDLLNLITNKRTASSSEDKPAGEDVFACPKCSKTYLRQYTLNAHLRYECGKRPKFK 80
           RT   D   L+TNK   SS E        F C  C+  +  ++ L  H R ECG+ P++ 
Sbjct: 33  RTWRKDYNRLVTNKSITSSREQ---NAKSFPCGNCNSVFSMKHNLQYHWRIECGQPPRYN 89

Query: 81  CPHCNKKCHQKCNLKSHIALKHDQLLAPLAPRSYRRNS----------QLNGSFICPKCS 130
           CP+C  +     N+++H+     + + P+A + +  +S          Q N ++ C KC 
Sbjct: 90  CPYCAYRTKHPSNVRAHV-----RQIRPVAMQRFHAHSNQCVYNPDGAQQNRNYPCHKCG 144

Query: 131 NRYVYKHNLKQHLKFECGVEPQFKCPYCDKRCKLKGNLMSHIALKH 176
           N +  K+NL  HLKF+CG  P+F CPYC  R K   N+ SHI   H
Sbjct: 145 NAFTRKNNLYNHLKFQCGQLPRFNCPYCSYRTKHSSNVRSHIRRIH 190

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380016139|ref|XP_003692046.1| PREDICTED: zinc finger protein 234-like [Apis florea]

 Score = 96.3 bits (238), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 50/140 (35%), Positives = 73/140 (52%), Gaps = 15/140 (10%)

Query: 52  CPKCSKTYLRQYTLNAHLRYECGKRPKFKCPHCNKKCHQKCNLKSHIALKH---DQLLAP 108
           CPKC +T+  +Y L  HL+Y CG+ P+F CP+C  +     N+++H+  KH   +  +  
Sbjct: 20  CPKCGRTFTWRYNLQHHLKYACGQLPRFNCPYCAYRTKHTSNVRAHVRRKHPDREVYVVD 79

Query: 109 LAPRSYRRNSQLNGS------------FICPKCSNRYVYKHNLKQHLKFECGVEPQFKCP 156
           L      R S + GS            F C  C + +  +HNL+ HLKFECG  P+F CP
Sbjct: 80  LMSEKEVRWSSIRGSTFSRTDEQHVQKFPCGNCHSVFSRRHNLQYHLKFECGQSPRFNCP 139

Query: 157 YCDKRCKLKGNLMSHIALKH 176
           YC  R K   N+ +H+   H
Sbjct: 140 YCVYRTKHPSNVRAHVRRIH 159

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307206181|gb|EFN84261.1| Longitudinals lacking protein, isoforms A/B/D/L [Harpegnathos saltator]

 Score = 94.4 bits (233), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 51/135 (37%), Positives = 72/135 (53%), Gaps = 13/135 (9%)

Query: 51  ACPKCSKTYLRQYTLNAHLRYECGKRPKFKCPHCNKKCHQKC-NLKSHIALK-------- 101
            CPKC   Y    +L  HLRYECG  P+FKCP+C  +  Q+  N+K   +L+        
Sbjct: 18  VCPKCGNGYTVIKSLRRHLRYECGLTPRFKCPYCGTRSKQRGHNIKLEASLECQYPLVIM 77

Query: 102 ----HDQLLAPLAPRSYRRNSQLNGSFICPKCSNRYVYKHNLKQHLKFECGVEPQFKCPY 157
                D    P + RS R   +     +C +CS  Y++  +LK+H KFECG EP+ +CPY
Sbjct: 78  ESKGSDDDEKPFSSRSRRNGLKCTERHMCSRCSKSYIHAWHLKRHTKFECGQEPKVQCPY 137

Query: 158 CDKRCKLKGNLMSHI 172
           C  R K +G++  HI
Sbjct: 138 CTVRMKQRGHVYRHI 152

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307206171|gb|EFN84251.1| Longitudinals lacking protein, isoforms A/B/D/L [Harpegnathos saltator]

 Score = 92.8 bits (229), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 53/164 (32%), Positives = 81/164 (49%), Gaps = 19/164 (11%)

Query: 32  TNKRTASSSEDKPAGEDVFACPKCSKTYLRQYTLNAHLRYECGKRPKFKCPHCNKKCHQK 91
           T +R A  S + PA    F CP CS  +  +  L  H ++ECG+ P+F CP+C+ +    
Sbjct: 25  TCRRAAVDSGNFPAERPKFPCPTCSSVFSHKNNLYYHSKFECGQLPRFNCPYCHYRTKHV 84

Query: 92  CNLKSHIALKH-DQLLAPLAPRSYRRNSQLNGS------------------FICPKCSNR 132
            N+++H+  KH    L+P+     R  + L+ S                  F C  CS+ 
Sbjct: 85  SNVRAHVRRKHPGNELSPMRLNQQRDYNWLDVSRSAVLMSSAAAGQHVVSRFPCGNCSSV 144

Query: 133 YVYKHNLKQHLKFECGVEPQFKCPYCDKRCKLKGNLMSHIALKH 176
           +  KHNL+ HL+ ECG  P+F CPYC  R +   N+ +H+   H
Sbjct: 145 FSMKHNLQYHLRVECGQSPRFNCPYCVYRTRHPSNVRAHVRRIH 188

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350400510|ref|XP_003485858.1| PREDICTED: zinc finger protein 41-like [Bombus impatiens]

 Score = 92.0 bits (227), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 50/144 (34%), Positives = 75/144 (52%), Gaps = 19/144 (13%)

Query: 45  AGED--VFACPKCSKTYLRQYTLNAHLRYECGKRPKFKCPHCNKKCHQKCNLKSHIALKH 102
            G+D  ++ CPKC  ++  +   N H +YECG  P+FKCP+C  +  Q   + SHI  + 
Sbjct: 8   VGKDRLLYYCPKCLHSFTLKSNRNRHYKYECGHEPRFKCPYCKLRSKQTSQIYSHILDRS 67

Query: 103 DQLL-APLAPRSYRRNSQLNGS----------------FICPKCSNRYVYKHNLKQHLKF 145
            +LL       SY   S+ + S                ++CPKC N Y    +L +HL++
Sbjct: 68  FRLLYGNYGAGSYEEASKFHASDDVYGSPRRRGSKKKNYVCPKCGNGYTVVKSLNRHLRY 127

Query: 146 ECGVEPQFKCPYCDKRCKLKGNLM 169
           ECGV P+FKCPYC  R K + + +
Sbjct: 128 ECGVAPRFKCPYCGTRSKQRAHRI 151

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340718138|ref|XP_003397529.1| PREDICTED: zinc finger protein 225-like [Bombus terrestris]

 Score = 90.5 bits (223), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 50/144 (34%), Positives = 74/144 (51%), Gaps = 19/144 (13%)

Query: 45  AGED--VFACPKCSKTYLRQYTLNAHLRYECGKRPKFKCPHCNKKCHQKCNLKSHIALKH 102
            G+D  ++ CPKC  ++  +   N H +YECG  P+FKCP+C  +  Q   + SHI    
Sbjct: 8   VGKDRLLYYCPKCLHSFTLKSNRNRHYKYECGHEPRFKCPYCKLRSKQTSQIYSHILDHS 67

Query: 103 DQLL-APLAPRSYRRNSQLNGS----------------FICPKCSNRYVYKHNLKQHLKF 145
            +LL       SY   S+ + S                ++CPKC N Y    +L +HL++
Sbjct: 68  FRLLYGNYGAGSYEEASKFHASDDVYGSLRCRGSKKKNYVCPKCGNGYTVVKSLTRHLRY 127

Query: 146 ECGVEPQFKCPYCDKRCKLKGNLM 169
           ECGV P+FKCPYC  R K + + +
Sbjct: 128 ECGVAPRFKCPYCGTRSKQRAHRI 151

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307206186|gb|EFN84266.1| Longitudinals lacking protein, isoforms N/O/W/X/Y [Harpegnathos saltator]

 Score = 90.1 bits (222), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 55/166 (33%), Positives = 79/166 (47%), Gaps = 19/166 (11%)

Query: 21  RTASSDLLNLITNKRTASSSEDKPAGEDVFACPKCSKTYLRQYTLNAHLRYECGKRPKFK 80
           ++AS D L  I    T +S            CP+C +TY  + +L  H+++ECG +  FK
Sbjct: 25  QSASIDYLRKIAVAETPASP---------LMCPQCGRTYKMKRSLKTHMKFECGGQRNFK 75

Query: 81  CPHCNKKCHQKCNLKSHIALKHDQLLAP----------LAPRSYRRNSQLNGSFICPKCS 130
           C  C  K  Q  +L+ H+  +H+  LAP          +  R  R N + N +F C +C 
Sbjct: 76  CHVCPAKYTQNISLRRHLLRRHNIYLAPKFVVPRQLFSIGRRGPRHNFKSNRTFSCHQCG 135

Query: 131 NRYVYKHNLKQHLKFECGVEPQFKCPYCDKRCKLKGNLMSHIALKH 176
             Y  KHNL +HL+FECG +  F C  C  R    G L  H+   H
Sbjct: 136 RLYQMKHNLMKHLRFECGGQKHFACSLCTSRYTQNGKLRQHMLNAH 181

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	177
ZFIN|ZDB-GENE-031118-80	666	zfp64 "zinc finger protein 64	0.734	0.195	0.328	6.5e-17
UNIPROTKB|D4A4M7	474	Zfp64 "Protein Zfp64" [Rattus	0.734	0.274	0.314	3e-16
UNIPROTKB|F1NMT1	559	ZFP64 "Uncharacterized protein	0.734	0.232	0.307	3.4e-16
ZFIN|ZDB-GENE-120215-2	268	si:dkey-3p4.4 "si:dkey-3p4.4"	0.728	0.481	0.307	4.7e-16
UNIPROTKB|F1NMT2	689	ZFP64 "Uncharacterized protein	0.734	0.188	0.307	5e-16
RGD|1307948	678	Zfp64 "zinc finger protein 64"	0.734	0.191	0.314	6.2e-16
UNIPROTKB|Q5JWM1	679	ZFP64 "Zinc finger protein 64	0.734	0.191	0.314	6.2e-16
UNIPROTKB|Q9NPA5	681	ZFP64 "Zinc finger protein 64	0.734	0.190	0.314	6.3e-16
UNIPROTKB|E2R5D8	682	ZFP64 "Uncharacterized protein	0.734	0.190	0.314	6.3e-16
UNIPROTKB|A5PKJ0	678	ZFP64 "ZFP64 protein" [Bos tau	0.734	0.191	0.321	8e-16

ZFIN|ZDB-GENE-031118-80 zfp64 "zinc finger protein 64 homolog (mouse)" [Danio rerio (taxid:7955)]

 Score = 218 (81.8 bits), Expect = 6.5e-17, P = 6.5e-17
 Identities = 47/143 (32%), Positives = 72/143 (50%)

Query:    46 GEDVFACPKCSKTYLRQYTLNAHLRYECGKRPKFKCPHCNKKCHQKCNLKSHIALKHDQ- 104
             GE  F C  C K + R+  LN H R   G++P  KC +C        +LK H+ + +D+ 
Sbjct:   144 GERPFECELCHKRFSRRDKLNLHSRLHTGEKPH-KCKYCTYAAADSSSLKKHLRIHYDER 202

Query:   105 -LLAPLAPRSYRRNSQL---------NGSFICPKCSNRYVYKHNLKQHLKFECGVEPQFK 154
                  + P + R +SQL         +  F C +C  ++    +LK+H +   G +P +K
Sbjct:   203 PFKCQICPYASRNSSQLTVHLRSHTGDAPFQCNQCDAKFKINSDLKRHSRVHSGEKP-YK 261

Query:   155 CPYCDKRCKLKGNLMSHIALKHT 177
             C  CD RC +K NL SH+ LKH+
Sbjct:   262 CDLCDYRCAMKANLKSHVHLKHS 284

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

UNIPROTKB|D4A4M7 Zfp64 "Protein Zfp64" [Rattus norvegicus (taxid:10116)]

 Score = 209 (78.6 bits), Expect = 3.0e-16, P = 3.0e-16
 Identities = 45/143 (31%), Positives = 72/143 (50%)

Query:    46 GEDVFACPKCSKTYLRQYTLNAHLRYECGKRPKFKCPHCNKKCHQKCNLKSHIALKHDQ- 104
             G+    C  C K + R+  L  H+R   G +P +KC  C+       +L  H+ +  D+ 
Sbjct:   171 GDKPHKCEVCGKCFSRKDKLKTHMRCHTGVKP-YKCKTCDYAAADSSSLNKHLRIHSDER 229

Query:   105 -LLAPLAPRSYRRNSQL---------NGSFICPKCSNRYVYKHNLKQHLKFECGVEPQFK 154
                  + P + R +SQL         +  F C  CS ++    +LK+H++   G +P FK
Sbjct:   230 PFKCQICPYASRNSSQLTVHLRSHTGDAPFQCWLCSAKFKISSDLKRHMRVHSGEKP-FK 288

Query:   155 CPYCDKRCKLKGNLMSHIALKHT 177
             C +C+ RC +KGNL SHI +KH+
Sbjct:   289 CDFCNVRCTMKGNLKSHIRIKHS 311

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|F1NMT1 ZFP64 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 210 (79.0 bits), Expect = 3.4e-16, P = 3.4e-16
 Identities = 44/143 (30%), Positives = 72/143 (50%)

Query:    46 GEDVFACPKCSKTYLRQYTLNAHLRYECGKRPKFKCPHCNKKCHQKCNLKSHIALKHDQ- 104
             G+    C  C+K + R+  L  H+R   G +P +KC HC+       +L  H  +  ++ 
Sbjct:   234 GDKPHKCDVCNKCFSRKDKLKMHMRSHTGVKP-YKCKHCDYAAADSSSLNKHQRIHSNER 292

Query:   105 -LLAPLAPRSYRRNSQL---------NGSFICPKCSNRYVYKHNLKQHLKFECGVEPQFK 154
                  + P + R +SQL         +  F C  C  ++    +LK+H++   G +P +K
Sbjct:   293 PFKCQICPYASRNSSQLTVHLRSHTGDAPFQCQMCPAKFKINSDLKRHMRVHSGEKP-YK 351

Query:   155 CPYCDKRCKLKGNLMSHIALKHT 177
             C YC+ RC +KGNL SHI +KH+
Sbjct:   352 CEYCEVRCAMKGNLKSHIRIKHS 374

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

ZFIN|ZDB-GENE-120215-2 si:dkey-3p4.4 "si:dkey-3p4.4" [Danio rerio (taxid:7955)]

 Score = 200 (75.5 bits), Expect = 4.7e-16, P = 4.7e-16
 Identities = 44/143 (30%), Positives = 68/143 (47%)

Query:    46 GEDVFACPKCSKTYLRQYTLNAHLRYECGKRPKFKCPHCNKKCHQKCNLKSHIALKHDQ- 104
             GE  F C +C K++ +  +LN H+R   G++P F CPHC K  +Q  +L  H+ +   + 
Sbjct:   118 GEKPFTCTQCGKSFSQSSSLNLHVRIHTGEKP-FTCPHCGKSFNQSSHLNCHMKIHTGEK 176

Query:   105 -LLAPLAPRSYRRNSQLN-------GS--FICPKCSNRYVYKHNLKQHLKFECGVEPQFK 154
                 P   +S+ ++S LN       G   F C +C   +     L QH++   G +P F 
Sbjct:   177 PFTCPQCGKSFSQSSNLNCHMTIHTGEKPFTCTQCGKSFTCSSRLHQHMRIHTGEKP-FS 235

Query:   155 CPYCDKRCKLKGNLMSHIALKHT 177
             C  C K      +L  HI + HT
Sbjct:   236 CTQCGKSFSQSSHLNQHI-MSHT 257

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

UNIPROTKB|F1NMT2 ZFP64 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 210 (79.0 bits), Expect = 5.0e-16, P = 5.0e-16
 Identities = 44/143 (30%), Positives = 72/143 (50%)

Query:    46 GEDVFACPKCSKTYLRQYTLNAHLRYECGKRPKFKCPHCNKKCHQKCNLKSHIALKHDQ- 104
             G+    C  C+K + R+  L  H+R   G +P +KC HC+       +L  H  +  ++ 
Sbjct:   173 GDKPHKCDVCNKCFSRKDKLKMHMRSHTGVKP-YKCKHCDYAAADSSSLNKHQRIHSNER 231

Query:   105 -LLAPLAPRSYRRNSQL---------NGSFICPKCSNRYVYKHNLKQHLKFECGVEPQFK 154
                  + P + R +SQL         +  F C  C  ++    +LK+H++   G +P +K
Sbjct:   232 PFKCQICPYASRNSSQLTVHLRSHTGDAPFQCQMCPAKFKINSDLKRHMRVHSGEKP-YK 290

Query:   155 CPYCDKRCKLKGNLMSHIALKHT 177
             C YC+ RC +KGNL SHI +KH+
Sbjct:   291 CEYCEVRCAMKGNLKSHIRIKHS 313

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

RGD|1307948 Zfp64 "zinc finger protein 64" [Rattus norvegicus (taxid:10116)]

 Score = 209 (78.6 bits), Expect = 6.2e-16, P = 6.2e-16
 Identities = 45/143 (31%), Positives = 72/143 (50%)

Query:    46 GEDVFACPKCSKTYLRQYTLNAHLRYECGKRPKFKCPHCNKKCHQKCNLKSHIALKHDQ- 104
             G+    C  C K + R+  L  H+R   G +P +KC  C+       +L  H+ +  D+ 
Sbjct:   171 GDKPHKCEVCGKCFSRKDKLKTHMRCHTGVKP-YKCKTCDYAAADSSSLNKHLRIHSDER 229

Query:   105 -LLAPLAPRSYRRNSQL---------NGSFICPKCSNRYVYKHNLKQHLKFECGVEPQFK 154
                  + P + R +SQL         +  F C  CS ++    +LK+H++   G +P FK
Sbjct:   230 PFKCQICPYASRNSSQLTVHLRSHTGDAPFQCWLCSAKFKISSDLKRHMRVHSGEKP-FK 288

Query:   155 CPYCDKRCKLKGNLMSHIALKHT 177
             C +C+ RC +KGNL SHI +KH+
Sbjct:   289 CDFCNVRCTMKGNLKSHIRIKHS 311

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|Q5JWM1 ZFP64 "Zinc finger protein 64 homolog, isoforms 1 and 2" [Homo sapiens (taxid:9606)]

 Score = 209 (78.6 bits), Expect = 6.2e-16, P = 6.2e-16
 Identities = 45/143 (31%), Positives = 72/143 (50%)

Query:    46 GEDVFACPKCSKTYLRQYTLNAHLRYECGKRPKFKCPHCNKKCHQKCNLKSHIALKHDQ- 104
             G+    C  C K + R+  L  H+R   G +P +KC  C+       +L  H+ +  D+ 
Sbjct:   169 GDKPHKCEVCGKCFSRKDKLKTHMRCHTGVKP-YKCKTCDYAAADSSSLNKHLRIHSDER 227

Query:   105 -LLAPLAPRSYRRNSQL---------NGSFICPKCSNRYVYKHNLKQHLKFECGVEPQFK 154
                  + P + R +SQL         +  F C  CS ++    +LK+H++   G +P FK
Sbjct:   228 PFKCQICPYASRNSSQLTVHLRSHTGDAPFQCWLCSAKFKISSDLKRHMRVHSGEKP-FK 286

Query:   155 CPYCDKRCKLKGNLMSHIALKHT 177
             C +C+ RC +KGNL SHI +KH+
Sbjct:   287 CEFCNVRCTMKGNLKSHIRIKHS 309

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|Q9NPA5 ZFP64 "Zinc finger protein 64 homolog, isoforms 1 and 2" [Homo sapiens (taxid:9606)]

 Score = 209 (78.6 bits), Expect = 6.3e-16, P = 6.3e-16
 Identities = 45/143 (31%), Positives = 72/143 (50%)

Query:    46 GEDVFACPKCSKTYLRQYTLNAHLRYECGKRPKFKCPHCNKKCHQKCNLKSHIALKHDQ- 104
             G+    C  C K + R+  L  H+R   G +P +KC  C+       +L  H+ +  D+ 
Sbjct:   171 GDKPHKCEVCGKCFSRKDKLKTHMRCHTGVKP-YKCKTCDYAAADSSSLNKHLRIHSDER 229

Query:   105 -LLAPLAPRSYRRNSQL---------NGSFICPKCSNRYVYKHNLKQHLKFECGVEPQFK 154
                  + P + R +SQL         +  F C  CS ++    +LK+H++   G +P FK
Sbjct:   230 PFKCQICPYASRNSSQLTVHLRSHTGDAPFQCWLCSAKFKISSDLKRHMRVHSGEKP-FK 288

Query:   155 CPYCDKRCKLKGNLMSHIALKHT 177
             C +C+ RC +KGNL SHI +KH+
Sbjct:   289 CEFCNVRCTMKGNLKSHIRIKHS 311

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|E2R5D8 ZFP64 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 209 (78.6 bits), Expect = 6.3e-16, P = 6.3e-16
 Identities = 45/143 (31%), Positives = 72/143 (50%)

Query:    46 GEDVFACPKCSKTYLRQYTLNAHLRYECGKRPKFKCPHCNKKCHQKCNLKSHIALKHDQ- 104
             G+    C  C K + R+  L  H+R   G +P +KC  C+       +L  H+ +  D+ 
Sbjct:   171 GDKPHKCEVCGKCFSRKDKLKTHMRCHTGVKP-YKCKTCDYAAADSSSLNKHLRIHSDER 229

Query:   105 -LLAPLAPRSYRRNSQL---------NGSFICPKCSNRYVYKHNLKQHLKFECGVEPQFK 154
                  + P + R +SQL         +  F C  CS ++    +LK+H++   G +P FK
Sbjct:   230 PFKCQICPYASRNSSQLTVHLRSHTGDAPFQCWLCSAKFKISSDLKRHMRVHSGEKP-FK 288

Query:   155 CPYCDKRCKLKGNLMSHIALKHT 177
             C +C+ RC +KGNL SHI +KH+
Sbjct:   289 CEFCNVRCTMKGNLKSHIRIKHS 311

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

UNIPROTKB|A5PKJ0 ZFP64 "ZFP64 protein" [Bos taurus (taxid:9913)]

 Score = 208 (78.3 bits), Expect = 8.0e-16, P = 8.0e-16
 Identities = 46/143 (32%), Positives = 70/143 (48%)

Query:    46 GEDVFACPKCSKTYLRQYTLNAHLRYECGKRPKFKCPHCNKKCHQKCNLKSHIALKHDQ- 104
             G+    C  C K + R+  L  H R   G +P +KC  C+       +L  H+ +  D+ 
Sbjct:   169 GDKPHKCEVCGKCFSRKDKLKTHTRCHTGVKP-YKCKSCDYAAADSSSLNKHLRIHSDER 227

Query:   105 -LLAPLAPRSYRRNSQL---------NGSFICPKCSNRYVYKHNLKQHLKFECGVEPQFK 154
                  L P + R +SQL         +  F C  CS ++    +LK+H++   G +P FK
Sbjct:   228 PFKCQLCPYASRNSSQLTVHLRSHTGDAPFQCWLCSAKFKISSDLKRHMRVHSGEKP-FK 286

Query:   155 CPYCDKRCKLKGNLMSHIALKHT 177
             C +C  RC +KGNL SHI +KH+
Sbjct:   287 CEFCSVRCTMKGNLKSHIRIKHS 309

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

No hit with e-value below 0.005

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	177
KOG2462|consensus	279		99.95
KOG2462|consensus	279		99.84
KOG3576|consensus	267		99.81
KOG1074|consensus	958		99.79
KOG3623|consensus	1007		99.75
KOG1074|consensus	958		99.72
KOG3608|consensus	467		99.71
KOG3608|consensus	467		99.68
KOG3623|consensus	1007		99.65
KOG3576|consensus	267		99.61
KOG3993|consensus	500		99.45
PHA00733	128	hypothetical protein	99.37
PLN03086	567	PRLI-interacting factor K; Provisional	99.36
PHA00733	128	hypothetical protein	99.21
PHA02768	55	hypothetical protein; Provisional	99.2
PHA02768	55	hypothetical protein; Provisional	99.02
PLN03086	567	PRLI-interacting factor K; Provisional	98.93
PF13465	26	zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A	98.9
PF05605	54	zf-Di19: Drought induced 19 protein (Di19), zinc-b	98.83
KOG3993|consensus	500		98.78
PHA00732	79	hypothetical protein	98.76
PHA00616	44	hypothetical protein	98.64
PF05605	54	zf-Di19: Drought induced 19 protein (Di19), zinc-b	98.63
PF13465	26	zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A	98.62
PHA00616	44	hypothetical protein	98.58
PHA00732	79	hypothetical protein	98.58
PF00096	23	zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR0070	98.49
PF13894	24	zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP	98.45
PF12756	100	zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB:	98.37
PF00096	23	zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR0070	98.31
PF13912	27	zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9	98.28
PF12756	100	zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB:	98.17
PF13909	24	zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W	98.08
PF13894	24	zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP	98.07
PF09237	54	GAGA: GAGA factor; InterPro: IPR015318 Zinc finger	98.02
PF13912	27	zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9	97.99
smart00355	26	ZnF_C2H2 zinc finger.	97.8
COG5189	423	SFP1 Putative transcriptional repressor regulating	97.79
PF09237	54	GAGA: GAGA factor; InterPro: IPR015318 Zinc finger	97.67
PF12874	25	zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG	97.64
KOG2231|consensus	669		97.55
KOG1146|consensus	1406		97.53
COG5189	423	SFP1 Putative transcriptional repressor regulating	97.47
smart00355	26	ZnF_C2H2 zinc finger.	97.41
PF12171	27	zf-C2H2_jaz: Zinc-finger double-stranded RNA-bindi	97.41
PF13909	24	zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W	97.39
PRK04860	160	hypothetical protein; Provisional	97.35
PF12874	25	zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG	97.21
COG5236	493	Uncharacterized conserved protein, contains RING Z	96.93
KOG2785|consensus	390		96.86
KOG2893|consensus	341		96.69
PF12171	27	zf-C2H2_jaz: Zinc-finger double-stranded RNA-bindi	96.65
PF13913	25	zf-C2HC_2: zinc-finger of a C2HC-type	96.55
KOG1146|consensus	1406		96.51
PRK04860	160	hypothetical protein; Provisional	96.5
PF12013	109	DUF3505: Protein of unknown function (DUF3505); In	96.37
PF12013	109	DUF3505: Protein of unknown function (DUF3505); In	96.28
KOG2482|consensus	423		96.28
KOG4173|consensus	253		96.23
smart00451	35	ZnF_U1 U1-like zinc finger. Family of C2H2-type zi	96.1
KOG2482|consensus	423		96.05
KOG2893|consensus	341		95.81
COG5236	493	Uncharacterized conserved protein, contains RING Z	95.64
smart00451	35	ZnF_U1 U1-like zinc finger. Family of C2H2-type zi	95.57
KOG2785|consensus	390		95.38
COG4049	65	Uncharacterized protein containing archaeal-type C	94.68
cd00350	33	rubredoxin_like Rubredoxin_like; nonheme iron bind	94.58
KOG4173|consensus	253		94.42
KOG2186|consensus	276		94.34
COG4049	65	Uncharacterized protein containing archaeal-type C	93.88
PF05443	132	ROS_MUCR: ROS/MUCR transcriptional regulator prote	93.87
COG5048	467	FOG: Zn-finger [General function prediction only]	93.51
KOG2186|consensus	276		93.2
PF06524	314	NOA36: NOA36 protein; InterPro: IPR010531 This fam	93.17
PF09538	108	FYDLN_acid: Protein of unknown function (FYDLN_aci	92.81
PF02892	45	zf-BED: BED zinc finger; InterPro: IPR003656 Zinc	92.81
KOG2231|consensus	669		92.79
COG5048	467	FOG: Zn-finger [General function prediction only]	92.17
COG2888	61	Predicted Zn-ribbon RNA-binding protein with a fun	91.49
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	91.47
cd00729	34	rubredoxin_SM Rubredoxin, Small Modular nonheme ir	91.25
COG4957	148	Predicted transcriptional regulator [Transcription	90.63
smart00614	50	ZnF_BED BED zinc finger. DNA-binding domain in chr	90.08
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	90.01
smart00659	44	RPOLCX RNA polymerase subunit CX. present in RNA p	89.69
PRK00398	46	rpoP DNA-directed RNA polymerase subunit P; Provis	89.08
smart00734	26	ZnF_Rad18 Rad18-like CCHC zinc finger. Yeast Rad18	88.99
PF08274	30	PhnA_Zn_Ribbon: PhnA Zinc-Ribbon ; InterPro: IPR01	88.22
PF13717	36	zinc_ribbon_4: zinc-ribbon domain	88.15
PRK14890	59	putative Zn-ribbon RNA-binding protein; Provisiona	87.91
TIGR00373	158	conserved hypothetical protein TIGR00373. This fam	87.69
TIGR02300	129	FYDLN_acid conserved hypothetical protein TIGR0230	87.56
COG1592	166	Rubrerythrin [Energy production and conversion]	87.2
TIGR02098	38	MJ0042_CXXC MJ0042 family finger-like domain. This	87.17
PRK09678	72	DNA-binding transcriptional regulator; Provisional	87.04
PRK00464	154	nrdR transcriptional regulator NrdR; Validated	86.15
PF15269	54	zf-C2H2_7: Zinc-finger	85.85
COG1997	89	RPL43A Ribosomal protein L37AE/L43A [Translation,	85.55
PF05443	132	ROS_MUCR: ROS/MUCR transcriptional regulator prote	85.45
PRK06266	178	transcription initiation factor E subunit alpha; V	85.29
KOG4167|consensus	907		84.82
PF03604	32	DNA_RNApol_7kD: DNA directed RNA polymerase, 7 kDa	84.68
smart00531	147	TFIIE Transcription initiation factor IIE.	84.34
TIGR00373	158	conserved hypothetical protein TIGR00373. This fam	84.14
PF09723	42	Zn-ribbon_8: Zinc ribbon domain; InterPro: IPR0134	84.06
PF13719	37	zinc_ribbon_5: zinc-ribbon domain	83.18
PF04959	214	ARS2: Arsenite-resistance protein 2; InterPro: IPR	83.16
smart00834	41	CxxC_CXXC_SSSS Putative regulatory protein. CxxC_C	83.12
PF04959	214	ARS2: Arsenite-resistance protein 2; InterPro: IPR	82.85
PRK06266	178	transcription initiation factor E subunit alpha; V	82.6
PF10571	26	UPF0547: Uncharacterised protein family UPF0547; I	82.45
TIGR02605	52	CxxC_CxxC_SSSS putative regulatory protein, FmdB f	81.86
PF01780	90	Ribosomal_L37ae: Ribosomal L37ae protein family; I	81.13

>KOG2462|consensus

Probab=99.95  E-value=5.4e-28  Score=164.27  Aligned_cols=129  Identities=26%  Similarity=0.507  Sum_probs=112.1

Q ss_pred             CCCCccccCccchhccChHHHHHHHHHHhCC--CCceeCCCCccccccchHHHhHHHHhcCCCCCCCCccccc-------
Q psy16578         45 AGEDVFACPKCSKTYLRQYTLNAHLRYECGK--RPKFKCPHCNKKCHQKCNLKSHIALKHDQLLAPLAPRSYR-------  115 (177)
Q Consensus        45 ~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~--~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~~~~-------  115 (177)
                      .....|+|..||+.+.+..+|.+|.+.|...  ++-+.|+.|++.|.+...|.+|+++|.-.-.+..|.+.|.       
T Consensus       126 ~~~~r~~c~eCgk~ysT~snLsrHkQ~H~~~~s~ka~~C~~C~K~YvSmpALkMHirTH~l~c~C~iCGKaFSRPWLLQG  205 (279)
T KOG2462|consen  126 AKHPRYKCPECGKSYSTSSNLSRHKQTHRSLDSKKAFSCKYCGKVYVSMPALKMHIRTHTLPCECGICGKAFSRPWLLQG  205 (279)
T ss_pred             ccCCceeccccccccccccccchhhcccccccccccccCCCCCceeeehHHHhhHhhccCCCcccccccccccchHHhhc
Confidence            3456699999999999999999999999753  3458999999999999999999988886667777776665       


Q ss_pred             --cccCCCCceecCCccccccChhHHHHHHHHhhCCCCCccCCCCcccccchhHHHHHHhh
Q psy16578        116 --RNSQLNGSFICPKCSNRYVYKHNLKQHLKFECGVEPQFKCPYCDKRCKLKGNLMSHIAL  174 (177)
Q Consensus       116 --~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C~~~f~~~~~l~~H~~~  174 (177)
                        .++.+||||.|..|+|+|.++++|+.||++|.+.++ |+|..|+|.|+..+.|.+|...
T Consensus       206 HiRTHTGEKPF~C~hC~kAFADRSNLRAHmQTHS~~K~-~qC~~C~KsFsl~SyLnKH~ES  265 (279)
T KOG2462|consen  206 HIRTHTGEKPFSCPHCGKAFADRSNLRAHMQTHSDVKK-HQCPRCGKSFALKSYLNKHSES  265 (279)
T ss_pred             ccccccCCCCccCCcccchhcchHHHHHHHHhhcCCcc-ccCcchhhHHHHHHHHHHhhhh
Confidence              688899999999999999999999999999998665 9999999999999999999863

>KOG2462|consensus

Probab=99.84  E-value=9.5e-22  Score=134.04  Aligned_cols=98  Identities=23%  Similarity=0.465  Sum_probs=84.0

Q ss_pred             ceeCCCCccccccchHHHhHHHHhcCCC-----CCCCCcccccccc-------CCCCceecCCccccccChhHHHHHHHH
Q psy16578         78 KFKCPHCNKKCHQKCNLKSHIALKHDQL-----LAPLAPRSYRRNS-------QLNGSFICPKCSNRYVYKHNLKQHLKF  145 (177)
Q Consensus        78 ~~~C~~C~~~f~~~~~l~~H~~~~~~~~-----~~~~~~~~~~~~~-------~~~~~~~C~~C~~~f~~~~~l~~H~~~  145 (177)
                      .|.|++||+.+.+..+|.+|...|....     .++.|++.+....       ..+-+.+|.+|||.|...+.|+.|+|+
T Consensus       130 r~~c~eCgk~ysT~snLsrHkQ~H~~~~s~ka~~C~~C~K~YvSmpALkMHirTH~l~c~C~iCGKaFSRPWLLQGHiRT  209 (279)
T KOG2462|consen  130 RYKCPECGKSYSTSSNLSRHKQTHRSLDSKKAFSCKYCGKVYVSMPALKMHIRTHTLPCECGICGKAFSRPWLLQGHIRT  209 (279)
T ss_pred             ceeccccccccccccccchhhcccccccccccccCCCCCceeeehHHHhhHhhccCCCcccccccccccchHHhhccccc
Confidence            3999999999999999999998887653     3466666665322       223578999999999999999999999


Q ss_pred             hhCCCCCccCCCCcccccchhHHHHHHhhhc
Q psy16578        146 ECGVEPQFKCPYCDKRCKLKGNLMSHIALKH  176 (177)
Q Consensus       146 h~~~~~~~~C~~C~~~f~~~~~l~~H~~~~h  176 (177)
                      |+| |+||.|+.|++.|++++||+.||++|-
T Consensus       210 HTG-EKPF~C~hC~kAFADRSNLRAHmQTHS  239 (279)
T KOG2462|consen  210 HTG-EKPFSCPHCGKAFADRSNLRAHMQTHS  239 (279)
T ss_pred             ccC-CCCccCCcccchhcchHHHHHHHHhhc
Confidence            999 777999999999999999999999985

>KOG3576|consensus

Probab=99.81  E-value=2.1e-20  Score=121.97  Aligned_cols=113  Identities=26%  Similarity=0.513  Sum_probs=102.9

Q ss_pred             CCCccccCccchhccChHHHHHHHHHHhCCCCceeCCCCccccccchHHHhHHHHhcCCCCCCCCccccccccCCCCcee
Q psy16578         46 GEDVFACPKCSKTYLRQYTLNAHLRYECGKRPKFKCPHCNKKCHQKCNLKSHIALKHDQLLAPLAPRSYRRNSQLNGSFI  125 (177)
Q Consensus        46 ~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~  125 (177)
                      +...|.|.+|++.|.-..-|.+|++.|...++ |.|..||+.|....+|.+|+++|.|                 -+||+
T Consensus       114 d~d~ftCrvCgK~F~lQRmlnrh~kch~~vkr-~lct~cgkgfndtfdlkrh~rthtg-----------------vrpyk  175 (267)
T KOG3576|consen  114 DQDSFTCRVCGKKFGLQRMLNRHLKCHSDVKR-HLCTFCGKGFNDTFDLKRHTRTHTG-----------------VRPYK  175 (267)
T ss_pred             CCCeeeeehhhhhhhHHHHHHHHhhhccHHHH-HHHhhccCcccchhhhhhhhccccC-----------------ccccc
Confidence            45679999999999999999999999998877 9999999999999999999988876                 58999


Q ss_pred             cCCccccccChhHHHHHHHHhhCC----------CCCccCCCCcccccchhHHHHHHhhhc
Q psy16578        126 CPKCSNRYVYKHNLKQHLKFECGV----------EPQFKCPYCDKRCKLKGNLMSHIALKH  176 (177)
Q Consensus       126 C~~C~~~f~~~~~l~~H~~~h~~~----------~~~~~C~~C~~~f~~~~~l~~H~~~~h  176 (177)
                      |..|+++|..+-.|..|++.-||.          .+.|.|..||+.-.....+..|+..||
T Consensus       176 c~~c~kaftqrcsleshl~kvhgv~~~yaykerr~kl~vcedcg~t~~~~e~~~~h~~~~h  236 (267)
T KOG3576|consen  176 CSLCEKAFTQRCSLESHLKKVHGVQHQYAYKERRAKLYVCEDCGYTSERPEVYYLHLKLHH  236 (267)
T ss_pred             hhhhhHHHHhhccHHHHHHHHcCchHHHHHHHhhhheeeecccCCCCCChhHHHHHHHhcC
Confidence            999999999999999999976664          446999999999999999999999887

>KOG1074|consensus

Probab=99.79  E-value=5.4e-20  Score=141.29  Aligned_cols=57  Identities=32%  Similarity=0.620  Sum_probs=51.7

Q ss_pred             CccccCccchhccChHHHHHHHHHHhCCCCceeCCCCccccccchHHHhHHHHhcCCC
Q psy16578         48 DVFACPKCSKTYLRQYTLNAHLRYECGKRPKFKCPHCNKKCHQKCNLKSHIALKHDQL  105 (177)
Q Consensus        48 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~  105 (177)
                      .+++|.+|.+.|....+|+.|.+.|+++.+ |+|++||..|.++++|+.|...|+...
T Consensus       352 ~khkCr~CakvfgS~SaLqiHlRSHTGERP-fqCnvCG~~FSTkGNLKvH~~rH~e~~  408 (958)
T KOG1074|consen  352 FKHKCRFCAKVFGSDSALQIHLRSHTGERP-FQCNVCGNRFSTKGNLKVHFQRHREKY  408 (958)
T ss_pred             ccchhhhhHhhcCchhhhhhhhhccCCCCC-eeecccccccccccceeeeeeeccccC
Confidence            346899999999999999999999999855 999999999999999999998887653

>KOG3623|consensus

Probab=99.75  E-value=7.2e-19  Score=133.56  Aligned_cols=121  Identities=31%  Similarity=0.683  Sum_probs=100.2

Q ss_pred             CccccCccchhccChHHHHHHHHHHh-CCCCceeCCCCccccccchHHHhHHHHhcCCCCCCCCccccccccCCCCceec
Q psy16578         48 DVFACPKCSKTYLRQYTLNAHLRYEC-GKRPKFKCPHCNKKCHQKCNLKSHIALKHDQLLAPLAPRSYRRNSQLNGSFIC  126 (177)
Q Consensus        48 ~~~~C~~C~~~f~~~~~l~~H~~~h~-~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~C  126 (177)
                      ....|+.|++.+.+...|+.|++..+ .....|.|.+|...|.....|.+|+..|-......    ..-......+.|+|
T Consensus       209 qlltcpycdrgykrltslkeHikyrhekne~nfsC~lCsytFAyRtQLErhm~~hkpg~dqa----~sltqsa~lRKFKC  284 (1007)
T KOG3623|consen  209 QLLTCPYCDRGYKRLTSLKEHIKYRHEKNEPNFSCMLCSYTFAYRTQLERHMQLHKPGGDQA----ISLTQSALLRKFKC  284 (1007)
T ss_pred             hhhcchhHHHHHHHHHHHHHHHHHHHhhCCCCCcchhhhhhhhhHHHHHHHHHhhcCCCccc----ccccchhhhccccc
Confidence            44789999999999999999988654 44456999999999999999999998776532211    11122234567999


Q ss_pred             CCccccccChhHHHHHHHHhhCCCCCccCCCCcccccchhHHHHHHh
Q psy16578        127 PKCSNRYVYKHNLKQHLKFECGVEPQFKCPYCDKRCKLKGNLMSHIA  173 (177)
Q Consensus       127 ~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C~~~f~~~~~l~~H~~  173 (177)
                      ..|+|+|+.+..|..|+|+|.| ++||.|+.|+|+|+.+..+..||-
T Consensus       285 tECgKAFKfKHHLKEHlRIHSG-EKPfeCpnCkKRFSHSGSySSHmS  330 (1007)
T KOG3623|consen  285 TECGKAFKFKHHLKEHLRIHSG-EKPFECPNCKKRFSHSGSYSSHMS  330 (1007)
T ss_pred             cccchhhhhHHHHHhhheeecC-CCCcCCcccccccccCCccccccc
Confidence            9999999999999999999999 777999999999999999999985

>KOG1074|consensus

Probab=99.72  E-value=6.1e-18  Score=130.18  Aligned_cols=52  Identities=23%  Similarity=0.634  Sum_probs=48.8

Q ss_pred             eecCCccccccChhHHHHHHHHhhCCCCCccCCCCcccccchhHHHHHHhhhc
Q psy16578        124 FICPKCSNRYVYKHNLKQHLKFECGVEPQFKCPYCDKRCKLKGNLMSHIALKH  176 (177)
Q Consensus       124 ~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C~~~f~~~~~l~~H~~~~h  176 (177)
                      ..|..|++.|.....|..|+++|++ +++|.|.+|++.|..+.+|+.||.+|+
T Consensus       880 h~C~vCgk~FsSSsALqiH~rTHtg-~KPF~C~fC~~aFttrgnLKvHMgtH~  931 (958)
T KOG1074|consen  880 HVCNVCGKQFSSSAALEIHMRTHTG-PKPFFCHFCEEAFTTRGNLKVHMGTHM  931 (958)
T ss_pred             hhhccchhcccchHHHHHhhhcCCC-CCCccchhhhhhhhhhhhhhhhhcccc
Confidence            4599999999999999999999999 556999999999999999999999886

>KOG3608|consensus

Probab=99.71  E-value=1.5e-17  Score=117.12  Aligned_cols=107  Identities=24%  Similarity=0.622  Sum_probs=53.9

Q ss_pred             ccccCccchhccChHHHHHHHHHHhCCCCceeCCCCccccccchHHHhHHHHhcCCCCCCCCccccccccCCCCceecCC
Q psy16578         49 VFACPKCSKTYLRQYTLNAHLRYECGKRPKFKCPHCNKKCHQKCNLKSHIALKHDQLLAPLAPRSYRRNSQLNGSFICPK  128 (177)
Q Consensus        49 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~  128 (177)
                      +|.|..|.+.|.++..|..||..|..-   |+|+.|+-.....+.|.+|++..|.                .++||+|..
T Consensus       237 ~fqC~~C~KrFaTeklL~~Hv~rHvn~---ykCplCdmtc~~~ssL~~H~r~rHs----------------~dkpfKCd~  297 (467)
T KOG3608|consen  237 SFQCAQCFKRFATEKLLKSHVVRHVNC---YKCPLCDMTCSSASSLTTHIRYRHS----------------KDKPFKCDE  297 (467)
T ss_pred             chHHHHHHHHHhHHHHHHHHHHHhhhc---ccccccccCCCChHHHHHHHHhhhc----------------cCCCccccc
Confidence            344444444444444444444444322   4444444444444444444444443                456666666


Q ss_pred             ccccccChhHHHHHHHHhhCCCCCccCCC--CcccccchhHHHHHHhhhc
Q psy16578        129 CSNRYVYKHNLKQHLKFECGVEPQFKCPY--CDKRCKLKGNLMSHIALKH  176 (177)
Q Consensus       129 C~~~f~~~~~l~~H~~~h~~~~~~~~C~~--C~~~f~~~~~l~~H~~~~h  176 (177)
                      |++.|.+.+.|.+|...|.  +..|+|..  |.+.|.....|++|++.+|
T Consensus       298 Cd~~c~~esdL~kH~~~HS--~~~y~C~h~~C~~s~r~~~q~~~H~~evh  345 (467)
T KOG3608|consen  298 CDTRCVRESDLAKHVQVHS--KTVYQCEHPDCHYSVRTYTQMRRHFLEVH  345 (467)
T ss_pred             hhhhhccHHHHHHHHHhcc--ccceecCCCCCcHHHHHHHHHHHHHHHhc
Confidence            6666666666666666554  22245544  4444444444444444443

>KOG3608|consensus

Probab=99.68  E-value=9.5e-17  Score=113.08  Aligned_cols=112  Identities=23%  Similarity=0.557  Sum_probs=100.5

Q ss_pred             CccccCccchhccChHHHHHHHHHHhCCCCceeCCCCccccccchHHHhHHHHhcCCCCCCCCccccccccCCCCceecC
Q psy16578         48 DVFACPKCSKTYLRQYTLNAHLRYECGKRPKFKCPHCNKKCHQKCNLKSHIALKHDQLLAPLAPRSYRRNSQLNGSFICP  127 (177)
Q Consensus        48 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~  127 (177)
                      .-|+|++|+......++|..|++..+.+.+||+|..|++.|....+|.+|...|.                  +..|.|.
T Consensus       262 n~ykCplCdmtc~~~ssL~~H~r~rHs~dkpfKCd~Cd~~c~~esdL~kH~~~HS------------------~~~y~C~  323 (467)
T KOG3608|consen  262 NCYKCPLCDMTCSSASSLTTHIRYRHSKDKPFKCDECDTRCVRESDLAKHVQVHS------------------KTVYQCE  323 (467)
T ss_pred             hcccccccccCCCChHHHHHHHHhhhccCCCccccchhhhhccHHHHHHHHHhcc------------------ccceecC
Confidence            3489999999999999999999998888888999999999999999999997542                  4569997


Q ss_pred             C--ccccccChhHHHHHHHHhhC--CCCCccCCCCcccccchhHHHHHHhhhcC
Q psy16578        128 K--CSNRYVYKHNLKQHLKFECG--VEPQFKCPYCDKRCKLKGNLMSHIALKHT  177 (177)
Q Consensus       128 ~--C~~~f~~~~~l~~H~~~h~~--~~~~~~C~~C~~~f~~~~~l~~H~~~~h~  177 (177)
                      .  |..+|.+...+++|++.++.  ...+|.|..|++.|++..+|.+|++..|+
T Consensus       324 h~~C~~s~r~~~q~~~H~~evhEg~np~~Y~CH~Cdr~ft~G~~L~~HL~kkH~  377 (467)
T KOG3608|consen  324 HPDCHYSVRTYTQMRRHFLEVHEGNNPILYACHCCDRFFTSGKSLSAHLMKKHG  377 (467)
T ss_pred             CCCCcHHHHHHHHHHHHHHHhccCCCCCceeeecchhhhccchhHHHHHHHhhc
Confidence            6  99999999999999998873  35579999999999999999999998875

>KOG3623|consensus

Probab=99.65  E-value=3e-17  Score=124.89  Aligned_cols=78  Identities=26%  Similarity=0.585  Sum_probs=72.3

Q ss_pred             ceeCCCCccccccchHHHhHHHHhcCCCCCCCCccccccccCCCCceecCCccccccChhHHHHHHHHhhCCCCCccCCC
Q psy16578         78 KFKCPHCNKKCHQKCNLKSHIALKHDQLLAPLAPRSYRRNSQLNGSFICPKCSNRYVYKHNLKQHLKFECGVEPQFKCPY  157 (177)
Q Consensus        78 ~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~  157 (177)
                      +|.|.+|++.|...+.|.+|.=.|.                 +.+||+|..|.|+|+.+..|..|+|.|.| ++||+|+.
T Consensus       894 myaCDqCDK~FqKqSSLaRHKYEHs-----------------GqRPyqC~iCkKAFKHKHHLtEHkRLHSG-EKPfQCdK  955 (1007)
T KOG3623|consen  894 MYACDQCDKAFQKQSSLARHKYEHS-----------------GQRPYQCIICKKAFKHKHHLTEHKRLHSG-EKPFQCDK  955 (1007)
T ss_pred             cchHHHHHHHHHhhHHHHHhhhhhc-----------------CCCCcccchhhHhhhhhhhhhhhhhhccC-CCcchhhh
Confidence            6999999999999999999984444                 57999999999999999999999999999 77799999


Q ss_pred             CcccccchhHHHHHHh
Q psy16578        158 CDKRCKLKGNLMSHIA  173 (177)
Q Consensus       158 C~~~f~~~~~l~~H~~  173 (177)
                      |+|+|+.+..+.+||.
T Consensus       956 ClKRFSHSGSYSQHMN  971 (1007)
T KOG3623|consen  956 CLKRFSHSGSYSQHMN  971 (1007)
T ss_pred             hhhhcccccchHhhhc
Confidence            9999999999999984

>KOG3576|consensus

Probab=99.61  E-value=1.2e-16  Score=104.65  Aligned_cols=82  Identities=28%  Similarity=0.564  Sum_probs=74.9

Q ss_pred             ceeCCCCccccccchHHHhHHHHhcCCCCCCCCccccccccCCCCceecCCccccccChhHHHHHHHHhhCCCCCccCCC
Q psy16578         78 KFKCPHCNKKCHQKCNLKSHIALKHDQLLAPLAPRSYRRNSQLNGSFICPKCSNRYVYKHNLKQHLKFECGVEPQFKCPY  157 (177)
Q Consensus        78 ~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~  157 (177)
                      .|.|.+|++.|.-...|.+|++-|.                 .-+.+-|.+||+.|.+.-.|.+|+++|+|.++ |+|..
T Consensus       117 ~ftCrvCgK~F~lQRmlnrh~kch~-----------------~vkr~lct~cgkgfndtfdlkrh~rthtgvrp-ykc~~  178 (267)
T KOG3576|consen  117 SFTCRVCGKKFGLQRMLNRHLKCHS-----------------DVKRHLCTFCGKGFNDTFDLKRHTRTHTGVRP-YKCSL  178 (267)
T ss_pred             eeeeehhhhhhhHHHHHHHHhhhcc-----------------HHHHHHHhhccCcccchhhhhhhhccccCccc-cchhh
Confidence            4999999999999999999996554                 35789999999999999999999999999555 99999


Q ss_pred             CcccccchhHHHHHHhhhcC
Q psy16578        158 CDKRCKLKGNLMSHIALKHT  177 (177)
Q Consensus       158 C~~~f~~~~~l~~H~~~~h~  177 (177)
                      |++.|...-.|..|++..||
T Consensus       179 c~kaftqrcsleshl~kvhg  198 (267)
T KOG3576|consen  179 CEKAFTQRCSLESHLKKVHG  198 (267)
T ss_pred             hhHHHHhhccHHHHHHHHcC
Confidence            99999999999999998886

>KOG3993|consensus

Probab=99.45  E-value=1.8e-14  Score=103.81  Aligned_cols=130  Identities=22%  Similarity=0.410  Sum_probs=99.3

Q ss_pred             CCCccccCccchhccChHHHHHHHHHHhCCCCceeCCCCccccccchHHHhHHHHhcCCCCCC-------CCc----ccc
Q psy16578         46 GEDVFACPKCSKTYLRQYTLNAHLRYECGKRPKFKCPHCNKKCHQKCNLKSHIALKHDQLLAP-------LAP----RSY  114 (177)
Q Consensus        46 ~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~-------~~~----~~~  114 (177)
                      ..+.|.|.+|...|.....|.+|...-.-..- |+|++|++.|....+|..|.+.|-......       ...    ..-
T Consensus       264 ~iGdyiCqLCK~kYeD~F~LAQHrC~RIV~vE-YrCPEC~KVFsCPANLASHRRWHKPR~eaa~a~~~P~k~~~~~rae~  342 (500)
T KOG3993|consen  264 VIGDYICQLCKEKYEDAFALAQHRCPRIVHVE-YRCPECDKVFSCPANLASHRRWHKPRPEAAKAGSPPPKQAVETRAEV  342 (500)
T ss_pred             cHHHHHHHHHHHhhhhHHHHhhccCCeeEEee-ecCCcccccccCchhhhhhhcccCCchhhhhcCCCChhhhhhhhhhh
Confidence            33459999999999999999999765433334 999999999999999999999887532111       100    000


Q ss_pred             -----ccccCCCCceecCCccccccChhHHHHHHHHhhCC----------------------------------------
Q psy16578        115 -----RRNSQLNGSFICPKCSNRYVYKHNLKQHLKFECGV----------------------------------------  149 (177)
Q Consensus       115 -----~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~----------------------------------------  149 (177)
                           .-....++.|.|..|++.|.....|++|+.+|+..                                        
T Consensus       343 ~ea~rsg~dss~gi~~C~~C~KkFrRqAYLrKHqlthq~~~~~k~~a~~f~~s~~~~l~~~~~~~a~h~~a~~~~g~~vl  422 (500)
T KOG3993|consen  343 QEAERSGDDSSSGIFSCHTCGKKFRRQAYLRKHQLTHQRAPLAKEKAPKFLLSRVIPLMHFNQAVATHSSASDSHGDEVL  422 (500)
T ss_pred             hhccccCCcccCceeecHHhhhhhHHHHHHHHhHHhhhccccchhcccCcchhhccccccccccccccccccccccccee
Confidence                 01113456899999999999999999999888653                                        


Q ss_pred             ---------------------------------CCCccCCCCcccccchhHHHHHHhhhc
Q psy16578        150 ---------------------------------EPQFKCPYCDKRCKLKGNLMSHIALKH  176 (177)
Q Consensus       150 ---------------------------------~~~~~C~~C~~~f~~~~~l~~H~~~~h  176 (177)
                                                       +.-|.|.+|.-.|-++.+|.+|+...|
T Consensus       423 ~~a~sael~~pp~~~~ppsss~~sgg~~rlg~~~q~f~~ky~~atfyss~~ltrhin~~H  482 (500)
T KOG3993|consen  423 YVAGSAELELPPYDGSPPSSSGSSGGYGRLGIAEQGFTCKYCPATFYSSPGLTRHINKCH  482 (500)
T ss_pred             eeeccccccCCCCCCCCcccCCCCCccccccchhhccccccchHhhhcCcchHhHhhhcC
Confidence                                             114899999999999999999997765

>PHA00733 hypothetical protein

Probab=99.37  E-value=5.7e-13  Score=83.71  Aligned_cols=84  Identities=20%  Similarity=0.390  Sum_probs=65.0

Q ss_pred             CceeCCCCccccccchHHHhH--HHHhcCCCCCCCCccccccccCCCCceecCCccccccChhHHHHHHHHhhCCCCCcc
Q psy16578         77 PKFKCPHCNKKCHQKCNLKSH--IALKHDQLLAPLAPRSYRRNSQLNGSFICPKCSNRYVYKHNLKQHLKFECGVEPQFK  154 (177)
Q Consensus        77 ~~~~C~~C~~~f~~~~~l~~H--~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~  154 (177)
                      +++.|.+|...|.....|..+  +..+.              ....+++|.|..|++.|.....|..|++.|   ..+|.
T Consensus        39 ~~~~~~~~~~~~~~~~~l~~~~~l~~~~--------------~~~~~kPy~C~~Cgk~Fss~s~L~~H~r~h---~~~~~  101 (128)
T PHA00733         39 KRLIRAVVKTLIYNPQLLDESSYLYKLL--------------TSKAVSPYVCPLCLMPFSSSVSLKQHIRYT---EHSKV  101 (128)
T ss_pred             hhHHHHHHhhhccChhhhcchHHHHhhc--------------ccCCCCCccCCCCCCcCCCHHHHHHHHhcC---CcCcc
Confidence            348888888888777777666  22211              112367899999999999999999999876   23599


Q ss_pred             CCCCcccccchhHHHHHHhhhcC
Q psy16578        155 CPYCDKRCKLKGNLMSHIALKHT  177 (177)
Q Consensus       155 C~~C~~~f~~~~~l~~H~~~~h~  177 (177)
                      |.+|++.|....+|.+|++..|+
T Consensus       102 C~~CgK~F~~~~sL~~H~~~~h~  124 (128)
T PHA00733        102 CPVCGKEFRNTDSTLDHVCKKHN  124 (128)
T ss_pred             CCCCCCccCCHHHHHHHHHHhcC
Confidence            99999999999999999998885

>PLN03086 PRLI-interacting factor K; Provisional

Probab=99.36  E-value=2e-12  Score=98.52  Aligned_cols=104  Identities=20%  Similarity=0.400  Sum_probs=84.4

Q ss_pred             CCccccCccchhccChHHHHHHHHHHhCCCCceeCCCCccccccchHHHhHHHHhcCCCCCCCCccccccccCCCCceec
Q psy16578         47 EDVFACPKCSKTYLRQYTLNAHLRYECGKRPKFKCPHCNKKCHQKCNLKSHIALKHDQLLAPLAPRSYRRNSQLNGSFIC  126 (177)
Q Consensus        47 ~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~C  126 (177)
                      .+.+.|..|+..|. ...|..|+..++   .++.|+ ||..+ ....|..|+..+.                 ..+++.|
T Consensus       451 ~~H~~C~~Cgk~f~-~s~LekH~~~~H---kpv~Cp-Cg~~~-~R~~L~~H~~thC-----------------p~Kpi~C  507 (567)
T PLN03086        451 KNHVHCEKCGQAFQ-QGEMEKHMKVFH---EPLQCP-CGVVL-EKEQMVQHQASTC-----------------PLRLITC  507 (567)
T ss_pred             ccCccCCCCCCccc-hHHHHHHHHhcC---CCccCC-CCCCc-chhHHHhhhhccC-----------------CCCceeC
Confidence            34578999999996 678999999986   449999 99755 5688999986655                 4689999


Q ss_pred             CCcccccc----------ChhHHHHHHHHhhCCCCCccCCCCcccccchhHHHHHHhhhc
Q psy16578        127 PKCSNRYV----------YKHNLKQHLKFECGVEPQFKCPYCDKRCKLKGNLMSHIALKH  176 (177)
Q Consensus       127 ~~C~~~f~----------~~~~l~~H~~~h~~~~~~~~C~~C~~~f~~~~~l~~H~~~~h  176 (177)
                      .+|++.|.          ....|..|.... | .+++.|..|++.+..+ .|..|+-..|
T Consensus       508 ~fC~~~v~~g~~~~d~~d~~s~Lt~HE~~C-G-~rt~~C~~Cgk~Vrlr-dm~~H~~~~h  564 (567)
T PLN03086        508 RFCGDMVQAGGSAMDVRDRLRGMSEHESIC-G-SRTAPCDSCGRSVMLK-EMDIHQIAVH  564 (567)
T ss_pred             CCCCCccccCccccchhhhhhhHHHHHHhc-C-CcceEccccCCeeeeh-hHHHHHHHhh
Confidence            99999985          235899999886 5 6669999999999876 6888987766

>PHA00733 hypothetical protein

Probab=99.21  E-value=1.5e-11  Score=77.29  Aligned_cols=85  Identities=16%  Similarity=0.280  Sum_probs=67.5

Q ss_pred             CCCCccccCccchhccChHHHHHH--HHHH--hCCCCceeCCCCccccccchHHHhHHHHhcCCCCCCCCccccccccCC
Q psy16578         45 AGEDVFACPKCSKTYLRQYTLNAH--LRYE--CGKRPKFKCPHCNKKCHQKCNLKSHIALKHDQLLAPLAPRSYRRNSQL  120 (177)
Q Consensus        45 ~~~~~~~C~~C~~~f~~~~~l~~H--~~~h--~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~~~~~~~~~  120 (177)
                      ..++++.|.+|+..|.....|..+  ++.+  .....||.|+.|++.|.+...|..|+..+                   
T Consensus        36 ~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~kPy~C~~Cgk~Fss~s~L~~H~r~h-------------------   96 (128)
T PHA00733         36 PEQKRLIRAVVKTLIYNPQLLDESSYLYKLLTSKAVSPYVCPLCLMPFSSSVSLKQHIRYT-------------------   96 (128)
T ss_pred             hhhhhHHHHHHhhhccChhhhcchHHHHhhcccCCCCCccCCCCCCcCCCHHHHHHHHhcC-------------------
Confidence            345678999999999887777665  2221  12235699999999999999999998542                   


Q ss_pred             CCceecCCccccccChhHHHHHHHHhhC
Q psy16578        121 NGSFICPKCSNRYVYKHNLKQHLKFECG  148 (177)
Q Consensus       121 ~~~~~C~~C~~~f~~~~~l~~H~~~h~~  148 (177)
                      +.+|.|..|++.|.....|..|+...|+
T Consensus        97 ~~~~~C~~CgK~F~~~~sL~~H~~~~h~  124 (128)
T PHA00733         97 EHSKVCPVCGKEFRNTDSTLDHVCKKHN  124 (128)
T ss_pred             CcCccCCCCCCccCCHHHHHHHHHHhcC
Confidence            2458999999999999999999998765

>PHA02768 hypothetical protein; Provisional

Probab=99.20  E-value=7.7e-12  Score=65.42  Aligned_cols=44  Identities=20%  Similarity=0.558  Sum_probs=39.7

Q ss_pred             ceecCCccccccChhHHHHHHHHhhCCCCCccCCCCcccccchhHHH
Q psy16578        123 SFICPKCSNRYVYKHNLKQHLKFECGVEPQFKCPYCDKRCKLKGNLM  169 (177)
Q Consensus       123 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C~~~f~~~~~l~  169 (177)
                      .|.|+.||+.|...+.|..|+++|+   ++|+|..|++.|...+.|.
T Consensus         5 ~y~C~~CGK~Fs~~~~L~~H~r~H~---k~~kc~~C~k~f~~~s~l~   48 (55)
T PHA02768          5 GYECPICGEIYIKRKSMITHLRKHN---TNLKLSNCKRISLRTGEYI   48 (55)
T ss_pred             ccCcchhCCeeccHHHHHHHHHhcC---CcccCCcccceecccceeE
Confidence            5899999999999999999999997   4599999999999877653

>PHA02768 hypothetical protein; Provisional

Probab=99.02  E-value=1.2e-10  Score=60.92  Aligned_cols=43  Identities=21%  Similarity=0.592  Sum_probs=38.6

Q ss_pred             cccCccchhccChHHHHHHHHHHhCCCCceeCCCCccccccchHHH
Q psy16578         50 FACPKCSKTYLRQYTLNAHLRYECGKRPKFKCPHCNKKCHQKCNLK   95 (177)
Q Consensus        50 ~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C~~~f~~~~~l~   95 (177)
                      |.|+.||+.|....+|..|++.|.   ++|+|..|++.|...+.|.
T Consensus         6 y~C~~CGK~Fs~~~~L~~H~r~H~---k~~kc~~C~k~f~~~s~l~   48 (55)
T PHA02768          6 YECPICGEIYIKRKSMITHLRKHN---TNLKLSNCKRISLRTGEYI   48 (55)
T ss_pred             cCcchhCCeeccHHHHHHHHHhcC---CcccCCcccceecccceeE
Confidence            899999999999999999999998   3599999999998776654

>PLN03086 PRLI-interacting factor K; Provisional

Probab=98.93  E-value=1.1e-09  Score=83.87  Aligned_cols=103  Identities=17%  Similarity=0.452  Sum_probs=76.8

Q ss_pred             ccccCccchhccChHHHHHHHHHHhCC------------------CCceeCCCCccccccchHHHhHHHHhcCCCCCCCC
Q psy16578         49 VFACPKCSKTYLRQYTLNAHLRYECGK------------------RPKFKCPHCNKKCHQKCNLKSHIALKHDQLLAPLA  110 (177)
Q Consensus        49 ~~~C~~C~~~f~~~~~l~~H~~~h~~~------------------~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~  110 (177)
                      ...|.-|...... .+|..|...-...                  ...+.|+.|++.|. ...|..|+..+|        
T Consensus       407 ~V~C~NC~~~i~l-~~l~lHe~~C~r~~V~Cp~~~Cg~v~~r~el~~H~~C~~Cgk~f~-~s~LekH~~~~H--------  476 (567)
T PLN03086        407 TVECRNCKHYIPS-RSIALHEAYCSRHNVVCPHDGCGIVLRVEEAKNHVHCEKCGQAFQ-QGEMEKHMKVFH--------  476 (567)
T ss_pred             eEECCCCCCccch-hHHHHHHhhCCCcceeCCcccccceeeccccccCccCCCCCCccc-hHHHHHHHHhcC--------
Confidence            3468888877554 4777777543211                  12467899999885 577999987765        


Q ss_pred             ccccccccCCCCceecCCccccccChhHHHHHHHHhhCCCCCccCCCCccccc----------chhHHHHHHhhh
Q psy16578        111 PRSYRRNSQLNGSFICPKCSNRYVYKHNLKQHLKFECGVEPQFKCPYCDKRCK----------LKGNLMSHIALK  175 (177)
Q Consensus       111 ~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C~~~f~----------~~~~l~~H~~~~  175 (177)
                                 +++.|+ |++.+ .+..|..|+.+|.+ ++++.|.+|++.|.          ..+.|..|..+.
T Consensus       477 -----------kpv~Cp-Cg~~~-~R~~L~~H~~thCp-~Kpi~C~fC~~~v~~g~~~~d~~d~~s~Lt~HE~~C  537 (567)
T PLN03086        477 -----------EPLQCP-CGVVL-EKEQMVQHQASTCP-LRLITCRFCGDMVQAGGSAMDVRDRLRGMSEHESIC  537 (567)
T ss_pred             -----------CCccCC-CCCCc-chhHHHhhhhccCC-CCceeCCCCCCccccCccccchhhhhhhHHHHHHhc
Confidence                       468999 99765 67899999999988 66699999999985          235899998753

>PF13465 zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A 1TF6_A 1TF3_A 2ELT_A 2EOS_A 2EN2_A 2DMD_A 2WBS_A 2WBU_A 2EM5_A

Probab=98.90  E-value=9.2e-10  Score=49.43  Aligned_cols=26  Identities=42%  Similarity=0.982  Sum_probs=22.7

Q ss_pred             HHHHHHHHhhCCCCCccCCCCcccccc
Q psy16578        138 NLKQHLKFECGVEPQFKCPYCDKRCKL  164 (177)
Q Consensus       138 ~l~~H~~~h~~~~~~~~C~~C~~~f~~  164 (177)
                      +|..|+++|++ +++|.|++|++.|++
T Consensus         1 ~l~~H~~~H~~-~k~~~C~~C~k~F~~   26 (26)
T PF13465_consen    1 NLRRHMRTHTG-EKPYKCPYCGKSFSN   26 (26)
T ss_dssp             HHHHHHHHHSS-SSSEEESSSSEEESS
T ss_pred             CHHHHhhhcCC-CCCCCCCCCcCeeCc
Confidence            48999999999 566999999999974

...

>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins

Probab=98.83  E-value=8.2e-09  Score=55.07  Aligned_cols=52  Identities=31%  Similarity=0.621  Sum_probs=42.6

Q ss_pred             ceecCCccccccChhHHHHHHHHhhC-CCCCccCCCCcccccchhHHHHHHhhhcC
Q psy16578        123 SFICPKCSNRYVYKHNLKQHLKFECG-VEPQFKCPYCDKRCKLKGNLMSHIALKHT  177 (177)
Q Consensus       123 ~~~C~~C~~~f~~~~~l~~H~~~h~~-~~~~~~C~~C~~~f~~~~~l~~H~~~~h~  177 (177)
                      .|.|++|++ ..+...|..|....|. +.+.+.|++|...+.  .+|.+||..+|+
T Consensus         2 ~f~CP~C~~-~~~~~~L~~H~~~~H~~~~~~v~CPiC~~~~~--~~l~~Hl~~~H~   54 (54)
T PF05605_consen    2 SFTCPYCGK-GFSESSLVEHCEDEHRSESKNVVCPICSSRVT--DNLIRHLNSQHR   54 (54)
T ss_pred             CcCCCCCCC-ccCHHHHHHHHHhHCcCCCCCccCCCchhhhh--hHHHHHHHHhcC
Confidence            489999999 5567889999886554 445699999998655  499999999986

Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.

>KOG3993|consensus

Probab=98.78  E-value=1.1e-09  Score=79.56  Aligned_cols=81  Identities=21%  Similarity=0.488  Sum_probs=68.1

Q ss_pred             eeCCCCccccccchHHHhHHHHhcCCCCCCCCccccccccCCCCceecCCccccccChhHHHHHHHHhhCC---------
Q psy16578         79 FKCPHCNKKCHQKCNLKSHIALKHDQLLAPLAPRSYRRNSQLNGSFICPKCSNRYVYKHNLKQHLKFECGV---------  149 (177)
Q Consensus        79 ~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~---------  149 (177)
                      |+|.+|...|.....|.+|...-           .      .---|+|+.|+|.|.=..+|..|.+.|...         
T Consensus       268 yiCqLCK~kYeD~F~LAQHrC~R-----------I------V~vEYrCPEC~KVFsCPANLASHRRWHKPR~eaa~a~~~  330 (500)
T KOG3993|consen  268 YICQLCKEKYEDAFALAQHRCPR-----------I------VHVEYRCPECDKVFSCPANLASHRRWHKPRPEAAKAGSP  330 (500)
T ss_pred             HHHHHHHHhhhhHHHHhhccCCe-----------e------EEeeecCCcccccccCchhhhhhhcccCCchhhhhcCCC
Confidence            89999999999999999996211           0      112499999999999999999999998541         


Q ss_pred             -----------------------CCCccCCCCcccccchhHHHHHHhhhc
Q psy16578        150 -----------------------EPQFKCPYCDKRCKLKGNLMSHIALKH  176 (177)
Q Consensus       150 -----------------------~~~~~C~~C~~~f~~~~~l~~H~~~~h  176 (177)
                                             .--|.|.+|++.|.+...|+.|+.+||
T Consensus       331 P~k~~~~~rae~~ea~rsg~dss~gi~~C~~C~KkFrRqAYLrKHqlthq  380 (500)
T KOG3993|consen  331 PPKQAVETRAEVQEAERSGDDSSSGIFSCHTCGKKFRRQAYLRKHQLTHQ  380 (500)
T ss_pred             ChhhhhhhhhhhhhccccCCcccCceeecHHhhhhhHHHHHHHHhHHhhh
Confidence                                   013999999999999999999999887

>PHA00732 hypothetical protein

Probab=98.76  E-value=5.3e-09  Score=59.94  Aligned_cols=46  Identities=35%  Similarity=0.582  Sum_probs=39.5

Q ss_pred             ceecCCccccccChhHHHHHHHH-hhCCCCCccCCCCcccccchhHHHHHHhhh
Q psy16578        123 SFICPKCSNRYVYKHNLKQHLKF-ECGVEPQFKCPYCDKRCKLKGNLMSHIALK  175 (177)
Q Consensus       123 ~~~C~~C~~~f~~~~~l~~H~~~-h~~~~~~~~C~~C~~~f~~~~~l~~H~~~~  175 (177)
                      ||.|..|++.|.....|..|++. |.+    +.|+.|++.|.   +|.+|+.++
T Consensus         1 py~C~~Cgk~F~s~s~Lk~H~r~~H~~----~~C~~CgKsF~---~l~~H~~~~   47 (79)
T PHA00732          1 MFKCPICGFTTVTLFALKQHARRNHTL----TKCPVCNKSYR---RLNQHFYSQ   47 (79)
T ss_pred             CccCCCCCCccCCHHHHHHHhhcccCC----CccCCCCCEeC---Chhhhhccc
Confidence            58999999999999999999985 543    68999999998   588888653

>PHA00616 hypothetical protein

Probab=98.64  E-value=1.4e-08  Score=50.67  Aligned_cols=26  Identities=19%  Similarity=0.492  Sum_probs=21.8

Q ss_pred             CccCCCCcccccchhHHHHHHhhhcC
Q psy16578        152 QFKCPYCDKRCKLKGNLMSHIALKHT  177 (177)
Q Consensus       152 ~~~C~~C~~~f~~~~~l~~H~~~~h~  177 (177)
                      +|+|+.||+.|..+++|.+|++.|||
T Consensus         1 pYqC~~CG~~F~~~s~l~~H~r~~hg   26 (44)
T PHA00616          1 MYQCLRCGGIFRKKKEVIEHLLSVHK   26 (44)
T ss_pred             CCccchhhHHHhhHHHHHHHHHHhcC
Confidence            48888888888888888888888876

>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins

Probab=98.63  E-value=7.2e-08  Score=51.41  Aligned_cols=52  Identities=33%  Similarity=0.649  Sum_probs=41.9

Q ss_pred             eeCCCCccccccchHHHhHHHHhcCCCCCCCCccccccccCCCCceecCCccccccChhHHHHHHHHhhC
Q psy16578         79 FKCPHCNKKCHQKCNLKSHIALKHDQLLAPLAPRSYRRNSQLNGSFICPKCSNRYVYKHNLKQHLKFECG  148 (177)
Q Consensus        79 ~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~  148 (177)
                      |.|+.|++ ..+...|..|....|..               ..+.+.|+.|...+.  .+|..|+..+|+
T Consensus         3 f~CP~C~~-~~~~~~L~~H~~~~H~~---------------~~~~v~CPiC~~~~~--~~l~~Hl~~~H~   54 (54)
T PF05605_consen    3 FTCPYCGK-GFSESSLVEHCEDEHRS---------------ESKNVVCPICSSRVT--DNLIRHLNSQHR   54 (54)
T ss_pred             cCCCCCCC-ccCHHHHHHHHHhHCcC---------------CCCCccCCCchhhhh--hHHHHHHHHhcC
Confidence            89999999 55667899999888863               345789999998654  499999998764

Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.

>PF13465 zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A 1TF6_A 1TF3_A 2ELT_A 2EOS_A 2EN2_A 2DMD_A 2WBS_A 2WBU_A 2EM5_A

Probab=98.62  E-value=3.7e-08  Score=44.17  Aligned_cols=26  Identities=38%  Similarity=0.947  Sum_probs=22.7

Q ss_pred             HHHHHHHHHhCCCCceeCCCCcccccc
Q psy16578         64 TLNAHLRYECGKRPKFKCPHCNKKCHQ   90 (177)
Q Consensus        64 ~l~~H~~~h~~~~~~~~C~~C~~~f~~   90 (177)
                      +|..|++.|.++++ |.|++|++.|.+
T Consensus         1 ~l~~H~~~H~~~k~-~~C~~C~k~F~~   26 (26)
T PF13465_consen    1 NLRRHMRTHTGEKP-YKCPYCGKSFSN   26 (26)
T ss_dssp             HHHHHHHHHSSSSS-EEESSSSEEESS
T ss_pred             CHHHHhhhcCCCCC-CCCCCCcCeeCc
Confidence            58899999998866 999999999863

...

>PHA00616 hypothetical protein

Probab=98.58  E-value=2.5e-08  Score=49.75  Aligned_cols=35  Identities=17%  Similarity=0.360  Sum_probs=30.9

Q ss_pred             ceecCCccccccChhHHHHHHHHhhCCCCCccCCCC
Q psy16578        123 SFICPKCSNRYVYKHNLKQHLKFECGVEPQFKCPYC  158 (177)
Q Consensus       123 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C  158 (177)
                      ||.|..||+.|...+.|..|++.||++ .+|.|+.=
T Consensus         1 pYqC~~CG~~F~~~s~l~~H~r~~hg~-~~~~~~~~   35 (44)
T PHA00616          1 MYQCLRCGGIFRKKKEVIEHLLSVHKQ-NKLTLEYF   35 (44)
T ss_pred             CCccchhhHHHhhHHHHHHHHHHhcCC-CccceeEE
Confidence            589999999999999999999999995 55888753

>PHA00732 hypothetical protein

Probab=98.58  E-value=3.7e-08  Score=56.47  Aligned_cols=49  Identities=35%  Similarity=0.664  Sum_probs=40.2

Q ss_pred             ccccCccchhccChHHHHHHHHHHhCCCCceeCCCCccccccchHHHhHHHHhcC
Q psy16578         49 VFACPKCSKTYLRQYTLNAHLRYECGKRPKFKCPHCNKKCHQKCNLKSHIALKHD  103 (177)
Q Consensus        49 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~  103 (177)
                      +|.|..|++.|.+..+|..|++.++.   ++.|+.|++.|.   .+..|+..+.+
T Consensus         1 py~C~~Cgk~F~s~s~Lk~H~r~~H~---~~~C~~CgKsF~---~l~~H~~~~~~   49 (79)
T PHA00732          1 MFKCPICGFTTVTLFALKQHARRNHT---LTKCPVCNKSYR---RLNQHFYSQYD   49 (79)
T ss_pred             CccCCCCCCccCCHHHHHHHhhcccC---CCccCCCCCEeC---ChhhhhcccCC
Confidence            47899999999999999999985433   278999999997   58888855443

>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=98.49  E-value=6.3e-08  Score=42.16  Aligned_cols=22  Identities=41%  Similarity=0.818  Sum_probs=14.7

Q ss_pred             ccCCCCcccccchhHHHHHHhh
Q psy16578        153 FKCPYCDKRCKLKGNLMSHIAL  174 (177)
Q Consensus       153 ~~C~~C~~~f~~~~~l~~H~~~  174 (177)
                      |.|++|++.|++..+|.+|++.
T Consensus         1 y~C~~C~~~f~~~~~l~~H~~~   22 (23)
T PF00096_consen    1 YKCPICGKSFSSKSNLKRHMRR   22 (23)
T ss_dssp             EEETTTTEEESSHHHHHHHHHH
T ss_pred             CCCCCCCCccCCHHHHHHHHhH
Confidence            4566666666666666666665

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....

>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A

Probab=98.45  E-value=1.2e-07  Score=41.68  Aligned_cols=24  Identities=38%  Similarity=0.854  Sum_probs=16.6

Q ss_pred             ccCCCCcccccchhHHHHHHhhhc
Q psy16578        153 FKCPYCDKRCKLKGNLMSHIALKH  176 (177)
Q Consensus       153 ~~C~~C~~~f~~~~~l~~H~~~~h  176 (177)
                      |.|++|++.|.+...|..|++.+|
T Consensus         1 ~~C~~C~~~~~~~~~l~~H~~~~H   24 (24)
T PF13894_consen    1 FQCPICGKSFRSKSELRQHMRTHH   24 (24)
T ss_dssp             EE-SSTS-EESSHHHHHHHHHHHS
T ss_pred             CCCcCCCCcCCcHHHHHHHHHhhC
Confidence            567777777777777777777766

...

>PF12756 zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB: 2DMI_A

Probab=98.37  E-value=1.9e-07  Score=56.41  Aligned_cols=67  Identities=21%  Similarity=0.455  Sum_probs=18.7

Q ss_pred             eCCCCccccccchHHHhHHHHhcCCCCCCCC-----ccc-cccccCCCCceecCCccccccChhHHHHHHHHh
Q psy16578         80 KCPHCNKKCHQKCNLKSHIALKHDQLLAPLA-----PRS-YRRNSQLNGSFICPKCSNRYVYKHNLKQHLKFE  146 (177)
Q Consensus        80 ~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~-----~~~-~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h  146 (177)
                      .|..|+..|.+...|..|+...|+.......     ... ..........+.|..|++.|.+...|..||+.+
T Consensus         1 ~C~~C~~~f~~~~~l~~H~~~~H~~~~~~~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~f~s~~~l~~Hm~~~   73 (100)
T PF12756_consen    1 QCLFCDESFSSVDDLLQHMKKKHGFDIPDQKYLVDPNRLLNYLRKKVKESFRCPYCNKTFRSREALQEHMRSK   73 (100)
T ss_dssp             ------------------------------------------------SSEEBSSSS-EESSHHHHHHHHHHT
T ss_pred             CccccccccccccccccccccccccccccccccccccccccccccccCCCCCCCccCCCCcCHHHHHHHHcCc
Confidence            3777888888888888888777764322000     000 000111123578888888888888888888865

>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=98.31  E-value=6.2e-07  Score=38.93  Aligned_cols=23  Identities=35%  Similarity=0.853  Sum_probs=21.6

Q ss_pred             eecCCccccccChhHHHHHHHHh
Q psy16578        124 FICPKCSNRYVYKHNLKQHLKFE  146 (177)
Q Consensus       124 ~~C~~C~~~f~~~~~l~~H~~~h  146 (177)
                      |.|+.|++.|.++..|..|++.|
T Consensus         1 y~C~~C~~~f~~~~~l~~H~~~H   23 (23)
T PF00096_consen    1 YKCPICGKSFSSKSNLKRHMRRH   23 (23)
T ss_dssp             EEETTTTEEESSHHHHHHHHHHH
T ss_pred             CCCCCCCCccCCHHHHHHHHhHC
Confidence            68999999999999999999875

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....

>PF13912 zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9_A 2L1O_A 1NJQ_A 2EN8_A 2EMM_A 1FV5_A 1Y0J_B 2L6Z_B

Probab=98.28  E-value=3.9e-07  Score=41.26  Aligned_cols=25  Identities=24%  Similarity=0.387  Sum_probs=17.0

Q ss_pred             CccCCCCcccccchhHHHHHHhhhc
Q psy16578        152 QFKCPYCDKRCKLKGNLMSHIALKH  176 (177)
Q Consensus       152 ~~~C~~C~~~f~~~~~l~~H~~~~h  176 (177)
                      +|.|..|++.|.+..+|..|++.|+
T Consensus         1 ~~~C~~C~~~F~~~~~l~~H~~~h~   25 (27)
T PF13912_consen    1 PFECDECGKTFSSLSALREHKRSHC   25 (27)
T ss_dssp             SEEETTTTEEESSHHHHHHHHCTTT
T ss_pred             CCCCCccCCccCChhHHHHHhHHhc
Confidence            3667777777777777777776665

>PF12756 zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB: 2DMI_A

Probab=98.17  E-value=1.6e-06  Score=52.36  Aligned_cols=51  Identities=27%  Similarity=0.595  Sum_probs=21.2

Q ss_pred             ccCccchhccChHHHHHHHHHHhCCC----------------------CceeCCCCccccccchHHHhHHHHh
Q psy16578         51 ACPKCSKTYLRQYTLNAHLRYECGKR----------------------PKFKCPHCNKKCHQKCNLKSHIALK  101 (177)
Q Consensus        51 ~C~~C~~~f~~~~~l~~H~~~h~~~~----------------------~~~~C~~C~~~f~~~~~l~~H~~~~  101 (177)
                      +|.+|+..|.+...|..||...|+..                      ..+.|..|++.|.+...|..|++.+
T Consensus         1 ~C~~C~~~f~~~~~l~~H~~~~H~~~~~~~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~f~s~~~l~~Hm~~~   73 (100)
T PF12756_consen    1 QCLFCDESFSSVDDLLQHMKKKHGFDIPDQKYLVDPNRLLNYLRKKVKESFRCPYCNKTFRSREALQEHMRSK   73 (100)
T ss_dssp             ------------------------------------------------SSEEBSSSS-EESSHHHHHHHHHHT
T ss_pred             CccccccccccccccccccccccccccccccccccccccccccccccCCCCCCCccCCCCcCHHHHHHHHcCc
Confidence            48999999999999999997766421                      1489999999999999999999865

>PF13909 zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W_A

Probab=98.08  E-value=2.1e-06  Score=37.63  Aligned_cols=24  Identities=38%  Similarity=0.794  Sum_probs=17.9

Q ss_pred             ccCCCCcccccchhHHHHHHhhhcC
Q psy16578        153 FKCPYCDKRCKLKGNLMSHIALKHT  177 (177)
Q Consensus       153 ~~C~~C~~~f~~~~~l~~H~~~~h~  177 (177)
                      |+|..|++..+ ...|.+|++.+|+
T Consensus         1 y~C~~C~y~t~-~~~l~~H~~~~H~   24 (24)
T PF13909_consen    1 YKCPHCSYSTS-KSNLKRHLKRHHP   24 (24)
T ss_dssp             EE-SSSS-EES-HHHHHHHHHHHHS
T ss_pred             CCCCCCCCcCC-HHHHHHHHHhhCc
Confidence            67888888887 7788888888875

>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A

Probab=98.07  E-value=4.2e-06  Score=36.47  Aligned_cols=24  Identities=33%  Similarity=0.798  Sum_probs=20.5

Q ss_pred             eecCCccccccChhHHHHHHHHhh
Q psy16578        124 FICPKCSNRYVYKHNLKQHLKFEC  147 (177)
Q Consensus       124 ~~C~~C~~~f~~~~~l~~H~~~h~  147 (177)
                      |.|..|++.|.+...|..|+.+|+
T Consensus         1 ~~C~~C~~~~~~~~~l~~H~~~~H   24 (24)
T PF13894_consen    1 FQCPICGKSFRSKSELRQHMRTHH   24 (24)
T ss_dssp             EE-SSTS-EESSHHHHHHHHHHHS
T ss_pred             CCCcCCCCcCCcHHHHHHHHHhhC
Confidence            689999999999999999999875

...

>PF09237 GAGA: GAGA factor; InterPro: IPR015318 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=98.02  E-value=2.1e-06  Score=43.77  Aligned_cols=32  Identities=25%  Similarity=0.526  Sum_probs=14.2

Q ss_pred             HhhCCCCCccCCCCcccccchhHHHHHHhhhc
Q psy16578        145 FECGVEPQFKCPYCDKRCKLKGNLMSHIALKH  176 (177)
Q Consensus       145 ~h~~~~~~~~C~~C~~~f~~~~~l~~H~~~~h  176 (177)
                      .+...+.|-.|++|+..+....+|++|+++.|
T Consensus        17 ~~~~S~~PatCP~C~a~~~~srnLrRHle~~H   48 (54)
T PF09237_consen   17 SKSQSEQPATCPICGAVIRQSRNLRRHLEIRH   48 (54)
T ss_dssp             CCCTTS--EE-TTT--EESSHHHHHHHHHHHT
T ss_pred             HhhccCCCCCCCcchhhccchhhHHHHHHHHh
Confidence            33334444555555555555555555555554

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. Members of this entry bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1YUI_A 1YUJ_A.

>PF13912 zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9_A 2L1O_A 1NJQ_A 2EN8_A 2EMM_A 1FV5_A 1Y0J_B 2L6Z_B

Probab=97.99  E-value=4.4e-06  Score=37.72  Aligned_cols=26  Identities=23%  Similarity=0.684  Sum_probs=23.8

Q ss_pred             ceecCCccccccChhHHHHHHHHhhC
Q psy16578        123 SFICPKCSNRYVYKHNLKQHLKFECG  148 (177)
Q Consensus       123 ~~~C~~C~~~f~~~~~l~~H~~~h~~  148 (177)
                      +|.|..|++.|.+...|..|++.|..
T Consensus         1 ~~~C~~C~~~F~~~~~l~~H~~~h~~   26 (27)
T PF13912_consen    1 PFECDECGKTFSSLSALREHKRSHCS   26 (27)
T ss_dssp             SEEETTTTEEESSHHHHHHHHCTTTT
T ss_pred             CCCCCccCCccCChhHHHHHhHHhcC
Confidence            58999999999999999999998854

>smart00355 ZnF_C2H2 zinc finger

Probab=97.80  E-value=1.8e-05  Score=35.01  Aligned_cols=23  Identities=35%  Similarity=0.733  Sum_probs=18.5

Q ss_pred             ccCCCCcccccchhHHHHHHhhh
Q psy16578        153 FKCPYCDKRCKLKGNLMSHIALK  175 (177)
Q Consensus       153 ~~C~~C~~~f~~~~~l~~H~~~~  175 (177)
                      |.|..|++.|.....|..|++.|
T Consensus         1 ~~C~~C~~~f~~~~~l~~H~~~H   23 (26)
T smart00355        1 YRCPECGKVFKSKSALKEHMRTH   23 (26)
T ss_pred             CCCCCCcchhCCHHHHHHHHHHh
Confidence            57888888888888888888754

>COG5189 SFP1 Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]

Probab=97.79  E-value=1.2e-05  Score=57.09  Aligned_cols=67  Identities=30%  Similarity=0.519  Sum_probs=45.7

Q ss_pred             CceeCCC--CccccccchHHHhHHHHhcCCCCC--CCCccccccccCCCCceecCCccccccChhHHHHHH
Q psy16578         77 PKFKCPH--CNKKCHQKCNLKSHIALKHDQLLA--PLAPRSYRRNSQLNGSFICPKCSNRYVYKHNLKQHL  143 (177)
Q Consensus        77 ~~~~C~~--C~~~f~~~~~l~~H~~~~~~~~~~--~~~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~  143 (177)
                      +||+|++  |.+.++....|+=|+..-|.....  ...+.........+|||.|.+|+|++++.-.|.-|+
T Consensus       348 KpykCpV~gC~K~YknqnGLKYH~lhGH~~~~~~~~p~p~~~~~F~~~~KPYrCevC~KRYKNlNGLKYHr  418 (423)
T COG5189         348 KPYKCPVEGCNKKYKNQNGLKYHMLHGHQNQKLHENPSPEKMNIFSAKDKPYRCEVCDKRYKNLNGLKYHR  418 (423)
T ss_pred             ceecCCCCCchhhhccccchhhhhhccccCcccCCCCCccccccccccCCceeccccchhhccCccceecc
Confidence            5699988  889999999999997655532211  111111112234568999999999999888887774

>PF09237 GAGA: GAGA factor; InterPro: IPR015318 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=97.67  E-value=2.7e-05  Score=39.80  Aligned_cols=32  Identities=25%  Similarity=0.529  Sum_probs=13.8

Q ss_pred             HhCCCCceeCCCCccccccchHHHhHHHHhcC
Q psy16578         72 ECGKRPKFKCPHCNKKCHQKCNLKSHIALKHD  103 (177)
Q Consensus        72 h~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~  103 (177)
                      +.....|-.|++|+..+.+..+|++|+...|+
T Consensus        18 ~~~S~~PatCP~C~a~~~~srnLrRHle~~H~   49 (54)
T PF09237_consen   18 KSQSEQPATCPICGAVIRQSRNLRRHLEIRHF   49 (54)
T ss_dssp             CCTTS--EE-TTT--EESSHHHHHHHHHHHTT
T ss_pred             hhccCCCCCCCcchhhccchhhHHHHHHHHhc
Confidence            33333445555555555555555555555554

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. Members of this entry bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1YUI_A 1YUJ_A.

>PF12874 zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG_A

Probab=97.64  E-value=2.6e-05  Score=34.41  Aligned_cols=23  Identities=30%  Similarity=0.626  Sum_probs=16.9

Q ss_pred             ccCCCCcccccchhHHHHHHhhh
Q psy16578        153 FKCPYCDKRCKLKGNLMSHIALK  175 (177)
Q Consensus       153 ~~C~~C~~~f~~~~~l~~H~~~~  175 (177)
                      |.|.+|++.|++...|..|++.+
T Consensus         1 ~~C~~C~~~f~s~~~~~~H~~s~   23 (25)
T PF12874_consen    1 FYCDICNKSFSSENSLRQHLRSK   23 (25)
T ss_dssp             EEETTTTEEESSHHHHHHHHTTH
T ss_pred             CCCCCCCCCcCCHHHHHHHHCcC
Confidence            56777777777777777777653

>KOG2231|consensus

Probab=97.55  E-value=0.0002  Score=56.49  Aligned_cols=107  Identities=22%  Similarity=0.493  Sum_probs=69.3

Q ss_pred             cccCccchhcc---------------ChHHHHHHHHHHhCCCCceeCCCCcc---------ccccchHHHhHHHHhcCCC
Q psy16578         50 FACPKCSKTYL---------------RQYTLNAHLRYECGKRPKFKCPHCNK---------KCHQKCNLKSHIALKHDQL  105 (177)
Q Consensus        50 ~~C~~C~~~f~---------------~~~~l~~H~~~h~~~~~~~~C~~C~~---------~f~~~~~l~~H~~~~~~~~  105 (177)
                      +.|.+|+..|.               ....|+.|+..-|..   +.|.+|-.         ...+...|..|++.-..  
T Consensus       100 ~~C~~C~~~~~~~~~~~~~~~c~~~~s~~~Lk~H~~~~H~~---~~c~lC~~~~kif~~e~k~Yt~~el~~h~~~gd~--  174 (669)
T KOG2231|consen  100 HSCHICDRRFRALYNKKECLHCTEFKSVENLKNHMRDQHKL---HLCSLCLQNLKIFINERKLYTRAELNLHLMFGDP--  174 (669)
T ss_pred             hhcCccccchhhhcccCCCccccchhHHHHHHHHHHHhhhh---hccccccccceeeeeeeehehHHHHHHHHhcCCC--
Confidence            46777776662               566778888665543   55666521         22344566667643221  


Q ss_pred             CCCCCccccccccCCCCceecCCccccccChhHHHHHHHHhhCCCCCccCCCC------cccccchhHHHHHHhhhc
Q psy16578        106 LAPLAPRSYRRNSQLNGSFICPKCSNRYVYKHNLKQHLKFECGVEPQFKCPYC------DKRCKLKGNLMSHIALKH  176 (177)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C------~~~f~~~~~l~~H~~~~h  176 (177)
                          +...      -.+--.|.+|...|.....|++|++.+|     |.|..|      +..|+..+.|..|.|..|
T Consensus       175 ----d~~s------~rGhp~C~~C~~~fld~~el~rH~~~~h-----~~chfC~~~~~~neyy~~~~dLe~HfR~~H  236 (669)
T KOG2231|consen  175 ----DDES------CRGHPLCKFCHERFLDDDELYRHLRFDH-----EFCHFCDYKTGQNEYYNDYDDLEEHFRKGH  236 (669)
T ss_pred             ----cccc------ccCCccchhhhhhhccHHHHHHhhccce-----eheeecCcccccchhcccchHHHHHhhhcC
Confidence                0111      0112479999999999999999998654     556666      356888899999999877

>KOG1146|consensus

Probab=97.53  E-value=6.4e-05  Score=62.68  Aligned_cols=124  Identities=19%  Similarity=0.293  Sum_probs=91.5

Q ss_pred             ccCccchhccChHHHHHHHHHHhCCCCceeCCCCccccccchHHHhHHHHhcCCCCCCCCcc--------ccccccCCCC
Q psy16578         51 ACPKCSKTYLRQYTLNAHLRYECGKRPKFKCPHCNKKCHQKCNLKSHIALKHDQLLAPLAPR--------SYRRNSQLNG  122 (177)
Q Consensus        51 ~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~--------~~~~~~~~~~  122 (177)
                      .|.-|+..+.+...+..|+..-+...+-|+|+.|+..|.....|..|++..|.......+..        .-..-..+.+
T Consensus       438 e~~~~e~~~~s~r~~~~~t~~L~S~~kt~~cpkc~~~yk~a~~L~vhmRskhp~~~~~~c~~gq~~~~~arg~~~~~~~~  517 (1406)
T KOG1146|consen  438 ELTKAEPLLESKRSLEGQTVVLHSFFKTLKCPKCNWHYKLAQTLGVHMRSKHPESQSAYCKAGQNHPRLARGEVYRCPGK  517 (1406)
T ss_pred             cccchhhhhhhhcccccceeeeecccccccCCccchhhhhHHHhhhcccccccccchhHhHhccccccccccccccCCCC
Confidence            56677778887777777776654444559999999999999999999999775433311111        0011223457


Q ss_pred             ceecCCccccccChhHHHHHHHHh--hCC----------------------------------------CCCccCCCCcc
Q psy16578        123 SFICPKCSNRYVYKHNLKQHLKFE--CGV----------------------------------------EPQFKCPYCDK  160 (177)
Q Consensus       123 ~~~C~~C~~~f~~~~~l~~H~~~h--~~~----------------------------------------~~~~~C~~C~~  160 (177)
                      +|.|..|...+....+|.+|+..-  ...                                        ++.+.|.+|++
T Consensus       518 p~~C~~C~~stttng~LsihlqS~~h~~~lee~~~~~g~~v~~~~~~v~s~~P~~ag~~~~ags~~pktkP~~~C~vc~y  597 (1406)
T KOG1146|consen  518 PYPCRACNYSTTTNGNLSIHLQSDLHRNELEEAEENAGEQVRLLPASVTSAVPEEAGLGPSAGSSGPKTKPSWRCEVCSY  597 (1406)
T ss_pred             cccceeeeeeeecchHHHHHHHHHhhHHHHHHHHhccccchhhhhhhhcccCcccccCCCCCCCCCCCCCCCcchhhhcc
Confidence            899999999999999999998852  111                                        34699999999


Q ss_pred             cccchhHHHHHHhh
Q psy16578        161 RCKLKGNLMSHIAL  174 (177)
Q Consensus       161 ~f~~~~~l~~H~~~  174 (177)
                      .-+-..+|+.||..
T Consensus       598 etniarnlrihmts  611 (1406)
T KOG1146|consen  598 ETNIARNLRIHMTA  611 (1406)
T ss_pred             hhhhhhcccccccc
Confidence            99999999999863

>COG5189 SFP1 Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]

Probab=97.47  E-value=4e-05  Score=54.51  Aligned_cols=53  Identities=28%  Similarity=0.611  Sum_probs=43.8

Q ss_pred             CCceecCC--ccccccChhHHHHHHHHhhC------------------CCCCccCCCCcccccchhHHHHHHh
Q psy16578        121 NGSFICPK--CSNRYVYKHNLKQHLKFECG------------------VEPQFKCPYCDKRCKLKGNLMSHIA  173 (177)
Q Consensus       121 ~~~~~C~~--C~~~f~~~~~l~~H~~~h~~------------------~~~~~~C~~C~~~f~~~~~l~~H~~  173 (177)
                      ++||+|++  |.|.+++.-.|.-|+.--|.                  +.+||.|.+|+|+++....|+-|..
T Consensus       347 ~KpykCpV~gC~K~YknqnGLKYH~lhGH~~~~~~~~p~p~~~~~F~~~~KPYrCevC~KRYKNlNGLKYHr~  419 (423)
T COG5189         347 GKPYKCPVEGCNKKYKNQNGLKYHMLHGHQNQKLHENPSPEKMNIFSAKDKPYRCEVCDKRYKNLNGLKYHRK  419 (423)
T ss_pred             CceecCCCCCchhhhccccchhhhhhccccCcccCCCCCccccccccccCCceeccccchhhccCccceeccc
Confidence            58999975  99999999999999874221                  1468999999999999988888764

>smart00355 ZnF_C2H2 zinc finger

Probab=97.41  E-value=0.00015  Score=31.85  Aligned_cols=24  Identities=29%  Similarity=0.782  Sum_probs=21.8

Q ss_pred             eecCCccccccChhHHHHHHHHhh
Q psy16578        124 FICPKCSNRYVYKHNLKQHLKFEC  147 (177)
Q Consensus       124 ~~C~~C~~~f~~~~~l~~H~~~h~  147 (177)
                      |.|..|++.|.....|..|++.|.
T Consensus         1 ~~C~~C~~~f~~~~~l~~H~~~H~   24 (26)
T smart00355        1 YRCPECGKVFKSKSALKEHMRTHX   24 (26)
T ss_pred             CCCCCCcchhCCHHHHHHHHHHhc
Confidence            579999999999999999999764

>PF12171 zf-C2H2_jaz: Zinc-finger double-stranded RNA-binding; InterPro: IPR022755 This zinc finger is found in archaea and eukaryotes, and is approximately 30 amino acids in length

Probab=97.41  E-value=5.2e-05  Score=34.12  Aligned_cols=22  Identities=32%  Similarity=0.597  Sum_probs=18.5

Q ss_pred             ccCCCCcccccchhHHHHHHhh
Q psy16578        153 FKCPYCDKRCKLKGNLMSHIAL  174 (177)
Q Consensus       153 ~~C~~C~~~f~~~~~l~~H~~~  174 (177)
                      |.|..|++.|++..+|..|++.
T Consensus         2 ~~C~~C~k~f~~~~~~~~H~~s   23 (27)
T PF12171_consen    2 FYCDACDKYFSSENQLKQHMKS   23 (27)
T ss_dssp             CBBTTTTBBBSSHHHHHCCTTS
T ss_pred             CCcccCCCCcCCHHHHHHHHcc
Confidence            7888888888888888888864

The mammalian members of this group occur multiple times along the protein, joined by flexible linkers, and are referred to as JAZ - dsRNA-binding ZF protein - zinc-fingers. The JAZ proteins are expressed in all tissues tested and localise in the nucleus, particularly the nucleolus []. JAZ preferentially binds to double-stranded (ds) RNA or RNA/DNA hybrids rather than DNA. In addition to binding double-stranded RNA, these zinc-fingers are required for nucleolar localisation. This entry represents the multiple-adjacent-C2H2 zinc finger, JAZ. ; PDB: 4DGW_A 1ZR9_A.

>PF13909 zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W_A

Probab=97.39  E-value=0.00021  Score=31.07  Aligned_cols=24  Identities=46%  Similarity=0.762  Sum_probs=19.7

Q ss_pred             eecCCccccccChhHHHHHHHHhhC
Q psy16578        124 FICPKCSNRYVYKHNLKQHLKFECG  148 (177)
Q Consensus       124 ~~C~~C~~~f~~~~~l~~H~~~h~~  148 (177)
                      |.|..|+.... ...|.+|++.|++
T Consensus         1 y~C~~C~y~t~-~~~l~~H~~~~H~   24 (24)
T PF13909_consen    1 YKCPHCSYSTS-KSNLKRHLKRHHP   24 (24)
T ss_dssp             EE-SSSS-EES-HHHHHHHHHHHHS
T ss_pred             CCCCCCCCcCC-HHHHHHHHHhhCc
Confidence            68999999998 8899999999864

>PRK04860 hypothetical protein; Provisional

Probab=97.35  E-value=0.0005  Score=45.07  Aligned_cols=40  Identities=23%  Similarity=0.615  Sum_probs=33.8

Q ss_pred             CceecCCccccccChhHHHHHHHHhhCCCCCccCCCCcccccchh
Q psy16578        122 GSFICPKCSNRYVYKHNLKQHLKFECGVEPQFKCPYCDKRCKLKG  166 (177)
Q Consensus       122 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C~~~f~~~~  166 (177)
                      -+|.|. |+.   ....+++|.++|.+ +++|.|..|+..|....
T Consensus       118 ~~Y~C~-C~~---~~~~~rrH~ri~~g-~~~YrC~~C~~~l~~~~  157 (160)
T PRK04860        118 FPYRCK-CQE---HQLTVRRHNRVVRG-EAVYRCRRCGETLVFKG  157 (160)
T ss_pred             EEEEcC-CCC---eeCHHHHHHHHhcC-CccEECCCCCceeEEec
Confidence            579998 987   67889999999999 55599999999887654

>PF12874 zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG_A

Probab=97.21  E-value=0.00027  Score=31.01  Aligned_cols=23  Identities=30%  Similarity=0.782  Sum_probs=21.2

Q ss_pred             eecCCccccccChhHHHHHHHHh
Q psy16578        124 FICPKCSNRYVYKHNLKQHLKFE  146 (177)
Q Consensus       124 ~~C~~C~~~f~~~~~l~~H~~~h  146 (177)
                      |.|..|++.|.+...|..|++.+
T Consensus         1 ~~C~~C~~~f~s~~~~~~H~~s~   23 (25)
T PF12874_consen    1 FYCDICNKSFSSENSLRQHLRSK   23 (25)
T ss_dssp             EEETTTTEEESSHHHHHHHHTTH
T ss_pred             CCCCCCCCCcCCHHHHHHHHCcC
Confidence            68999999999999999999865

>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=96.93  E-value=0.0014  Score=47.46  Aligned_cols=101  Identities=24%  Similarity=0.483  Sum_probs=64.9

Q ss_pred             cccCc--cchhccChHHHHHHHHHHhCCCCceeCCCCc---cccccc------hHHHhHHHHhcCCCCCCCCcccccccc
Q psy16578         50 FACPK--CSKTYLRQYTLNAHLRYECGKRPKFKCPHCN---KKCHQK------CNLKSHIALKHDQLLAPLAPRSYRRNS  118 (177)
Q Consensus        50 ~~C~~--C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C~---~~f~~~------~~l~~H~~~~~~~~~~~~~~~~~~~~~  118 (177)
                      |.|+.  |.........|..|.+..|+.   +.|.+|-   +.|+.+      ..|+.|...-                 
T Consensus       152 F~CP~skc~~~C~~~k~lk~H~K~~H~~---~~C~~C~~nKk~F~~E~~lF~~~~Lr~H~~~G-----------------  211 (493)
T COG5236         152 FKCPKSKCHRRCGSLKELKKHYKAQHGF---VLCSECIGNKKDFWNEIRLFRSSTLRDHKNGG-----------------  211 (493)
T ss_pred             hcCCchhhhhhhhhHHHHHHHHHhhcCc---EEhHhhhcCcccCccceeeeecccccccccCC-----------------
Confidence            66755  666666667788888877764   7788873   345433      3455453111                 


Q ss_pred             CCCCce----ecCCccccccChhHHHHHHHHhhCCCCCccCCCCc-------ccccchhHHHHHHhhh
Q psy16578        119 QLNGSF----ICPKCSNRYVYKHNLKQHLKFECGVEPQFKCPYCD-------KRCKLKGNLMSHIALK  175 (177)
Q Consensus       119 ~~~~~~----~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C~-------~~f~~~~~l~~H~~~~  175 (177)
                      ..+.+|    .|.+|...|-+-+.|..|++..|.  +   |.+|+       +.|++...|.+|.+--
T Consensus       212 ~~e~GFKGHP~C~FC~~~FYdDDEL~~HcR~~HE--~---ChICD~v~p~~~QYFK~Y~~Le~HF~~~  274 (493)
T COG5236         212 LEEEGFKGHPLCIFCKIYFYDDDELRRHCRLRHE--A---CHICDMVGPIRYQYFKSYEDLEAHFRNA  274 (493)
T ss_pred             ccccCcCCCchhhhccceecChHHHHHHHHhhhh--h---hhhhhccCccchhhhhCHHHHHHHhhcC
Confidence            111123    699999999999999999996543  3   44443       3577777888887643

>KOG2785|consensus

Probab=96.86  E-value=0.0016  Score=47.70  Aligned_cols=53  Identities=17%  Similarity=0.266  Sum_probs=46.4

Q ss_pred             CceecCCccccccChhHHHHHHHHhhCC----------------------CCCccCCCCc---ccccchhHHHHHHhh
Q psy16578        122 GSFICPKCSNRYVYKHNLKQHLKFECGV----------------------EPQFKCPYCD---KRCKLKGNLMSHIAL  174 (177)
Q Consensus       122 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~----------------------~~~~~C~~C~---~~f~~~~~l~~H~~~  174 (177)
                      .|-.|.+|++.+.+-..-..||..+||-                      ..-|.|..|.   +.|.+-.+.+.||+.
T Consensus       165 ~Pt~CLfC~~~~k~~e~~~~HM~~~HgffIPdreYL~D~~GLl~YLgeKV~~~~~CL~CN~~~~~f~sleavr~HM~~  242 (390)
T KOG2785|consen  165 IPTDCLFCDKKSKSLEENLKHMFKEHGFFIPDREYLTDEKGLLKYLGEKVGIGFICLFCNELGRPFSSLEAVRAHMRD  242 (390)
T ss_pred             CCcceeecCCCcccHHHHHHHHhhccCCcCCchHhhhchhHHHHHHHHHhccCceEEEeccccCcccccHHHHHHHhh
Confidence            4567999999999999999999999885                      2248899998   999999999999974

>KOG2893|consensus

Probab=96.69  E-value=0.00039  Score=47.65  Aligned_cols=50  Identities=26%  Similarity=0.440  Sum_probs=38.6

Q ss_pred             CCCceecCCccccccChhHHHHHHHHhhCCCCCccCCCCcccccchhHHHHHHhhh
Q psy16578        120 LNGSFICPKCSNRYVYKHNLKQHLKFECGVEPQFKCPYCDKRCKLKGNLMSHIALK  175 (177)
Q Consensus       120 ~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C~~~f~~~~~l~~H~~~~  175 (177)
                      ..++| |.+|++.|.+..-|++|++     -+.|+|.+|.+..-+--.|..|--..
T Consensus         8 ~~kpw-cwycnrefddekiliqhqk-----akhfkchichkkl~sgpglsihcmqv   57 (341)
T KOG2893|consen    8 VDKPW-CWYCNREFDDEKILIQHQK-----AKHFKCHICHKKLFSGPGLSIHCMQV   57 (341)
T ss_pred             cCCce-eeecccccchhhhhhhhhh-----hccceeeeehhhhccCCCceeehhhh
Confidence            34555 7899999999999999976     34499999998776666777665433

>PF12171 zf-C2H2_jaz: Zinc-finger double-stranded RNA-binding; InterPro: IPR022755 This zinc finger is found in archaea and eukaryotes, and is approximately 30 amino acids in length

Probab=96.65  E-value=0.00052  Score=30.78  Aligned_cols=21  Identities=33%  Similarity=0.706  Sum_probs=14.6

Q ss_pred             eeCCCCccccccchHHHhHHH
Q psy16578         79 FKCPHCNKKCHQKCNLKSHIA   99 (177)
Q Consensus        79 ~~C~~C~~~f~~~~~l~~H~~   99 (177)
                      |.|..|++.|.+...|..|++
T Consensus         2 ~~C~~C~k~f~~~~~~~~H~~   22 (27)
T PF12171_consen    2 FYCDACDKYFSSENQLKQHMK   22 (27)
T ss_dssp             CBBTTTTBBBSSHHHHHCCTT
T ss_pred             CCcccCCCCcCCHHHHHHHHc
Confidence            567777777777777777663

The mammalian members of this group occur multiple times along the protein, joined by flexible linkers, and are referred to as JAZ - dsRNA-binding ZF protein - zinc-fingers. The JAZ proteins are expressed in all tissues tested and localise in the nucleus, particularly the nucleolus []. JAZ preferentially binds to double-stranded (ds) RNA or RNA/DNA hybrids rather than DNA. In addition to binding double-stranded RNA, these zinc-fingers are required for nucleolar localisation. This entry represents the multiple-adjacent-C2H2 zinc finger, JAZ. ; PDB: 4DGW_A 1ZR9_A.

>PF13913 zf-C2HC_2: zinc-finger of a C2HC-type

Probab=96.55  E-value=0.0022  Score=28.12  Aligned_cols=21  Identities=24%  Similarity=0.615  Sum_probs=13.8

Q ss_pred             ccCCCCcccccchhHHHHHHhh
Q psy16578        153 FKCPYCDKRCKLKGNLMSHIAL  174 (177)
Q Consensus       153 ~~C~~C~~~f~~~~~l~~H~~~  174 (177)
                      ..|+.|++.| ..+.|.+|+.+
T Consensus         3 ~~C~~CgR~F-~~~~l~~H~~~   23 (25)
T PF13913_consen    3 VPCPICGRKF-NPDRLEKHEKI   23 (25)
T ss_pred             CcCCCCCCEE-CHHHHHHHHHh
Confidence            4677777777 45567777653

>KOG1146|consensus

Probab=96.51  E-value=0.00095  Score=56.10  Aligned_cols=54  Identities=24%  Similarity=0.509  Sum_probs=46.9

Q ss_pred             CCceecCCccccccChhHHHHHHHHhhCC------------------------CCCccCCCCcccccchhHHHHHHhh
Q psy16578        121 NGSFICPKCSNRYVYKHNLKQHLKFECGV------------------------EPQFKCPYCDKRCKLKGNLMSHIAL  174 (177)
Q Consensus       121 ~~~~~C~~C~~~f~~~~~l~~H~~~h~~~------------------------~~~~~C~~C~~~f~~~~~l~~H~~~  174 (177)
                      .+.|+|+.|+..|+....|-.||+..|.+                        .++|.|..|.+.++...+|.+|+..
T Consensus       463 ~kt~~cpkc~~~yk~a~~L~vhmRskhp~~~~~~c~~gq~~~~~arg~~~~~~~~p~~C~~C~~stttng~LsihlqS  540 (1406)
T KOG1146|consen  463 FKTLKCPKCNWHYKLAQTLGVHMRSKHPESQSAYCKAGQNHPRLARGEVYRCPGKPYPCRACNYSTTTNGNLSIHLQS  540 (1406)
T ss_pred             cccccCCccchhhhhHHHhhhcccccccccchhHhHhccccccccccccccCCCCcccceeeeeeeecchHHHHHHHH
Confidence            47899999999999999999999983322                        3369999999999999999999963

>PRK04860 hypothetical protein; Provisional

Probab=96.50  E-value=0.0022  Score=42.03  Aligned_cols=39  Identities=26%  Similarity=0.569  Sum_probs=32.9

Q ss_pred             CccccCccchhccChHHHHHHHHHHhCCCCceeCCCCccccccc
Q psy16578         48 DVFACPKCSKTYLRQYTLNAHLRYECGKRPKFKCPHCNKKCHQK   91 (177)
Q Consensus        48 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C~~~f~~~   91 (177)
                      -+|.|. |+.   ...+++.|.++|.+..+ |.|..|+..|...
T Consensus       118 ~~Y~C~-C~~---~~~~~rrH~ri~~g~~~-YrC~~C~~~l~~~  156 (160)
T PRK04860        118 FPYRCK-CQE---HQLTVRRHNRVVRGEAV-YRCRRCGETLVFK  156 (160)
T ss_pred             EEEEcC-CCC---eeCHHHHHHHHhcCCcc-EECCCCCceeEEe
Confidence            458998 987   56789999999999876 9999999887654

>PF12013 DUF3505: Protein of unknown function (DUF3505); InterPro: IPR022698 This family of proteins is functionally uncharacterised

Probab=96.37  E-value=0.017  Score=35.46  Aligned_cols=25  Identities=24%  Similarity=0.578  Sum_probs=17.2

Q ss_pred             ccC----CCCcccccchhHHHHHHhhhcC
Q psy16578        153 FKC----PYCDKRCKLKGNLMSHIALKHT  177 (177)
Q Consensus       153 ~~C----~~C~~~f~~~~~l~~H~~~~h~  177 (177)
                      |.|    ..|++.+.+...|.+|++.+||
T Consensus        81 ~~C~~~~~~C~y~~~~~~~m~~H~~~~Hg  109 (109)
T PF12013_consen   81 YRCQCDPPHCGYITRSKKTMRKHWRKEHG  109 (109)
T ss_pred             eeeecCCCCCCcEeccHHHHHHHHHHhcC
Confidence            666    6677777777777777776665

This protein is found in eukaryotes. Proteins in this family are typically between 247 to 1018 amino acids in length. This region contains two segments that are likely to be C2H2 zinc binding domains.

>PF12013 DUF3505: Protein of unknown function (DUF3505); InterPro: IPR022698 This family of proteins is functionally uncharacterised

Probab=96.28  E-value=0.011  Score=36.30  Aligned_cols=27  Identities=26%  Similarity=0.619  Sum_probs=22.3

Q ss_pred             Cceec----CCccccccChhHHHHHHHHhhC
Q psy16578        122 GSFIC----PKCSNRYVYKHNLKQHLKFECG  148 (177)
Q Consensus       122 ~~~~C----~~C~~~f~~~~~l~~H~~~h~~  148 (177)
                      .+|.|    ..|+..+.+...+.+|++.+||
T Consensus        79 ~G~~C~~~~~~C~y~~~~~~~m~~H~~~~Hg  109 (109)
T PF12013_consen   79 DGYRCQCDPPHCGYITRSKKTMRKHWRKEHG  109 (109)
T ss_pred             CCeeeecCCCCCCcEeccHHHHHHHHHHhcC
Confidence            35888    8898888888899999888765

This protein is found in eukaryotes. Proteins in this family are typically between 247 to 1018 amino acids in length. This region contains two segments that are likely to be C2H2 zinc binding domains.

>KOG2482|consensus

Probab=96.28  E-value=0.014  Score=42.48  Aligned_cols=127  Identities=23%  Similarity=0.373  Sum_probs=84.1

Q ss_pred             CccccCccchhccC-hHHHHHHHHHHhCCC---C------------------ceeCCCCccccccchHHHhHHHHhcC-C
Q psy16578         48 DVFACPKCSKTYLR-QYTLNAHLRYECGKR---P------------------KFKCPHCNKKCHQKCNLKSHIALKHD-Q  104 (177)
Q Consensus        48 ~~~~C~~C~~~f~~-~~~l~~H~~~h~~~~---~------------------~~~C~~C~~~f~~~~~l~~H~~~~~~-~  104 (177)
                      ...+|-.|...+.. ++.+..|+-..|+-.   +                  .+.|-.|.+.|..+..|..||+...- .
T Consensus       143 fslqClFCn~e~lgnRs~~l~Hlf~~H~lniGlpDniVyvnelLehLkekL~r~~CLyCekifrdkntLkeHMrkK~Hrr  222 (423)
T KOG2482|consen  143 FSLQCLFCNNEGLGNRSEILEHLFHVHGLNIGLPDNIVYVNELLEHLKEKLERLRCLYCEKIFRDKNTLKEHMRKKRHRR  222 (423)
T ss_pred             eeeEEEEecchhcccHHHHHHHHHHHhhhccCCCcceeeHHHHHHHHHHHHhhheeeeeccccCCcHHHHHHHHhccCcc
Confidence            34579999765544 566777765443211   0                  37899999999999999999976432 1


Q ss_pred             CCCC-------------CCcccccc-----------------------ccCCCCc--eecCCccccccChhHHHHHHHHh
Q psy16578        105 LLAP-------------LAPRSYRR-----------------------NSQLNGS--FICPKCSNRYVYKHNLKQHLKFE  146 (177)
Q Consensus       105 ~~~~-------------~~~~~~~~-----------------------~~~~~~~--~~C~~C~~~f~~~~~l~~H~~~h  146 (177)
                      +.+.             ..++++..                       ...+..+  ..|.+|.....+...|..||.+-
T Consensus       223 inPknreYDkfyiINY~ev~ks~t~~~~e~dret~~d~~E~D~~wsDw~ed~a~a~~v~CLfC~~~~en~~~l~eHmk~v  302 (423)
T KOG2482|consen  223 INPKNREYDKFYIINYLEVGKSWTIVHSEDDRETNEDINETDDTWSDWNEDDAEALSVVCLFCTNFYENPVFLFEHMKIV  302 (423)
T ss_pred             cCCCccccceEEEEeHhhcCCccchhhhhhhhhhhccccccccchhhhhcCCCCccceEEEeeccchhhHHHHHHHHHHH
Confidence            1110             00000000                       0001112  58999999999999999999975


Q ss_pred             hCC--------------------------CCCccCCCCcccccchhHHHHHHhh
Q psy16578        147 CGV--------------------------EPQFKCPYCDKRCKLKGNLMSHIAL  174 (177)
Q Consensus       147 ~~~--------------------------~~~~~C~~C~~~f~~~~~l~~H~~~  174 (177)
                      |.-                          ...-.|..|.-.|.....|..||..
T Consensus       303 He~Dl~Ki~sd~~Ln~YqrvrviNyiRkq~~~~~c~~cd~~F~~e~~l~~hm~e  356 (423)
T KOG2482|consen  303 HEFDLLKIQSDYSLNFYQRVRVINYIRKQKKKSRCAECDLSFWKEPGLLIHMVE  356 (423)
T ss_pred             HHhhHHhhccccccchhhhhhHHHHHHHHhhccccccccccccCcchhhhhccc
Confidence            542                          2247789999999999999999963

>KOG4173|consensus

Probab=96.23  E-value=0.0014  Score=43.95  Aligned_cols=49  Identities=24%  Similarity=0.448  Sum_probs=23.1

Q ss_pred             cccCc--cchhccChHHHHHHHHHHhCCCCceeCCCCccccccchHHHhHHHHhc
Q psy16578         50 FACPK--CSKTYLRQYTLNAHLRYECGKRPKFKCPHCNKKCHQKCNLKSHIALKH  102 (177)
Q Consensus        50 ~~C~~--C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~  102 (177)
                      +.|++  |-..|.....+..|..+-|+    -.|..|.+.|.+...|..|+.+-|
T Consensus        80 ~~cqvagc~~~~d~lD~~E~hY~~~h~----~sCs~C~r~~Pt~hLLd~HI~E~H  130 (253)
T KOG4173|consen   80 FACQVAGCCQVFDALDDYEHHYHTLHG----NSCSFCKRAFPTGHLLDAHILEWH  130 (253)
T ss_pred             ccccccchHHHHhhhhhHHHhhhhccc----chhHHHHHhCCchhhhhHHHHHHH
Confidence            44444  44445444444444332221    455555555555555555554444

>smart00451 ZnF_U1 U1-like zinc finger

Probab=96.10  E-value=0.0037  Score=29.73  Aligned_cols=21  Identities=19%  Similarity=0.474  Sum_probs=16.4

Q ss_pred             ccCCCCcccccchhHHHHHHh
Q psy16578        153 FKCPYCDKRCKLKGNLMSHIA  173 (177)
Q Consensus       153 ~~C~~C~~~f~~~~~l~~H~~  173 (177)
                      |.|.+|+..|.+..++..|+.
T Consensus         4 ~~C~~C~~~~~~~~~~~~H~~   24 (35)
T smart00451        4 FYCKLCNVTFTDEISVEAHLK   24 (35)
T ss_pred             eEccccCCccCCHHHHHHHHC
Confidence            778888888887777777775

Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins.

>KOG2482|consensus

Probab=96.05  E-value=0.023  Score=41.38  Aligned_cols=113  Identities=17%  Similarity=0.317  Sum_probs=71.6

Q ss_pred             HHHHHHHHHhCCCCceeCCCCcccc-ccchHHHhHHHHhcCCCCCCCCcccccc-----ccCCCCceecCCccccccChh
Q psy16578         64 TLNAHLRYECGKRPKFKCPHCNKKC-HQKCNLKSHIALKHDQLLAPLAPRSYRR-----NSQLNGSFICPKCSNRYVYKH  137 (177)
Q Consensus        64 ~l~~H~~~h~~~~~~~~C~~C~~~f-~~~~~l~~H~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~C~~C~~~f~~~~  137 (177)
                      .|.+|++.-.+......|-.|...+ ...+.+..|+-..|+....-...-++-.     -...-..+.|.+|.+.|.++-
T Consensus       130 aLeqqQ~Eredt~fslqClFCn~e~lgnRs~~l~Hlf~~H~lniGlpDniVyvnelLehLkekL~r~~CLyCekifrdkn  209 (423)
T KOG2482|consen  130 ALEQQQKEREDTIFSLQCLFCNNEGLGNRSEILEHLFHVHGLNIGLPDNIVYVNELLEHLKEKLERLRCLYCEKIFRDKN  209 (423)
T ss_pred             HHHHHHHHhcCCeeeeEEEEecchhcccHHHHHHHHHHHhhhccCCCcceeeHHHHHHHHHHHHhhheeeeeccccCCcH
Confidence            3455555444443346799997654 5567788998888875322111111100     000112578999999999999


Q ss_pred             HHHHHHHH--hhCCCC-----------------------------------------------------CccCCCCcccc
Q psy16578        138 NLKQHLKF--ECGVEP-----------------------------------------------------QFKCPYCDKRC  162 (177)
Q Consensus       138 ~l~~H~~~--h~~~~~-----------------------------------------------------~~~C~~C~~~f  162 (177)
                      .|+.||+.  |....+                                                     ..+|-.|....
T Consensus       210 tLkeHMrkK~HrrinPknreYDkfyiINY~ev~ks~t~~~~e~dret~~d~~E~D~~wsDw~ed~a~a~~v~CLfC~~~~  289 (423)
T KOG2482|consen  210 TLKEHMRKKRHRRINPKNREYDKFYIINYLEVGKSWTIVHSEDDRETNEDINETDDTWSDWNEDDAEALSVVCLFCTNFY  289 (423)
T ss_pred             HHHHHHHhccCcccCCCccccceEEEEeHhhcCCccchhhhhhhhhhhccccccccchhhhhcCCCCccceEEEeeccch
Confidence            99999995  322111                                                     14788888888


Q ss_pred             cchhHHHHHHhhhc
Q psy16578        163 KLKGNLMSHIALKH  176 (177)
Q Consensus       163 ~~~~~l~~H~~~~h  176 (177)
                      -+...|..||...|
T Consensus       290 en~~~l~eHmk~vH  303 (423)
T KOG2482|consen  290 ENPVFLFEHMKIVH  303 (423)
T ss_pred             hhHHHHHHHHHHHH
Confidence            87888888888776

>KOG2893|consensus

Probab=95.81  E-value=0.003  Score=43.43  Aligned_cols=49  Identities=27%  Similarity=0.407  Sum_probs=40.2

Q ss_pred             cccCccchhccChHHHHHHHHHHhCCCCceeCCCCccccccchHHHhHHHHhcC
Q psy16578         50 FACPKCSKTYLRQYTLNAHLRYECGKRPKFKCPHCNKKCHQKCNLKSHIALKHD  103 (177)
Q Consensus        50 ~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~  103 (177)
                      -.|..|++.|....-|.+|++..|     |+|.+|.+...+--.|..|-...|.
T Consensus        11 pwcwycnrefddekiliqhqkakh-----fkchichkkl~sgpglsihcmqvhk   59 (341)
T KOG2893|consen   11 PWCWYCNREFDDEKILIQHQKAKH-----FKCHICHKKLFSGPGLSIHCMQVHK   59 (341)
T ss_pred             ceeeecccccchhhhhhhhhhhcc-----ceeeeehhhhccCCCceeehhhhhh
Confidence            369999999999999999998776     9999999987777677777555554

>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=95.64  E-value=0.01  Score=43.19  Aligned_cols=47  Identities=17%  Similarity=0.283  Sum_probs=26.9

Q ss_pred             ccCccchhccChHHHHHHHHHHhCCCCceeCCCCc----cccccchHHHhHHH
Q psy16578         51 ACPKCSKTYLRQYTLNAHLRYECGKRPKFKCPHCN----KKCHQKCNLKSHIA   99 (177)
Q Consensus        51 ~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C~----~~f~~~~~l~~H~~   99 (177)
                      .|..|..-|.....|..|++..|..  .|+|..=+    .-|++..+|..|.+
T Consensus       222 ~C~FC~~~FYdDDEL~~HcR~~HE~--ChICD~v~p~~~QYFK~Y~~Le~HF~  272 (493)
T COG5236         222 LCIFCKIYFYDDDELRRHCRLRHEA--CHICDMVGPIRYQYFKSYEDLEAHFR  272 (493)
T ss_pred             hhhhccceecChHHHHHHHHhhhhh--hhhhhccCccchhhhhCHHHHHHHhh
Confidence            4777777777777777777665532  13333222    23666666766663

>smart00451 ZnF_U1 U1-like zinc finger

Probab=95.57  E-value=0.012  Score=27.85  Aligned_cols=25  Identities=28%  Similarity=0.618  Sum_probs=21.8

Q ss_pred             CceecCCccccccChhHHHHHHHHh
Q psy16578        122 GSFICPKCSNRYVYKHNLKQHLKFE  146 (177)
Q Consensus       122 ~~~~C~~C~~~f~~~~~l~~H~~~h  146 (177)
                      .+|.|..|++.|.+...+..|+...
T Consensus         2 ~~~~C~~C~~~~~~~~~~~~H~~gk   26 (35)
T smart00451        2 GGFYCKLCNVTFTDEISVEAHLKGK   26 (35)
T ss_pred             cCeEccccCCccCCHHHHHHHHChH
Confidence            4689999999999999999998753

Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins.

>KOG2785|consensus

Probab=95.38  E-value=0.013  Score=43.18  Aligned_cols=129  Identities=17%  Similarity=0.189  Sum_probs=75.2

Q ss_pred             ccccCccchhccChHHHHHHHHH--HhCC----------------------------------CCceeCCCCccccccch
Q psy16578         49 VFACPKCSKTYLRQYTLNAHLRY--ECGK----------------------------------RPKFKCPHCNKKCHQKC   92 (177)
Q Consensus        49 ~~~C~~C~~~f~~~~~l~~H~~~--h~~~----------------------------------~~~~~C~~C~~~f~~~~   92 (177)
                      .|.|.-|...|......+.|+++  |.-.                                  ..++.|..|.+.|.+..
T Consensus         3 ~ftC~tC~v~F~~ad~Qr~HyKSdWHRYNLKRkVA~lPPItaE~F~~k~~s~~~~~~~~~e~~~~~~~c~~c~k~~~s~~   82 (390)
T KOG2785|consen    3 GFTCNTCNVEFDDADEQRAHYKSDWHRYNLKRKVASLPPITAEEFNEKVLSDDSEKEENLEEAESVVYCEACNKSFASPK   82 (390)
T ss_pred             cceeeceeeeeccHHHHHHHhhhhHHHhhHHhHhhcCCCcCHHHHhHHHhhhhhhhhhhhhhcccceehHHhhccccChh
Confidence            38999999999998888888875  3200                                  11588999999999999


Q ss_pred             HHHhHHHHhcCCCCCCCCc-------cccc-----c-ccCCCCceecCCccccccChhHHHHHHH------Hh-----hC
Q psy16578         93 NLKSHIALKHDQLLAPLAP-------RSYR-----R-NSQLNGSFICPKCSNRYVYKHNLKQHLK------FE-----CG  148 (177)
Q Consensus        93 ~l~~H~~~~~~~~~~~~~~-------~~~~-----~-~~~~~~~~~C~~C~~~f~~~~~l~~H~~------~h-----~~  148 (177)
                      ....|+...-.........       ....     . .....++-.+..+............+..      +-     ..
T Consensus        83 a~~~hl~Sk~h~~~~~~~~r~~e~d~a~~~q~~~~~p~~l~~~~e~e~~~~E~~~~~d~~~e~~~dd~~Edi~~d~~~e~  162 (390)
T KOG2785|consen   83 AHENHLKSKKHVENLSNHQRSEEGDSAKISQLPSRRPSNLQNKGESELKWYEVDSDEDSSEEEEEDDEEEDIEEDGDDED  162 (390)
T ss_pred             hHHHHHHHhhcchhhhhhhccccccchhhhhccccCccccccCCCcccchhhcccccccchhhccCcchhhhhhccchhc
Confidence            9999987654321110000       0000     0 0011111012222222222111111111      11     11


Q ss_pred             CCCCccCCCCcccccchhHHHHHHhhhcC
Q psy16578        149 VEPQFKCPYCDKRCKLKGNLMSHIALKHT  177 (177)
Q Consensus       149 ~~~~~~C~~C~~~f~~~~~l~~H~~~~h~  177 (177)
                      +..|-.|..|++.+.+-.....||..+||
T Consensus       163 e~~Pt~CLfC~~~~k~~e~~~~HM~~~Hg  191 (390)
T KOG2785|consen  163 ELIPTDCLFCDKKSKSLEENLKHMFKEHG  191 (390)
T ss_pred             ccCCcceeecCCCcccHHHHHHHHhhccC
Confidence            23358899999999999999999999997

>COG4049 Uncharacterized protein containing archaeal-type C2H2 Zn-finger [General function prediction only]

Probab=94.68  E-value=0.026  Score=29.54  Aligned_cols=31  Identities=26%  Similarity=0.650  Sum_probs=24.4

Q ss_pred             CCCCCccccCccchhccChHHHHHHHHHHhC
Q psy16578         44 PAGEDVFACPKCSKTYLRQYTLNAHLRYECG   74 (177)
Q Consensus        44 ~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~   74 (177)
                      -+++..+.|+-|+..|....++.+|+...|+
T Consensus        12 RDGE~~lrCPRC~~~FR~~K~Y~RHVNKaH~   42 (65)
T COG4049          12 RDGEEFLRCPRCGMVFRRRKDYIRHVNKAHG   42 (65)
T ss_pred             cCCceeeeCCchhHHHHHhHHHHHHhhHHhh
Confidence            4566678899999999888888888877654

>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center

Probab=94.58  E-value=0.018  Score=27.08  Aligned_cols=24  Identities=29%  Similarity=0.886  Sum_probs=18.2

Q ss_pred             cccCccchhccChHHHHHHHHHHhCCCCceeCCCCcc
Q psy16578         50 FACPKCSKTYLRQYTLNAHLRYECGKRPKFKCPHCNK   86 (177)
Q Consensus        50 ~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C~~   86 (177)
                      |.|.+||..+....             .++.|++||.
T Consensus         2 ~~C~~CGy~y~~~~-------------~~~~CP~Cg~   25 (33)
T cd00350           2 YVCPVCGYIYDGEE-------------APWVCPVCGA   25 (33)
T ss_pred             EECCCCCCEECCCc-------------CCCcCcCCCC
Confidence            68999998766543             4589999985

The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.

>KOG4173|consensus

Probab=94.42  E-value=0.0093  Score=40.14  Aligned_cols=78  Identities=22%  Similarity=0.439  Sum_probs=64.1

Q ss_pred             ceeCCC--CccccccchHHHhHHHHhcCCCCCCCCccccccccCCCCceecCCccccccChhHHHHHHHH----------
Q psy16578         78 KFKCPH--CNKKCHQKCNLKSHIALKHDQLLAPLAPRSYRRNSQLNGSFICPKCSNRYVYKHNLKQHLKF----------  145 (177)
Q Consensus        78 ~~~C~~--C~~~f~~~~~l~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~----------  145 (177)
                      .|.|++  |-..|.+......|....|+                    ..|.+|.+.|.+...|-.|+..          
T Consensus        79 ~~~cqvagc~~~~d~lD~~E~hY~~~h~--------------------~sCs~C~r~~Pt~hLLd~HI~E~HDs~Fqa~v  138 (253)
T KOG4173|consen   79 AFACQVAGCCQVFDALDDYEHHYHTLHG--------------------NSCSFCKRAFPTGHLLDAHILEWHDSLFQALV  138 (253)
T ss_pred             cccccccchHHHHhhhhhHHHhhhhccc--------------------chhHHHHHhCCchhhhhHHHHHHHHHHHHHHH
Confidence            478887  67789888889999887776                    4899999999999888888763          


Q ss_pred             hhCCCCCccCCC--CcccccchhHHHHHHhhhc
Q psy16578        146 ECGVEPQFKCPY--CDKRCKLKGNLMSHIALKH  176 (177)
Q Consensus       146 h~~~~~~~~C~~--C~~~f~~~~~l~~H~~~~h  176 (177)
                      -.| ...|+|-+  |+-.|.+...-..|+-..|
T Consensus       139 eRG-~dMy~ClvEgCt~KFkT~r~RkdH~I~~H  170 (253)
T KOG4173|consen  139 ERG-QDMYQCLVEGCTEKFKTSRDRKDHMIRMH  170 (253)
T ss_pred             HcC-ccHHHHHHHhhhhhhhhhhhhhhHHHHhc
Confidence            234 55599966  9999999999999997766

>KOG2186|consensus

Probab=94.34  E-value=0.023  Score=39.59  Aligned_cols=53  Identities=19%  Similarity=0.478  Sum_probs=39.6

Q ss_pred             eeCCCCccccccchHHHhHHHHhcCCCCCCCCccccccccCCCCceecCCccccccChhHHHHHHHHhhCCCC
Q psy16578         79 FKCPHCNKKCHQKCNLKSHIALKHDQLLAPLAPRSYRRNSQLNGSFICPKCSNRYVYKHNLKQHLKFECGVEP  151 (177)
Q Consensus        79 ~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~  151 (177)
                      |.|..||....-. .+.+|+...++                  ..|.|..|++.|.. ..+..|...-+..++
T Consensus         4 FtCnvCgEsvKKp-~vekH~srCrn------------------~~fSCIDC~k~F~~-~sYknH~kCITEaQK   56 (276)
T KOG2186|consen    4 FTCNVCGESVKKP-QVEKHMSRCRN------------------AYFSCIDCGKTFER-VSYKNHTKCITEAQK   56 (276)
T ss_pred             Eehhhhhhhcccc-chHHHHHhccC------------------CeeEEeeccccccc-chhhhhhhhcchHHH
Confidence            7899999887765 46779877664                  46899999999987 667888775544333

>COG4049 Uncharacterized protein containing archaeal-type C2H2 Zn-finger [General function prediction only]

Probab=93.88  E-value=0.036  Score=29.02  Aligned_cols=29  Identities=17%  Similarity=0.447  Sum_probs=19.7

Q ss_pred             CCCceecCCccccccChhHHHHHHHHhhC
Q psy16578        120 LNGSFICPKCSNRYVYKHNLKQHLKFECG  148 (177)
Q Consensus       120 ~~~~~~C~~C~~~f~~~~~l~~H~~~h~~  148 (177)
                      ++.-+.|+.|+..|..+..+.+|...-|+
T Consensus        14 GE~~lrCPRC~~~FR~~K~Y~RHVNKaH~   42 (65)
T COG4049          14 GEEFLRCPRCGMVFRRRKDYIRHVNKAHG   42 (65)
T ss_pred             CceeeeCCchhHHHHHhHHHHHHhhHHhh
Confidence            44456777777777777777777765555

>PF05443 ROS_MUCR: ROS/MUCR transcriptional regulator protein; InterPro: IPR008807 This family consists of several ROS/MUCR transcriptional regulator proteins

Probab=93.87  E-value=0.029  Score=35.56  Aligned_cols=22  Identities=36%  Similarity=0.866  Sum_probs=9.3

Q ss_pred             eecCCccccccChhHHHHHHHHhhC
Q psy16578        124 FICPKCSNRYVYKHNLKQHLKFECG  148 (177)
Q Consensus       124 ~~C~~C~~~f~~~~~l~~H~~~h~~  148 (177)
                      ..|-.||+.|+.   |.+|++.|+|
T Consensus        73 i~clecGk~~k~---LkrHL~~~~g   94 (132)
T PF05443_consen   73 IICLECGKKFKT---LKRHLRTHHG   94 (132)
T ss_dssp             EE-TBT--EESB---HHHHHHHTT-
T ss_pred             eEEccCCcccch---HHHHHHHccC
Confidence            455556655543   2555555543

The ros chromosomal gene is present in octopine and nopaline strains of Agrobacterium tumefaciens as well as in Rhizobium meliloti (Sinorhizobium meliloti). This gene encodes a 15.5 kDa protein that specifically represses the virC and virD operons in the virulence region of the Ti plasmid [] and is necessary for succinoglycan production []. S. meliloti can produce two types of acidic exopolysaccharides, succinoglycan and galactoglucan, that are interchangeable for infection of Medicago sativa (Alfalfa) nodules. MucR from S. meliloti acts as a transcriptional repressor that blocks the expression of the exp genes responsible for galactoglucan production therefore allowing the exclusive production of succinoglycan [].; GO: 0003677 DNA binding, 0008270 zinc ion binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2JSP_A.

>COG5048 FOG: Zn-finger [General function prediction only]

Probab=93.51  E-value=0.013  Score=44.45  Aligned_cols=58  Identities=29%  Similarity=0.515  Sum_probs=49.9

Q ss_pred             CccccCccchhccChHHHHHHHH--HHhCCC-CceeCC--CCccccccchHHHhHHHHhcCCC
Q psy16578         48 DVFACPKCSKTYLRQYTLNAHLR--YECGKR-PKFKCP--HCNKKCHQKCNLKSHIALKHDQL  105 (177)
Q Consensus        48 ~~~~C~~C~~~f~~~~~l~~H~~--~h~~~~-~~~~C~--~C~~~f~~~~~l~~H~~~~~~~~  105 (177)
                      .++.|..|...|.....|..|.+  .|.+.. .++.|+  .|++.|.....+..|...+.+..
T Consensus       288 ~~~~~~~~~~~~s~~~~l~~~~~~~~h~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~  350 (467)
T COG5048         288 LPIKSKQCNISFSRSSPLTRHLRSVNHSGESLKPFSCPYSLCGKLFSRNDALKRHILLHTSIS  350 (467)
T ss_pred             cCCCCccccCCccccccccccccccccccccCCceeeeccCCCccccccccccCCcccccCCC
Confidence            35789999999999999999999  676662 559999  79999999999999998877654

>KOG2186|consensus

Probab=93.20  E-value=0.055  Score=37.76  Aligned_cols=49  Identities=20%  Similarity=0.476  Sum_probs=38.6

Q ss_pred             cccCccchhccChHHHHHHHHHHhCCCCceeCCCCccccccchHHHhHHHHhc
Q psy16578         50 FACPKCSKTYLRQYTLNAHLRYECGKRPKFKCPHCNKKCHQKCNLKSHIALKH  102 (177)
Q Consensus        50 ~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~  102 (177)
                      |.|.+||...... .+.+|+-.-++ .. |.|-.|+..|.. .+...|..-..
T Consensus         4 FtCnvCgEsvKKp-~vekH~srCrn-~~-fSCIDC~k~F~~-~sYknH~kCIT   52 (276)
T KOG2186|consen    4 FTCNVCGESVKKP-QVEKHMSRCRN-AY-FSCIDCGKTFER-VSYKNHTKCIT   52 (276)
T ss_pred             Eehhhhhhhcccc-chHHHHHhccC-Ce-eEEeeccccccc-chhhhhhhhcc
Confidence            7899999987754 77789877665 35 999999999998 67888875443

>PF06524 NOA36: NOA36 protein; InterPro: IPR010531 This family consists of several NOA36 proteins which contain 29 highly conserved cysteine residues

Probab=93.17  E-value=0.036  Score=38.84  Aligned_cols=20  Identities=20%  Similarity=0.453  Sum_probs=11.9

Q ss_pred             CCccCCCCcccccchhHHHH
Q psy16578        151 PQFKCPYCDKRCKLKGNLMS  170 (177)
Q Consensus       151 ~~~~C~~C~~~f~~~~~l~~  170 (177)
                      +++.|+.|++...-...|..
T Consensus       208 k~~PCPKCg~et~eTkdLSm  227 (314)
T PF06524_consen  208 KPIPCPKCGYETQETKDLSM  227 (314)
T ss_pred             CCCCCCCCCCccccccccee
Confidence            45777777766555444443

The function of this protein is unknown.; GO: 0008270 zinc ion binding, 0005634 nucleus

>PF09538 FYDLN_acid: Protein of unknown function (FYDLN_acid); InterPro: IPR012644 Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues

Probab=92.81  E-value=0.082  Score=32.32  Aligned_cols=15  Identities=27%  Similarity=0.913  Sum_probs=10.7

Q ss_pred             CceecCCccccccCh
Q psy16578        122 GSFICPKCSNRYVYK  136 (177)
Q Consensus       122 ~~~~C~~C~~~f~~~  136 (177)
                      .|..|++||..|...
T Consensus        25 ~PivCP~CG~~~~~~   39 (108)
T PF09538_consen   25 DPIVCPKCGTEFPPE   39 (108)
T ss_pred             CCccCCCCCCccCcc
Confidence            567788888777655

The function of members of this family is unknown.

>PF02892 zf-BED: BED zinc finger; InterPro: IPR003656 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=92.81  E-value=0.071  Score=26.84  Aligned_cols=13  Identities=23%  Similarity=0.529  Sum_probs=4.4

Q ss_pred             ceecCCccccccC
Q psy16578        123 SFICPKCSNRYVY  135 (177)
Q Consensus       123 ~~~C~~C~~~f~~  135 (177)
                      ...|..|++.+..
T Consensus        16 ~a~C~~C~~~~~~   28 (45)
T PF02892_consen   16 KAKCKYCGKVIKY   28 (45)
T ss_dssp             -EEETTTTEE---
T ss_pred             eEEeCCCCeEEee
Confidence            3445555444433

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents predicted BED-type zinc finger domains. The BED finger which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain []. Some proteins known to contain a BED domain include animal, plant and fungi AC1 and Hobo-like transposases; Caenorhabditis elegans Dpy-20 protein, a predicted cuticular gene transcriptional regulator; Drosophila BEAF (boundary element-associated factor), thought to be involved in chromatin insulation; Drosophila DREF, a transcriptional regulator for S-phase genes; and tobacco 3AF1 and tomato E4/E8-BP1, light- and ethylene-regulated DNA binding proteins that contain two BED fingers. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003677 DNA binding; PDB: 2DJR_A 2CT5_A.

>KOG2231|consensus

Probab=92.79  E-value=0.15  Score=40.95  Aligned_cols=47  Identities=28%  Similarity=0.563  Sum_probs=31.2

Q ss_pred             ccCccchhccChHHHHHHHHHHhCCCCceeCCCC------ccccccchHHHhHHHHhc
Q psy16578         51 ACPKCSKTYLRQYTLNAHLRYECGKRPKFKCPHC------NKKCHQKCNLKSHIALKH  102 (177)
Q Consensus        51 ~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C------~~~f~~~~~l~~H~~~~~  102 (177)
                      .|..|...|.....|..|++.+|     |-|..|      +..|.....|..|.+..|
T Consensus       184 ~C~~C~~~fld~~el~rH~~~~h-----~~chfC~~~~~~neyy~~~~dLe~HfR~~H  236 (669)
T KOG2231|consen  184 LCKFCHERFLDDDELYRHLRFDH-----EFCHFCDYKTGQNEYYNDYDDLEEHFRKGH  236 (669)
T ss_pred             cchhhhhhhccHHHHHHhhccce-----eheeecCcccccchhcccchHHHHHhhhcC
Confidence            57777777777777777777665     556655      234666667777776655

>COG5048 FOG: Zn-finger [General function prediction only]

Probab=92.17  E-value=0.024  Score=43.04  Aligned_cols=55  Identities=25%  Similarity=0.476  Sum_probs=48.7

Q ss_pred             CceecCCccccccChhHHHHHHH--HhhCCC-CCccCC--CCcccccchhHHHHHHhhhc
Q psy16578        122 GSFICPKCSNRYVYKHNLKQHLK--FECGVE-PQFKCP--YCDKRCKLKGNLMSHIALKH  176 (177)
Q Consensus       122 ~~~~C~~C~~~f~~~~~l~~H~~--~h~~~~-~~~~C~--~C~~~f~~~~~l~~H~~~~h  176 (177)
                      .++.|..|...|.....|..|.+  .|.++. .++.|+  .|++.|.....+.+|...|.
T Consensus       288 ~~~~~~~~~~~~s~~~~l~~~~~~~~h~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~  347 (467)
T COG5048         288 LPIKSKQCNISFSRSSPLTRHLRSVNHSGESLKPFSCPYSLCGKLFSRNDALKRHILLHT  347 (467)
T ss_pred             cCCCCccccCCccccccccccccccccccccCCceeeeccCCCccccccccccCCccccc
Confidence            36889999999999999999999  687742 679999  79999999999999998775

>COG2888 Predicted Zn-ribbon RNA-binding protein with a function in translation [Translation, ribosomal structure and biogenesis]

Probab=91.49  E-value=0.23  Score=26.49  Aligned_cols=30  Identities=23%  Similarity=0.520  Sum_probs=17.3

Q ss_pred             cccCccchhccChHHHHHHHHHHhCCCCceeCCCCcccccc
Q psy16578         50 FACPKCSKTYLRQYTLNAHLRYECGKRPKFKCPHCNKKCHQ   90 (177)
Q Consensus        50 ~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C~~~f~~   90 (177)
                      -.|.-||........          ... |.|+.||+.--.
T Consensus        10 ~~CtSCg~~i~p~e~----------~v~-F~CPnCGe~~I~   39 (61)
T COG2888          10 PVCTSCGREIAPGET----------AVK-FPCPNCGEVEIY   39 (61)
T ss_pred             ceeccCCCEeccCCc----------eeE-eeCCCCCceeee
Confidence            357778765422211          113 999999965433

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=91.47  E-value=0.03  Score=38.76  Aligned_cols=44  Identities=20%  Similarity=0.538  Sum_probs=28.2

Q ss_pred             CccccCccchhccChHHHHHHHHHH---------hCCCC-----ceeCCCCccccccc
Q psy16578         48 DVFACPKCSKTYLRQYTLNAHLRYE---------CGKRP-----KFKCPHCNKKCHQK   91 (177)
Q Consensus        48 ~~~~C~~C~~~f~~~~~l~~H~~~h---------~~~~~-----~~~C~~C~~~f~~~   91 (177)
                      +...|++|+..|....-.....+.-         .....     ...|+.||.+|...
T Consensus         4 k~~~CPvC~~~F~~~~vrs~~~r~~~~d~D~~~~Y~~vnP~~Y~V~vCP~CgyA~~~~   61 (214)
T PF09986_consen    4 KKITCPVCGKEFKTKKVRSGKIRVIRRDSDFCPRYKGVNPLFYEVWVCPHCGYAAFEE   61 (214)
T ss_pred             CceECCCCCCeeeeeEEEcCCceEeeecCCCccccCCCCCeeeeEEECCCCCCccccc
Confidence            4578999999999875444443321         11112     24799999987654

>cd00729 rubredoxin_SM Rubredoxin, Small Modular nonheme iron binding domain containing a [Fe(SCys)4] center, present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase

Probab=91.25  E-value=0.11  Score=24.54  Aligned_cols=25  Identities=32%  Similarity=0.721  Sum_probs=17.7

Q ss_pred             ccccCccchhccChHHHHHHHHHHhCCCCceeCCCCcc
Q psy16578         49 VFACPKCSKTYLRQYTLNAHLRYECGKRPKFKCPHCNK   86 (177)
Q Consensus        49 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C~~   86 (177)
                      .|.|.+||..+....             +|..|+.||.
T Consensus         2 ~~~C~~CG~i~~g~~-------------~p~~CP~Cg~   26 (34)
T cd00729           2 VWVCPVCGYIHEGEE-------------APEKCPICGA   26 (34)
T ss_pred             eEECCCCCCEeECCc-------------CCCcCcCCCC
Confidence            378899987765431             4578999985

In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.

>COG4957 Predicted transcriptional regulator [Transcription]

Probab=90.63  E-value=0.13  Score=32.27  Aligned_cols=21  Identities=29%  Similarity=0.586  Sum_probs=11.4

Q ss_pred             eecCCccccccChhHHHHHHHHhh
Q psy16578        124 FICPKCSNRYVYKHNLKQHLKFEC  147 (177)
Q Consensus       124 ~~C~~C~~~f~~~~~l~~H~~~h~  147 (177)
                      ..|..+|+.|+   .|.+|+.+|.
T Consensus        77 IicLEDGkkfK---SLKRHL~t~~   97 (148)
T COG4957          77 IICLEDGKKFK---SLKRHLTTHY   97 (148)
T ss_pred             EEEeccCcchH---HHHHHHhccc
Confidence            34666666653   3555555553

>smart00614 ZnF_BED BED zinc finger

Probab=90.08  E-value=0.23  Score=25.68  Aligned_cols=12  Identities=17%  Similarity=0.473  Sum_probs=6.3

Q ss_pred             eecCCccccccC
Q psy16578        124 FICPKCSNRYVY  135 (177)
Q Consensus       124 ~~C~~C~~~f~~  135 (177)
                      -.|..|++.+..
T Consensus        19 a~C~~C~~~l~~   30 (50)
T smart00614       19 AKCKYCGKKLSR   30 (50)
T ss_pred             EEecCCCCEeee
Confidence            355556555543

DNA-binding domain in chromatin-boundary-element-binding proteins and transposases

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=90.01  E-value=0.037  Score=38.31  Aligned_cols=45  Identities=22%  Similarity=0.603  Sum_probs=28.4

Q ss_pred             CCceecCCccccccChhHHHHHHHH---hh-------CCCC----CccCCCCcccccch
Q psy16578        121 NGSFICPKCSNRYVYKHNLKQHLKF---EC-------GVEP----QFKCPYCDKRCKLK  165 (177)
Q Consensus       121 ~~~~~C~~C~~~f~~~~~l~~H~~~---h~-------~~~~----~~~C~~C~~~f~~~  165 (177)
                      ++.+.|++|+..|....-.....+.   ..       +..+    ...|+.||+.|...
T Consensus         3 ~k~~~CPvC~~~F~~~~vrs~~~r~~~~d~D~~~~Y~~vnP~~Y~V~vCP~CgyA~~~~   61 (214)
T PF09986_consen    3 DKKITCPVCGKEFKTKKVRSGKIRVIRRDSDFCPRYKGVNPLFYEVWVCPHCGYAAFEE   61 (214)
T ss_pred             CCceECCCCCCeeeeeEEEcCCceEeeecCCCccccCCCCCeeeeEEECCCCCCccccc
Confidence            4668999999999876433333321   11       1111    26899999987644

>smart00659 RPOLCX RNA polymerase subunit CX

Probab=89.69  E-value=0.25  Score=24.87  Aligned_cols=28  Identities=18%  Similarity=0.647  Sum_probs=20.1

Q ss_pred             ccccCccchhccChHHHHHHHHHHhCCCCceeCCCCcccc
Q psy16578         49 VFACPKCSKTYLRQYTLNAHLRYECGKRPKFKCPHCNKKC   88 (177)
Q Consensus        49 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C~~~f   88 (177)
                      .|.|..||..|...           .. .+..|+.||...
T Consensus         2 ~Y~C~~Cg~~~~~~-----------~~-~~irC~~CG~rI   29 (44)
T smart00659        2 IYICGECGRENEIK-----------SK-DVVRCRECGYRI   29 (44)
T ss_pred             EEECCCCCCEeecC-----------CC-CceECCCCCceE
Confidence            37899999987744           22 348999998653

present in RNA polymerase I, II and III

>PRK00398 rpoP DNA-directed RNA polymerase subunit P; Provisional

Probab=89.08  E-value=0.36  Score=24.45  Aligned_cols=12  Identities=25%  Similarity=0.980  Sum_probs=9.4

Q ss_pred             eeCCCCcccccc
Q psy16578         79 FKCPHCNKKCHQ   90 (177)
Q Consensus        79 ~~C~~C~~~f~~   90 (177)
                      |.|+.||..|..
T Consensus         4 y~C~~CG~~~~~   15 (46)
T PRK00398          4 YKCARCGREVEL   15 (46)
T ss_pred             EECCCCCCEEEE
Confidence            889999977644

>smart00734 ZnF_Rad18 Rad18-like CCHC zinc finger

Probab=88.99  E-value=0.4  Score=21.10  Aligned_cols=20  Identities=25%  Similarity=0.622  Sum_probs=15.0

Q ss_pred             ccCCCCcccccchhHHHHHHh
Q psy16578        153 FKCPYCDKRCKLKGNLMSHIA  173 (177)
Q Consensus       153 ~~C~~C~~~f~~~~~l~~H~~  173 (177)
                      ..|++|++.+ ....+..|+-
T Consensus         2 v~CPiC~~~v-~~~~in~HLD   21 (26)
T smart00734        2 VQCPVCFREV-PENLINSHLD   21 (26)
T ss_pred             CcCCCCcCcc-cHHHHHHHHH
Confidence            4688888887 5567788875

Yeast Rad18p functions with Rad5p in error-free post-replicative DNA repair. This zinc finger is likely to bind nucleic-acids.

>PF08274 PhnA_Zn_Ribbon: PhnA Zinc-Ribbon ; InterPro: IPR013987 The PhnA protein family includes the uncharacterised Escherichia coli protein PhnA and its homologues

Probab=88.22  E-value=0.18  Score=23.09  Aligned_cols=26  Identities=35%  Similarity=0.860  Sum_probs=12.7

Q ss_pred             ecCCccccccChhHHHHHHHHhhCCCCCccCCCCcccc
Q psy16578        125 ICPKCSNRYVYKHNLKQHLKFECGVEPQFKCPYCDKRC  162 (177)
Q Consensus       125 ~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C~~~f  162 (177)
                      +|+.|+..+..           ..+.. |.|+.|+..+
T Consensus         4 ~Cp~C~se~~y-----------~D~~~-~vCp~C~~ew   29 (30)
T PF08274_consen    4 KCPLCGSEYTY-----------EDGEL-LVCPECGHEW   29 (30)
T ss_dssp             --TTT-----E-----------E-SSS-EEETTTTEEE
T ss_pred             CCCCCCCccee-----------ccCCE-EeCCcccccC
Confidence            68888877665           33244 9999998754

The E. coli phnA gene is part of a large operon associated with alkylphosphonate uptake and carbon-phosphorus bond cleavage []. The protein is not related to the characterised phosphonoacetate hydrolase designated PhnA []. This entry represents the N-terminal domain of PhnA, which is predicted to form a zinc-ribbon.; PDB: 2AKL_A.

>PF13717 zinc_ribbon_4: zinc-ribbon domain

Probab=88.15  E-value=0.32  Score=23.30  Aligned_cols=34  Identities=18%  Similarity=0.504  Sum_probs=23.7

Q ss_pred             eecCCccccccChhHHHHHHHHhhCCCCCccCCCCccccc
Q psy16578        124 FICPKCSNRYVYKHNLKQHLKFECGVEPQFKCPYCDKRCK  163 (177)
Q Consensus       124 ~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C~~~f~  163 (177)
                      ..|+.|+..|.-......     .. ....+|+.|+..|.
T Consensus         3 i~Cp~C~~~y~i~d~~ip-----~~-g~~v~C~~C~~~f~   36 (36)
T PF13717_consen    3 ITCPNCQAKYEIDDEKIP-----PK-GRKVRCSKCGHVFF   36 (36)
T ss_pred             EECCCCCCEEeCCHHHCC-----CC-CcEEECCCCCCEeC
Confidence            578999998877765432     12 33489999998773

>PRK14890 putative Zn-ribbon RNA-binding protein; Provisional

Probab=87.91  E-value=0.47  Score=25.38  Aligned_cols=33  Identities=24%  Similarity=0.818  Sum_probs=20.3

Q ss_pred             CceecCCccccccCh-hHHHHHHHHhhCCCCCccCCCCccc
Q psy16578        122 GSFICPKCSNRYVYK-HNLKQHLKFECGVEPQFKCPYCDKR  161 (177)
Q Consensus       122 ~~~~C~~C~~~f~~~-~~l~~H~~~h~~~~~~~~C~~C~~~  161 (177)
                      -.|.|+.||...-.+ ..-+    ..   ..+|.|+.||+.
T Consensus        24 ~~F~CPnCG~~~I~RC~~CR----k~---~~~Y~CP~CGF~   57 (59)
T PRK14890         24 VKFLCPNCGEVIIYRCEKCR----KQ---SNPYTCPKCGFE   57 (59)
T ss_pred             CEeeCCCCCCeeEeechhHH----hc---CCceECCCCCCc
Confidence            358999999763222 1111    11   345999999963

>TIGR00373 conserved hypothetical protein TIGR00373

Probab=87.69  E-value=0.4  Score=31.58  Aligned_cols=32  Identities=31%  Similarity=0.786  Sum_probs=25.2

Q ss_pred             CCceecCCccccccChhHHHHHHHHhhCCCCCccCCCCcccc
Q psy16578        121 NGSFICPKCSNRYVYKHNLKQHLKFECGVEPQFKCPYCDKRC  162 (177)
Q Consensus       121 ~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C~~~f  162 (177)
                      ..-|.|+.|+..|..-..+.         . .|.|+.||...
T Consensus       107 ~~~Y~Cp~c~~r~tf~eA~~---------~-~F~Cp~Cg~~L  138 (158)
T TIGR00373       107 NMFFICPNMCVRFTFNEAME---------L-NFTCPRCGAML  138 (158)
T ss_pred             CCeEECCCCCcEeeHHHHHH---------c-CCcCCCCCCEe
Confidence            45699999999998777774         1 39999999653

This family of proteins is, so far, restricted to archaeal genomes. The family appears to be distantly related to the N-terminal region of the eukaryotic transcription initiation factor IIE alpha chain.

>TIGR02300 FYDLN_acid conserved hypothetical protein TIGR02300

Probab=87.56  E-value=0.45  Score=29.78  Aligned_cols=15  Identities=7%  Similarity=0.213  Sum_probs=9.5

Q ss_pred             CceecCCccccccCh
Q psy16578        122 GSFICPKCSNRYVYK  136 (177)
Q Consensus       122 ~~~~C~~C~~~f~~~  136 (177)
                      .|..|++||..|...
T Consensus        25 ~p~vcP~cg~~~~~~   39 (129)
T TIGR02300        25 RPAVSPYTGEQFPPE   39 (129)
T ss_pred             CCccCCCcCCccCcc
Confidence            456777777666544

Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.

>COG1592 Rubrerythrin [Energy production and conversion]

Probab=87.20  E-value=0.45  Score=31.45  Aligned_cols=23  Identities=35%  Similarity=0.949  Sum_probs=19.3

Q ss_pred             ceecCCccccccChhHHHHHHHHhhCCCCCccCCCCc
Q psy16578        123 SFICPKCSNRYVYKHNLKQHLKFECGVEPQFKCPYCD  159 (177)
Q Consensus       123 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C~  159 (177)
                      .|.|++||..             +-+ +.|-+|++||
T Consensus       134 ~~vC~vCGy~-------------~~g-e~P~~CPiCg  156 (166)
T COG1592         134 VWVCPVCGYT-------------HEG-EAPEVCPICG  156 (166)
T ss_pred             EEEcCCCCCc-------------ccC-CCCCcCCCCC
Confidence            6999999865             446 8889999998

>TIGR02098 MJ0042_CXXC MJ0042 family finger-like domain

Probab=87.17  E-value=0.57  Score=22.54  Aligned_cols=34  Identities=21%  Similarity=0.541  Sum_probs=22.3

Q ss_pred             eeCCCCccccccchHHHhHHHHhcCCCCCCCCccccccccCCCCceecCCcccccc
Q psy16578         79 FKCPHCNKKCHQKCNLKSHIALKHDQLLAPLAPRSYRRNSQLNGSFICPKCSNRYV  134 (177)
Q Consensus        79 ~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~C~~~f~  134 (177)
                      +.|+.|+..|.-......                      .......|+.|+..|.
T Consensus         3 ~~CP~C~~~~~v~~~~~~----------------------~~~~~v~C~~C~~~~~   36 (38)
T TIGR02098         3 IQCPNCKTSFRVVDSQLG----------------------ANGGKVRCGKCGHVWY   36 (38)
T ss_pred             EECCCCCCEEEeCHHHcC----------------------CCCCEEECCCCCCEEE
Confidence            679999988766643321                      0223578999998774

This domain contains a CXXCX(19)CXXC motif suggestive of both zinc fingers and thioredoxin, usually found at the N-terminus of prokaryotic proteins. One partially characterized gene, agmX, is among a large set in Myxococcus whose interruption affects adventurous gliding motility.

>PRK09678 DNA-binding transcriptional regulator; Provisional

Probab=87.04  E-value=0.18  Score=28.33  Aligned_cols=40  Identities=18%  Similarity=0.288  Sum_probs=24.1

Q ss_pred             eecCCccccccChhHHHHHHHHhhCCCCCccCC--CCcccccchh
Q psy16578        124 FICPKCSNRYVYKHNLKQHLKFECGVEPQFKCP--YCDKRCKLKG  166 (177)
Q Consensus       124 ~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~--~C~~~f~~~~  166 (177)
                      +.|+.|+..-.....-.....   ..+..++|.  .||.+|....
T Consensus         2 m~CP~Cg~~a~irtSr~~s~~---~~~~Y~qC~N~eCg~tF~t~e   43 (72)
T PRK09678          2 FHCPLCQHAAHARTSRYITDT---TKERYHQCQNVNCSATFITYE   43 (72)
T ss_pred             ccCCCCCCccEEEEChhcChh---hheeeeecCCCCCCCEEEEEE
Confidence            578888866543332222211   226668998  8999887653

>PRK00464 nrdR transcriptional regulator NrdR; Validated

Probab=86.15  E-value=0.11  Score=33.87  Aligned_cols=14  Identities=29%  Similarity=0.439  Sum_probs=10.6

Q ss_pred             ccCCCCcccccchh
Q psy16578        153 FKCPYCDKRCKLKG  166 (177)
Q Consensus       153 ~~C~~C~~~f~~~~  166 (177)
                      ++|+.||++|....
T Consensus        29 ~~c~~c~~~f~~~e   42 (154)
T PRK00464         29 RECLACGKRFTTFE   42 (154)
T ss_pred             eeccccCCcceEeE
Confidence            78888888887654

>PF15269 zf-C2H2_7: Zinc-finger

Probab=85.85  E-value=0.55  Score=23.44  Aligned_cols=20  Identities=25%  Similarity=0.497  Sum_probs=11.1

Q ss_pred             eecCCccccccChhHHHHHH
Q psy16578        124 FICPKCSNRYVYKHNLKQHL  143 (177)
Q Consensus       124 ~~C~~C~~~f~~~~~l~~H~  143 (177)
                      |+|-+|...+..++.|..||
T Consensus        21 ykcfqcpftc~~kshl~nhm   40 (54)
T PF15269_consen   21 YKCFQCPFTCNEKSHLFNHM   40 (54)
T ss_pred             ceeecCCcccchHHHHHHHH
Confidence            45555555555555555554

>COG1997 RPL43A Ribosomal protein L37AE/L43A [Translation, ribosomal structure and biogenesis]

Probab=85.55  E-value=0.59  Score=27.13  Aligned_cols=15  Identities=27%  Similarity=0.864  Sum_probs=12.5

Q ss_pred             CCCceecCCcccccc
Q psy16578        120 LNGSFICPKCSNRYV  134 (177)
Q Consensus       120 ~~~~~~C~~C~~~f~  134 (177)
                      ..+.|.|..|+..|.
T Consensus        50 a~GIW~C~kCg~~fA   64 (89)
T COG1997          50 ATGIWKCRKCGAKFA   64 (89)
T ss_pred             ccCeEEcCCCCCeec
Confidence            456799999999885

>PF05443 ROS_MUCR: ROS/MUCR transcriptional regulator protein; InterPro: IPR008807 This family consists of several ROS/MUCR transcriptional regulator proteins

Probab=85.45  E-value=0.62  Score=29.60  Aligned_cols=23  Identities=35%  Similarity=0.661  Sum_probs=15.2

Q ss_pred             eeCCCCccccccchHHHhHHHHhcCC
Q psy16578         79 FKCPHCNKKCHQKCNLKSHIALKHDQ  104 (177)
Q Consensus        79 ~~C~~C~~~f~~~~~l~~H~~~~~~~  104 (177)
                      ..|-+||+.|+.   |.+|+..|||.
T Consensus        73 i~clecGk~~k~---LkrHL~~~~gl   95 (132)
T PF05443_consen   73 IICLECGKKFKT---LKRHLRTHHGL   95 (132)
T ss_dssp             EE-TBT--EESB---HHHHHHHTT-S
T ss_pred             eEEccCCcccch---HHHHHHHccCC
Confidence            679999988876   58899888875

The ros chromosomal gene is present in octopine and nopaline strains of Agrobacterium tumefaciens as well as in Rhizobium meliloti (Sinorhizobium meliloti). This gene encodes a 15.5 kDa protein that specifically represses the virC and virD operons in the virulence region of the Ti plasmid [] and is necessary for succinoglycan production []. S. meliloti can produce two types of acidic exopolysaccharides, succinoglycan and galactoglucan, that are interchangeable for infection of Medicago sativa (Alfalfa) nodules. MucR from S. meliloti acts as a transcriptional repressor that blocks the expression of the exp genes responsible for galactoglucan production therefore allowing the exclusive production of succinoglycan [].; GO: 0003677 DNA binding, 0008270 zinc ion binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2JSP_A.

>PRK06266 transcription initiation factor E subunit alpha; Validated

Probab=85.29  E-value=0.56  Score=31.54  Aligned_cols=32  Identities=31%  Similarity=0.899  Sum_probs=24.4

Q ss_pred             CCceecCCccccccChhHHHHHHHHhhCCCCCccCCCCcccc
Q psy16578        121 NGSFICPKCSNRYVYKHNLKQHLKFECGVEPQFKCPYCDKRC  162 (177)
Q Consensus       121 ~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C~~~f  162 (177)
                      ..-|.|+.|+..|..-..+.         . .|.|+.||...
T Consensus       115 ~~~Y~Cp~C~~rytf~eA~~---------~-~F~Cp~Cg~~L  146 (178)
T PRK06266        115 NMFFFCPNCHIRFTFDEAME---------Y-GFRCPQCGEML  146 (178)
T ss_pred             CCEEECCCCCcEEeHHHHhh---------c-CCcCCCCCCCC
Confidence            35699999999998776652         2 39999999643

>KOG4167|consensus

Probab=84.82  E-value=0.52  Score=38.22  Aligned_cols=30  Identities=23%  Similarity=0.615  Sum_probs=25.5

Q ss_pred             CCCccccCccchhccChHHHHHHHHHHhCC
Q psy16578         46 GEDVFACPKCSKTYLRQYTLNAHLRYECGK   75 (177)
Q Consensus        46 ~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~   75 (177)
                      ...-|.|.+|++.|....++..||++|.-.
T Consensus       789 ~~giFpCreC~kvF~KiKSrNAHMK~Hr~q  818 (907)
T KOG4167|consen  789 PTGIFPCRECGKVFFKIKSRNAHMKTHRQQ  818 (907)
T ss_pred             CCceeehHHHHHHHHHHhhhhHHHHHHHHH
Confidence            345589999999999999999999999744

>PF03604 DNA_RNApol_7kD: DNA directed RNA polymerase, 7 kDa subunit; InterPro: IPR006591 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates

Probab=84.68  E-value=0.88  Score=21.15  Aligned_cols=12  Identities=33%  Similarity=1.013  Sum_probs=7.9

Q ss_pred             CceecCCccccc
Q psy16578        122 GSFICPKCSNRY  133 (177)
Q Consensus       122 ~~~~C~~C~~~f  133 (177)
                      .+..|+.||...
T Consensus        16 ~~irC~~CG~RI   27 (32)
T PF03604_consen   16 DPIRCPECGHRI   27 (32)
T ss_dssp             STSSBSSSS-SE
T ss_pred             CcEECCcCCCeE
Confidence            457888888654

Each class of RNA polymerase is assembled from 9 to 15 different polypeptides. Rbp10 (RNA polymerase CX) is a domain found in RNA polymerase subunit 10; present in RNA polymerase I, II and III.; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 2PMZ_Z 3HKZ_X 2NVX_L 3S1Q_L 2JA6_L 3S17_L 3HOW_L 3HOV_L 3PO2_L 3HOZ_L ....

>smart00531 TFIIE Transcription initiation factor IIE

Probab=84.34  E-value=0.58  Score=30.39  Aligned_cols=37  Identities=24%  Similarity=0.671  Sum_probs=22.9

Q ss_pred             CCccccCccchhccChHHHHHHHHHHhCCCCceeCCCCcccc
Q psy16578         47 EDVFACPKCSKTYLRQYTLNAHLRYECGKRPKFKCPHCNKKC   88 (177)
Q Consensus        47 ~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C~~~f   88 (177)
                      ...|.|+.|+..|....++.. .  . .... |.|+.||...
T Consensus        97 ~~~Y~Cp~C~~~y~~~ea~~~-~--d-~~~~-f~Cp~Cg~~l  133 (147)
T smart00531       97 NAYYKCPNCQSKYTFLEANQL-L--D-MDGT-FTCPRCGEEL  133 (147)
T ss_pred             CcEEECcCCCCEeeHHHHHHh-c--C-CCCc-EECCCCCCEE
Confidence            445888888888875444322 1  1 1223 8888888764

>TIGR00373 conserved hypothetical protein TIGR00373

Probab=84.14  E-value=0.74  Score=30.33  Aligned_cols=32  Identities=22%  Similarity=0.600  Sum_probs=24.5

Q ss_pred             CCccccCccchhccChHHHHHHHHHHhCCCCceeCCCCcccc
Q psy16578         47 EDVFACPKCSKTYLRQYTLNAHLRYECGKRPKFKCPHCNKKC   88 (177)
Q Consensus        47 ~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C~~~f   88 (177)
                      ..-|.|+.|+..|+...++..         . |.|+.||...
T Consensus       107 ~~~Y~Cp~c~~r~tf~eA~~~---------~-F~Cp~Cg~~L  138 (158)
T TIGR00373       107 NMFFICPNMCVRFTFNEAMEL---------N-FTCPRCGAML  138 (158)
T ss_pred             CCeEECCCCCcEeeHHHHHHc---------C-CcCCCCCCEe
Confidence            345889999998888877741         3 9999999763

This family of proteins is, so far, restricted to archaeal genomes. The family appears to be distantly related to the N-terminal region of the eukaryotic transcription initiation factor IIE alpha chain.

>PF09723 Zn-ribbon_8: Zinc ribbon domain; InterPro: IPR013429 This entry represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria

Probab=84.06  E-value=0.42  Score=23.74  Aligned_cols=14  Identities=14%  Similarity=0.631  Sum_probs=11.3

Q ss_pred             eeCCCCccccccch
Q psy16578         79 FKCPHCNKKCHQKC   92 (177)
Q Consensus        79 ~~C~~C~~~f~~~~   92 (177)
                      |.|..||..|....
T Consensus         6 y~C~~Cg~~fe~~~   19 (42)
T PF09723_consen    6 YRCEECGHEFEVLQ   19 (42)
T ss_pred             EEeCCCCCEEEEEE
Confidence            88999998886653

The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB []. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.

>PF13719 zinc_ribbon_5: zinc-ribbon domain

Probab=83.18  E-value=1.3  Score=21.29  Aligned_cols=34  Identities=21%  Similarity=0.573  Sum_probs=22.7

Q ss_pred             eeCCCCccccccchHHHhHHHHhcCCCCCCCCccccccccCCCCceecCCcccccc
Q psy16578         79 FKCPHCNKKCHQKCNLKSHIALKHDQLLAPLAPRSYRRNSQLNGSFICPKCSNRYV  134 (177)
Q Consensus        79 ~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~C~~~f~  134 (177)
                      ..|+.|+..|.-..+-.                      ....+...|..|+..|.
T Consensus         3 i~CP~C~~~f~v~~~~l----------------------~~~~~~vrC~~C~~~f~   36 (37)
T PF13719_consen    3 ITCPNCQTRFRVPDDKL----------------------PAGGRKVRCPKCGHVFR   36 (37)
T ss_pred             EECCCCCceEEcCHHHc----------------------ccCCcEEECCCCCcEee
Confidence            57888988887664321                      11345689999988774

>PF04959 ARS2: Arsenite-resistance protein 2; InterPro: IPR007042 This entry represents Arsenite-resistance protein 2 (also known as Serrate RNA effector molecule homolog) which is thought to play a role in arsenite resistance [], although does not directly confer arsenite resistance but rather modulates arsenic sensitivity []

Probab=83.16  E-value=0.68  Score=32.06  Aligned_cols=25  Identities=16%  Similarity=0.458  Sum_probs=14.0

Q ss_pred             CCceecCCccccccChhHHHHHHHH
Q psy16578        121 NGSFICPKCSNRYVYKHNLKQHLKF  145 (177)
Q Consensus       121 ~~~~~C~~C~~~f~~~~~l~~H~~~  145 (177)
                      +..|.|..|+|.|+-..-.++|+..
T Consensus        75 ~~K~~C~lc~KlFkg~eFV~KHI~n   99 (214)
T PF04959_consen   75 EDKWRCPLCGKLFKGPEFVRKHIFN   99 (214)
T ss_dssp             SEEEEE-SSS-EESSHHHHHHHHHH
T ss_pred             CCEECCCCCCcccCChHHHHHHHhh
Confidence            3346666666666666666666654

Arsenite is a carcinogenic compound which can act as a comutagen by inhibiting DNA repair. It is also involved in cell cycle progression at S phase. ; PDB: 3AX1_A.

>smart00834 CxxC_CXXC_SSSS Putative regulatory protein

Probab=83.12  E-value=0.57  Score=22.84  Aligned_cols=13  Identities=15%  Similarity=0.713  Sum_probs=10.5

Q ss_pred             eeCCCCccccccc
Q psy16578         79 FKCPHCNKKCHQK   91 (177)
Q Consensus        79 ~~C~~C~~~f~~~   91 (177)
                      |.|+.||..|...
T Consensus         6 y~C~~Cg~~fe~~   18 (41)
T smart00834        6 YRCEDCGHTFEVL   18 (41)
T ss_pred             EEcCCCCCEEEEE
Confidence            7899999888654

CxxC_CXXC_SSSS represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.

>PF04959 ARS2: Arsenite-resistance protein 2; InterPro: IPR007042 This entry represents Arsenite-resistance protein 2 (also known as Serrate RNA effector molecule homolog) which is thought to play a role in arsenite resistance [], although does not directly confer arsenite resistance but rather modulates arsenic sensitivity []

Probab=82.85  E-value=1  Score=31.25  Aligned_cols=26  Identities=31%  Similarity=0.617  Sum_probs=18.7

Q ss_pred             eeCCCCccccccchHHHhHHHHhcCC
Q psy16578         79 FKCPHCNKKCHQKCNLKSHIALKHDQ  104 (177)
Q Consensus        79 ~~C~~C~~~f~~~~~l~~H~~~~~~~  104 (177)
                      |.|++|++.|...--+..|+...|..
T Consensus        78 ~~C~lc~KlFkg~eFV~KHI~nKH~e  103 (214)
T PF04959_consen   78 WRCPLCGKLFKGPEFVRKHIFNKHPE  103 (214)
T ss_dssp             EEE-SSS-EESSHHHHHHHHHHH-HH
T ss_pred             ECCCCCCcccCChHHHHHHHhhcCHH
Confidence            88888888888888888888888864

Arsenite is a carcinogenic compound which can act as a comutagen by inhibiting DNA repair. It is also involved in cell cycle progression at S phase. ; PDB: 3AX1_A.

>PRK06266 transcription initiation factor E subunit alpha; Validated

Probab=82.60  E-value=0.77  Score=30.88  Aligned_cols=31  Identities=26%  Similarity=0.759  Sum_probs=23.3

Q ss_pred             CccccCccchhccChHHHHHHHHHHhCCCCceeCCCCcccc
Q psy16578         48 DVFACPKCSKTYLRQYTLNAHLRYECGKRPKFKCPHCNKKC   88 (177)
Q Consensus        48 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C~~~f   88 (177)
                      .-|.|+.|+..|+...++.         .. |.|+.||...
T Consensus       116 ~~Y~Cp~C~~rytf~eA~~---------~~-F~Cp~Cg~~L  146 (178)
T PRK06266        116 MFFFCPNCHIRFTFDEAME---------YG-FRCPQCGEML  146 (178)
T ss_pred             CEEECCCCCcEEeHHHHhh---------cC-CcCCCCCCCC
Confidence            4588999998888877653         13 9999998753

>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines

Probab=82.45  E-value=0.63  Score=20.49  Aligned_cols=11  Identities=27%  Similarity=0.603  Sum_probs=6.0

Q ss_pred             ccCCCCccccc
Q psy16578        153 FKCPYCDKRCK  163 (177)
Q Consensus       153 ~~C~~C~~~f~  163 (177)
                      -.|+.||+.|.
T Consensus        15 ~~Cp~CG~~F~   25 (26)
T PF10571_consen   15 KFCPHCGYDFE   25 (26)
T ss_pred             CcCCCCCCCCc
Confidence            34666666553

Several members are annotated as putative helicases.

>TIGR02605 CxxC_CxxC_SSSS putative regulatory protein, FmdB family

Probab=81.86  E-value=0.5  Score=24.55  Aligned_cols=30  Identities=23%  Similarity=0.790  Sum_probs=20.2

Q ss_pred             ceecCCccccccChhHHHHHHHHhhCCCCCccCCCCcc
Q psy16578        123 SFICPKCSNRYVYKHNLKQHLKFECGVEPQFKCPYCDK  160 (177)
Q Consensus       123 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C~~  160 (177)
                      .|.|..|+..|.....+..        ...-.|+.||.
T Consensus         5 ey~C~~Cg~~fe~~~~~~~--------~~~~~CP~Cg~   34 (52)
T TIGR02605         5 EYRCTACGHRFEVLQKMSD--------DPLATCPECGG   34 (52)
T ss_pred             EEEeCCCCCEeEEEEecCC--------CCCCCCCCCCC
Confidence            3899999998875432211        23367999985

This model represents a region of about 50 amino acids found in a number of small proteins in a wide range of bacteria. The region begins usually with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One member of this family is has been noted as a putative regulatory protein, designated FmdB (PubMed:8841393). Most members of this family have a C-terminal region containing highly degenerate sequence, such as SSTSESTKSSGSSGSSGSSESKASGSTEKSTSSTTAAAAV in Mycobacterium tuberculosis and VAVGGSAPAPSPAPRAGGGGGGCCGGGCCG in Streptomyces avermitilis. These low complexity regions, which are not included in the model, resemble low-complexity C-terminal regions of some heterocycle-containing bacteriocin precursors.

>PF01780 Ribosomal_L37ae: Ribosomal L37ae protein family; InterPro: IPR002674 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=81.13  E-value=0.76  Score=27.01  Aligned_cols=15  Identities=27%  Similarity=0.895  Sum_probs=12.3

Q ss_pred             CCCceecCCcccccc
Q psy16578        120 LNGSFICPKCSNRYV  134 (177)
Q Consensus       120 ~~~~~~C~~C~~~f~  134 (177)
                      ..+.|.|..|++.|.
T Consensus        50 a~GIW~C~~C~~~~A   64 (90)
T PF01780_consen   50 ATGIWKCKKCGKKFA   64 (90)
T ss_dssp             ETTEEEETTTTEEEE
T ss_pred             eeEEeecCCCCCEEe
Confidence            456799999998885

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This ribosomal protein is found in archaebacteria and eukaryotes []. Ribosomal protein L37 has a single zinc finger-like motif of the C2-C2 type [].; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 4A1E_Y 4A17_Y 4A1C_Y 4A1A_Y 3O58_g 3IZS_m 3O5H_g 1S1I_9 3IZR_m 1YSH_D ....

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	177
2i13_A	190	Aart, A Six Finger Zinc Finger Designed To Recogniz		1e-08
2dlq_A	124	Solution Structure Of The Tandem Four Zf-C2h2 Domai		1e-06

>pdb|2I13|A Chain A, Aart, A Six Finger Zinc Finger Designed To Recognize Ann Triplets Length = 190

Iteration: 1
 Score = 56.2 bits (134), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 39/137 (28%), Positives = 62/137 (45%), Gaps = 13/137 (9%)
Query: 46  GEDVFACPKCSKTYLRQYTLNAHLRYECGKRPKFKCPHCNKKCHQKCNLKSHIALKHDQ- 104
           GE  +ACP+C K++ R   L  H R   G++P +KCP C K    K +L  H      + 
Sbjct: 18  GEKPYACPECGKSFSRSDHLAEHQRTHTGEKP-YKCPECGKSFSDKKDLTRHQRTHTGEK 76
Query: 105 -LLAPLAPRSYRRNSQLNG---------SFICPKCSNRYVYKHNLKQHLKFECGVEPQFK 154
               P   +S+ + + L            + CP+C   +    +L+ H +   G +P +K
Sbjct: 77  PYKCPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQRTHTGEKP-YK 135
Query: 155 CPYCDKRCKLKGNLMSH 171
           CP C K    + NL +H
Sbjct: 136 CPECGKSFSREDNLHTH 152

>pdb|2DLQ|A Chain A, Solution Structure Of The Tandem Four Zf-C2h2 Domain Repeats Of Murine Gli-Kruppel Family Member Hkr3 Length = 124

Iteration: 1
 Score = 49.3 bits (116), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 38/133 (28%), Positives = 59/133 (44%), Gaps = 16/133 (12%)
Query: 45  AGEDVFACPKCSKTYLRQYTLNAHLRYECGKRPKFKCPHCNKKCHQKCNLKSHIALKHDQ 104
           +G     CP C K +L +Y L  H R   G++P F+CP C      KC  +    L+H+ 
Sbjct: 3   SGSSGVECPTCHKKFLSKYYLKVHNRKHTGEKP-FECPKCG-----KCYFRKENLLEHE- 55
Query: 105 LLAPLAPRSYRRNSQLNGSFICPKCSNRYVYKHNLKQHLKFECGVEPQFKCPYCDKRCKL 164
                A     R+ Q+   F C  C   +  +  L+ H+    G  P +KC  C ++   
Sbjct: 56  -----ARNCMNRSEQV---FTCSVCQETFRRRMELRLHMVSHTGEMP-YKCSSCSQQFMQ 106
Query: 165 KGNLMSHIALKHT 177
           K +L SH+   H+
Sbjct: 107 KKDLQSHMIKLHS 119

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	177
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	8e-08
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	5e-05
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	5e-07
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	1e-04
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	2e-04
2drp_A	66	Protein (tramtrack DNA-binding domain); protein-DN	1e-06
1x5w_A	70	Zinc finger protein 64, isoforms 1; ZNF338, nuclea	4e-06
1x5w_A	70	Zinc finger protein 64, isoforms 1; ZNF338, nuclea	1e-04
2dlq_A	124	GLI-kruppel family member HKR3; ZF-C2H2 domain, st	7e-06
1a1h_A	90	QGSR zinc finger peptide; complex (zinc finger/DNA	8e-05
2yt9_A	95	Zinc finger-containing protein 1; C2H2, structural	5e-04
2ghf_A	102	ZHX1, zinc fingers and homeoboxes protein 1; C2H2	5e-04
2wbt_A	129	B-129; zinc finger; 2.70A {Sulfolobus virus 1} Len	7e-04

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 77

 Score = 46.4 bits (111), Expect = 8e-08
 Identities = 15/58 (25%), Positives = 27/58 (46%), Gaps = 1/58 (1%)

Query: 46  GEDVFACPKCSKTYLRQYTLNAHLRYECGKRPK-FKCPHCNKKCHQKCNLKSHIALKH 102
           GE  + C  C   + +  T+  H+  +  +    F CPHC+    +K +L  H+  +H
Sbjct: 12  GEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRKQH 69

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 77

 Score = 39.0 bits (92), Expect = 5e-05
 Identities = 21/114 (18%), Positives = 37/114 (32%), Gaps = 45/114 (39%)

Query: 64  TLNAHLRYECGKRPKFKCPHCNKKCHQKCNLKSHIALKHDQLLAPLAPRSYRRNSQLNGS 123
           +  +  R   G++P ++C  C+ +  Q   +K HI  KH + +A                
Sbjct: 2   SSGSSGRTHSGEKP-YECYICHARFTQSGTMKMHILQKHTENVAK--------------- 45

Query: 124 FICPKCSNRYVYKHNLKQHLKFECGVEPQFKCPYCDKRCKLKGNLMSHIALKHT 177
                                        F CP+CD     K +L  H+  +H+
Sbjct: 46  -----------------------------FHCPHCDTVIARKSDLGVHLRKQHS 70

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 78

 Score = 44.3 bits (105), Expect = 5e-07
 Identities = 16/66 (24%), Positives = 25/66 (37%), Gaps = 4/66 (6%)

Query: 46  GEDVFACPKCSKTYLRQYTLNAHLR---YECGKRPKFKCPHCNKKCHQKCNLKSHIALKH 102
           G     C  C  T  ++ +LN H R           F C  C K+  +  ++ +H +  H
Sbjct: 4   GSSGLQCEICGFTCRQKASLNWHQRKHAETVAALR-FPCEFCGKRFEKPDSVAAHRSKSH 62

Query: 103 DQLLAP 108
             LL  
Sbjct: 63  PALLLA 68

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 78

 Score = 38.2 bits (89), Expect = 1e-04
 Identities = 12/57 (21%), Positives = 20/57 (35%), Gaps = 4/57 (7%)

Query: 124 FICPKCSNRYVYKHNLKQHLK---FECGVEPQFKCPYCDKRCKLKGNLMSHIALKHT 177
             C  C      K +L  H +           F C +C KR +   ++ +H +  H 
Sbjct: 8   LQCEICGFTCRQKASLNWHQRKHAETVAALR-FPCEFCGKRFEKPDSVAAHRSKSHP 63

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 78

 Score = 37.8 bits (88), Expect = 2e-04
 Identities = 14/73 (19%), Positives = 23/73 (31%), Gaps = 19/73 (26%)

Query: 74  GKRPKFKCPHCNKKCHQKCNLKSHIALKHDQLLAPLAPRSYRRNSQLNG--SFICPKCSN 131
           G     +C  C   C QK +L  H                 R++++      F C  C  
Sbjct: 4   GSSG-LQCEICGFTCRQKASLNWHQ----------------RKHAETVAALRFPCEFCGK 46

Query: 132 RYVYKHNLKQHLK 144
           R+    ++  H  
Sbjct: 47  RFEKPDSVAAHRS 59

>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1 Length = 66

 Score = 43.3 bits (103), Expect = 1e-06
 Identities = 15/59 (25%), Positives = 25/59 (42%), Gaps = 3/59 (5%)

Query: 46  GEDVFACPKCSKTYLRQYTLNAHLRYEC--GKRPKFKCPHCNKKCHQKCNLKSHIALKH 102
           GE  + C  CS+ Y        H         +  + CP C K+  +K N+ +H+ + H
Sbjct: 7   GEHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKV-YPCPFCFKEFTRKDNMTAHVKIIH 64

>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 70

 Score = 41.7 bits (99), Expect = 4e-06
 Identities = 18/57 (31%), Positives = 24/57 (42%), Gaps = 2/57 (3%)

Query: 46  GEDVFACPKCSKTYLRQYTLNAHLRYECGKRPKFKCPHCNKKCHQKCNLKSHIALKH 102
                 C +CS +   +  L  H R  C  RP FKC +C+    Q  NL  H+  K 
Sbjct: 6   SGHPEKCSECSYSCSSKAALRIHERIHCTDRP-FKCNYCSFDTKQPSNLSKHMK-KF 60

>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 70

 Score = 37.9 bits (89), Expect = 1e-04
 Identities = 18/54 (33%), Positives = 22/54 (40%), Gaps = 2/54 (3%)

Query: 124 FICPKCSNRYVYKHNLKQHLKFECGVEPQFKCPYCDKRCKLKGNLMSHIALKHT 177
             C +CS     K  L+ H +  C   P FKC YC    K   NL  H+  K  
Sbjct: 10  EKCSECSYSCSSKAALRIHERIHCTDRP-FKCNYCSFDTKQPSNLSKHMK-KFH 61

>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 Length = 124

 Score = 42.5 bits (101), Expect = 7e-06
 Identities = 38/135 (28%), Positives = 56/135 (41%), Gaps = 22/135 (16%)

Query: 46  GEDVFACPKCSKTYLRQYTLNAHLRYECGKRPKFKCPHCNKKCHQKCNLKSHIALKHDQL 105
           G     CP C K +L +Y L  H R   G++P F+CP C K   +K NL  H        
Sbjct: 4   GSSGVECPTCHKKFLSKYYLKVHNRKHTGEKP-FECPKCGKCYFRKENLLEH-------- 54

Query: 106 LAPLAPRSYRRNSQLNGS---FICPKCSNRYVYKHNLKQHLKFECGVEPQFKCPYCDKRC 162
                       + +N S   F C  C   +  +  L+ H+    G  P +KC  C ++ 
Sbjct: 55  ---------EARNCMNRSEQVFTCSVCQETFRRRMELRLHMVSHTGEMP-YKCSSCSQQF 104

Query: 163 KLKGNLMSHIALKHT 177
             K +L SH+   H+
Sbjct: 105 MQKKDLQSHMIKLHS 119

>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C Length = 90

 Score = 38.6 bits (91), Expect = 8e-05
 Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 1/52 (1%)

Query: 46 GEDVFACPKCSKTYLRQYTLNAHLRYECGKRPKFKCPHCNKKCHQKCNLKSH 97
          G+  F C  C + + R   L  H+R   G++P F C  C +K  +    K H
Sbjct: 31 GQKPFQCRICMRNFSRSDHLTTHIRTHTGEKP-FACDICGRKFARSDERKRH 81

>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 Length = 95

 Score = 36.7 bits (86), Expect = 5e-04
 Identities = 16/52 (30%), Positives = 23/52 (44%), Gaps = 1/52 (1%)

Query: 46 GEDVFACPKCSKTYLRQYTLNAHLRYECGKRPKFKCPHCNKKCHQKCNLKSH 97
          G    AC  C K +   Y LN H     G++P + CP C  +  +K  +  H
Sbjct: 4  GSSGVACEICGKIFRDVYHLNRHKLSHSGEKP-YSCPVCGLRFKRKDRMSYH 54

>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers, 4-stranded parallel/anti-parallel beta- sheet, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 102

 Score = 37.1 bits (85), Expect = 5e-04
 Identities = 12/69 (17%), Positives = 24/69 (34%), Gaps = 3/69 (4%)

Query: 112 RSYRRNSQLNGSFICPKCSNRYVYKHNLKQHLKFE---CGVEPQFKCPYCDKRCKLKGNL 168
              ++N ++ G + C  C+ +    +    H+  E     +   + C  C+   K    L
Sbjct: 7   HHNQQNKKVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRYDAL 66

Query: 169 MSHIALKHT 177
             H    H 
Sbjct: 67  SEHNLKYHP 75

>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1} Length = 129

 Score = 37.2 bits (85), Expect = 7e-04
 Identities = 23/94 (24%), Positives = 39/94 (41%), Gaps = 5/94 (5%)

Query: 84  CNKKCHQKCNLKSHIALKHDQLLAPLAPRSYRRNSQLNGSFICPKCSNRYVYKHNLKQHL 143
             +K   +  +K+ I   + QLL   +       S+    F+CP C   +    +LKQH+
Sbjct: 37  PEQKRLIRAIVKTLI--HNPQLLDESSYLYRLLASKAISQFVCPLCLMPFSSSVSLKQHI 94

Query: 144 KFECGVEPQFKCPYCDKRCKLKGNLMSHIALKHT 177
           ++    E    CP C K      + + H+  KH 
Sbjct: 95  RYT---EHTKVCPVCKKEFTSTDSALDHVCKKHN 125

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	177
2dlq_A	124	GLI-kruppel family member HKR3; ZF-C2H2 domain, st	99.96
2jp9_A	119	Wilms tumor 1; DNA binding, nucleic acid recogniti	99.95
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	99.95
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	99.94
1ubd_C	124	Protein (YY1 zinc finger domain); transcription in	99.94
2lt7_A	133	Transcriptional regulator kaiso; zinc finger, doub	99.93
2rpc_A	155	Zinc finger protein ZIC 3; ZF-C2H2, zinc finger pr	99.93
1tf6_A	190	Protein (transcription factor IIIA); complex (tran	99.93
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	99.92
1tf6_A	190	Protein (transcription factor IIIA); complex (tran	99.91
2lt7_A	133	Transcriptional regulator kaiso; zinc finger, doub	99.9
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	99.89
2kmk_A	82	Zinc finger protein GFI-1; tandem repeat zinc fing	99.88
2dmd_A	96	Zinc finger protein 64, isoforms 1 and 2; ZNF338,	99.87
2ee8_A	106	Protein ODD-skipped-related 2; zinc binding, ZF-C2	99.86
1a1h_A	90	QGSR zinc finger peptide; complex (zinc finger/DNA	99.86
2ee8_A	106	Protein ODD-skipped-related 2; zinc binding, ZF-C2	99.86
2yt9_A	95	Zinc finger-containing protein 1; C2H2, structural	99.85
2dmd_A	96	Zinc finger protein 64, isoforms 1 and 2; ZNF338,	99.85
2dmi_A	115	Teashirt homolog 3; zinc finger protein 537, struc	99.85
2kmk_A	82	Zinc finger protein GFI-1; tandem repeat zinc fing	99.84
2csh_A	110	Zinc finger protein 297B; ZF-C2H2 domain, zinc fin	99.84
4gzn_C	60	ZFP-57, zinc finger protein 57; transcription-DNA	99.84
1a1h_A	90	QGSR zinc finger peptide; complex (zinc finger/DNA	99.84
2yt9_A	95	Zinc finger-containing protein 1; C2H2, structural	99.83
1wjp_A	107	Zinc finger protein 295; ZF-C2H2 domain, zinc bind	99.83
2ebt_A	100	Krueppel-like factor 5; C2H2-type zinc-finger, met	99.82
2csh_A	110	Zinc finger protein 297B; ZF-C2H2 domain, zinc fin	99.81
1wjp_A	107	Zinc finger protein 295; ZF-C2H2 domain, zinc bind	99.81
2ebt_A	100	Krueppel-like factor 5; C2H2-type zinc-finger, met	99.8
1llm_C	88	Chimera of ZIF23-GCN4; dimerization, DNA recogniti	99.8
2jp9_A	119	Wilms tumor 1; DNA binding, nucleic acid recogniti	99.8
2wbs_A	89	Krueppel-like factor 4; transcription-DNA complex,	99.8
2j7j_A	85	Transcription factor IIIA; zinc finger module, alt	99.8
2dlq_A	124	GLI-kruppel family member HKR3; ZF-C2H2 domain, st	99.79
2rpc_A	155	Zinc finger protein ZIC 3; ZF-C2H2, zinc finger pr	99.79
2dmi_A	115	Teashirt homolog 3; zinc finger protein 537, struc	99.78
1ubd_C	124	Protein (YY1 zinc finger domain); transcription in	99.77
1llm_C	88	Chimera of ZIF23-GCN4; dimerization, DNA recogniti	99.76
2wbs_A	89	Krueppel-like factor 4; transcription-DNA complex,	99.76
2wbt_A	129	B-129; zinc finger; 2.70A {Sulfolobus virus 1}	99.74
4gzn_C	60	ZFP-57, zinc finger protein 57; transcription-DNA	99.73
2j7j_A	85	Transcription factor IIIA; zinc finger module, alt	99.72
1x6h_A	86	Transcriptional repressor CTCF; zinc finger protei	99.72
3uk3_C	57	Zinc finger protein 217; transcription factor, DNA	99.72
2dlk_A	79	Novel protein; ZF-C2H2 domain, zinc finger protein	99.72
1x5w_A	70	Zinc finger protein 64, isoforms 1; ZNF338, nuclea	99.7
1x6e_A	72	Zinc finger protein 24; ZNF24, KOX17, ZNF191, zsca	99.69
2drp_A	66	Protein (tramtrack DNA-binding domain); protein-DN	99.69
2lv2_A	85	Insulinoma-associated protein 1; structural genomi	99.69
2gqj_A	98	Zinc finger protein KIAA1196; ZF-C2H2 like domain,	99.68
2lce_A	74	B-cell lymphoma 6 protein; structural genomics, no	99.68
2dlk_A	79	Novel protein; ZF-C2H2 domain, zinc finger protein	99.67
2ctd_A	96	Zinc finger protein 512; zinc binding, two ZF-C2H2	99.66
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	99.65
1bbo_A	57	Human enhancer-binding protein MBP-1; DNA-binding	99.65
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	99.65
2cot_A	77	Zinc finger protein 435; ADK_LID domain, zinc fing	99.64
2ghf_A	102	ZHX1, zinc fingers and homeoboxes protein 1; C2H2	99.64
2ctd_A	96	Zinc finger protein 512; zinc binding, two ZF-C2H2	99.64
2gqj_A	98	Zinc finger protein KIAA1196; ZF-C2H2 like domain,	99.63
2cot_A	77	Zinc finger protein 435; ADK_LID domain, zinc fing	99.62
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	99.62
2adr_A	60	ADR1; transcription regulation, zinc finger,; NMR	99.61
1f2i_G	73	Fusion of N-terminal 17-MER peptide extension to Z	99.61
1x6h_A	86	Transcriptional repressor CTCF; zinc finger protei	99.61
1x5w_A	70	Zinc finger protein 64, isoforms 1; ZNF338, nuclea	99.59
3uk3_C	57	Zinc finger protein 217; transcription factor, DNA	99.58
2lce_A	74	B-cell lymphoma 6 protein; structural genomics, no	99.58
2lv2_A	85	Insulinoma-associated protein 1; structural genomi	99.58
2ghf_A	102	ZHX1, zinc fingers and homeoboxes protein 1; C2H2	99.58
1x6e_A	72	Zinc finger protein 24; ZNF24, KOX17, ZNF191, zsca	99.56
2wbt_A	129	B-129; zinc finger; 2.70A {Sulfolobus virus 1}	99.55
1bbo_A	57	Human enhancer-binding protein MBP-1; DNA-binding	99.54
2drp_A	66	Protein (tramtrack DNA-binding domain); protein-DN	99.54
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	99.53
2ctu_A	73	Zinc finger protein 483; zinc finger domain, struc	99.49
2eod_A	66	TNF receptor-associated factor 4; zinc binding, NF	99.49
2epa_A	72	Krueppel-like factor 10; transforming growth facto	99.47
2ej4_A	95	Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc bi	99.47
2adr_A	60	ADR1; transcription regulation, zinc finger,; NMR	99.45
1f2i_G	73	Fusion of N-terminal 17-MER peptide extension to Z	99.4
2eps_A	54	POZ-, at HOOK-, and zinc finger-containing protein	99.39
2ej4_A	95	Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc bi	99.37
2epa_A	72	Krueppel-like factor 10; transforming growth facto	99.3
2eod_A	66	TNF receptor-associated factor 4; zinc binding, NF	99.29
2epr_A	48	POZ-, at HOOK-, and zinc finger-containing protein	99.28
2epq_A	45	POZ-, at HOOK-, and zinc finger-containing protein	99.27
2eoo_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.25
2em8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.25
2emm_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.25
2ely_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	99.25
2emy_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.25
2eps_A	54	POZ-, at HOOK-, and zinc finger-containing protein	99.25
2emx_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.25
2emk_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.24
2emh_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.24
2ytd_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.24
2ytk_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.24
2ytm_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.24
2ene_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.24
2eoq_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.24
2enc_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.24
2ep2_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.24
2emp_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.24
2en6_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.24
2elz_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	99.24
2el6_A	46	Zinc finger protein 268; alternative splicing, DNA	99.24
2ytj_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.23
2eml_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.23
2eov_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.23
2emf_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.23
2ytq_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.23
2eq4_A	46	Zinc finger protein 224; C2H2, zinc finger domain,	99.23
2ema_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.23
2em5_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.23
2em7_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.23
2epz_A	46	Zinc finger protein 28 homolog; C2H2, zinc finger	99.23
2eme_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.22
2yso_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.22
2eq0_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.22
2ytn_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.22
2eoe_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.22
2epw_A	46	Zinc finger protein 268; C2H2, zinc finger domain,	99.22
2yu8_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.22
2el4_A	46	Zinc finger protein 268; alternative splicing, DNA	99.21
2ytt_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.21
2ysp_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.21
2em9_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.21
2ep0_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.21
2eop_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.21
2em0_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	99.2
2ytr_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.2
2en8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.2
1yui_A	54	GAGA-factor; complex (DNA-binding protein/DNA), ch	99.2
2ytg_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.19
2en1_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.19
2em2_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.18
2ep3_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.17
2epx_A	47	Zinc finger protein 28 homolog; C2H2, zinc finger	99.16
2ctu_A	73	Zinc finger protein 483; zinc finger domain, struc	99.16
2epr_A	48	POZ-, at HOOK-, and zinc finger-containing protein	99.15
2yrm_A	43	B-cell lymphoma 6 protein; ZF-C2H2, zinc binding,	99.11
2em4_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.11
2em3_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.1
2emj_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.1
2epq_A	45	POZ-, at HOOK-, and zinc finger-containing protein	99.08
2eor_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.08
2ytp_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.08
2ytm_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.08
2ely_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	99.08
2emi_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.07
2eow_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.07
2eom_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.07
2em8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.07
2en9_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.07
2el6_A	46	Zinc finger protein 268; alternative splicing, DNA	99.07
2elz_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	99.07
2emg_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.07
2epu_A	45	Zinc finger protein 32; C2H2, zinc finger domain,	99.07
2eon_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.06
2epz_A	46	Zinc finger protein 28 homolog; C2H2, zinc finger	99.06
2ytf_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.06
2ytt_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.06
1vd4_A	62	Transcription initiation factor IIE, alpha subunit	99.06
2el5_A	42	Zinc finger protein 268; alternative splicing, DNA	99.06
2emm_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.06
2ent_A	48	Krueppel-like factor 15; zinc binding, transcripti	99.06
2ytq_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.05
2enf_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.05
2ep1_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.05
2eoh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.05
2yth_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.05
2eq4_A	46	Zinc finger protein 224; C2H2, zinc finger domain,	99.05
2yte_A	42	Zinc finger protein 473; ZF-C2H2, structural genom	99.05
2emk_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.05
2ep0_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.05
2ytd_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.05
2emp_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.05
2emy_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.04
2emh_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.04
2eov_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.04
2yts_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.04
2em7_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.04
2yti_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.04
1yui_A	54	GAGA-factor; complex (DNA-binding protein/DNA), ch	99.04
2ytr_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.04
2eml_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.04
2yrj_A	46	Zinc finger protein 473; C2H2-type zinc finger, st	99.04
2ene_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.04
2eq2_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.03
2eoz_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.03
2emf_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.03
2eof_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.03
2emz_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.03
2ema_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.03
2em6_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.03
1p7a_A	37	BF3, BKLF, kruppel-like factor 3; classical zinc f	99.03
2en6_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.03
2enh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.03
2ytn_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.03
2eoe_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.03
2yto_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.03
2eq1_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.02
2enc_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.02
2em0_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	99.02
2epc_A	42	Zinc finger protein 32; zinc finger domain, C2H2,	99.02
2ept_A	41	Zinc finger protein 32; C2H2, zinc finger domain,	99.02
2eoo_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.02
2emx_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.02
2eoq_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.02
2ytk_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.02
2em5_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.02
2eou_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	99.02
2yu5_A	44	Zinc finger protein 473; ZF-C2H2 domain, structura	99.02
2emb_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	99.01
2yu8_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.01
2em9_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.01
2eme_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.01
2en2_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	99.01
2eop_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.01
2eq0_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.01
2ytj_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.0
2ysp_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.0
2eoj_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.0
2en7_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.0
2yso_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.0
2ep2_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.0
2epw_A	46	Zinc finger protein 268; C2H2, zinc finger domain,	98.99
2el4_A	46	Zinc finger protein 268; alternative splicing, DNA	98.99
2eos_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	98.99
2eoy_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	98.98
2ytg_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.98
2epx_A	47	Zinc finger protein 28 homolog; C2H2, zinc finger	98.98
2en8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.98
2en3_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.98
2el5_A	42	Zinc finger protein 268; alternative splicing, DNA	98.97
2em2_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.97
2eox_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	98.97
2en1_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.97
2ep3_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.97
2yte_A	42	Zinc finger protein 473; ZF-C2H2, structural genom	98.96
2eq3_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	98.96
2ytb_A	42	Zinc finger protein 32; zinc-finger domain, C2H2,	98.95
2epv_A	44	Zinc finger protein 268; C2H2, zinc finger domain,	98.93
2eos_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	98.92
2ytb_A	42	Zinc finger protein 32; zinc-finger domain, C2H2,	98.92
2epv_A	44	Zinc finger protein 268; C2H2, zinc finger domain,	98.92
2eoj_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	98.91
1x3c_A	73	Zinc finger protein 292; DNA binding, nuclear prot	98.91
2d9k_A	75	FLN29 gene product; zinc finger, ZF-TRAF, structur	98.9
2emj_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.89
2eom_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.89
2em4_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.89
2epu_A	45	Zinc finger protein 32; C2H2, zinc finger domain,	98.89
2en9_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.88
1njq_A	39	Superman protein; zinc-finger, peptide-zinc comple	98.88
2yrm_A	43	B-cell lymphoma 6 protein; ZF-C2H2, zinc binding,	98.87
2eln_A	38	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.87
2em3_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.87
2eon_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.87
2ytp_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.87
2elo_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.86
2emg_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.86
2eor_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.86
2enf_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.86
2eoh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.85
2ent_A	48	Krueppel-like factor 15; zinc binding, transcripti	98.85
2eow_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.84
2emi_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.84
2eln_A	38	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.84
2em6_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.84
2ep1_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.84
2elx_A	35	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.84
2enh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.84
2yti_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.83
1srk_A	35	Zinc finger protein ZFPM1; classical zinc finger,	98.82
2ytf_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	98.82
1rim_A	33	E6APC2 peptide; E6-binding domain, zinc finger, hu	98.82
2eoz_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	98.82
2eq2_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	98.82
2eq1_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	98.82
2eou_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	98.82
2yts_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.81
2yth_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.81
2yrj_A	46	Zinc finger protein 473; C2H2-type zinc finger, st	98.81
2emz_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.81
2eoy_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	98.81
2elm_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.8
2yto_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.79
1vd4_A	62	Transcription initiation factor IIE, alpha subunit	98.79
2eof_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	98.79
1x6f_A	88	Zinc finger protein 462; zinc finger domain, KIAA1	98.78
2yu5_A	44	Zinc finger protein 473; ZF-C2H2 domain, structura	98.77
2en7_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	98.77
2epc_A	42	Zinc finger protein 32; zinc finger domain, C2H2,	98.76
2ept_A	41	Zinc finger protein 32; C2H2, zinc finger domain,	98.75
2en2_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	98.75
2elt_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.75
2eq3_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	98.74
2en3_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.74
2elx_A	35	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.74
2kvf_A	28	Zinc finger and BTB domain-containing protein 32;	98.74
2emb_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	98.73
2elp_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.73
2elv_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.73
2elq_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.73
1srk_A	35	Zinc finger protein ZFPM1; classical zinc finger,	98.72
2eox_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	98.71
2elo_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.71
3iuf_A	48	Zinc finger protein UBI-D4; structural genomics co	98.7
2elr_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.7
1njq_A	39	Superman protein; zinc-finger, peptide-zinc comple	98.7
2d9k_A	75	FLN29 gene product; zinc finger, ZF-TRAF, structur	98.68
2elt_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.68
2els_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.68
2kvh_A	27	Zinc finger and BTB domain-containing protein 32;	98.68
2kvg_A	27	Zinc finger and BTB domain-containing protein 32;	98.67
2epp_A	66	POZ-, at HOOK-, and zinc finger-containing protein	98.67
1fv5_A	36	First zinc finger of U-shaped; CCHC, protein inter	98.66
1rim_A	33	E6APC2 peptide; E6-binding domain, zinc finger, hu	98.66
1znf_A	27	31ST zinc finger from XFIN; zinc finger DNA bindin	98.65
2elq_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.65
2m0d_A	30	Zinc finger and BTB domain-containing protein 17;	98.63
2elv_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.63
2els_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.63
2elr_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.62
2epp_A	66	POZ-, at HOOK-, and zinc finger-containing protein	98.62
1p7a_A	37	BF3, BKLF, kruppel-like factor 3; classical zinc f	98.62
2elp_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.61
1rik_A	29	E6APC1 peptide; E6-binding domain, zinc finger, hu	98.61
1ard_A	29	Yeast transcription factor ADR1; transcription reg	98.6
1bhi_A	38	CRE-BP1, ATF-2; CRE binding protein, transcription	98.6
1klr_A	30	Zinc finger Y-chromosomal protein; transcription;	98.58
1ncs_A	47	Peptide M30F, transcriptional factor SWI5; DNA bin	98.56
2m0e_A	29	Zinc finger and BTB domain-containing protein 17;	98.56
1x3c_A	73	Zinc finger protein 292; DNA binding, nuclear prot	98.55
1zfd_A	32	SWI5; DNA binding motif, zinc finger DNA binding d	98.55
1va1_A	37	Transcription factor SP1; C2H2 type zinc finger, D	98.55
2kvh_A	27	Zinc finger and BTB domain-containing protein 32;	98.54
1klr_A	30	Zinc finger Y-chromosomal protein; transcription;	98.54
2lvu_A	26	Zinc finger and BTB domain-containing protein 17;	97.94
2kvf_A	28	Zinc finger and BTB domain-containing protein 32;	98.53
1rik_A	29	E6APC1 peptide; E6-binding domain, zinc finger, hu	98.53
2m0d_A	30	Zinc finger and BTB domain-containing protein 17;	98.53
2lvt_A	29	Zinc finger and BTB domain-containing protein 17;	97.93
3iuf_A	48	Zinc finger protein UBI-D4; structural genomics co	98.52
1sp2_A	31	SP1F2; zinc finger, transcription activation; NMR	98.52
2elm_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.52
2lvr_A	30	Zinc finger and BTB domain-containing protein 17;	97.91
1va1_A	37	Transcription factor SP1; C2H2 type zinc finger, D	98.51
2m0f_A	29	Zinc finger and BTB domain-containing protein 17;	98.51
2m0f_A	29	Zinc finger and BTB domain-containing protein 17;	98.51
2kvg_A	27	Zinc finger and BTB domain-containing protein 32;	98.51
1ard_A	29	Yeast transcription factor ADR1; transcription reg	98.5
1bhi_A	38	CRE-BP1, ATF-2; CRE binding protein, transcription	98.5
1fv5_A	36	First zinc finger of U-shaped; CCHC, protein inter	98.49
2m0e_A	29	Zinc finger and BTB domain-containing protein 17;	98.47
2kfq_A	32	FP1; protein, de novo protein; NMR {Synthetic}	98.47
1zfd_A	32	SWI5; DNA binding motif, zinc finger DNA binding d	98.44
2kfq_A	32	FP1; protein, de novo protein; NMR {Synthetic}	98.43
1paa_A	30	Yeast transcription factor ADR1; transcription reg	98.41
1sp2_A	31	SP1F2; zinc finger, transcription activation; NMR	98.41
1znf_A	27	31ST zinc finger from XFIN; zinc finger DNA bindin	98.41
2ab3_A	29	ZNF29; zinc finger protein, beta BETA alpha, RREII	98.39
2lvt_A	29	Zinc finger and BTB domain-containing protein 17;	97.73
2lvr_A	30	Zinc finger and BTB domain-containing protein 17;	97.71
2lvu_A	26	Zinc finger and BTB domain-containing protein 17;	97.66
1ncs_A	47	Peptide M30F, transcriptional factor SWI5; DNA bin	98.28
1zw8_A	64	Zinc-responsive transcriptional regulator ZAP1; in	98.26
1x6f_A	88	Zinc finger protein 462; zinc finger domain, KIAA1	98.26
1paa_A	30	Yeast transcription factor ADR1; transcription reg	98.25
2ab3_A	29	ZNF29; zinc finger protein, beta BETA alpha, RREII	98.24
1zw8_A	64	Zinc-responsive transcriptional regulator ZAP1; in	97.97
1zu1_A	127	DSRBP-ZFA, RNA binding protein ZFA; zinc finger pr	97.59
1zr9_A	124	Zinc finger protein 593; DNA binding, structural g	97.4
1zu1_A	127	DSRBP-ZFA, RNA binding protein ZFA; zinc finger pr	97.25
2e72_A	49	POGO transposable element with ZNF domain; zinc fi	96.97
1zr9_A	124	Zinc finger protein 593; DNA binding, structural g	96.85
2e72_A	49	POGO transposable element with ZNF domain; zinc fi	96.84
3mjh_B	34	Early endosome antigen 1; protein-zinc finger comp	96.7
3hcs_A	170	TNF receptor-associated factor 6; cross-brace, bet	96.5
3mjh_B	34	Early endosome antigen 1; protein-zinc finger comp	96.23
2jsp_A	87	Transcriptional regulatory protein ROS; prokaryoti	95.03
2elu_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	94.45
3hcs_A	170	TNF receptor-associated factor 6; cross-brace, bet	94.06
1wjv_A	79	Cell growth regulating nucleolar protein LYAR; DNA	93.64
2k5c_A	95	Uncharacterized protein PF0385; structural genomic	93.42
2elu_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	92.95
2k9h_A	57	Glycoprotein; hantavirus, zinc finger, CCHC, metal	92.82
2djr_A	76	Zinc finger BED domain-containing protein 2; C2H2	92.38
4ayb_P	48	DNA-directed RNA polymerase; transferase, multi-su	91.99
1fu9_A	36	U-shaped transcriptional cofactor; zinc-finger, be	91.89
2gmg_A	105	Hypothetical protein PF0610; winged-helix like pro	91.87
1fu9_A	36	U-shaped transcriptional cofactor; zinc-finger, be	91.85
2jvx_A	28	NF-kappa-B essential modulator; CCHC classical zin	91.83
2ct5_A	73	Zinc finger BED domain containing protein 1; DREF	90.2
2jsp_A	87	Transcriptional regulatory protein ROS; prokaryoti	90.17
2yrk_A	55	Zinc finger homeobox protein 4; structure genomics	87.94
1vq8_Z	83	50S ribosomal protein L37AE; ribosome 50S, protein	87.76
3cc2_Z	116	50S ribosomal protein L37AE, 50S ribosomal protein	87.4
1wir_A	121	Protein arginine N-methyltransferase 3; C2H2 zinc	87.04
3h0g_L	63	DNA-directed RNA polymerases I, II, and III subuni	86.24
3sp4_A	204	Aprataxin-like protein; HIT domain, zinc finger, D	86.21
3jyw_9	72	60S ribosomal protein L43; eukaryotic ribosome, RA	85.35
1wjv_A	79	Cell growth regulating nucleolar protein LYAR; DNA	84.93
1yuz_A	202	Nigerythrin; rubrythrin, rubredoxin, hemerythrin,	84.8
3sp4_A	204	Aprataxin-like protein; HIT domain, zinc finger, D	83.82
1wir_A	121	Protein arginine N-methyltransferase 3; C2H2 zinc	83.3
2i5o_A	39	DNA polymerase ETA; zinc finger, DNA polymerase,PO	83.06
1ffk_W	73	Ribosomal protein L37AE; ribosome assembly, RNA-RN	81.57
2kdx_A	119	HYPA, hydrogenase/urease nickel incorporation prot	80.87
3pwf_A	170	Rubrerythrin; non heme iron peroxidases, oxidative	80.27

>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.96  E-value=1.1e-28  Score=155.34  Aligned_cols=117  Identities=32%  Similarity=0.655  Sum_probs=105.3

Q ss_pred             CCCCccccCccchhccChHHHHHHHHHHhCCCCceeCCCCccccccchHHHhHHHHhcCCCCCCCCccccccccCCCCce
Q psy16578         45 AGEDVFACPKCSKTYLRQYTLNAHLRYECGKRPKFKCPHCNKKCHQKCNLKSHIALKHDQLLAPLAPRSYRRNSQLNGSF  124 (177)
Q Consensus        45 ~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~  124 (177)
                      .+.++|.|.+|++.|.....|..|++.|.+.++ |.|++|++.|.+...|..|+..++.              +.++++|
T Consensus         3 ~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~-~~C~~C~~~f~~~~~l~~H~~~~~~--------------~~~~~~~   67 (124)
T 2dlq_A            3 SGSSGVECPTCHKKFLSKYYLKVHNRKHTGEKP-FECPKCGKCYFRKENLLEHEARNCM--------------NRSEQVF   67 (124)
T ss_dssp             CCCSSCCCTTTCCCCSSHHHHHHHHHHHSSCCS-CBCTTTCCBCSSHHHHHHHHHHCCC--------------CSCCCCE
T ss_pred             CCCCCCCCCCCCCcCCCHHHHHHHHHhCCCCCC-eECCCCCchhcCHHHHHHHHhhhhc--------------CCCCCCe
Confidence            456789999999999999999999999988755 9999999999999999999977542              1256889


Q ss_pred             ecCCccccccChhHHHHHHHHhhCCCCCccCCCCcccccchhHHHHHHhhhcC
Q psy16578        125 ICPKCSNRYVYKHNLKQHLKFECGVEPQFKCPYCDKRCKLKGNLMSHIALKHT  177 (177)
Q Consensus       125 ~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~  177 (177)
                      .|..|++.|.....|..|+++|++ +++|.|.+|++.|.....|.+|++.+|+
T Consensus        68 ~C~~C~~~f~~~~~l~~H~~~h~~-~~~~~C~~C~~~f~~~~~l~~H~~~~H~  119 (124)
T 2dlq_A           68 TCSVCQETFRRRMELRLHMVSHTG-EMPYKCSSCSQQFMQKKDLQSHMIKLHS  119 (124)
T ss_dssp             ECSSSCCEESSHHHHHHHHHHHSS-SCSEECSSSCCEESSHHHHHHHHHHTSS
T ss_pred             ECCCCCCccCCHHHHHHHHHHcCC-CCCccCCCccchhCCHHHHHHHHHHHCC
Confidence            999999999999999999999998 5669999999999999999999997664

>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*

Probab=99.95  E-value=2.1e-27  Score=148.38  Aligned_cols=112  Identities=27%  Similarity=0.645  Sum_probs=103.1

Q ss_pred             CCCCccccCc--cchhccChHHHHHHHHHHhCCCCceeCC--CCccccccchHHHhHHHHhcCCCCCCCCccccccccCC
Q psy16578         45 AGEDVFACPK--CSKTYLRQYTLNAHLRYECGKRPKFKCP--HCNKKCHQKCNLKSHIALKHDQLLAPLAPRSYRRNSQL  120 (177)
Q Consensus        45 ~~~~~~~C~~--C~~~f~~~~~l~~H~~~h~~~~~~~~C~--~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~~~~~~~~~  120 (177)
                      .++++|.|.+  |++.|.....|..|++.|.+..+ |.|.  .|++.|.+...|..|++.+++                 
T Consensus         2 ~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~-~~C~~~~C~~~f~~~~~l~~H~~~h~~-----------------   63 (119)
T 2jp9_A            2 SEKRPFMCAYPGCNKRYFKLSHLQMHSRKHTGEKP-YQCDFKDCERRFSRSDQLKRHQRRHTG-----------------   63 (119)
T ss_dssp             CSSCCBCCCSTTSCCCBSCHHHHHHHHHHHHTTCC-EECCSTTCCCEESSHHHHHHHHHHHHC-----------------
T ss_pred             CCCeeeeCCCCCCcchhCCHHHHHHHHHhhCCCCC-ccCCCCCCcCccCCHHHHHHHHHHcCC-----------------
Confidence            3567899997  99999999999999999998765 9999  799999999999999988774                 


Q ss_pred             CCceecCCccccccChhHHHHHHHHhhCCCCCccC--CCCcccccchhHHHHHHhhh
Q psy16578        121 NGSFICPKCSNRYVYKHNLKQHLKFECGVEPQFKC--PYCDKRCKLKGNLMSHIALK  175 (177)
Q Consensus       121 ~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C--~~C~~~f~~~~~l~~H~~~~  175 (177)
                      +++|.|..|++.|.....|..|+++|++ +++|.|  +.|++.|.+..+|.+|+++|
T Consensus        64 ~~~~~C~~C~~~f~~~~~l~~H~~~h~~-~~~~~C~~~~C~~~f~~~~~L~~H~~~H  119 (119)
T 2jp9_A           64 VKPFQCKTCQRKFSRSDHLKTHTRTHTG-EKPFSCRWPSCQKKFARSDELVRHHNMH  119 (119)
T ss_dssp             CCCEECTTTCCEESCHHHHHHHHHHHHT-CCCEECCSTTCCCEESSHHHHHHHHHTC
T ss_pred             CCCccCCccCchhCCHHHHHHHHHHhcC-CCCeeCCCCCCccccCCHHHHHHHHhcC
Confidence            5789999999999999999999999999 555999  89999999999999999986

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*

Probab=99.95  E-value=1.2e-27  Score=161.23  Aligned_cols=134  Identities=28%  Similarity=0.638  Sum_probs=113.3

Q ss_pred             CCCCCCCccccCccchhccChHHHHHHHHHHhCCCCceeCCCCccccccchHHHhHHHHhcCCC--CCCCCcccccc---
Q psy16578         42 DKPAGEDVFACPKCSKTYLRQYTLNAHLRYECGKRPKFKCPHCNKKCHQKCNLKSHIALKHDQL--LAPLAPRSYRR---  116 (177)
Q Consensus        42 ~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~--~~~~~~~~~~~---  116 (177)
                      ....++++|.|.+|++.|.....|..|++.|.+..+ |.|++|++.|.+...|..|+..+++..  .++.|...+..   
T Consensus        42 ~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~-~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~  120 (190)
T 2i13_A           42 RTHTGEKPYKCPECGKSFSDKKDLTRHQRTHTGEKP-YKCPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAH  120 (190)
T ss_dssp             GCC---CCEECTTTCCEESSHHHHHHHHHHHHCCCC-EECTTTCCEESCHHHHHHHHHHHHTCCCEECTTTCCEESSHHH
T ss_pred             HHcCCCCCccCCCcCchhCCHHHHHHHHHhcCCCCC-ccCcccCCccCCHHHHHHHHHhcCCCCCCcCCCCCCccCCHHH
Confidence            345567789999999999999999999999998765 999999999999999999999988764  44666665542   


Q ss_pred             ------ccCCCCceecCCccccccChhHHHHHHHHhhCCCCCccCCCCcccccchhHHHHHHhhhcC
Q psy16578        117 ------NSQLNGSFICPKCSNRYVYKHNLKQHLKFECGVEPQFKCPYCDKRCKLKGNLMSHIALKHT  177 (177)
Q Consensus       117 ------~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~  177 (177)
                            .+.++++|.|..|++.|.....|..|+++|++ +++|.|++|++.|....+|.+|+++|+|
T Consensus       121 l~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~-~~~~~C~~C~~~f~~~~~L~~H~~~H~~  186 (190)
T 2i13_A          121 LRAHQRTHTGEKPYKCPECGKSFSREDNLHTHQRTHTG-EKPYKCPECGKSFSRRDALNVHQRTHTG  186 (190)
T ss_dssp             HHHHHHHHHCCCCEECTTTCCEESCHHHHHHHHHHHHC-CCCEECTTTCCEESSHHHHHHHHTTC--
T ss_pred             HHHHHHHhCCCCCeECCCCCcccCCHHHHHHHHHhcCC-CCCeECCCCCCccCCHHHHHHHHHhcCC
Confidence                  34567899999999999999999999999999 5569999999999999999999999875

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*

Probab=99.94  E-value=1.3e-26  Score=156.14  Aligned_cols=134  Identities=28%  Similarity=0.625  Sum_probs=100.1

Q ss_pred             CCCCCCCccccCccchhccChHHHHHHHHHHhCCCCceeCCCCccccccchHHHhHHHHhcCCC--CCCCCcccccc---
Q psy16578         42 DKPAGEDVFACPKCSKTYLRQYTLNAHLRYECGKRPKFKCPHCNKKCHQKCNLKSHIALKHDQL--LAPLAPRSYRR---  116 (177)
Q Consensus        42 ~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~--~~~~~~~~~~~---  116 (177)
                      ....++++|.|.+|++.|.....|..|++.|.+..+ |.|+.|++.|.+...|..|+..+++..  .++.|...+..   
T Consensus        14 ~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~-~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~   92 (190)
T 2i13_A           14 ALEPGEKPYACPECGKSFSRSDHLAEHQRTHTGEKP-YKCPECGKSFSDKKDLTRHQRTHTGEKPYKCPECGKSFSQRAN   92 (190)
T ss_dssp             -----------------CCSSHHHHHGGGCC---CC-EECTTTCCEESSHHHHHHHHHHHHCCCCEECTTTCCEESCHHH
T ss_pred             hhcCCCCCCcCCCCccccCCHHHHHHHHHHcCCCCC-ccCCCcCchhCCHHHHHHHHHhcCCCCCccCcccCCccCCHHH
Confidence            344567789999999999999999999999988755 999999999999999999999998764  44666665542   


Q ss_pred             ------ccCCCCceecCCccccccChhHHHHHHHHhhCCCCCccCCCCcccccchhHHHHHHhhhcC
Q psy16578        117 ------NSQLNGSFICPKCSNRYVYKHNLKQHLKFECGVEPQFKCPYCDKRCKLKGNLMSHIALKHT  177 (177)
Q Consensus       117 ------~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~  177 (177)
                            .+.++++|.|..|++.|.+...|..|+++|++ +++|.|++|++.|.+...|.+|+++|++
T Consensus        93 l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~-~~~~~C~~C~~~f~~~~~L~~H~~~H~~  158 (190)
T 2i13_A           93 LRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQRTHTG-EKPYKCPECGKSFSREDNLHTHQRTHTG  158 (190)
T ss_dssp             HHHHHHHHHTCCCEECTTTCCEESSHHHHHHHHHHHHC-CCCEECTTTCCEESCHHHHHHHHHHHHC
T ss_pred             HHHHHHhcCCCCCCcCCCCCCccCCHHHHHHHHHHhCC-CCCeECCCCCcccCCHHHHHHHHHhcCC
Confidence                  34567899999999999999999999999999 5559999999999999999999999875

>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*

Probab=99.94  E-value=2e-26  Score=145.01  Aligned_cols=111  Identities=28%  Similarity=0.620  Sum_probs=98.6

Q ss_pred             CCccccC--ccchhccChHHHHHHHHHHhCCCCceeCCCCccccccchHHHhHHHHhcCCCCCCCCccccccccCCCCce
Q psy16578         47 EDVFACP--KCSKTYLRQYTLNAHLRYECGKRPKFKCPHCNKKCHQKCNLKSHIALKHDQLLAPLAPRSYRRNSQLNGSF  124 (177)
Q Consensus        47 ~~~~~C~--~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~  124 (177)
                      .++|.|.  .|++.|.+..+|..|++.| +. .+|.|.+|++.|.+...|..|+..+++                 +++|
T Consensus         3 ~~~~~C~~~~C~~~f~~~~~l~~H~~~h-~~-~~~~C~~C~~~f~~~~~l~~H~~~h~~-----------------~~~~   63 (124)
T 1ubd_C            3 PRTIACPHKGCTKMFRDNSAMRKHLHTH-GP-RVHVCAECGKAFVESSKLKRHQLVHTG-----------------EKPF   63 (124)
T ss_dssp             --CEECCSTTCCCEESSHHHHHHHHGGG-SC-CCEECTTTCCEESSHHHHHHHGGGTSC-----------------CCCE
T ss_pred             CCcccCCCCCCcCccCCHHHHHHHHHHc-CC-CCeECCCCCchhCCHHHHHHHHHHcCC-----------------CCCe
Confidence            4569999  8999999999999999998 44 459999999999999999999977654                 5889


Q ss_pred             ecCC--ccccccChhHHHHHHHHhhCCCCCccCC--CCcccccchhHHHHHHhhhcC
Q psy16578        125 ICPK--CSNRYVYKHNLKQHLKFECGVEPQFKCP--YCDKRCKLKGNLMSHIALKHT  177 (177)
Q Consensus       125 ~C~~--C~~~f~~~~~l~~H~~~h~~~~~~~~C~--~C~~~f~~~~~l~~H~~~~h~  177 (177)
                      .|..  |++.|.....|..|+++|++ +++|.|+  .|++.|.+.++|.+|+++|++
T Consensus        64 ~C~~~~C~~~f~~~~~l~~H~~~h~~-~~~~~C~~~~C~~~f~~~~~L~~H~~~H~~  119 (124)
T 1ubd_C           64 QCTFEGCGKRFSLDFNLRTHVRIHTG-DRPYVCPFDGCNKKFAQSTNLKSHILTHAK  119 (124)
T ss_dssp             ECCSTTCCCEESCHHHHHHHHHHHHC-CCCCCCCSTTCCCCCSSTTTTHHHHHHHC-
T ss_pred             eCCCCCCcCccCCHHHHHHHHHHhCC-CCceECCCCCCCCccCCHHHHHHHHHHHcc
Confidence            9986  99999999999999999999 5559996  599999999999999999875

>2lt7_A Transcriptional regulator kaiso; zinc finger, double helix, metal binding protein-DNA complex; HET: DNA; NMR {Homo sapiens} PDB: 4f6m_A* 4f6n_A*

Probab=99.93  E-value=2.5e-26  Score=145.80  Aligned_cols=108  Identities=14%  Similarity=0.289  Sum_probs=95.9

Q ss_pred             CCCCCCCccccCccchhccChHHHHHHHHHHhCCCCceeCCCCccccccchHHHhHHHHhcCCCCCCCCccccccccCCC
Q psy16578         42 DKPAGEDVFACPKCSKTYLRQYTLNAHLRYECGKRPKFKCPHCNKKCHQKCNLKSHIALKHDQLLAPLAPRSYRRNSQLN  121 (177)
Q Consensus        42 ~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~~~~~~~~~~  121 (177)
                      ...+|+++|.|.+|++.|....+|..|++.|.+.++ |.|.+|++.|.....|..|+..|.+                 +
T Consensus        15 ~~h~Gek~y~C~~C~k~F~~~~~L~~H~~~H~~~k~-~~C~~C~k~F~~~~~L~~H~~~H~~-----------------~   76 (133)
T 2lt7_A           15 LIVDGRVYYICIVCKRSYVCLTSLRRHFNIHSWEKK-YPCRYCEKVFPLAEYRTKHEIHHTG-----------------E   76 (133)
T ss_dssp             EEETTEEEEEETTTCCEESCHHHHHHHHHHHHCCSC-EECSSSSCEESSHHHHHHHHHHHHT-----------------C
T ss_pred             eecCCCcCeECCCCCCCcCCHHHHHHHHHHcCCCCC-eeCCccCeecccccchhhhccccCC-----------------C
Confidence            345688899999999999999999999999998755 9999999999999999999987764                 6


Q ss_pred             CceecCCccccccChhHHHHHHHHhhCCC-----CCccCCCCcccccchhH
Q psy16578        122 GSFICPKCSNRYVYKHNLKQHLKFECGVE-----PQFKCPYCDKRCKLKGN  167 (177)
Q Consensus       122 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~~-----~~~~C~~C~~~f~~~~~  167 (177)
                      ++|.|..|++.|.....|..|+++|++++     ++|.|.+|++.|.....
T Consensus        77 k~~~C~~C~k~F~~~~~L~~H~~~hh~~~p~~~~k~~~C~~C~k~~~~~~~  127 (133)
T 2lt7_A           77 RRYQCLACGKSFINYQFMSSHIKSVHSQDPSGDSKLYRLHPCRSLQIRQYA  127 (133)
T ss_dssp             CCEEESSSCCEESSHHHHHHHHHHHTCCCTTSSSCCEEECCCCSSCCCCCH
T ss_pred             ccccCCCCCCCcCCHHHHHHHhHHhcCCCCCCCCCCeecCCCCchhhhccc
Confidence            89999999999999999999999998753     45999999998876543

>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens}

Probab=99.93  E-value=4.1e-26  Score=148.92  Aligned_cols=115  Identities=26%  Similarity=0.500  Sum_probs=102.9

Q ss_pred             CCCCccccCccchhccChHHHHHHHHHHhCCCCc--------eeCCCCccccccchHHHhHHHHhcCCCCCCCCcccccc
Q psy16578         45 AGEDVFACPKCSKTYLRQYTLNAHLRYECGKRPK--------FKCPHCNKKCHQKCNLKSHIALKHDQLLAPLAPRSYRR  116 (177)
Q Consensus        45 ~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~--------~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~~~~~  116 (177)
                      .....|.|.+|++.|....+|..|++.++...++        |.|.+|++.|.+...|..|++.|++             
T Consensus        21 ~~~~~~~C~~C~~~f~~~~~L~~H~~~~H~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~-------------   87 (155)
T 2rpc_A           21 EAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHTG-------------   87 (155)
T ss_dssp             TTCCSSSCCCCCCCBSSHHHHHHHHHTTTSCCTTCSSCCCCBTTCTTSSCCCSSHHHHHHHTHHHHC-------------
T ss_pred             hhhcccccccCCcccCCHHHHHHHHHhhcCCCcccCCccccccCCCCcccccCCHHHHHHHHHhcCC-------------
Confidence            3456799999999999999999999985544443        7899999999999999999988764             


Q ss_pred             ccCCCCceecCC--ccccccChhHHHHHHHHhhCCCCCccCCC--CcccccchhHHHHHHhhhcC
Q psy16578        117 NSQLNGSFICPK--CSNRYVYKHNLKQHLKFECGVEPQFKCPY--CDKRCKLKGNLMSHIALKHT  177 (177)
Q Consensus       117 ~~~~~~~~~C~~--C~~~f~~~~~l~~H~~~h~~~~~~~~C~~--C~~~f~~~~~l~~H~~~~h~  177 (177)
                          +++|.|..  |++.|.....|..|+++|++ +++|.|.+  |++.|....+|.+|+++|++
T Consensus        88 ----~~~~~C~~~~C~~~f~~~~~L~~H~~~h~~-~~~~~C~~~~C~k~f~~~~~L~~H~~~H~~  147 (155)
T 2rpc_A           88 ----EKPFPCPFPGCGKIFARSENLKIHKRTHTG-EKPFKCEFEGCDRRFANSSDRKKHMHVHTS  147 (155)
T ss_dssp             ----CCSEECSCTTTCCEESCHHHHHHHHTTTCS-SCSBCCSSTTCCCCBSSHHHHHHSSTTTTS
T ss_pred             ----CCcccCCcCCCCCccCCHHHHHHHHHhhCC-CCCccCCCCCCCCccCCHHHHHHHHHHhcC
Confidence                57899998  99999999999999999998 55699997  99999999999999999875

>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A

Probab=99.93  E-value=2.6e-25  Score=149.71  Aligned_cols=131  Identities=23%  Similarity=0.455  Sum_probs=90.3

Q ss_pred             CCCCcccc--CccchhccChHHHHHHHHHHhCCCCceeC--CCCccccccchHHHhHHHHhcCCCC--CC--CCccccc-
Q psy16578         45 AGEDVFAC--PKCSKTYLRQYTLNAHLRYECGKRPKFKC--PHCNKKCHQKCNLKSHIALKHDQLL--AP--LAPRSYR-  115 (177)
Q Consensus        45 ~~~~~~~C--~~C~~~f~~~~~l~~H~~~h~~~~~~~~C--~~C~~~f~~~~~l~~H~~~~~~~~~--~~--~~~~~~~-  115 (177)
                      ...++|.|  ..|++.|.....|..|++.|.+..+ |.|  ..|++.|.+...|..|++.+++..+  ++  .|...+. 
T Consensus         8 ~~~~~~~C~~~~C~~~f~~~~~L~~H~~~h~~~~~-~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~   86 (190)
T 1tf6_A            8 VVYKRYICSFADCGAAYNKNWKLQAHLCKHTGEKP-FPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDSDGCDLRFTT   86 (190)
T ss_dssp             --CCCCBCSSTTTCCBCSSHHHHHHHHHHHHCCCS-SCCSSTTCCCCCSSHHHHHHHHTTTTTCCCEECCSSSCCCEESC
T ss_pred             CCCcceeCCCCCCcchhCCHHHHHHHHHhcCCCCC-ccCCCCCCChhhCCHHHHHHHHHHccCCCceeCCCCCCCCccCC
Confidence            34455677  4677777777777777777766544 777  6677777777777777766665432  23  4444433 


Q ss_pred             ---------ccc-CCCCceec--CCccccccChhHHHHHHHHhhCCCCCccCCC--CcccccchhHHHHHHhhhcC
Q psy16578        116 ---------RNS-QLNGSFIC--PKCSNRYVYKHNLKQHLKFECGVEPQFKCPY--CDKRCKLKGNLMSHIALKHT  177 (177)
Q Consensus       116 ---------~~~-~~~~~~~C--~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~--C~~~f~~~~~l~~H~~~~h~  177 (177)
                               ..+ .++++|.|  ..|++.|.+...|..|+++|++ +++|.|++  |++.|.+.++|.+|+++|+|
T Consensus        87 ~~~l~~H~~~~h~~~~~~~~C~~~~C~k~f~~~~~L~~H~~~H~~-~~~~~C~~~~C~k~F~~~~~L~~H~~~H~~  161 (190)
T 1tf6_A           87 KANMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQLKVHQFSHTQ-QLPYECPHEGCDKRFSLPSRLKRHEKVHAG  161 (190)
T ss_dssp             HHHHHHHHHTTSSTTTSCCEECSSSSCEECSSHHHHHHHHGGGSS-SCSSBCCSSSCCCBCSSHHHHHHHHTSSCS
T ss_pred             HHHHHHHHHHhcCCCcceeeCCCCCCccccCCHHHHHHHHHHhCC-CCCccCCCCCCCchhcCHHHHHHHHHHhCC
Confidence                     122 35677888  7788888888888888888887 55588877  88888888888888888764

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.92  E-value=2.3e-25  Score=145.24  Aligned_cols=113  Identities=26%  Similarity=0.537  Sum_probs=95.8

Q ss_pred             CCCccccCc-----cchhccChHHHHHHHHHHhCCCCceeCCC--CccccccchHHHhHHHHhcCCCCCCCCcccccccc
Q psy16578         46 GEDVFACPK-----CSKTYLRQYTLNAHLRYECGKRPKFKCPH--CNKKCHQKCNLKSHIALKHDQLLAPLAPRSYRRNS  118 (177)
Q Consensus        46 ~~~~~~C~~-----C~~~f~~~~~l~~H~~~h~~~~~~~~C~~--C~~~f~~~~~l~~H~~~~~~~~~~~~~~~~~~~~~  118 (177)
                      +.++|.|.+     |++.|.....|..|++.|.+..+ |.|++  |++.|.+...|..|++.++                
T Consensus        31 ~~~~~~C~~c~C~~c~~~f~~~~~l~~H~~~h~~~~~-~~C~~~~C~~~f~~~~~l~~H~~~h~----------------   93 (155)
T 2gli_A           31 ERKEFVCHWGGCSRELRPFKAQYMLVVHMRRHTGEKP-HKCTFEGCRKSYSRLENLKTHLRSHT----------------   93 (155)
T ss_dssp             CSSCCCCCBTTCTTTTCCCSSHHHHHHHTHHHHCCCC-CCCCSTTCCCCCSSHHHHHHHHHHTT----------------
T ss_pred             CCcceeCCCCCccchhhhhhhHHHHHHHHHhcCCCCC-ccCCCCCCCCcccCHHHHHHHHHHcC----------------
Confidence            345566654     34888888888888888887755 88875  8888888888888887765                


Q ss_pred             CCCCceecCC--ccccccChhHHHHHH-HHhhCCCCCccCCC--CcccccchhHHHHHHhhhcC
Q psy16578        119 QLNGSFICPK--CSNRYVYKHNLKQHL-KFECGVEPQFKCPY--CDKRCKLKGNLMSHIALKHT  177 (177)
Q Consensus       119 ~~~~~~~C~~--C~~~f~~~~~l~~H~-~~h~~~~~~~~C~~--C~~~f~~~~~l~~H~~~~h~  177 (177)
                       ++++|.|..  |++.|.+...|..|+ +.|.+ +++|.|.+  |++.|.+.++|.+|+++|||
T Consensus        94 -~~~~~~C~~~~C~~~f~~~~~L~~H~~~~H~~-~~~~~C~~~~C~~~f~~~~~L~~H~~~hhg  155 (155)
T 2gli_A           94 -GEKPYMCEHEGCSKAFSNASDRAKHQNRTHSN-EKPYVCKLPGCTKRYTDPSSLRKHVKTVHG  155 (155)
T ss_dssp             -TCCCEECCSTTCCCEESSSSTTHHHHHHTTCS-CCCEECCSTTTCCEESSHHHHHHHHHHSCC
T ss_pred             -CCCCeeCCCCCCCCccCCHHHHHHHHHHhcCC-CCCeeCCCCCCccccCCHHHHHHHHHhhcC
Confidence             468899998  999999999999999 67877 66699999  99999999999999999997

>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A

Probab=99.91  E-value=5.9e-24  Score=143.07  Aligned_cols=101  Identities=19%  Similarity=0.394  Sum_probs=83.3

Q ss_pred             CceeC--CCCccccccchHHHhHHHHhcCCCC--C--CCCccccc---------cccCCCCceecC--CccccccChhHH
Q psy16578         77 PKFKC--PHCNKKCHQKCNLKSHIALKHDQLL--A--PLAPRSYR---------RNSQLNGSFICP--KCSNRYVYKHNL  139 (177)
Q Consensus        77 ~~~~C--~~C~~~f~~~~~l~~H~~~~~~~~~--~--~~~~~~~~---------~~~~~~~~~~C~--~C~~~f~~~~~l  139 (177)
                      ++|.|  +.|++.|.+...|..|++.+++..+  +  +.|...+.         ..+.++++|.|.  .|++.|.+...|
T Consensus        11 ~~~~C~~~~C~~~f~~~~~L~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l   90 (190)
T 1tf6_A           11 KRYICSFADCGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDSDGCDLRFTTKANM   90 (190)
T ss_dssp             CCCBCSSTTTCCBCSSHHHHHHHHHHHHCCCSSCCSSTTCCCCCSSHHHHHHHHTTTTTCCCEECCSSSCCCEESCHHHH
T ss_pred             cceeCCCCCCcchhCCHHHHHHHHHhcCCCCCccCCCCCCChhhCCHHHHHHHHHHccCCCceeCCCCCCCCccCCHHHH
Confidence            45999  7899999999999999999887653  3  44665554         355677899999  899999999999


Q ss_pred             HHHHH-HhhCCCCCccC--CCCcccccchhHHHHHHhhhcC
Q psy16578        140 KQHLK-FECGVEPQFKC--PYCDKRCKLKGNLMSHIALKHT  177 (177)
Q Consensus       140 ~~H~~-~h~~~~~~~~C--~~C~~~f~~~~~l~~H~~~~h~  177 (177)
                      ..|+. .|...+.+|.|  .+|++.|.+..+|.+|+++|++
T Consensus        91 ~~H~~~~h~~~~~~~~C~~~~C~k~f~~~~~L~~H~~~H~~  131 (190)
T 1tf6_A           91 KKHFNRFHNIKICVYVCHFENCGKAFKKHNQLKVHQFSHTQ  131 (190)
T ss_dssp             HHHHHTTSSTTTSCCEECSSSSCEECSSHHHHHHHHGGGSS
T ss_pred             HHHHHHhcCCCcceeeCCCCCCccccCCHHHHHHHHHHhCC
Confidence            99994 55344667999  8899999999999999998874

>2lt7_A Transcriptional regulator kaiso; zinc finger, double helix, metal binding protein-DNA complex; HET: DNA; NMR {Homo sapiens} PDB: 4f6m_A* 4f6n_A*

Probab=99.90  E-value=8.9e-25  Score=138.65  Aligned_cols=89  Identities=19%  Similarity=0.355  Sum_probs=80.4

Q ss_pred             HHHhCCCCceeCCCCccccccchHHHhHHHHhcCCCCCCCCccccccccCCCCceecCCccccccChhHHHHHHHHhhCC
Q psy16578         70 RYECGKRPKFKCPHCNKKCHQKCNLKSHIALKHDQLLAPLAPRSYRRNSQLNGSFICPKCSNRYVYKHNLKQHLKFECGV  149 (177)
Q Consensus        70 ~~h~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~  149 (177)
                      .+|.|+ ++|.|.+|++.|.....|..|++.|.+                 +++|.|..|++.|.....|..|+++|++ 
T Consensus        15 ~~h~Ge-k~y~C~~C~k~F~~~~~L~~H~~~H~~-----------------~k~~~C~~C~k~F~~~~~L~~H~~~H~~-   75 (133)
T 2lt7_A           15 LIVDGR-VYYICIVCKRSYVCLTSLRRHFNIHSW-----------------EKKYPCRYCEKVFPLAEYRTKHEIHHTG-   75 (133)
T ss_dssp             EEETTE-EEEEETTTCCEESCHHHHHHHHHHHHC-----------------CSCEECSSSSCEESSHHHHHHHHHHHHT-
T ss_pred             eecCCC-cCeECCCCCCCcCCHHHHHHHHHHcCC-----------------CCCeeCCccCeecccccchhhhccccCC-
Confidence            345554 559999999999999999999987764                 6899999999999999999999999999 


Q ss_pred             CCCccCCCCcccccchhHHHHHHhhhcC
Q psy16578        150 EPQFKCPYCDKRCKLKGNLMSHIALKHT  177 (177)
Q Consensus       150 ~~~~~C~~C~~~f~~~~~l~~H~~~~h~  177 (177)
                      +++|.|++|++.|...++|.+|+++||+
T Consensus        76 ~k~~~C~~C~k~F~~~~~L~~H~~~hh~  103 (133)
T 2lt7_A           76 ERRYQCLACGKSFINYQFMSSHIKSVHS  103 (133)
T ss_dssp             CCCEEESSSCCEESSHHHHHHHHHHHTC
T ss_pred             CccccCCCCCCCcCCHHHHHHHhHHhcC
Confidence            5669999999999999999999999985

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.89  E-value=3.4e-23  Score=134.97  Aligned_cols=110  Identities=21%  Similarity=0.343  Sum_probs=95.9

Q ss_pred             CccccCccchhccChHHHHHHHHH---HhCCCCceeCCCC-----ccccccchHHHhHHHHhcCCCCCCCCccccccccC
Q psy16578         48 DVFACPKCSKTYLRQYTLNAHLRY---ECGKRPKFKCPHC-----NKKCHQKCNLKSHIALKHDQLLAPLAPRSYRRNSQ  119 (177)
Q Consensus        48 ~~~~C~~C~~~f~~~~~l~~H~~~---h~~~~~~~~C~~C-----~~~f~~~~~l~~H~~~~~~~~~~~~~~~~~~~~~~  119 (177)
                      .+|.|..|++.|.+..+|..|++.   |.+. ++|.|.+|     ++.|.+...|..|+..+++                
T Consensus         2 ~~~~C~~C~~~f~~~~~L~~H~~~~h~h~~~-~~~~C~~c~C~~c~~~f~~~~~l~~H~~~h~~----------------   64 (155)
T 2gli_A            2 TDCRWDGCSQEFDSQEQLVHHINSEHIHGER-KEFVCHWGGCSRELRPFKAQYMLVVHMRRHTG----------------   64 (155)
T ss_dssp             CBCCBTTCCCBCSCHHHHHHHHHHHTSSSCS-SCCCCCBTTCTTTTCCCSSHHHHHHHTHHHHC----------------
T ss_pred             CcCCcCCCccccCCHHHHHHHHHhhccCCCC-cceeCCCCCccchhhhhhhHHHHHHHHHhcCC----------------
Confidence            468999999999999999999984   4444 45988753     4899999999999988775                


Q ss_pred             CCCceecCC--ccccccChhHHHHHHHHhhCCCCCccCCC--CcccccchhHHHHHH-hhhc
Q psy16578        120 LNGSFICPK--CSNRYVYKHNLKQHLKFECGVEPQFKCPY--CDKRCKLKGNLMSHI-ALKH  176 (177)
Q Consensus       120 ~~~~~~C~~--C~~~f~~~~~l~~H~~~h~~~~~~~~C~~--C~~~f~~~~~l~~H~-~~~h  176 (177)
                       +++|.|..  |++.|.+...|..|+++|++ +++|.|++  |++.|.+.++|.+|+ ++|.
T Consensus        65 -~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~-~~~~~C~~~~C~~~f~~~~~L~~H~~~~H~  124 (155)
T 2gli_A           65 -EKPHKCTFEGCRKSYSRLENLKTHLRSHTG-EKPYMCEHEGCSKAFSNASDRAKHQNRTHS  124 (155)
T ss_dssp             -CCCCCCCSTTCCCCCSSHHHHHHHHHHTTT-CCCEECCSTTCCCEESSSSTTHHHHHHTTC
T ss_pred             -CCCccCCCCCCCCcccCHHHHHHHHHHcCC-CCCeeCCCCCCCCccCCHHHHHHHHHHhcC
Confidence             57899985  99999999999999999998 55699999  999999999999999 5654

>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus}

Probab=99.88  E-value=1.1e-22  Score=118.74  Aligned_cols=82  Identities=27%  Similarity=0.600  Sum_probs=75.8

Q ss_pred             ceeCCCCccccccchHHHhHHHHhcCCCCCCCCccccccccCCCCceecCCccccccChhHHHHHHHHhhCCCCCccCCC
Q psy16578         78 KFKCPHCNKKCHQKCNLKSHIALKHDQLLAPLAPRSYRRNSQLNGSFICPKCSNRYVYKHNLKQHLKFECGVEPQFKCPY  157 (177)
Q Consensus        78 ~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~  157 (177)
                      ||.|.+|++.|.....|..|++.+++                 +++|.|..|++.|.....|..|++.|++ +++|.|.+
T Consensus         1 ~~~C~~C~~~f~~~~~l~~H~~~h~~-----------------~~~~~C~~C~~~f~~~~~l~~H~~~h~~-~~~~~C~~   62 (82)
T 2kmk_A            1 SFDCKICGKSFKRSSTLSTHLLIHSD-----------------TRPYPCQYCGKRFHQKSDMKKHTFIHTG-EKPHKCQV   62 (82)
T ss_dssp             CEECSSSCCEESSHHHHHHHHHHHHT-----------------CCCEECSSSCCEESSHHHHHHHHHHHHT-CCCEECTT
T ss_pred             CccCCCCcccccCchhHHHHHHHcCC-----------------CCCeeCCcCChhhCCHHHHHHHHHHhcC-CCCCcCCC
Confidence            59999999999999999999988764                 5789999999999999999999999999 55699999


Q ss_pred             CcccccchhHHHHHHhhhcC
Q psy16578        158 CDKRCKLKGNLMSHIALKHT  177 (177)
Q Consensus       158 C~~~f~~~~~l~~H~~~~h~  177 (177)
                      |++.|.+.++|.+|+++|+|
T Consensus        63 C~~~f~~~~~l~~H~~~H~g   82 (82)
T 2kmk_A           63 CGKAFSQSSNLITHSRKHTG   82 (82)
T ss_dssp             TSCEESSHHHHHHHHHHHC-
T ss_pred             cchhhCChHHHHHHHHhhCC
Confidence            99999999999999999986

>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.87  E-value=3.8e-22  Score=119.80  Aligned_cols=88  Identities=25%  Similarity=0.574  Sum_probs=59.8

Q ss_pred             CCCCccccCccchhccChHHHHHHHHHHhCCCCceeCCCCccccccchHHHhHHHHhcCCCCCCCCccccccccCCCCce
Q psy16578         45 AGEDVFACPKCSKTYLRQYTLNAHLRYECGKRPKFKCPHCNKKCHQKCNLKSHIALKHDQLLAPLAPRSYRRNSQLNGSF  124 (177)
Q Consensus        45 ~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~  124 (177)
                      .++++|.|.+|++.|.....|..|++.|.+.++ |.|.+|++.|.....|..|+..+++                 +++|
T Consensus         4 ~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~-~~C~~C~~~f~~~~~l~~H~~~h~~-----------------~~~~   65 (96)
T 2dmd_A            4 GSSGPHKCEVCGKCFSRKDKLKTHMRCHTGVKP-YKCKTCDYAAADSSSLNKHLRIHSD-----------------ERPF   65 (96)
T ss_dssp             CCCCCCCBTTTTBCCCCHHHHHHHGGGCCCCCS-EECSSSCCEESSHHHHHHHHHHSCC-----------------CCCE
T ss_pred             CCCcCeECCCCCCccCCHHHHHHHHHhcCCCCC-EeCCCCCCccCCHHHHHHHHHHhCC-----------------CCCc
Confidence            345567777777777777777777777666544 7777777777777777777755543                 4567


Q ss_pred             ecCCccccccChhHHHHHHHHhhCCC
Q psy16578        125 ICPKCSNRYVYKHNLKQHLKFECGVE  150 (177)
Q Consensus       125 ~C~~C~~~f~~~~~l~~H~~~h~~~~  150 (177)
                      .|..|++.|.....|..|+++|+++.
T Consensus        66 ~C~~C~~~f~~~~~l~~H~~~h~~~~   91 (96)
T 2dmd_A           66 KCQICPYASRNSSQLTVHLRSHTGDS   91 (96)
T ss_dssp             ECSSSSCEESSHHHHHHHHTTCCSCC
T ss_pred             cCCCCCCccCCHHHHHHHHHHhcCCC
Confidence            77777777777777777777776643

>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1

Probab=99.86  E-value=2e-21  Score=118.78  Aligned_cols=93  Identities=20%  Similarity=0.509  Sum_probs=80.8

Q ss_pred             CCCCCccccCccchhccChHHHHHHHHHHhCCCCceeCCCCccccccchHHHhHHHHhcCCCCCCCCccccccccCCCCc
Q psy16578         44 PAGEDVFACPKCSKTYLRQYTLNAHLRYECGKRPKFKCPHCNKKCHQKCNLKSHIALKHDQLLAPLAPRSYRRNSQLNGS  123 (177)
Q Consensus        44 ~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~~~~~~~~~~~~  123 (177)
                      ...+++|.|.+|++.|.....|..|++.|.+..+ |.|.+|++.|.....|..|++.+++                 +++
T Consensus        12 ~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~-~~C~~C~~~f~~~~~l~~H~~~h~~-----------------~~~   73 (106)
T 2ee8_A           12 SKTKKEFICKFCGRHFTKSYNLLIHERTHTDERP-YTCDICHKAFRRQDHLRDHRYIHSK-----------------EKP   73 (106)
T ss_dssp             CCCCCCCBCSSSCCBCSSHHHHHHHHHHHCCSCC-CBCSSSCCBCSCHHHHHHHGGGSCC-----------------CCT
T ss_pred             cCCCcCeECCCCCCccCCHHHHHHHHHHcCCCCC-cCCCCccchhCCHHHHHHHHHHhCC-----------------CCC
Confidence            4556779999999999999999999999988755 9999999999999999999876653                 578


Q ss_pred             eecCCccccccChhHHHHHHHHhhCCCCCccC
Q psy16578        124 FICPKCSNRYVYKHNLKQHLKFECGVEPQFKC  155 (177)
Q Consensus       124 ~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C  155 (177)
                      |.|..|++.|.....|..|+++|++ +++|.+
T Consensus        74 ~~C~~C~~~f~~~~~L~~H~~~H~~-~~~~~~  104 (106)
T 2ee8_A           74 FKCQECGKGFCQSRTLAVHKTLHMQ-TSSPTA  104 (106)
T ss_dssp             TSCSSSCCCCSSHHHHHHHHHHTTS-CCCCCC
T ss_pred             eECCCcCCcccCHHHHHHHHHHhCC-CCCCcC
Confidence            9999999999999999999999988 444654

>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C

Probab=99.86  E-value=1.4e-21  Score=115.87  Aligned_cols=82  Identities=22%  Similarity=0.587  Sum_probs=52.0

Q ss_pred             ceeCC--CCccccccchHHHhHHHHhcCCCCCCCCccccccccCCCCceecCCccccccChhHHHHHHHHhhCCCCCccC
Q psy16578         78 KFKCP--HCNKKCHQKCNLKSHIALKHDQLLAPLAPRSYRRNSQLNGSFICPKCSNRYVYKHNLKQHLKFECGVEPQFKC  155 (177)
Q Consensus        78 ~~~C~--~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C  155 (177)
                      +|.|+  .|++.|.....|..|++.+++                 +++|.|..|++.|.....|..|+++|++ +++|.|
T Consensus         4 ~~~C~~~~C~~~f~~~~~l~~H~~~h~~-----------------~~~~~C~~C~~~f~~~~~l~~H~~~h~~-~~~~~C   65 (90)
T 1a1h_A            4 PYACPVESCDRRFSQSGSLTRHIRIHTG-----------------QKPFQCRICMRNFSRSDHLTTHIRTHTG-EKPFAC   65 (90)
T ss_dssp             CEECCSSSCCCEESSHHHHHHHHHHHHC-----------------CCCEECTTTCCEESCHHHHHHHHHHHHC-CCCEEC
T ss_pred             ceECCCCCCCCccCCHHHHHHHHHHhCC-----------------CCCccCCCCCcccCCHHHHHHHHHHcCC-CCCccC
Confidence            36665  466666666666666655543                 3556666666666666666666666666 344666


Q ss_pred             CCCcccccchhHHHHHHhhhcC
Q psy16578        156 PYCDKRCKLKGNLMSHIALKHT  177 (177)
Q Consensus       156 ~~C~~~f~~~~~l~~H~~~~h~  177 (177)
                      .+|++.|.+.+.|.+|+++|++
T Consensus        66 ~~C~~~f~~~~~l~~H~~~H~~   87 (90)
T 1a1h_A           66 DICGRKFARSDERKRHTKIHLR   87 (90)
T ss_dssp             TTTCCEESSHHHHHHHHGGGGC
T ss_pred             CCCCchhCCHHHHHHHHHHhcc
Confidence            6666666666666666666654

>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1

Probab=99.86  E-value=1.9e-21  Score=118.82  Aligned_cols=84  Identities=24%  Similarity=0.491  Sum_probs=77.4

Q ss_pred             CCceeCCCCccccccchHHHhHHHHhcCCCCCCCCccccccccCCCCceecCCccccccChhHHHHHHHHhhCCCCCccC
Q psy16578         76 RPKFKCPHCNKKCHQKCNLKSHIALKHDQLLAPLAPRSYRRNSQLNGSFICPKCSNRYVYKHNLKQHLKFECGVEPQFKC  155 (177)
Q Consensus        76 ~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C  155 (177)
                      +++|.|.+|++.|.....|..|+..+++                 +++|.|..|++.|.....|..|+++|++ +++|.|
T Consensus        15 ~~~~~C~~C~~~f~~~~~l~~H~~~h~~-----------------~~~~~C~~C~~~f~~~~~l~~H~~~h~~-~~~~~C   76 (106)
T 2ee8_A           15 KKEFICKFCGRHFTKSYNLLIHERTHTD-----------------ERPYTCDICHKAFRRQDHLRDHRYIHSK-EKPFKC   76 (106)
T ss_dssp             CCCCBCSSSCCBCSSHHHHHHHHHHHCC-----------------SCCCBCSSSCCBCSCHHHHHHHGGGSCC-CCTTSC
T ss_pred             CcCeECCCCCCccCCHHHHHHHHHHcCC-----------------CCCcCCCCccchhCCHHHHHHHHHHhCC-CCCeEC
Confidence            3469999999999999999999988764                 5789999999999999999999999998 556999


Q ss_pred             CCCcccccchhHHHHHHhhhcC
Q psy16578        156 PYCDKRCKLKGNLMSHIALKHT  177 (177)
Q Consensus       156 ~~C~~~f~~~~~l~~H~~~~h~  177 (177)
                      .+|++.|.....|.+|+++|++
T Consensus        77 ~~C~~~f~~~~~L~~H~~~H~~   98 (106)
T 2ee8_A           77 QECGKGFCQSRTLAVHKTLHMQ   98 (106)
T ss_dssp             SSSCCCCSSHHHHHHHHHHTTS
T ss_pred             CCcCCcccCHHHHHHHHHHhCC
Confidence            9999999999999999999875

>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.85  E-value=4.3e-21  Score=114.95  Aligned_cols=80  Identities=23%  Similarity=0.460  Sum_probs=49.9

Q ss_pred             ceeCCCCccccccchHHHhHHHHhcCCCCCCCCccccccccCCCCceecCCccccccChhHHHHHHHHhhCC-CCCccCC
Q psy16578         78 KFKCPHCNKKCHQKCNLKSHIALKHDQLLAPLAPRSYRRNSQLNGSFICPKCSNRYVYKHNLKQHLKFECGV-EPQFKCP  156 (177)
Q Consensus        78 ~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~-~~~~~C~  156 (177)
                      +|.|.+|++.|.+...|..|+..+++                 +++|.|..|++.|.....|..|++.|++. +++|.|.
T Consensus         7 ~~~C~~C~~~f~~~~~l~~H~~~h~~-----------------~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~C~   69 (95)
T 2yt9_A            7 GVACEICGKIFRDVYHLNRHKLSHSG-----------------EKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQ   69 (95)
T ss_dssp             CEECSSSCCEESSSHHHHHHHHHSCS-----------------SCSEECSSSCCEESCHHHHHHHHHHHCCCCCSSBCCS
T ss_pred             CeECCCCCCccCChHHHHHHHHhcCC-----------------CCCCcCCCCCCccCCHHHHHHHHHHhcCCCCCceECC
Confidence            36666666666666666666654432                 35566666666666666666666666653 2456666


Q ss_pred             CCcccccchhHHHHHHhh
Q psy16578        157 YCDKRCKLKGNLMSHIAL  174 (177)
Q Consensus       157 ~C~~~f~~~~~l~~H~~~  174 (177)
                      +|++.|....+|.+|++.
T Consensus        70 ~C~~~f~~~~~L~~H~~~   87 (95)
T 2yt9_A           70 SCGKGFSRPDHLNGHIKQ   87 (95)
T ss_dssp             SSCCCBSSHHHHHHHHHH
T ss_pred             CccchhCCHHHHHHHHHH
Confidence            666666666666666653

>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.85  E-value=2.6e-21  Score=116.17  Aligned_cols=85  Identities=24%  Similarity=0.458  Sum_probs=77.5

Q ss_pred             CCCceeCCCCccccccchHHHhHHHHhcCCCCCCCCccccccccCCCCceecCCccccccChhHHHHHHHHhhCCCCCcc
Q psy16578         75 KRPKFKCPHCNKKCHQKCNLKSHIALKHDQLLAPLAPRSYRRNSQLNGSFICPKCSNRYVYKHNLKQHLKFECGVEPQFK  154 (177)
Q Consensus        75 ~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~  154 (177)
                      ...+|.|.+|++.|.+...|..|++.+++                 +++|.|..|++.|.....|..|+++|++ +++|.
T Consensus         5 ~~~~~~C~~C~~~f~~~~~l~~H~~~h~~-----------------~~~~~C~~C~~~f~~~~~l~~H~~~h~~-~~~~~   66 (96)
T 2dmd_A            5 SSGPHKCEVCGKCFSRKDKLKTHMRCHTG-----------------VKPYKCKTCDYAAADSSSLNKHLRIHSD-ERPFK   66 (96)
T ss_dssp             CCCCCCBTTTTBCCCCHHHHHHHGGGCCC-----------------CCSEECSSSCCEESSHHHHHHHHHHSCC-CCCEE
T ss_pred             CCcCeECCCCCCccCCHHHHHHHHHhcCC-----------------CCCEeCCCCCCccCCHHHHHHHHHHhCC-CCCcc
Confidence            34569999999999999999999976653                 5789999999999999999999999988 56699


Q ss_pred             CCCCcccccchhHHHHHHhhhcC
Q psy16578        155 CPYCDKRCKLKGNLMSHIALKHT  177 (177)
Q Consensus       155 C~~C~~~f~~~~~l~~H~~~~h~  177 (177)
                      |.+|++.|.....|.+|+++|++
T Consensus        67 C~~C~~~f~~~~~l~~H~~~h~~   89 (96)
T 2dmd_A           67 CQICPYASRNSSQLTVHLRSHTG   89 (96)
T ss_dssp             CSSSSCEESSHHHHHHHHTTCCS
T ss_pred             CCCCCCccCCHHHHHHHHHHhcC
Confidence            99999999999999999999985

>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.85  E-value=2.9e-23  Score=128.86  Aligned_cols=97  Identities=16%  Similarity=0.225  Sum_probs=68.9

Q ss_pred             HHHHHHHHHHhCCCCceeCCCCccccccchHHHhHHHHhcCCCCCCCCccccccccCCCCc-eecCCccccc--cChhHH
Q psy16578         63 YTLNAHLRYECGKRPKFKCPHCNKKCHQKCNLKSHIALKHDQLLAPLAPRSYRRNSQLNGS-FICPKCSNRY--VYKHNL  139 (177)
Q Consensus        63 ~~l~~H~~~h~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~~~~~~~~~~~~-~~C~~C~~~f--~~~~~l  139 (177)
                      ..|..|++.|.+.++ |.|.+|++.|.....|..|++. ++.              ...++ +.|..|++.|  .....|
T Consensus         5 ~~l~~H~~~H~~~~~-~~C~~C~k~f~~~~~L~~H~~~-~~h--------------~~~~~~~~C~~C~~~f~f~~~~~l   68 (115)
T 2dmi_A            5 SSGKLYGSIFTGASK-FRCKDCSAAYDTLVELTVHMNE-TGH--------------YRDDNHETDNNNPKRWSKPRKRSL   68 (115)
T ss_dssp             CCCCCCCCCCCCCCS-EEBSSSSCEESSHHHHHHHHHH-TCC--------------CBCSCCCCCCCCCSCCSSCCCCCC
T ss_pred             hhhhhheeeeCCCCC-EECCccCchhcCHHHHHHHHHH-hCc--------------cccCCCccCCCCCcccccccHHHH
Confidence            356667777766644 8888888888888888888765 210              12233 3488888777  777788


Q ss_pred             HHHHHHhhCCCCCccCCCCcccccchhHHHHHHhhhc
Q psy16578        140 KQHLKFECGVEPQFKCPYCDKRCKLKGNLMSHIALKH  176 (177)
Q Consensus       140 ~~H~~~h~~~~~~~~C~~C~~~f~~~~~l~~H~~~~h  176 (177)
                      ..|+++|++ +++|.|.+|++.|....+|.+|+++||
T Consensus        69 ~~H~~~H~~-~~~~~C~~C~k~f~~~~~L~~H~~~hh  104 (115)
T 2dmi_A           69 LEMEGKEDA-QKVLKCMYCGHSFESLQDLSVHMIKTK  104 (115)
T ss_dssp             CCCCCSCCC-CSSCBCSSSCCBCSSHHHHHHHHHHTT
T ss_pred             HHHhhccCC-CcceECCCCCCccCCHHHHHHHHHHhC
Confidence            888888777 555888888888888888888887776

>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus}

Probab=99.84  E-value=6.7e-21  Score=110.99  Aligned_cols=82  Identities=30%  Similarity=0.650  Sum_probs=75.9

Q ss_pred             ccccCccchhccChHHHHHHHHHHhCCCCceeCCCCccccccchHHHhHHHHhcCCCCCCCCccccccccCCCCceecCC
Q psy16578         49 VFACPKCSKTYLRQYTLNAHLRYECGKRPKFKCPHCNKKCHQKCNLKSHIALKHDQLLAPLAPRSYRRNSQLNGSFICPK  128 (177)
Q Consensus        49 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~  128 (177)
                      +|.|.+|++.|.....|..|++.|.+.++ |.|..|++.|.....|..|+..+++                 +++|.|..
T Consensus         1 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~-~~C~~C~~~f~~~~~l~~H~~~h~~-----------------~~~~~C~~   62 (82)
T 2kmk_A            1 SFDCKICGKSFKRSSTLSTHLLIHSDTRP-YPCQYCGKRFHQKSDMKKHTFIHTG-----------------EKPHKCQV   62 (82)
T ss_dssp             CEECSSSCCEESSHHHHHHHHHHHHTCCC-EECSSSCCEESSHHHHHHHHHHHHT-----------------CCCEECTT
T ss_pred             CccCCCCcccccCchhHHHHHHHcCCCCC-eeCCcCChhhCCHHHHHHHHHHhcC-----------------CCCCcCCC
Confidence            48999999999999999999999998765 9999999999999999999988775                 57899999


Q ss_pred             ccccccChhHHHHHHHHhhC
Q psy16578        129 CSNRYVYKHNLKQHLKFECG  148 (177)
Q Consensus       129 C~~~f~~~~~l~~H~~~h~~  148 (177)
                      |++.|.....|..|+++|+|
T Consensus        63 C~~~f~~~~~l~~H~~~H~g   82 (82)
T 2kmk_A           63 CGKAFSQSSNLITHSRKHTG   82 (82)
T ss_dssp             TSCEESSHHHHHHHHHHHC-
T ss_pred             cchhhCChHHHHHHHHhhCC
Confidence            99999999999999999975

>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.84  E-value=4e-21  Score=118.18  Aligned_cols=84  Identities=23%  Similarity=0.664  Sum_probs=47.3

Q ss_pred             CCCCccccCccchhccChHHHHHHHHHHhCCCCceeCCCCccccccchHHHhHHHHhcCCCCCCCCccccccccCCCCce
Q psy16578         45 AGEDVFACPKCSKTYLRQYTLNAHLRYECGKRPKFKCPHCNKKCHQKCNLKSHIALKHDQLLAPLAPRSYRRNSQLNGSF  124 (177)
Q Consensus        45 ~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~  124 (177)
                      .++++|.| .|++.|.....|..|++.|.+.++ |.|.+|++.|.....|..|++.+++                 +++|
T Consensus         6 ~~~k~~~C-~C~~~f~~~~~l~~H~~~h~~~~~-~~C~~C~~~f~~~~~l~~H~~~h~~-----------------~~~~   66 (110)
T 2csh_A            6 SGDKLYPC-QCGKSFTHKSQRDRHMSMHLGLRP-YGCGVCGKKFKMKHHLVGHMKIHTG-----------------IKPY   66 (110)
T ss_dssp             CCCCCEEC-TTSCEESSHHHHHHHHHHHSCCCS-EECTTTSCEESSSHHHHHHHTTTCC-----------------CCCE
T ss_pred             CCCCCEec-cCCCccCCHHHHHHHHHHcCCCcC-ccCCCCCcccCCHHHHHHHHHHcCC-----------------CCCe
Confidence            44455666 566666666666666665555433 5666666666555556555544432                 3455


Q ss_pred             ecCCccccccChhHHHHHHHHhh
Q psy16578        125 ICPKCSNRYVYKHNLKQHLKFEC  147 (177)
Q Consensus       125 ~C~~C~~~f~~~~~l~~H~~~h~  147 (177)
                      .|..|++.|.....|..|+++|+
T Consensus        67 ~C~~C~~~f~~~~~l~~H~~~~~   89 (110)
T 2csh_A           67 ECNICAKRFMWRDSFHRHVTSCT   89 (110)
T ss_dssp             ECSSSCCEESCHHHHHHHHHHHH
T ss_pred             eCCCCcchhcCHHHHHHHHHHcc
Confidence            55555555555555555555554

>4gzn_C ZFP-57, zinc finger protein 57; transcription-DNA complex; HET: DNA 5CM; 0.99A {Mus musculus}

Probab=99.84  E-value=3e-21  Score=105.14  Aligned_cols=56  Identities=21%  Similarity=0.482  Sum_probs=53.4

Q ss_pred             CCceecCCccccccChhHHHHHHHHhhCCCCCccCCCCcccccchhHHHHHHhhhcC
Q psy16578        121 NGSFICPKCSNRYVYKHNLKQHLKFECGVEPQFKCPYCDKRCKLKGNLMSHIALKHT  177 (177)
Q Consensus       121 ~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~  177 (177)
                      |+||.|..|++.|.....|..|+++|++ +++|.|.+|++.|...++|.+|+++|.|
T Consensus         2 EKpy~C~~C~k~F~~~~~L~~H~~~Ht~-ekp~~C~~C~k~F~~~~~L~~H~~~Htg   57 (60)
T 4gzn_C            2 ERPFFCNFCGKTYRDASGLSRHRRAHLG-YRPRSCPECGKCFRDQSEVNRHLKVHQN   57 (60)
T ss_dssp             CCCEECTTTCCEESSHHHHHHHHHHHHT-CCCEECTTTCCEESSHHHHHHHGGGGSC
T ss_pred             CCCccCCCCCCEeCCHHHHHHHHHHhCC-CcCeECCCCCCCcCCHHHHHHHhCccCC
Confidence            6899999999999999999999999999 6669999999999999999999999975

>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C

Probab=99.84  E-value=1.4e-20  Score=111.64  Aligned_cols=85  Identities=26%  Similarity=0.647  Sum_probs=77.6

Q ss_pred             CCccccC--ccchhccChHHHHHHHHHHhCCCCceeCCCCccccccchHHHhHHHHhcCCCCCCCCccccccccCCCCce
Q psy16578         47 EDVFACP--KCSKTYLRQYTLNAHLRYECGKRPKFKCPHCNKKCHQKCNLKSHIALKHDQLLAPLAPRSYRRNSQLNGSF  124 (177)
Q Consensus        47 ~~~~~C~--~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~  124 (177)
                      +++|.|.  .|++.|.....|..|++.|.+..+ |.|..|++.|.+...|..|+..+++                 +++|
T Consensus         2 ~k~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~-~~C~~C~~~f~~~~~l~~H~~~h~~-----------------~~~~   63 (90)
T 1a1h_A            2 ERPYACPVESCDRRFSQSGSLTRHIRIHTGQKP-FQCRICMRNFSRSDHLTTHIRTHTG-----------------EKPF   63 (90)
T ss_dssp             -CCEECCSSSCCCEESSHHHHHHHHHHHHCCCC-EECTTTCCEESCHHHHHHHHHHHHC-----------------CCCE
T ss_pred             CCceECCCCCCCCccCCHHHHHHHHHHhCCCCC-ccCCCCCcccCCHHHHHHHHHHcCC-----------------CCCc
Confidence            5679998  599999999999999999998866 9999999999999999999988775                 5789


Q ss_pred             ecCCccccccChhHHHHHHHHhhCC
Q psy16578        125 ICPKCSNRYVYKHNLKQHLKFECGV  149 (177)
Q Consensus       125 ~C~~C~~~f~~~~~l~~H~~~h~~~  149 (177)
                      .|..|++.|.....|..|+++|+++
T Consensus        64 ~C~~C~~~f~~~~~l~~H~~~H~~~   88 (90)
T 1a1h_A           64 ACDICGRKFARSDERKRHTKIHLRQ   88 (90)
T ss_dssp             ECTTTCCEESSHHHHHHHHGGGGC-
T ss_pred             cCCCCCchhCCHHHHHHHHHHhccc
Confidence            9999999999999999999999884

>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.83  E-value=5e-20  Score=110.29  Aligned_cols=89  Identities=26%  Similarity=0.640  Sum_probs=79.2

Q ss_pred             CCCCCccccCccchhccChHHHHHHHHHHhCCCCceeCCCCccccccchHHHhHHHHhcCCCCCCCCccccccccCCCCc
Q psy16578         44 PAGEDVFACPKCSKTYLRQYTLNAHLRYECGKRPKFKCPHCNKKCHQKCNLKSHIALKHDQLLAPLAPRSYRRNSQLNGS  123 (177)
Q Consensus        44 ~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~~~~~~~~~~~~  123 (177)
                      ..++++|.|.+|++.|.....|..|++.|.+..+ |.|.+|++.|.....|..|++.+++.               .+++
T Consensus         2 s~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~-~~C~~C~~~f~~~~~l~~H~~~h~~~---------------~~~~   65 (95)
T 2yt9_A            2 SSGSSGVACEICGKIFRDVYHLNRHKLSHSGEKP-YSCPVCGLRFKRKDRMSYHVRSHDGS---------------VGKP   65 (95)
T ss_dssp             CCCCSCEECSSSCCEESSSHHHHHHHHHSCSSCS-EECSSSCCEESCHHHHHHHHHHHCCC---------------CCSS
T ss_pred             CCCCCCeECCCCCCccCChHHHHHHHHhcCCCCC-CcCCCCCCccCCHHHHHHHHHHhcCC---------------CCCc
Confidence            3567789999999999999999999999887755 99999999999999999999888762               2478


Q ss_pred             eecCCccccccChhHHHHHHH-HhhC
Q psy16578        124 FICPKCSNRYVYKHNLKQHLK-FECG  148 (177)
Q Consensus       124 ~~C~~C~~~f~~~~~l~~H~~-~h~~  148 (177)
                      |.|..|++.|.....|..|++ .|.+
T Consensus        66 ~~C~~C~~~f~~~~~L~~H~~~~H~~   91 (95)
T 2yt9_A           66 YICQSCGKGFSRPDHLNGHIKQVHSG   91 (95)
T ss_dssp             BCCSSSCCCBSSHHHHHHHHHHTSCC
T ss_pred             eECCCccchhCCHHHHHHHHHHhcCC
Confidence            999999999999999999997 5654

>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid binding, KIAA1227 protein, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.83  E-value=3e-20  Score=113.70  Aligned_cols=94  Identities=14%  Similarity=0.248  Sum_probs=81.1

Q ss_pred             CCCCCCCCccccCccchhccChHHHHHHHHHHhCCCCceeCCCCccccccchHHHhHHHHhcCCCCCCCCccccccccCC
Q psy16578         41 EDKPAGEDVFACPKCSKTYLRQYTLNAHLRYECGKRPKFKCPHCNKKCHQKCNLKSHIALKHDQLLAPLAPRSYRRNSQL  120 (177)
Q Consensus        41 ~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~~~~~~~~~  120 (177)
                      .....++++|.|.+|++.|.....|..|++.|.   ++|.|.+|++.|.....|..|+. |.                 +
T Consensus         8 ~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~H~---~~~~C~~C~~~f~~~~~l~~H~~-H~-----------------~   66 (107)
T 1wjp_A            8 ASPVENKEVYQCRLCNAKLSSLLEQGSHERLCR---NAAVCPYCSLRFFSPELKQEHES-KC-----------------E   66 (107)
T ss_dssp             CCCCCCCCCCBCTTTCCBCSSHHHHHHHHHHHH---HSBCCTTTCCCBSSHHHHHHHHH-HC-----------------S
T ss_pred             CcccCCCcCeECCCCCCccCCHHHHHHHHHHCC---CCccCCCCCCccCCHHHHHHHHH-cC-----------------C
Confidence            344567788999999999999999999999985   35999999999999999999994 44                 4


Q ss_pred             CCceecCCccccccChhHHHHHHH-HhhCCCCCccCC
Q psy16578        121 NGSFICPKCSNRYVYKHNLKQHLK-FECGVEPQFKCP  156 (177)
Q Consensus       121 ~~~~~C~~C~~~f~~~~~l~~H~~-~h~~~~~~~~C~  156 (177)
                      +++|.|..|++.|.....|..|++ .|.+ +++|.|.
T Consensus        67 ~~~~~C~~C~~~f~~~~~L~~H~~~~H~~-~~~~~~~  102 (107)
T 1wjp_A           67 YKKLTCLECMRTFKSSFSIWRHQVEVHNQ-NNMAPTS  102 (107)
T ss_dssp             TGGGEEGGGTEECSSHHHHHHHHHHTSCC-CCCCCCC
T ss_pred             CCCccCccccchhCCHHHHHHHHHHHcCC-CCCCCCC
Confidence            688999999999999999999998 5655 6768775

>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens}

Probab=99.82  E-value=7.3e-20  Score=110.55  Aligned_cols=55  Identities=20%  Similarity=0.539  Sum_probs=32.0

Q ss_pred             CceecC--CccccccChhHHHHHHHHhhCCCCCccCCCCcccccchhHHHHHHhhhcC
Q psy16578        122 GSFICP--KCSNRYVYKHNLKQHLKFECGVEPQFKCPYCDKRCKLKGNLMSHIALKHT  177 (177)
Q Consensus       122 ~~~~C~--~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~  177 (177)
                      ++|.|.  .|++.|.....|..|+++|++ +++|.|.+|++.|....+|.+|+++|++
T Consensus        44 ~~~~C~~~~C~~~f~~~~~l~~H~~~h~~-~~~~~C~~C~~~f~~~~~l~~H~~~H~~  100 (100)
T 2ebt_A           44 KPYKCTWEGCDWRFARSDELTRHYRKHTG-AKPFQCGVCNRSFSRSDHLALHMKRHQN  100 (100)
T ss_dssp             CCEECCSSSCCCEESSHHHHHHHHHHHTS-CCSCBCSSSCCBCSSHHHHHHHHHHHCC
T ss_pred             CCeeCCCCCCCCccCCHHHHHHHHHHhCC-CCCeECCCCcCccCCHHHHHHHHHHhCC
Confidence            445553  355566666666666666655 3346666666666666666666666553

>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.81  E-value=8.7e-20  Score=112.15  Aligned_cols=85  Identities=22%  Similarity=0.562  Sum_probs=77.0

Q ss_pred             HhCCCCceeCCCCccccccchHHHhHHHHhcCCCCCCCCccccccccCCCCceecCCccccccChhHHHHHHHHhhCCCC
Q psy16578         72 ECGKRPKFKCPHCNKKCHQKCNLKSHIALKHDQLLAPLAPRSYRRNSQLNGSFICPKCSNRYVYKHNLKQHLKFECGVEP  151 (177)
Q Consensus        72 h~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~  151 (177)
                      |.+. ++|.| .|++.|.....|..|++.+++                 +++|.|..|++.|.....|..|+++|++ ++
T Consensus         5 h~~~-k~~~C-~C~~~f~~~~~l~~H~~~h~~-----------------~~~~~C~~C~~~f~~~~~l~~H~~~h~~-~~   64 (110)
T 2csh_A            5 SSGD-KLYPC-QCGKSFTHKSQRDRHMSMHLG-----------------LRPYGCGVCGKKFKMKHHLVGHMKIHTG-IK   64 (110)
T ss_dssp             CCCC-CCEEC-TTSCEESSHHHHHHHHHHHSC-----------------CCSEECTTTSCEESSSHHHHHHHTTTCC-CC
T ss_pred             CCCC-CCEec-cCCCccCCHHHHHHHHHHcCC-----------------CcCccCCCCCcccCCHHHHHHHHHHcCC-CC
Confidence            4444 45999 999999999999999987764                 5789999999999999999999999999 55


Q ss_pred             CccCCCCcccccchhHHHHHHhhhc
Q psy16578        152 QFKCPYCDKRCKLKGNLMSHIALKH  176 (177)
Q Consensus       152 ~~~C~~C~~~f~~~~~l~~H~~~~h  176 (177)
                      +|.|.+|++.|.....|.+|++.||
T Consensus        65 ~~~C~~C~~~f~~~~~l~~H~~~~~   89 (110)
T 2csh_A           65 PYECNICAKRFMWRDSFHRHVTSCT   89 (110)
T ss_dssp             CEECSSSCCEESCHHHHHHHHHHHH
T ss_pred             CeeCCCCcchhcCHHHHHHHHHHcc
Confidence            5999999999999999999999886

>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid binding, KIAA1227 protein, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.81  E-value=1.1e-20  Score=115.66  Aligned_cols=86  Identities=23%  Similarity=0.379  Sum_probs=74.8

Q ss_pred             HHHHhCCCCceeCCCCccccccchHHHhHHHHhcCCCCCCCCccccccccCCCCceecCCccccccChhHHHHHHHHhhC
Q psy16578         69 LRYECGKRPKFKCPHCNKKCHQKCNLKSHIALKHDQLLAPLAPRSYRRNSQLNGSFICPKCSNRYVYKHNLKQHLKFECG  148 (177)
Q Consensus        69 ~~~h~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~  148 (177)
                      ++.|.+. ++|.|.+|++.|.....|..|++.|.                   ++|.|..|++.|.....|..|++ |++
T Consensus         8 ~~~h~~~-~~~~C~~C~~~f~~~~~l~~H~~~H~-------------------~~~~C~~C~~~f~~~~~l~~H~~-H~~   66 (107)
T 1wjp_A            8 ASPVENK-EVYQCRLCNAKLSSLLEQGSHERLCR-------------------NAAVCPYCSLRFFSPELKQEHES-KCE   66 (107)
T ss_dssp             CCCCCCC-CCCBCTTTCCBCSSHHHHHHHHHHHH-------------------HSBCCTTTCCCBSSHHHHHHHHH-HCS
T ss_pred             CcccCCC-cCeECCCCCCccCCHHHHHHHHHHCC-------------------CCccCCCCCCccCCHHHHHHHHH-cCC
Confidence            3455555 45999999999999999999997752                   47999999999999999999995 777


Q ss_pred             CCCCccCCCCcccccchhHHHHHHhhhc
Q psy16578        149 VEPQFKCPYCDKRCKLKGNLMSHIALKH  176 (177)
Q Consensus       149 ~~~~~~C~~C~~~f~~~~~l~~H~~~~h  176 (177)
                       +++|.|.+|++.|....+|.+|++.+|
T Consensus        67 -~~~~~C~~C~~~f~~~~~L~~H~~~~H   93 (107)
T 1wjp_A           67 -YKKLTCLECMRTFKSSFSIWRHQVEVH   93 (107)
T ss_dssp             -TGGGEEGGGTEECSSHHHHHHHHHHTS
T ss_pred             -CCCccCccccchhCCHHHHHHHHHHHc
Confidence             666999999999999999999998444

>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens}

Probab=99.80  E-value=3.7e-19  Score=107.42  Aligned_cols=90  Identities=24%  Similarity=0.521  Sum_probs=79.5

Q ss_pred             CCCCCCCCccccCc--cchhccChHHHHHHHHHHhCCCCceeCC--CCccccccchHHHhHHHHhcCCCCCCCCcccccc
Q psy16578         41 EDKPAGEDVFACPK--CSKTYLRQYTLNAHLRYECGKRPKFKCP--HCNKKCHQKCNLKSHIALKHDQLLAPLAPRSYRR  116 (177)
Q Consensus        41 ~~~~~~~~~~~C~~--C~~~f~~~~~l~~H~~~h~~~~~~~~C~--~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~~~~~  116 (177)
                      .......++|.|.+  |++.|.....|..|++.|.+.++ |.|.  .|++.|.....|..|++.+++             
T Consensus         7 ~~~~~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~-~~C~~~~C~~~f~~~~~l~~H~~~h~~-------------   72 (100)
T 2ebt_A            7 GPDLEKRRIHYCDYPGCTKVYTKSSHLKAHLRTHTGEKP-YKCTWEGCDWRFARSDELTRHYRKHTG-------------   72 (100)
T ss_dssp             CCCCCSCCCEECCSSSCCCEESCHHHHHHHHHHHSCCCC-EECCSSSCCCEESSHHHHHHHHHHHTS-------------
T ss_pred             CcccccCcceEcCCCCCCCcccCHHHHHHHHHHhCCCCC-eeCCCCCCCCccCCHHHHHHHHHHhCC-------------
Confidence            33445567799997  99999999999999999988755 9996  699999999999999987764             


Q ss_pred             ccCCCCceecCCccccccChhHHHHHHHHhhC
Q psy16578        117 NSQLNGSFICPKCSNRYVYKHNLKQHLKFECG  148 (177)
Q Consensus       117 ~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~  148 (177)
                          +++|.|..|++.|.....|..|+++|++
T Consensus        73 ----~~~~~C~~C~~~f~~~~~l~~H~~~H~~  100 (100)
T 2ebt_A           73 ----AKPFQCGVCNRSFSRSDHLALHMKRHQN  100 (100)
T ss_dssp             ----CCSCBCSSSCCBCSSHHHHHHHHHHHCC
T ss_pred             ----CCCeECCCCcCccCCHHHHHHHHHHhCC
Confidence                5789999999999999999999999964

>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A

Probab=99.80  E-value=5.8e-21  Score=112.85  Aligned_cols=82  Identities=16%  Similarity=0.291  Sum_probs=72.7

Q ss_pred             CceeCCCCccccccchHHHhHHHHhcCCCCCCCCccccccccCCCCceecCCccccccChhHHHHHHHHhhCCCCCccCC
Q psy16578         77 PKFKCPHCNKKCHQKCNLKSHIALKHDQLLAPLAPRSYRRNSQLNGSFICPKCSNRYVYKHNLKQHLKFECGVEPQFKCP  156 (177)
Q Consensus        77 ~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~  156 (177)
                      +||.|.+|++.|.....|..|++.|++                 +++|.|..|++.|.....|..|+++|++ . +|.|.
T Consensus         2 k~~~C~~C~k~f~~~~~L~~H~~~H~~-----------------~~~~~C~~C~k~f~~~~~L~~H~~~h~~-~-~~~c~   62 (88)
T 1llm_C            2 KPFQCRICMRNFSRSDHLTTHIRTHTG-----------------EKPFACDICGRKFARSDERKRHRDIQHI-L-PILED   62 (88)
T ss_dssp             CCEECTTTCCEESCHHHHHHHHHHHHC-----------------CCCEECTTTCCEESSHHHHHHHHHHHTH-H-HHHHH
T ss_pred             CCCcCCCCCCccCCHHHHHHHHHHcCC-----------------CCCccCCCCCCccCCHHHHHHHHHHhCC-C-cchHH
Confidence            459999999999999999999987764                 5789999999999999999999999985 4 49999


Q ss_pred             CCcccccchhHHHHHHhhhcC
Q psy16578        157 YCDKRCKLKGNLMSHIALKHT  177 (177)
Q Consensus       157 ~C~~~f~~~~~l~~H~~~~h~  177 (177)
                      .|++.|....+|..|++.+|+
T Consensus        63 ~C~~~f~~~~~L~~H~~~~h~   83 (88)
T 1llm_C           63 KVEELLSKNYHLENEVARLKK   83 (88)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhhHHHHHHHHH
Confidence            999999999999999998763

>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*

Probab=99.80  E-value=1.4e-19  Score=112.59  Aligned_cols=84  Identities=23%  Similarity=0.539  Sum_probs=76.6

Q ss_pred             CCceeCCC--CccccccchHHHhHHHHhcCCCCCCCCccccccccCCCCceecC--CccccccChhHHHHHHHHhhCCCC
Q psy16578         76 RPKFKCPH--CNKKCHQKCNLKSHIALKHDQLLAPLAPRSYRRNSQLNGSFICP--KCSNRYVYKHNLKQHLKFECGVEP  151 (177)
Q Consensus        76 ~~~~~C~~--C~~~f~~~~~l~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~--~C~~~f~~~~~l~~H~~~h~~~~~  151 (177)
                      +++|.|.+  |++.|.+...|..|++.+++                 +++|.|.  .|++.|.+...|..|+++|++ ++
T Consensus         4 ~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~-----------------~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~-~~   65 (119)
T 2jp9_A            4 KRPFMCAYPGCNKRYFKLSHLQMHSRKHTG-----------------EKPYQCDFKDCERRFSRSDQLKRHQRRHTG-VK   65 (119)
T ss_dssp             SCCBCCCSTTSCCCBSCHHHHHHHHHHHHT-----------------TCCEECCSTTCCCEESSHHHHHHHHHHHHC-CC
T ss_pred             CeeeeCCCCCCcchhCCHHHHHHHHHhhCC-----------------CCCccCCCCCCcCccCCHHHHHHHHHHcCC-CC
Confidence            35699997  99999999999999987764                 5789999  799999999999999999998 55


Q ss_pred             CccCCCCcccccchhHHHHHHhhhcC
Q psy16578        152 QFKCPYCDKRCKLKGNLMSHIALKHT  177 (177)
Q Consensus       152 ~~~C~~C~~~f~~~~~l~~H~~~~h~  177 (177)
                      +|.|.+|++.|.+...|.+|+++|++
T Consensus        66 ~~~C~~C~~~f~~~~~l~~H~~~h~~   91 (119)
T 2jp9_A           66 PFQCKTCQRKFSRSDHLKTHTRTHTG   91 (119)
T ss_dssp             CEECTTTCCEESCHHHHHHHHHHHHT
T ss_pred             CccCCccCchhCCHHHHHHHHHHhcC
Confidence            69999999999999999999999874

>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A

Probab=99.80  E-value=1.4e-19  Score=107.00  Aligned_cols=81  Identities=21%  Similarity=0.515  Sum_probs=73.6

Q ss_pred             CceeCCC--CccccccchHHHhHHHHhcCCCCCCCCccccccccCCCCceecC--CccccccChhHHHHHHHHhhCCCCC
Q psy16578         77 PKFKCPH--CNKKCHQKCNLKSHIALKHDQLLAPLAPRSYRRNSQLNGSFICP--KCSNRYVYKHNLKQHLKFECGVEPQ  152 (177)
Q Consensus        77 ~~~~C~~--C~~~f~~~~~l~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~--~C~~~f~~~~~l~~H~~~h~~~~~~  152 (177)
                      .+|.|..  |++.|.+...|..|++.++                 ++++|.|.  .|++.|.....|..|+++|++ +++
T Consensus         4 ~~~~C~~~~C~~~f~~~~~l~~H~~~h~-----------------~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~-~~~   65 (89)
T 2wbs_A            4 ATHTCDYAGCGKTYTKSSHLKAHLRTHT-----------------GEKPYHCDWDGCGWKFARSDELTRHYRKHTG-HRP   65 (89)
T ss_dssp             CCEECCSTTTCCEESSHHHHHHHHTTSC-----------------SSCCEECCSTTTCCEESSHHHHHHHHHHHHC-CCC
T ss_pred             CCeeCCCCCCCCcCCCHHHHHHHHHhcC-----------------CCCCcCCCCCCCCCccCCHHHHHHHHHHcCC-CCC
Confidence            3599999  9999999999999997655                 45789997  599999999999999999999 556


Q ss_pred             ccCCCCcccccchhHHHHHHhhh
Q psy16578        153 FKCPYCDKRCKLKGNLMSHIALK  175 (177)
Q Consensus       153 ~~C~~C~~~f~~~~~l~~H~~~~  175 (177)
                      |.|.+|++.|...++|..|+++|
T Consensus        66 ~~C~~C~~~f~~~~~l~~H~~~H   88 (89)
T 2wbs_A           66 FQCQKCDRAFSRSDHLALHMKRH   88 (89)
T ss_dssp             EECSSSSCEESSHHHHHHHGGGG
T ss_pred             ccCCCCCcccCCHHHHHHHHHhh
Confidence            99999999999999999999987

>2j7j_A Transcription factor IIIA; zinc finger module, alternative initiation, nuclear protein, phosphorylation, hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B 2hgh_A

Probab=99.80  E-value=1.8e-19  Score=105.57  Aligned_cols=78  Identities=27%  Similarity=0.541  Sum_probs=73.2

Q ss_pred             ceeC--CCCccccccchHHHhHHHHhcCCCCCCCCccccccccCCCCceecCC--ccccccChhHHHHHHHHhhCCCCCc
Q psy16578         78 KFKC--PHCNKKCHQKCNLKSHIALKHDQLLAPLAPRSYRRNSQLNGSFICPK--CSNRYVYKHNLKQHLKFECGVEPQF  153 (177)
Q Consensus        78 ~~~C--~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~--C~~~f~~~~~l~~H~~~h~~~~~~~  153 (177)
                      ||.|  ..|++.|.....|..|++.+.+                 +++|.|..  |++.|.....|..|+++|++    |
T Consensus         1 p~~C~~~~C~~~f~~~~~l~~H~~~h~~-----------------~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~----~   59 (85)
T 2j7j_A            1 MYVCHFENCGKAFKKHNQLKVHQFSHTQ-----------------QLPYECPHEGCDKRFSLPSRLKRHEKVHAG----Y   59 (85)
T ss_dssp             CEECCSTTCCCEESSHHHHHHHHHHHHT-----------------TCCEECCSTTCCCEESSHHHHHHHHHHHHS----E
T ss_pred             CccCCCCCCCcccCCHHHHHHHHHHhCC-----------------CCCeeCCCCCCcCccCCHHHHHHHHHHhCC----C
Confidence            5999  9999999999999999987764                 57899988  99999999999999999988    9


Q ss_pred             cCCC---CcccccchhHHHHHHhhhc
Q psy16578        154 KCPY---CDKRCKLKGNLMSHIALKH  176 (177)
Q Consensus       154 ~C~~---C~~~f~~~~~l~~H~~~~h  176 (177)
                      .|.+   |++.|...++|.+|+++||
T Consensus        60 ~C~~~~~C~~~f~~~~~l~~H~~~hh   85 (85)
T 2j7j_A           60 PCKKDDSCSFVGKTWTLYLKHVAECH   85 (85)
T ss_dssp             ECCSCSSCCCEESSHHHHHHHHHHCC
T ss_pred             CCCCCCCCCCccCCHHHHHHHHHhcC
Confidence            9999   9999999999999999987

>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.79  E-value=2.6e-19  Score=112.18  Aligned_cols=84  Identities=30%  Similarity=0.534  Sum_probs=75.5

Q ss_pred             CceeCCCCccccccchHHHhHHHHhcCCCCCCCCccccccccCCCCceecCCccccccChhHHHHHHHHh--hCCCCCcc
Q psy16578         77 PKFKCPHCNKKCHQKCNLKSHIALKHDQLLAPLAPRSYRRNSQLNGSFICPKCSNRYVYKHNLKQHLKFE--CGVEPQFK  154 (177)
Q Consensus        77 ~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h--~~~~~~~~  154 (177)
                      .+|.|++|++.|.+...|..|++.+++                 +++|.|..|++.|.+...|..|+..|  +..+.+|.
T Consensus         6 ~~~~C~~C~~~f~~~~~l~~H~~~h~~-----------------~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~   68 (124)
T 2dlq_A            6 SGVECPTCHKKFLSKYYLKVHNRKHTG-----------------EKPFECPKCGKCYFRKENLLEHEARNCMNRSEQVFT   68 (124)
T ss_dssp             SSCCCTTTCCCCSSHHHHHHHHHHHSS-----------------CCSCBCTTTCCBCSSHHHHHHHHHHCCCCSCCCCEE
T ss_pred             CCCCCCCCCCcCCCHHHHHHHHHhCCC-----------------CCCeECCCCCchhcCHHHHHHHHhhhhcCCCCCCeE
Confidence            459999999999999999999988764                 57899999999999999999999974  23366799


Q ss_pred             CCCCcccccchhHHHHHHhhhcC
Q psy16578        155 CPYCDKRCKLKGNLMSHIALKHT  177 (177)
Q Consensus       155 C~~C~~~f~~~~~l~~H~~~~h~  177 (177)
                      |.+|++.|.+...|.+|+++|++
T Consensus        69 C~~C~~~f~~~~~l~~H~~~h~~   91 (124)
T 2dlq_A           69 CSVCQETFRRRMELRLHMVSHTG   91 (124)
T ss_dssp             CSSSCCEESSHHHHHHHHHHHSS
T ss_pred             CCCCCCccCCHHHHHHHHHHcCC
Confidence            99999999999999999999874

>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens}

Probab=99.79  E-value=3.9e-19  Score=115.66  Aligned_cols=89  Identities=27%  Similarity=0.574  Sum_probs=81.2

Q ss_pred             ccccCccchhccChHHHHHHHHHHhCCCCceeCCC--CccccccchHHHhHHHHhcCCCCCCCCccccccccCCCCceec
Q psy16578         49 VFACPKCSKTYLRQYTLNAHLRYECGKRPKFKCPH--CNKKCHQKCNLKSHIALKHDQLLAPLAPRSYRRNSQLNGSFIC  126 (177)
Q Consensus        49 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~--C~~~f~~~~~l~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~C  126 (177)
                      .|.|.+|++.|.....|..|++.|.+.++ |.|.+  |++.|.....|..|++.|++                 +++|.|
T Consensus        62 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~-~~C~~~~C~~~f~~~~~L~~H~~~h~~-----------------~~~~~C  123 (155)
T 2rpc_A           62 WEECPREGKSFKAKYKLVNHIRVHTGEKP-FPCPFPGCGKIFARSENLKIHKRTHTG-----------------EKPFKC  123 (155)
T ss_dssp             BTTCTTSSCCCSSHHHHHHHTHHHHCCCS-EECSCTTTCCEESCHHHHHHHHTTTCS-----------------SCSBCC
T ss_pred             ccCCCCcccccCCHHHHHHHHHhcCCCCc-ccCCcCCCCCccCCHHHHHHHHHhhCC-----------------CCCccC
Confidence            37999999999999999999999998866 99998  99999999999999977664                 688999


Q ss_pred             CC--ccccccChhHHHHHHHHhhCCCCCccCC
Q psy16578        127 PK--CSNRYVYKHNLKQHLKFECGVEPQFKCP  156 (177)
Q Consensus       127 ~~--C~~~f~~~~~l~~H~~~h~~~~~~~~C~  156 (177)
                      ..  |++.|.....|..|+++|++ +++|.|.
T Consensus       124 ~~~~C~k~f~~~~~L~~H~~~H~~-~k~~~c~  154 (155)
T 2rpc_A          124 EFEGCDRRFANSSDRKKHMHVHTS-DKSGPSS  154 (155)
T ss_dssp             SSTTCCCCBSSHHHHHHSSTTTTS-CCCSCSC
T ss_pred             CCCCCCCccCCHHHHHHHHHHhcC-CCCCCCC
Confidence            97  99999999999999999999 5669885

>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.78  E-value=1.2e-19  Score=112.39  Aligned_cols=100  Identities=16%  Similarity=0.206  Sum_probs=83.3

Q ss_pred             CCCCCCCCCCccccCccchhccChHHHHHHHHH--HhCCCCceeCCCCcccc--ccchHHHhHHHHhcCCCCCCCCcccc
Q psy16578         39 SSEDKPAGEDVFACPKCSKTYLRQYTLNAHLRY--ECGKRPKFKCPHCNKKC--HQKCNLKSHIALKHDQLLAPLAPRSY  114 (177)
Q Consensus        39 ~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~--h~~~~~~~~C~~C~~~f--~~~~~l~~H~~~~~~~~~~~~~~~~~  114 (177)
                      .......++++|.|.+|++.|.....|..|++.  |.+..+.+.|.+|++.|  .....|..|++.+.            
T Consensus         9 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~~~h~~~~~~~~C~~C~~~f~f~~~~~l~~H~~~H~------------   76 (115)
T 2dmi_A            9 LYGSIFTGASKFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSKPRKRSLLEMEGKED------------   76 (115)
T ss_dssp             CCCCCCCCCCSEEBSSSSCEESSHHHHHHHHHHTCCCBCSCCCCCCCCCSCCSSCCCCCCCCCCCSCC------------
T ss_pred             hheeeeCCCCCEECCccCchhcCHHHHHHHHHHhCccccCCCccCCCCCcccccccHHHHHHHhhccC------------
Confidence            344456778899999999999999999999998  66565545699999998  89999999986554            


Q ss_pred             ccccCCCCceecCCccccccChhHHHHHHHHhhCCCCCccCC
Q psy16578        115 RRNSQLNGSFICPKCSNRYVYKHNLKQHLKFECGVEPQFKCP  156 (177)
Q Consensus       115 ~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~  156 (177)
                           ++++|.|..|++.|.....|..|+++|+..+. ..++
T Consensus        77 -----~~~~~~C~~C~k~f~~~~~L~~H~~~hh~~~~-~~~~  112 (115)
T 2dmi_A           77 -----AQKVLKCMYCGHSFESLQDLSVHMIKTKHYQK-VSGP  112 (115)
T ss_dssp             -----CCSSCBCSSSCCBCSSHHHHHHHHHHTTTTTC-SCCC
T ss_pred             -----CCcceECCCCCCccCCHHHHHHHHHHhCCccc-CCCC
Confidence                 46899999999999999999999999887444 4443

>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*

Probab=99.77  E-value=5.6e-19  Score=110.72  Aligned_cols=89  Identities=26%  Similarity=0.693  Sum_probs=76.7

Q ss_pred             CCCccccCccchhccChHHHHHHHHHHhCCCCceeCCC--CccccccchHHHhHHHHhcCCCCCCCCccccccccCCCCc
Q psy16578         46 GEDVFACPKCSKTYLRQYTLNAHLRYECGKRPKFKCPH--CNKKCHQKCNLKSHIALKHDQLLAPLAPRSYRRNSQLNGS  123 (177)
Q Consensus        46 ~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~--C~~~f~~~~~l~~H~~~~~~~~~~~~~~~~~~~~~~~~~~  123 (177)
                      +.++|.|.+|++.|.....|..|++.|.+.++ |.|..  |++.|.+...|..|++.+++                 +++
T Consensus        31 ~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~-~~C~~~~C~~~f~~~~~l~~H~~~h~~-----------------~~~   92 (124)
T 1ubd_C           31 GPRVHVCAECGKAFVESSKLKRHQLVHTGEKP-FQCTFEGCGKRFSLDFNLRTHVRIHTG-----------------DRP   92 (124)
T ss_dssp             SCCCEECTTTCCEESSHHHHHHHGGGTSCCCC-EECCSTTCCCEESCHHHHHHHHHHHHC-----------------CCC
T ss_pred             CCCCeECCCCCchhCCHHHHHHHHHHcCCCCC-eeCCCCCCcCccCCHHHHHHHHHHhCC-----------------CCc
Confidence            34679999999999999999999999988755 99986  99999999999999988875                 578


Q ss_pred             eecC--CccccccChhHHHHHHHHhhCCCCCc
Q psy16578        124 FICP--KCSNRYVYKHNLKQHLKFECGVEPQF  153 (177)
Q Consensus       124 ~~C~--~C~~~f~~~~~l~~H~~~h~~~~~~~  153 (177)
                      |.|.  .|++.|.....|..|+++|+++ +++
T Consensus        93 ~~C~~~~C~~~f~~~~~L~~H~~~H~~~-k~~  123 (124)
T 1ubd_C           93 YVCPFDGCNKKFAQSTNLKSHILTHAKA-KNN  123 (124)
T ss_dssp             CCCCSTTCCCCCSSTTTTHHHHHHHC------
T ss_pred             eECCCCCCCCccCCHHHHHHHHHHHccc-ccC
Confidence            9996  5999999999999999999884 434

>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A

Probab=99.76  E-value=1.1e-19  Score=107.32  Aligned_cols=83  Identities=22%  Similarity=0.398  Sum_probs=76.5

Q ss_pred             CCccccCccchhccChHHHHHHHHHHhCCCCceeCCCCccccccchHHHhHHHHhcCCCCCCCCccccccccCCCCceec
Q psy16578         47 EDVFACPKCSKTYLRQYTLNAHLRYECGKRPKFKCPHCNKKCHQKCNLKSHIALKHDQLLAPLAPRSYRRNSQLNGSFIC  126 (177)
Q Consensus        47 ~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~C  126 (177)
                      +++|.|.+|++.|....+|..|++.|.+.++ |.|.+|++.|.....|..|+..+++                  .+|.|
T Consensus         1 ek~~~C~~C~k~f~~~~~L~~H~~~H~~~~~-~~C~~C~k~f~~~~~L~~H~~~h~~------------------~~~~c   61 (88)
T 1llm_C            1 MKPFQCRICMRNFSRSDHLTTHIRTHTGEKP-FACDICGRKFARSDERKRHRDIQHI------------------LPILE   61 (88)
T ss_dssp             CCCEECTTTCCEESCHHHHHHHHHHHHCCCC-EECTTTCCEESSHHHHHHHHHHHTH------------------HHHHH
T ss_pred             CCCCcCCCCCCccCCHHHHHHHHHHcCCCCC-ccCCCCCCccCCHHHHHHHHHHhCC------------------CcchH
Confidence            3679999999999999999999999998765 9999999999999999999988874                  57999


Q ss_pred             CCccccccChhHHHHHHHHhhC
Q psy16578        127 PKCSNRYVYKHNLKQHLKFECG  148 (177)
Q Consensus       127 ~~C~~~f~~~~~l~~H~~~h~~  148 (177)
                      ..|++.|.....|..|++.+++
T Consensus        62 ~~C~~~f~~~~~L~~H~~~~h~   83 (88)
T 1llm_C           62 DKVEELLSKNYHLENEVARLKK   83 (88)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhhHHHHHHHHH
Confidence            9999999999999999998764

>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A

Probab=99.76  E-value=1.8e-18  Score=102.12  Aligned_cols=83  Identities=29%  Similarity=0.600  Sum_probs=75.4

Q ss_pred             CCccccCc--cchhccChHHHHHHHHHHhCCCCceeCC--CCccccccchHHHhHHHHhcCCCCCCCCccccccccCCCC
Q psy16578         47 EDVFACPK--CSKTYLRQYTLNAHLRYECGKRPKFKCP--HCNKKCHQKCNLKSHIALKHDQLLAPLAPRSYRRNSQLNG  122 (177)
Q Consensus        47 ~~~~~C~~--C~~~f~~~~~l~~H~~~h~~~~~~~~C~--~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~~~~~~~~~~~  122 (177)
                      ..+|.|.+  |++.|.....|..|++.|.+.++ |.|+  .|++.|.....|..|+..+++                 ++
T Consensus         3 ~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~-~~C~~~~C~~~f~~~~~l~~H~~~h~~-----------------~~   64 (89)
T 2wbs_A            3 TATHTCDYAGCGKTYTKSSHLKAHLRTHTGEKP-YHCDWDGCGWKFARSDELTRHYRKHTG-----------------HR   64 (89)
T ss_dssp             CCCEECCSTTTCCEESSHHHHHHHHTTSCSSCC-EECCSTTTCCEESSHHHHHHHHHHHHC-----------------CC
T ss_pred             CCCeeCCCCCCCCcCCCHHHHHHHHHhcCCCCC-cCCCCCCCCCccCCHHHHHHHHHHcCC-----------------CC
Confidence            45699999  99999999999999999988755 9997  599999999999999987764                 57


Q ss_pred             ceecCCccccccChhHHHHHHHHhh
Q psy16578        123 SFICPKCSNRYVYKHNLKQHLKFEC  147 (177)
Q Consensus       123 ~~~C~~C~~~f~~~~~l~~H~~~h~  147 (177)
                      +|.|..|++.|.....|..|+++|.
T Consensus        65 ~~~C~~C~~~f~~~~~l~~H~~~H~   89 (89)
T 2wbs_A           65 PFQCQKCDRAFSRSDHLALHMKRHF   89 (89)
T ss_dssp             CEECSSSSCEESSHHHHHHHGGGGC
T ss_pred             CccCCCCCcccCCHHHHHHHHHhhC
Confidence            8999999999999999999999883

>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}

Probab=99.74  E-value=5.1e-19  Score=111.76  Aligned_cols=112  Identities=21%  Similarity=0.356  Sum_probs=83.6

Q ss_pred             CCCCCCccccCccchhccChHHHHHHHHHHhCC--CCceeCCCCccccc------cchHHHhHHHHhcCCCCCCCCcccc
Q psy16578         43 KPAGEDVFACPKCSKTYLRQYTLNAHLRYECGK--RPKFKCPHCNKKCH------QKCNLKSHIALKHDQLLAPLAPRSY  114 (177)
Q Consensus        43 ~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~--~~~~~C~~C~~~f~------~~~~l~~H~~~~~~~~~~~~~~~~~  114 (177)
                      ...+.++|.|...+....  ..+..+.+.+...  .+.+.|.+|++.|.      ....|..|+ .++            
T Consensus         6 ~~~~~k~~~~~~k~~~~~--~s~ee~~~~~~l~~~~~~~~c~~~~~~~~~~~~~~~~~~l~~h~-~h~------------   70 (129)
T 2wbt_A            6 VDSGSKKYLSNHKGIFIH--VTLEELKRYHQLTPEQKRLIRAIVKTLIHNPQLLDESSYLYRLL-ASK------------   70 (129)
T ss_dssp             CCTTCCGGGGCSSCEEEE--CCHHHHHHHTTSCHHHHHHHHHHHHHHHHCGGGTTTHHHHHHHH-HHH------------
T ss_pred             hcccccccccccCCeeee--ecHHhhhccccCChhhCcccchhhhcccCCCcccCCHHHHHHHH-HhC------------
Confidence            345677888877654332  2333443332211  12378888877766      556677777 444            


Q ss_pred             ccccCCCCceecCCccccccChhHHHHHHHHhhCCCCCccCCCCcccccchhHHHHHHhhhcC
Q psy16578        115 RRNSQLNGSFICPKCSNRYVYKHNLKQHLKFECGVEPQFKCPYCDKRCKLKGNLMSHIALKHT  177 (177)
Q Consensus       115 ~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~  177 (177)
                           ++++|.|..|++.|.....|..|+++|   +++|.|.+|++.|...++|.+|+++|||
T Consensus        71 -----~~~~~~C~~C~k~f~~~~~l~~H~~~H---~~~~~C~~C~k~f~~~~~l~~H~~~h~~  125 (129)
T 2wbt_A           71 -----AISQFVCPLCLMPFSSSVSLKQHIRYT---EHTKVCPVCKKEFTSTDSALDHVCKKHN  125 (129)
T ss_dssp             -----HHCSEECTTTCCEESSHHHHHHHHHHT---CCCCBCTTTCCBCSSHHHHHHHHHHTTC
T ss_pred             -----CCCCeECCCCCcccCCHhHHHHHHHHC---CCCCCCCCCCcccCCHHHHHHHHHHHCC
Confidence                 468999999999999999999999998   5569999999999999999999999986

>4gzn_C ZFP-57, zinc finger protein 57; transcription-DNA complex; HET: DNA 5CM; 0.99A {Mus musculus}

Probab=99.73  E-value=5.9e-18  Score=92.01  Aligned_cols=57  Identities=32%  Similarity=0.634  Sum_probs=53.1

Q ss_pred             CCCccccCccchhccChHHHHHHHHHHhCCCCceeCCCCccccccchHHHhHHHHhcC
Q psy16578         46 GEDVFACPKCSKTYLRQYTLNAHLRYECGKRPKFKCPHCNKKCHQKCNLKSHIALKHD  103 (177)
Q Consensus        46 ~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~  103 (177)
                      +++||.|.+||+.|....+|..|+++|.+.++ |.|.+||+.|.....|..|++.|.+
T Consensus         1 SEKpy~C~~C~k~F~~~~~L~~H~~~Ht~ekp-~~C~~C~k~F~~~~~L~~H~~~Htg   57 (60)
T 4gzn_C            1 SERPFFCNFCGKTYRDASGLSRHRRAHLGYRP-RSCPECGKCFRDQSEVNRHLKVHQN   57 (60)
T ss_dssp             CCCCEECTTTCCEESSHHHHHHHHHHHHTCCC-EECTTTCCEESSHHHHHHHGGGGSC
T ss_pred             CCCCccCCCCCCEeCCHHHHHHHHHHhCCCcC-eECCCCCCCcCCHHHHHHHhCccCC
Confidence            36899999999999999999999999998866 9999999999999999999988765

>2j7j_A Transcription factor IIIA; zinc finger module, alternative initiation, nuclear protein, phosphorylation, hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B 2hgh_A

Probab=99.72  E-value=1.7e-17  Score=96.97  Aligned_cols=78  Identities=24%  Similarity=0.509  Sum_probs=72.1

Q ss_pred             cccc--CccchhccChHHHHHHHHHHhCCCCceeCCC--CccccccchHHHhHHHHhcCCCCCCCCccccccccCCCCce
Q psy16578         49 VFAC--PKCSKTYLRQYTLNAHLRYECGKRPKFKCPH--CNKKCHQKCNLKSHIALKHDQLLAPLAPRSYRRNSQLNGSF  124 (177)
Q Consensus        49 ~~~C--~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~--C~~~f~~~~~l~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~  124 (177)
                      +|.|  ..|++.|.....|..|++.|.+.++ |.|++  |++.|.....|..|++.+++                    |
T Consensus         1 p~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~-~~C~~~~C~~~f~~~~~l~~H~~~h~~--------------------~   59 (85)
T 2j7j_A            1 MYVCHFENCGKAFKKHNQLKVHQFSHTQQLP-YECPHEGCDKRFSLPSRLKRHEKVHAG--------------------Y   59 (85)
T ss_dssp             CEECCSTTCCCEESSHHHHHHHHHHHHTTCC-EECCSTTCCCEESSHHHHHHHHHHHHS--------------------E
T ss_pred             CccCCCCCCCcccCCHHHHHHHHHHhCCCCC-eeCCCCCCcCccCCHHHHHHHHHHhCC--------------------C
Confidence            5889  8899999999999999999998755 99998  99999999999999987763                    8


Q ss_pred             ecCC---ccccccChhHHHHHHHHhh
Q psy16578        125 ICPK---CSNRYVYKHNLKQHLKFEC  147 (177)
Q Consensus       125 ~C~~---C~~~f~~~~~l~~H~~~h~  147 (177)
                      .|..   |++.|.....|..|+++|+
T Consensus        60 ~C~~~~~C~~~f~~~~~l~~H~~~hh   85 (85)
T 2j7j_A           60 PCKKDDSCSFVGKTWTLYLKHVAECH   85 (85)
T ss_dssp             ECCSCSSCCCEESSHHHHHHHHHHCC
T ss_pred             CCCCCCCCCCccCCHHHHHHHHHhcC
Confidence            9999   9999999999999999875

>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.72  E-value=3.5e-18  Score=100.26  Aligned_cols=83  Identities=23%  Similarity=0.477  Sum_probs=69.3

Q ss_pred             HHHHHHHHhCCCCceeCCCCccccccchHHHhHHHHhcCCCCCCCCccccccccCCCCceecCCccccccChhHHHHHHH
Q psy16578         65 LNAHLRYECGKRPKFKCPHCNKKCHQKCNLKSHIALKHDQLLAPLAPRSYRRNSQLNGSFICPKCSNRYVYKHNLKQHLK  144 (177)
Q Consensus        65 l~~H~~~h~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~  144 (177)
                      +..|+++|.+.++ |.|.+|++.|.....|..|+..++...             ..+++|.|..|++.|.....|..|++
T Consensus         3 ~~~H~~~H~~~k~-~~C~~C~~~f~~~~~l~~H~~~~~~~~-------------~~~~~~~C~~C~~~f~~~~~L~~H~~   68 (86)
T 1x6h_A            3 SGSSGRTHTGEKP-YACSHCDKTFRQKQLLDMHFKRYHDPN-------------FVPAAFVCSKCGKTFTRRNTMARHAD   68 (86)
T ss_dssp             TTCCSTTCCCCCC-EECSSSSCEESSHHHHHHHHHHTTCSS-------------CCCCCEECSSSCCEESCHHHHHHHHH
T ss_pred             cccccceecCCCC-CcCCCCCCccCCHHHHHHHHHHhcCCc-------------CCCcceECCCCCChhCCHHHHHHHHH
Confidence            4568888887755 999999999999999999998877521             11368999999999999999999999


Q ss_pred             HhhCCCCCccCCCCcccc
Q psy16578        145 FECGVEPQFKCPYCDKRC  162 (177)
Q Consensus       145 ~h~~~~~~~~C~~C~~~f  162 (177)
                      +|++ +.++.|..|+..|
T Consensus        69 ~h~~-~~~~~~~~~~~~~   85 (86)
T 1x6h_A           69 NCAG-PDGVEGENSGPSS   85 (86)
T ss_dssp             HCCC-CCSCCCCCCCCCC
T ss_pred             HccC-CCCcccCCCCCCC
Confidence            9999 5559999998765

>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}

Probab=99.72  E-value=6.1e-18  Score=91.54  Aligned_cols=56  Identities=27%  Similarity=0.531  Sum_probs=50.2

Q ss_pred             CCceecCCccccccChhHHHHHHHHhhCCCCCccCCCCcccccchhHHHHHHhhhcC
Q psy16578        121 NGSFICPKCSNRYVYKHNLKQHLKFECGVEPQFKCPYCDKRCKLKGNLMSHIALKHT  177 (177)
Q Consensus       121 ~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~  177 (177)
                      +++|.|..|++.|.....|..|+++|++ +++|.|++|++.|....+|.+|+++||+
T Consensus         2 ~~~~~C~~C~~~f~~~~~l~~H~~~h~~-~~~~~C~~C~~~f~~~~~l~~H~~~hh~   57 (57)
T 3uk3_C            2 SSSRECSYCGKFFRSNYYLNIHLRTHTG-EKPYKCEFCEYAAAQKTSLRYHLERHHK   57 (57)
T ss_dssp             ---CBCTTTCCBCSCHHHHHHHHHHHHC-CCCEECSSSSCEESSHHHHHHHHHHHC-
T ss_pred             CCCccCCCCcchhCChHHHHHHHHHcCC-CCCcCCCCCcchhCCHHHHHHHHHHhcC
Confidence            5789999999999999999999999999 5569999999999999999999999985

>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.72  E-value=2.4e-17  Score=95.11  Aligned_cols=69  Identities=23%  Similarity=0.613  Sum_probs=52.1

Q ss_pred             CceeCCC--CccccccchHHHhHHHHhcCCCCCCCCccccccccCCCCceecCC--ccccccChhHHHHHHHHhhCCCCC
Q psy16578         77 PKFKCPH--CNKKCHQKCNLKSHIALKHDQLLAPLAPRSYRRNSQLNGSFICPK--CSNRYVYKHNLKQHLKFECGVEPQ  152 (177)
Q Consensus        77 ~~~~C~~--C~~~f~~~~~l~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~--C~~~f~~~~~l~~H~~~h~~~~~~  152 (177)
                      ++|.|..  |++.|.....|..|++..|.                ++++|.|..  |++.|.....|..|+++|++ +++
T Consensus         6 ~~~~C~~~~C~~~f~~~~~L~~H~~~~H~----------------~~~~~~C~~~~C~k~f~~~~~L~~H~~~H~~-~~~   68 (79)
T 2dlk_A            6 SGMPCDFPGCGRIFSNRQYLNHHKKYQHI----------------HQKSFSCPEPACGKSFNFKKHLKEHMKLHSD-TRD   68 (79)
T ss_dssp             SSEECSSTTTCCEESSHHHHHHHHHHGGG----------------SCCCEECSCTTTCCEESSHHHHHHHHHHHHT-SCC
T ss_pred             CCccCCCCCCcCccCCHHHHHHHHHHHhC----------------CCCCeECCCCCCcCccCCHHHHHHHHHHhCC-CCC
Confidence            3477776  88888888888888763332                357788887  88888888888888888887 455


Q ss_pred             ccCCCCcccc
Q psy16578        153 FKCPYCDKRC  162 (177)
Q Consensus       153 ~~C~~C~~~f  162 (177)
                      |.|.+|++.|
T Consensus        69 ~~C~~C~k~F   78 (79)
T 2dlk_A           69 YICEFSGPSS   78 (79)
T ss_dssp             CSCCSSSCCC
T ss_pred             eeCCCCCCCC
Confidence            8888888877

>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.70  E-value=2.4e-17  Score=92.94  Aligned_cols=59  Identities=29%  Similarity=0.520  Sum_probs=54.8

Q ss_pred             cCCCCceecCCccccccChhHHHHHHHHhhCCCCCccCCCCcccccchhHHHHHHhhhcC
Q psy16578        118 SQLNGSFICPKCSNRYVYKHNLKQHLKFECGVEPQFKCPYCDKRCKLKGNLMSHIALKHT  177 (177)
Q Consensus       118 ~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~  177 (177)
                      +.++++|.|..|++.|.....|..|+++|++ +++|.|.+|++.|....+|.+|+++||+
T Consensus         4 ~~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~-~~~~~C~~C~~~f~~~~~L~~H~~~h~~   62 (70)
T 1x5w_A            4 GSSGHPEKCSECSYSCSSKAALRIHERIHCT-DRPFKCNYCSFDTKQPSNLSKHMKKFHG   62 (70)
T ss_dssp             CCCCCSEECSSSSCEESSHHHHHHHHGGGCC-SCSEECSSSSCEESSHHHHHHHHHHHHS
T ss_pred             CCCCCCeECCCCCcccCCHHHHHHHHHHcCC-CCCEeCCCCCCccCCHHHHHHHHHHHhC
Confidence            4568999999999999999999999999988 5569999999999999999999999985

>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.69  E-value=4e-17  Score=92.56  Aligned_cols=60  Identities=22%  Similarity=0.453  Sum_probs=55.4

Q ss_pred             ccCCCCceecCCccccccChhHHHHHHHHhhCCCCCccCCCCcccccchhHHHHHHhhhcC
Q psy16578        117 NSQLNGSFICPKCSNRYVYKHNLKQHLKFECGVEPQFKCPYCDKRCKLKGNLMSHIALKHT  177 (177)
Q Consensus       117 ~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~  177 (177)
                      .+.++++|.|..|++.|.....|..|+++|++ +++|.|.+|++.|.....|.+|+++|++
T Consensus         8 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~-~~~~~C~~C~~~f~~~~~L~~H~~~H~~   67 (72)
T 1x6e_A            8 IHSGEKPYGCVECGKAFSRSSILVQHQRVHTG-EKPYKCLECGKAFSQNSGLINHQRIHTS   67 (72)
T ss_dssp             TTTTCCCEECSSSCCEESSHHHHHHHHHGGGC-SCCEECSSSCCEESSHHHHHHHHHHHHS
T ss_pred             ccCCCCCccCCCCCCccCCHHHHHHHHHhcCC-CCCeECCCCCcccCCHHHHHHHHHhcCC
Confidence            45578999999999999999999999999998 5569999999999999999999999875

>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1

Probab=99.69  E-value=2.8e-17  Score=91.60  Aligned_cols=60  Identities=23%  Similarity=0.480  Sum_probs=54.5

Q ss_pred             cCCCCceecCCccccccChhHHHHHHHHhh-CCCCCccCCCCcccccchhHHHHHHhhhcC
Q psy16578        118 SQLNGSFICPKCSNRYVYKHNLKQHLKFEC-GVEPQFKCPYCDKRCKLKGNLMSHIALKHT  177 (177)
Q Consensus       118 ~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~-~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~  177 (177)
                      +.++++|.|..|++.|.....|..|+++++ .++++|.|++|++.|...++|.+|++++|+
T Consensus         5 h~~~k~~~C~~C~k~f~~~~~l~~H~~~~H~~~~~~~~C~~C~k~f~~~~~L~~H~~~~H~   65 (66)
T 2drp_A            5 KEGEHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKIIHK   65 (66)
T ss_dssp             EEETTEEECTTTCCEESSHHHHHHHHHHHSSSSCCCEECTTTCCEESCHHHHHHHHHHHTC
T ss_pred             cCCCcceECCCCcchhCCHHHHHHHHHHHcCCCCcCeECCCCCCccCCHHHHHHHHHHHcC
Confidence            457899999999999999999999999844 447779999999999999999999999996

>2lv2_A Insulinoma-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=99.69  E-value=4.1e-17  Score=94.99  Aligned_cols=59  Identities=25%  Similarity=0.493  Sum_probs=53.1

Q ss_pred             ccCCCCceecCCccccccChhHHHHHHHHhhCCCCCccCCCCcccccchhHHHHHHhhhc
Q psy16578        117 NSQLNGSFICPKCSNRYVYKHNLKQHLKFECGVEPQFKCPYCDKRCKLKGNLMSHIALKH  176 (177)
Q Consensus       117 ~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C~~~f~~~~~l~~H~~~~h  176 (177)
                      .....++|.|..|++.|.....|..|+++|++ +++|.|.+|++.|....+|.+|++..|
T Consensus        22 ~~~~~~~h~C~~Cgk~F~~~~~L~~H~~~H~~-~k~~~C~~C~k~F~~~~~L~~H~~~~H   80 (85)
T 2lv2_A           22 LSASAECHLCPVCGESFASKGAQERHLRLLHA-AQVFPCKYCPATFYSSPGLTRHINKCH   80 (85)
T ss_dssp             SCCCCTTEECTTSCCEESSHHHHHHHHHTTSC-SSSEECTTSSCEESSHHHHHHHHHTTC
T ss_pred             CCCCCCCEECCCCCCCcCcHHHHhhhhhhccC-CCccCCCCCCCEeCCHHHHHHhCcccC
Confidence            34456789999999999999999999999999 566999999999999999999997655

>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.68  E-value=4.9e-18  Score=102.16  Aligned_cols=58  Identities=28%  Similarity=0.487  Sum_probs=53.7

Q ss_pred             CCCceecCCcccccc-ChhHHHHHHHHhhCCCCCccCCCCcccccchhHHHHHHhhhcC
Q psy16578        120 LNGSFICPKCSNRYV-YKHNLKQHLKFECGVEPQFKCPYCDKRCKLKGNLMSHIALKHT  177 (177)
Q Consensus       120 ~~~~~~C~~C~~~f~-~~~~l~~H~~~h~~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~  177 (177)
                      ++++|.|..|++.|. ....|..|+++|++.+++|.|.+|++.|....+|.+|+++||+
T Consensus        21 ~~~~~~C~~C~k~f~~~~~~L~~H~~~h~~~~~~~~C~~C~k~F~~~~~L~~H~~~h~~   79 (98)
T 2gqj_A           21 ERGEAVCPTCNVVTRKTLVGLKKHMEVCQKLQDALKCQHCRKQFKSKAGLNYHTMAEHS   79 (98)
T ss_dssp             TTSCCCCTTTCCCCSSCSHHHHHHHHHHHHHHHHHSCSSSCCCCSCHHHHHHHHHHHSC
T ss_pred             cCCCcCCCCCCCChhhhHHHHHHHHHHHcCCCCCEECCCCCCccCCHHHHHHHHHHHcC
Confidence            578999999999999 9999999999998844559999999999999999999999985

>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=99.68  E-value=6.5e-17  Score=92.17  Aligned_cols=60  Identities=23%  Similarity=0.579  Sum_probs=55.2

Q ss_pred             ccCCCCceecCCccccccChhHHHHHHHHhhCCCCCccCCCCcccccchhHHHHHHhhhcC
Q psy16578        117 NSQLNGSFICPKCSNRYVYKHNLKQHLKFECGVEPQFKCPYCDKRCKLKGNLMSHIALKHT  177 (177)
Q Consensus       117 ~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~  177 (177)
                      ...++++|.|..|++.|.....|..|+++|++ +++|.|.+|++.|....+|.+|+++|++
T Consensus        11 ~~~~~~~~~C~~C~k~f~~~~~l~~H~~~H~~-~~~~~C~~C~k~f~~~~~L~~H~~~H~~   70 (74)
T 2lce_A           11 MTHSDKPYKCDRCQASFRYKGNLASHKTVHTG-EKPYRCNICGAQFNRPANLKTHTRIHSG   70 (74)
T ss_dssp             CCCCCCSBCCTTSSCCBSCHHHHHHHHHHHCC-CCSEECTTTCCEESCHHHHHHHHHHHCC
T ss_pred             ccCCCCCeECCCCCceeCCHHHHHHHHHHcCC-CCCEECCCCCchhCCHHHHHHHHHhcCC
Confidence            44567899999999999999999999999998 5669999999999999999999999975

>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.67  E-value=2e-16  Score=91.23  Aligned_cols=72  Identities=26%  Similarity=0.559  Sum_probs=63.5

Q ss_pred             CCCCccccCc--cchhccChHHHHHHHH-HHhCCCCceeCCC--CccccccchHHHhHHHHhcCCCCCCCCccccccccC
Q psy16578         45 AGEDVFACPK--CSKTYLRQYTLNAHLR-YECGKRPKFKCPH--CNKKCHQKCNLKSHIALKHDQLLAPLAPRSYRRNSQ  119 (177)
Q Consensus        45 ~~~~~~~C~~--C~~~f~~~~~l~~H~~-~h~~~~~~~~C~~--C~~~f~~~~~l~~H~~~~~~~~~~~~~~~~~~~~~~  119 (177)
                      .++++|.|..  |++.|....+|..|++ .|.+.+ +|.|.+  |++.|.....|..|++.|++                
T Consensus         3 ~~~~~~~C~~~~C~~~f~~~~~L~~H~~~~H~~~~-~~~C~~~~C~k~f~~~~~L~~H~~~H~~----------------   65 (79)
T 2dlk_A            3 SGSSGMPCDFPGCGRIFSNRQYLNHHKKYQHIHQK-SFSCPEPACGKSFNFKKHLKEHMKLHSD----------------   65 (79)
T ss_dssp             SCCSSEECSSTTTCCEESSHHHHHHHHHHGGGSCC-CEECSCTTTCCEESSHHHHHHHHHHHHT----------------
T ss_pred             CCCCCccCCCCCCcCccCCHHHHHHHHHHHhCCCC-CeECCCCCCcCccCCHHHHHHHHHHhCC----------------
Confidence            4567799987  9999999999999999 577664 499999  99999999999999988774                


Q ss_pred             CCCceecCCcccccc
Q psy16578        120 LNGSFICPKCSNRYV  134 (177)
Q Consensus       120 ~~~~~~C~~C~~~f~  134 (177)
                       +++|.|..|++.|.
T Consensus        66 -~~~~~C~~C~k~F~   79 (79)
T 2dlk_A           66 -TRDYICEFSGPSSG   79 (79)
T ss_dssp             -SCCCSCCSSSCCCC
T ss_pred             -CCCeeCCCCCCCCC
Confidence             58899999999984

>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.66  E-value=2.2e-16  Score=94.42  Aligned_cols=72  Identities=19%  Similarity=0.257  Sum_probs=62.4

Q ss_pred             cccccchHHHhHHHHhcCCCCCCCCccccccccCCCCceecCCccccc-cChhHHHHHHHHhhCCCCCccCCCCcccccc
Q psy16578         86 KKCHQKCNLKSHIALKHDQLLAPLAPRSYRRNSQLNGSFICPKCSNRY-VYKHNLKQHLKFECGVEPQFKCPYCDKRCKL  164 (177)
Q Consensus        86 ~~f~~~~~l~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~C~~~f-~~~~~l~~H~~~h~~~~~~~~C~~C~~~f~~  164 (177)
                      ..|.....|..|+..+.                 ++++|.|..|++.| .....|..|+++| + +++|.|.+|++.|..
T Consensus        14 ~~~~~~~~~~~~~~~~~-----------------~~~~~~C~~C~k~F~~~~~~L~~H~~~h-~-~k~~~C~~Cgk~F~~   74 (96)
T 2ctd_A           14 PVYAAGSLEEQWYLEIV-----------------DKGSVSCPTCQAVGRKTIEGLKKHMENC-K-QEMFTCHHCGKQLRS   74 (96)
T ss_dssp             CSSCTTCHHHHHHHHHH-----------------HTSCEECTTTCSCEESSHHHHHHHHHHH-C-CCCCCCSSSCCCCSS
T ss_pred             CCCCCchHHHHHHHHhc-----------------CCCCcCCCCCCCCcccCHHHHHHHHHHH-C-CCCeECCCCCCeeCC
Confidence            35666777888887665                 36899999999999 9999999999999 7 667999999999999


Q ss_pred             hhHHHHH-Hhhhc
Q psy16578        165 KGNLMSH-IALKH  176 (177)
Q Consensus       165 ~~~l~~H-~~~~h  176 (177)
                      ..+|.+| +++|.
T Consensus        75 ~~~L~~H~~~~H~   87 (96)
T 2ctd_A           75 LAGMKYHVMANHN   87 (96)
T ss_dssp             HHHHHHHHHHHTC
T ss_pred             HHHHHHHhHHhcC
Confidence            9999999 77764

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.65  E-value=1.3e-16  Score=91.80  Aligned_cols=60  Identities=22%  Similarity=0.409  Sum_probs=54.2

Q ss_pred             cCCCCceecCCccccccChhHHHHHHHHhhC--CCCCccCCCCcccccchhHHHHHHhhhcC
Q psy16578        118 SQLNGSFICPKCSNRYVYKHNLKQHLKFECG--VEPQFKCPYCDKRCKLKGNLMSHIALKHT  177 (177)
Q Consensus       118 ~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~--~~~~~~C~~C~~~f~~~~~l~~H~~~~h~  177 (177)
                      +.++++|.|..|++.|.....|..|+++|++  .+++|.|.+|++.|....+|.+|++.+|.
T Consensus         2 h~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~~~~C~~C~k~f~~~~~L~~H~~~~H~   63 (78)
T 2d9h_A            2 SSGSSGLQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSHP   63 (78)
T ss_dssp             CCSCCCEECSSSCCEESSHHHHHHHHHHHHHHTTTCCEECTTTCCEESSHHHHHHHHHHTST
T ss_pred             CCCCcCeECCCCCCeeCCHHHHHHHHHHhhccCCCcccCCCCCCchhCCHHHHHHHHHHhCC
Confidence            3478999999999999999999999999986  35669999999999999999999987764

>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A

Probab=99.65  E-value=1.3e-16  Score=86.19  Aligned_cols=54  Identities=31%  Similarity=0.649  Sum_probs=50.8

Q ss_pred             ceecCCccccccChhHHHHHHHHhhCCCCCccCCCCcccccchhHHHHHHhhhcC
Q psy16578        123 SFICPKCSNRYVYKHNLKQHLKFECGVEPQFKCPYCDKRCKLKGNLMSHIALKHT  177 (177)
Q Consensus       123 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~  177 (177)
                      ||.|..|++.|.....|..|+++|++ +++|.|.+|++.|...++|.+|+++|++
T Consensus         1 p~~C~~C~~~f~~~~~l~~H~~~h~~-~~~~~C~~C~~~f~~~~~l~~H~~~h~~   54 (57)
T 1bbo_A            1 KYICEECGIRXKKPSMLKKHIRTHTD-VRPYHCTYCNFSFKTKGNLTKHMKSKAH   54 (57)
T ss_dssp             CCBCTTTCCBCSSHHHHHHHHHHTSS-CCCEECSSSSCEESSHHHHHHHHHSSSS
T ss_pred             CCcCCCCcCcCCCHHHHHHHHHhcCC-CCCccCCCCCchhcCHHHHHHHHHHhcc
Confidence            58999999999999999999999988 5669999999999999999999999875

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.65  E-value=2.7e-16  Score=90.27  Aligned_cols=62  Identities=24%  Similarity=0.481  Sum_probs=54.6

Q ss_pred             cccCCCCceecCCccccccChhHHHHHHHH-hhCCCCCccCCCCcccccchhHHHHHHhhhcC
Q psy16578        116 RNSQLNGSFICPKCSNRYVYKHNLKQHLKF-ECGVEPQFKCPYCDKRCKLKGNLMSHIALKHT  177 (177)
Q Consensus       116 ~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~-h~~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~  177 (177)
                      ..+.++++|.|..|++.|.....|..|++. |.+.+++|.|.+|++.|.....|.+|++++|+
T Consensus         8 ~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~~h~~~~~~~~C~~C~~~f~~~~~L~~H~~~~H~   70 (77)
T 2ct1_A            8 RTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRKQHS   70 (77)
T ss_dssp             CCCSCCCSEECTTTCCEESCHHHHHHHHHHHSSSSCSSEECSSSSCEESSHHHHHHHHHHTSC
T ss_pred             cccCCCCCeECCCcCchhCCHHHHHHHHHHhcCCCCCccCCCCCCCccCCHHHHHHHHHHhCC
Confidence            345578999999999999999999999984 55544779999999999999999999999885

>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.64  E-value=2.5e-16  Score=90.44  Aligned_cols=60  Identities=20%  Similarity=0.506  Sum_probs=54.9

Q ss_pred             ccCCCCceecCCccccccChhHHHHHHHHhhCCCCCccCCCCcccccchhHHHHHHhhhcC
Q psy16578        117 NSQLNGSFICPKCSNRYVYKHNLKQHLKFECGVEPQFKCPYCDKRCKLKGNLMSHIALKHT  177 (177)
Q Consensus       117 ~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~  177 (177)
                      ...++++|.|..|++.|.....|..|+++|++ +++|.|.+|++.|.....|.+|+++|++
T Consensus        12 ~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~-~~~~~C~~C~~~f~~~~~L~~H~~~H~~   71 (77)
T 2cot_A           12 QQRERRRYKCDECGKSFSHSSDLSKHRRTHTG-EKPYKCDECGKAFIQRSHLIGHHRVHTG   71 (77)
T ss_dssp             CCCCSCSSBCSSSCCBCSCHHHHHHHHTTTCC-SCSEECSSSCCEESSHHHHHHHGGGSCC
T ss_pred             cCCCCCCEECCCCCcccCCHHHHHHHHHHcCC-CcCeeCCCCCCccCCHHHHHHHHHHhCC
Confidence            34467899999999999999999999999998 5669999999999999999999999875

>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers, 4-stranded parallel/anti-parallel beta- sheet, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.64  E-value=1.8e-16  Score=95.39  Aligned_cols=69  Identities=25%  Similarity=0.467  Sum_probs=42.5

Q ss_pred             CceeCCCCccccccchHHHhHHHHhcCCCCCCCCccccccccCCCCceecCCccccccChhHHHHH-HHHhhCCCCCccC
Q psy16578         77 PKFKCPHCNKKCHQKCNLKSHIALKHDQLLAPLAPRSYRRNSQLNGSFICPKCSNRYVYKHNLKQH-LKFECGVEPQFKC  155 (177)
Q Consensus        77 ~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H-~~~h~~~~~~~~C  155 (177)
                      +||.|.+|++.|.....|..|++..|..             ..++++|.|..|++.|.....|..| +++|++ +++|.|
T Consensus        17 kpy~C~~Cgk~F~~~~~L~~H~r~~H~~-------------~~~ekpf~C~~Cgk~F~~~~~L~~H~~r~Htg-ekpy~C   82 (102)
T 2ghf_A           17 GGYECKYCTFQTPDLNMFTFHVDSEHPN-------------VVLNSSYVCVECNFLTKRYDALSEHNLKYHPG-EENFKL   82 (102)
T ss_dssp             SSEECSSCSCEESCHHHHHHHHHHHCSS-------------CCCSCCEEETTTTEEESSTHHHHTHHHHTSTT-CCCEEE
T ss_pred             cCcCCCCCCCccCCHHHHHHHHHhhCCC-------------CCCCCCcCCCCCCcccCCHHHHHHHHHHhcCC-CCCeeC
Confidence            3466777777776666677776543310             0134667777777777777777777 566666 444777


Q ss_pred             CCCc
Q psy16578        156 PYCD  159 (177)
Q Consensus       156 ~~C~  159 (177)
                      .++.
T Consensus        83 ~~~~   86 (102)
T 2ghf_A           83 TMVK   86 (102)
T ss_dssp             EECC
T ss_pred             Cccc
Confidence            6643

>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.64  E-value=6.9e-16  Score=92.21  Aligned_cols=78  Identities=18%  Similarity=0.254  Sum_probs=67.2

Q ss_pred             hccChHHHHHHHHHHhCCCCceeCCCCcccc-ccchHHHhHHHHhcCCCCCCCCccccccccCCCCceecCCccccccCh
Q psy16578         58 TYLRQYTLNAHLRYECGKRPKFKCPHCNKKC-HQKCNLKSHIALKHDQLLAPLAPRSYRRNSQLNGSFICPKCSNRYVYK  136 (177)
Q Consensus        58 ~f~~~~~l~~H~~~h~~~~~~~~C~~C~~~f-~~~~~l~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~C~~~f~~~  136 (177)
                      .|.....|..|++.+.+.++ |.|++|++.| .....|..|++.| +                 +++|.|..|++.|...
T Consensus        15 ~~~~~~~~~~~~~~~~~~~~-~~C~~C~k~F~~~~~~L~~H~~~h-~-----------------~k~~~C~~Cgk~F~~~   75 (96)
T 2ctd_A           15 VYAAGSLEEQWYLEIVDKGS-VSCPTCQAVGRKTIEGLKKHMENC-K-----------------QEMFTCHHCGKQLRSL   75 (96)
T ss_dssp             SSCTTCHHHHHHHHHHHTSC-EECTTTCSCEESSHHHHHHHHHHH-C-----------------CCCCCCSSSCCCCSSH
T ss_pred             CCCCchHHHHHHHHhcCCCC-cCCCCCCCCcccCHHHHHHHHHHH-C-----------------CCCeECCCCCCeeCCH
Confidence            45667788899999987755 9999999999 9999999999877 5                 4789999999999999


Q ss_pred             hHHHHH-HHHhhCCCCCccC
Q psy16578        137 HNLKQH-LKFECGVEPQFKC  155 (177)
Q Consensus       137 ~~l~~H-~~~h~~~~~~~~C  155 (177)
                      ..|..| +++|++ ++.|.+
T Consensus        76 ~~L~~H~~~~H~~-~p~~~~   94 (96)
T 2ctd_A           76 AGMKYHVMANHNS-LPSGPS   94 (96)
T ss_dssp             HHHHHHHHHHTCC-CSSCSC
T ss_pred             HHHHHHhHHhcCC-CCCCCC
Confidence            999999 888876 665544

>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.63  E-value=8.2e-17  Score=96.77  Aligned_cols=76  Identities=21%  Similarity=0.331  Sum_probs=62.7

Q ss_pred             ccChHHHHHHHHHHhCCCCceeCCCCccccc-cchHHHhHHHHhcCCCCCCCCccccccccCCCCceecCCccccccChh
Q psy16578         59 YLRQYTLNAHLRYECGKRPKFKCPHCNKKCH-QKCNLKSHIALKHDQLLAPLAPRSYRRNSQLNGSFICPKCSNRYVYKH  137 (177)
Q Consensus        59 f~~~~~l~~H~~~h~~~~~~~~C~~C~~~f~-~~~~l~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~C~~~f~~~~  137 (177)
                      +.....+..|++.|.+.++ |.|.+|++.|. ....|..|++.|++                .+++|.|..|++.|....
T Consensus         6 ~~~~~~~~~h~~~h~~~~~-~~C~~C~k~f~~~~~~L~~H~~~h~~----------------~~~~~~C~~C~k~F~~~~   68 (98)
T 2gqj_A            6 SGPGGPEEQWQRAIHERGE-AVCPTCNVVTRKTLVGLKKHMEVCQK----------------LQDALKCQHCRKQFKSKA   68 (98)
T ss_dssp             CCCCCSCSHHHHTTTTTSC-CCCTTTCCCCSSCSHHHHHHHHHHHH----------------HHHHHSCSSSCCCCSCHH
T ss_pred             CCCCCcHHHHHHHhccCCC-cCCCCCCCChhhhHHHHHHHHHHHcC----------------CCCCEECCCCCCccCCHH
Confidence            3444556788888887755 99999999999 99999999988764                257899999999999999


Q ss_pred             HHHHHHHHhhCCCC
Q psy16578        138 NLKQHLKFECGVEP  151 (177)
Q Consensus       138 ~l~~H~~~h~~~~~  151 (177)
                      .|..|+++|+++++
T Consensus        69 ~L~~H~~~h~~~kp   82 (98)
T 2gqj_A           69 GLNYHTMAEHSAKP   82 (98)
T ss_dssp             HHHHHHHHHSCSCS
T ss_pred             HHHHHHHHHcCCCC
Confidence            99999999998443

>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.62  E-value=1e-15  Score=87.80  Aligned_cols=63  Identities=27%  Similarity=0.575  Sum_probs=55.7

Q ss_pred             CCCCCCCCCccccCccchhccChHHHHHHHHHHhCCCCceeCCCCccccccchHHHhHHHHhcC
Q psy16578         40 SEDKPAGEDVFACPKCSKTYLRQYTLNAHLRYECGKRPKFKCPHCNKKCHQKCNLKSHIALKHD  103 (177)
Q Consensus        40 ~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~  103 (177)
                      ......++++|.|.+|++.|.....|..|++.|.+.++ |.|.+|++.|.....|..|++.|++
T Consensus         9 ~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~-~~C~~C~~~f~~~~~L~~H~~~H~~   71 (77)
T 2cot_A            9 SEWQQRERRRYKCDECGKSFSHSSDLSKHRRTHTGEKP-YKCDECGKAFIQRSHLIGHHRVHTG   71 (77)
T ss_dssp             CCSCCCCSCSSBCSSSCCBCSCHHHHHHHHTTTCCSCS-EECSSSCCEESSHHHHHHHGGGSCC
T ss_pred             CcCcCCCCCCEECCCCCcccCCHHHHHHHHHHcCCCcC-eeCCCCCCccCCHHHHHHHHHHhCC
Confidence            44455667889999999999999999999999988755 9999999999999999999977764

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.62  E-value=1.7e-16  Score=91.11  Aligned_cols=70  Identities=27%  Similarity=0.529  Sum_probs=44.9

Q ss_pred             HHHHHHHhCCCCceeCCCCccccccchHHHhHHHHhcCCCCCCCCccccccccCCCCceecCCccccccChhHHHHHHHH
Q psy16578         66 NAHLRYECGKRPKFKCPHCNKKCHQKCNLKSHIALKHDQLLAPLAPRSYRRNSQLNGSFICPKCSNRYVYKHNLKQHLKF  145 (177)
Q Consensus        66 ~~H~~~h~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~  145 (177)
                      ..|+++|.+.++ |.|.+|++.|.....|..|+..+|..               .+++|.|..|++.|.....|..|+++
T Consensus         4 ~~H~~~H~~~k~-~~C~~C~k~f~~~~~L~~H~~~~h~~---------------~~~~~~C~~C~~~f~~~~~L~~H~~~   67 (77)
T 2ct1_A            4 GSSGRTHSGEKP-YECYICHARFTQSGTMKMHILQKHTE---------------NVAKFHCPHCDTVIARKSDLGVHLRK   67 (77)
T ss_dssp             CCCCCCCSCCCS-EECTTTCCEESCHHHHHHHHHHHSSS---------------SCSSEECSSSSCEESSHHHHHHHHHH
T ss_pred             CccccccCCCCC-eECCCcCchhCCHHHHHHHHHHhcCC---------------CCCccCCCCCCCccCCHHHHHHHHHH
Confidence            345666665544 77777777777777777776544431               13567777777777777777777777


Q ss_pred             hhCCCC
Q psy16578        146 ECGVEP  151 (177)
Q Consensus       146 h~~~~~  151 (177)
                      +++.+.
T Consensus        68 ~H~~~~   73 (77)
T 2ct1_A           68 QHSYSG   73 (77)
T ss_dssp             TSCCSC
T ss_pred             hCCCCC
Confidence            666444

>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1

Probab=99.61  E-value=5.7e-16  Score=84.55  Aligned_cols=54  Identities=24%  Similarity=0.603  Sum_probs=49.1

Q ss_pred             CceecCCccccccChhHHHHHHHHhhCCCCCccCCCCcccccchhHHHHHHhhhc
Q psy16578        122 GSFICPKCSNRYVYKHNLKQHLKFECGVEPQFKCPYCDKRCKLKGNLMSHIALKH  176 (177)
Q Consensus       122 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C~~~f~~~~~l~~H~~~~h  176 (177)
                      ++|.|..|++.|.....|..|+++|++ +++|.|++|++.|...+.|.+|++..|
T Consensus         1 k~~~C~~C~~~f~~~~~l~~H~~~h~~-~~~~~C~~C~~~f~~~~~l~~H~~~~H   54 (60)
T 2adr_A            1 RSFVCEVCTRAFARQEHLKRHYRSHTN-EKPYPCGLCNRAFTRRDLLIRHAQKIH   54 (60)
T ss_dssp             CCBCCTTTCCCBSCHHHHHHHHHTTTS-SCSEECTTTCCEESSHHHHHHHHTTTS
T ss_pred             CcCcCCCCccccCCHHHHHHHHHHhCC-CCCccCCCCCCccCCHHHHHHHHHHHc
Confidence            479999999999999999999999988 566999999999999999999985443

>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} SCOP: g.37.1.1 g.37.1.1

Probab=99.61  E-value=3.3e-16  Score=88.93  Aligned_cols=59  Identities=22%  Similarity=0.583  Sum_probs=53.2

Q ss_pred             ccCCCCceecC--CccccccChhHHHHHHHHhhCCCCCccCCCCcccccchhHHHHHHhhhc
Q psy16578        117 NSQLNGSFICP--KCSNRYVYKHNLKQHLKFECGVEPQFKCPYCDKRCKLKGNLMSHIALKH  176 (177)
Q Consensus       117 ~~~~~~~~~C~--~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C~~~f~~~~~l~~H~~~~h  176 (177)
                      .+.++++|.|.  .|++.|.....|..|+++|++ +++|.|.+|++.|...+.|.+|+++|+
T Consensus        13 ~~~~~~~~~C~~~~C~k~f~~~~~l~~H~~~h~~-~~~~~C~~C~~~f~~~~~l~~H~~~Ht   73 (73)
T 1f2i_G           13 VVPKMRPYACPVESCDRRFSRSDELTRHIRIHTG-QKPFQCRICMRNFSRSDHLTTHIRTHT   73 (73)
T ss_dssp             CCCCCCCEECSSTTBCCEESSHHHHHHHHHHHHC-CCCEECTTTCCEESCHHHHHHHHTTCC
T ss_pred             cCCCCCccCCcCCCCCCccCCHHHHHHHHHhhCC-CCCeECCCCCchhCCHHHHHHHHHhcC
Confidence            34478899997  599999999999999999999 555999999999999999999999874

>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.61  E-value=3e-15  Score=87.55  Aligned_cols=77  Identities=19%  Similarity=0.384  Sum_probs=67.1

Q ss_pred             CCCCCCCCCccccCccchhccChHHHHHHHHHHhCCC---CceeCCCCccccccchHHHhHHHHhcCCCCCCCCcccccc
Q psy16578         40 SEDKPAGEDVFACPKCSKTYLRQYTLNAHLRYECGKR---PKFKCPHCNKKCHQKCNLKSHIALKHDQLLAPLAPRSYRR  116 (177)
Q Consensus        40 ~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~---~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~~~~~  116 (177)
                      ......++++|.|.+|++.|.....|..|++.++...   .+|.|.+|++.|.....|..|++.+++             
T Consensus         6 H~~~H~~~k~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~-------------   72 (86)
T 1x6h_A            6 SGRTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHADNCAG-------------   72 (86)
T ss_dssp             CSTTCCCCCCEECSSSSCEESSHHHHHHHHHHTTCSSCCCCCEECSSSCCEESCHHHHHHHHHHCCC-------------
T ss_pred             ccceecCCCCCcCCCCCCccCCHHHHHHHHHHhcCCcCCCcceECCCCCChhCCHHHHHHHHHHccC-------------
Confidence            4455677889999999999999999999999888764   569999999999999999999988875             


Q ss_pred             ccCCCCceecCCccccc
Q psy16578        117 NSQLNGSFICPKCSNRY  133 (177)
Q Consensus       117 ~~~~~~~~~C~~C~~~f  133 (177)
                          ++++.|..|+..+
T Consensus        73 ----~~~~~~~~~~~~~   85 (86)
T 1x6h_A           73 ----PDGVEGENSGPSS   85 (86)
T ss_dssp             ----CCSCCCCCCCCCC
T ss_pred             ----CCCcccCCCCCCC
Confidence                5788999888765

>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.59  E-value=4.6e-15  Score=83.45  Aligned_cols=64  Identities=30%  Similarity=0.563  Sum_probs=57.2

Q ss_pred             CCCCCccccCccchhccChHHHHHHHHHHhCCCCceeCCCCccccccchHHHhHHHHhcCCCCCC
Q psy16578         44 PAGEDVFACPKCSKTYLRQYTLNAHLRYECGKRPKFKCPHCNKKCHQKCNLKSHIALKHDQLLAP  108 (177)
Q Consensus        44 ~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~  108 (177)
                      ..++++|.|.+|++.|....+|..|++.|.+.++ |.|.+|++.|.....|..|++.+++..+.+
T Consensus         4 ~~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~-~~C~~C~~~f~~~~~L~~H~~~h~~~~p~p   67 (70)
T 1x5w_A            4 GSSGHPEKCSECSYSCSSKAALRIHERIHCTDRP-FKCNYCSFDTKQPSNLSKHMKKFHGDMSGP   67 (70)
T ss_dssp             CCCCCSEECSSSSCEESSHHHHHHHHGGGCCSCS-EECSSSSCEESSHHHHHHHHHHHHSSSCCS
T ss_pred             CCCCCCeECCCCCcccCCHHHHHHHHHHcCCCCC-EeCCCCCCccCCHHHHHHHHHHHhCCCCCC
Confidence            4567889999999999999999999999887755 999999999999999999999999865443

>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}

Probab=99.58  E-value=2.6e-15  Score=81.01  Aligned_cols=57  Identities=35%  Similarity=0.740  Sum_probs=49.8

Q ss_pred             CCCccccCccchhccChHHHHHHHHHHhCCCCceeCCCCccccccchHHHhHHHHhcC
Q psy16578         46 GEDVFACPKCSKTYLRQYTLNAHLRYECGKRPKFKCPHCNKKCHQKCNLKSHIALKHD  103 (177)
Q Consensus        46 ~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~  103 (177)
                      ++++|.|.+|++.|....+|..|++.|.+.++ |.|++|++.|.....|..|++.+|+
T Consensus         1 g~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~-~~C~~C~~~f~~~~~l~~H~~~hh~   57 (57)
T 3uk3_C            1 GSSSRECSYCGKFFRSNYYLNIHLRTHTGEKP-YKCEFCEYAAAQKTSLRYHLERHHK   57 (57)
T ss_dssp             ----CBCTTTCCBCSCHHHHHHHHHHHHCCCC-EECSSSSCEESSHHHHHHHHHHHC-
T ss_pred             CCCCccCCCCcchhCChHHHHHHHHHcCCCCC-cCCCCCcchhCCHHHHHHHHHHhcC
Confidence            35689999999999999999999999998866 9999999999999999999998874

>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=99.58  E-value=4.9e-15  Score=84.26  Aligned_cols=64  Identities=19%  Similarity=0.568  Sum_probs=55.4

Q ss_pred             CCCCCCCCCccccCccchhccChHHHHHHHHHHhCCCCceeCCCCccccccchHHHhHHHHhcCC
Q psy16578         40 SEDKPAGEDVFACPKCSKTYLRQYTLNAHLRYECGKRPKFKCPHCNKKCHQKCNLKSHIALKHDQ  104 (177)
Q Consensus        40 ~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~  104 (177)
                      ......++++|.|.+|++.|.....|..|++.|.+.++ |.|.+|++.|.....|..|++.|++.
T Consensus         8 ~~~~~~~~~~~~C~~C~k~f~~~~~l~~H~~~H~~~~~-~~C~~C~k~f~~~~~L~~H~~~H~~~   71 (74)
T 2lce_A            8 HSHMTHSDKPYKCDRCQASFRYKGNLASHKTVHTGEKP-YRCNICGAQFNRPANLKTHTRIHSGE   71 (74)
T ss_dssp             ---CCCCCCSBCCTTSSCCBSCHHHHHHHHHHHCCCCS-EECTTTCCEESCHHHHHHHHHHHCCS
T ss_pred             cccccCCCCCeECCCCCceeCCHHHHHHHHHHcCCCCC-EECCCCCchhCCHHHHHHHHHhcCCC
Confidence            34445667889999999999999999999999988755 99999999999999999999888764

>2lv2_A Insulinoma-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=99.58  E-value=3.6e-15  Score=86.74  Aligned_cols=61  Identities=23%  Similarity=0.435  Sum_probs=54.3

Q ss_pred             CCCCCCCccccCccchhccChHHHHHHHHHHhCCCCceeCCCCccccccchHHHhHHHHhcC
Q psy16578         42 DKPAGEDVFACPKCSKTYLRQYTLNAHLRYECGKRPKFKCPHCNKKCHQKCNLKSHIALKHD  103 (177)
Q Consensus        42 ~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~  103 (177)
                      ....+.++|.|.+|++.|....+|..|++.|++.++ |.|.+|++.|.....|..|++..|.
T Consensus        21 ~~~~~~~~h~C~~Cgk~F~~~~~L~~H~~~H~~~k~-~~C~~C~k~F~~~~~L~~H~~~~H~   81 (85)
T 2lv2_A           21 GLSASAECHLCPVCGESFASKGAQERHLRLLHAAQV-FPCKYCPATFYSSPGLTRHINKCHP   81 (85)
T ss_dssp             SSCCCCTTEECTTSCCEESSHHHHHHHHHTTSCSSS-EECTTSSCEESSHHHHHHHHHTTCT
T ss_pred             CCCCCCCCEECCCCCCCcCcHHHHhhhhhhccCCCc-cCCCCCCCEeCCHHHHHHhCcccCc
Confidence            344556779999999999999999999999998755 9999999999999999999977665

>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers, 4-stranded parallel/anti-parallel beta- sheet, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.58  E-value=3.5e-15  Score=89.78  Aligned_cols=73  Identities=14%  Similarity=0.202  Sum_probs=60.2

Q ss_pred             CCCCCCCCccccCccchhccChHHHHHHHHH-Hh--CCCCceeCCCCccccccchHHHhH-HHHhcCCCCCCCCcccccc
Q psy16578         41 EDKPAGEDVFACPKCSKTYLRQYTLNAHLRY-EC--GKRPKFKCPHCNKKCHQKCNLKSH-IALKHDQLLAPLAPRSYRR  116 (177)
Q Consensus        41 ~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~-h~--~~~~~~~C~~C~~~f~~~~~l~~H-~~~~~~~~~~~~~~~~~~~  116 (177)
                      .....++++|.|..|++.|.....|..|++. |.  ..++||.|.+||+.|.....|..| ++.|.              
T Consensus        10 ~~~~~gekpy~C~~Cgk~F~~~~~L~~H~r~~H~~~~~ekpf~C~~Cgk~F~~~~~L~~H~~r~Ht--------------   75 (102)
T 2ghf_A           10 QQNKKVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRYDALSEHNLKYHP--------------   75 (102)
T ss_dssp             TTCCCCCSSEECSSCSCEESCHHHHHHHHHHHCSSCCCSCCEEETTTTEEESSTHHHHTHHHHTST--------------
T ss_pred             cccCCCCcCcCCCCCCCccCCHHHHHHHHHhhCCCCCCCCCcCCCCCCcccCCHHHHHHHHHHhcC--------------
Confidence            3445678899999999999999999999985 63  234569999999999999999999 65544              


Q ss_pred             ccCCCCceecCCcc
Q psy16578        117 NSQLNGSFICPKCS  130 (177)
Q Consensus       117 ~~~~~~~~~C~~C~  130 (177)
                         +++||.|..+.
T Consensus        76 ---gekpy~C~~~~   86 (102)
T 2ghf_A           76 ---GEENFKLTMVK   86 (102)
T ss_dssp             ---TCCCEEEEECC
T ss_pred             ---CCCCeeCCccc
Confidence               57899997653

>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.56  E-value=1e-14  Score=82.48  Aligned_cols=63  Identities=29%  Similarity=0.618  Sum_probs=57.0

Q ss_pred             CCCCCCCCccccCccchhccChHHHHHHHHHHhCCCCceeCCCCccccccchHHHhHHHHhcCC
Q psy16578         41 EDKPAGEDVFACPKCSKTYLRQYTLNAHLRYECGKRPKFKCPHCNKKCHQKCNLKSHIALKHDQ  104 (177)
Q Consensus        41 ~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~  104 (177)
                      .....++++|.|.+|++.|.....|..|++.|.+.++ |.|.+|++.|.....|..|++.|++.
T Consensus         6 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~-~~C~~C~~~f~~~~~L~~H~~~H~~~   68 (72)
T 1x6e_A            6 SGIHSGEKPYGCVECGKAFSRSSILVQHQRVHTGEKP-YKCLECGKAFSQNSGLINHQRIHTSG   68 (72)
T ss_dssp             CCTTTTCCCEECSSSCCEESSHHHHHHHHHGGGCSCC-EECSSSCCEESSHHHHHHHHHHHHSS
T ss_pred             CcccCCCCCccCCCCCCccCCHHHHHHHHHhcCCCCC-eECCCCCcccCCHHHHHHHHHhcCCC
Confidence            4456778899999999999999999999999988755 99999999999999999999998864

>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}

Probab=99.55  E-value=3.5e-15  Score=93.99  Aligned_cols=82  Identities=17%  Similarity=0.302  Sum_probs=68.7

Q ss_pred             CCccccCccchhcc------ChHHHHHHHHHHhCCCCceeCCCCccccccchHHHhHHHHhcCCCCCCCCccccccccCC
Q psy16578         47 EDVFACPKCSKTYL------RQYTLNAHLRYECGKRPKFKCPHCNKKCHQKCNLKSHIALKHDQLLAPLAPRSYRRNSQL  120 (177)
Q Consensus        47 ~~~~~C~~C~~~f~------~~~~l~~H~~~h~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~~~~~~~~~  120 (177)
                      ++.+.|.+|+..|.      ....|..|+ .|++.+ ||.|.+|++.|.....|..|++.|                   
T Consensus        39 ~~~~~c~~~~~~~~~~~~~~~~~~l~~h~-~h~~~~-~~~C~~C~k~f~~~~~l~~H~~~H-------------------   97 (129)
T 2wbt_A           39 QKRLIRAIVKTLIHNPQLLDESSYLYRLL-ASKAIS-QFVCPLCLMPFSSSVSLKQHIRYT-------------------   97 (129)
T ss_dssp             HHHHHHHHHHHHHHCGGGTTTHHHHHHHH-HHHHHC-SEECTTTCCEESSHHHHHHHHHHT-------------------
T ss_pred             hCcccchhhhcccCCCcccCCHHHHHHHH-HhCCCC-CeECCCCCcccCCHhHHHHHHHHC-------------------
Confidence            34578999887776      556666666 577764 499999999999999999999765                   


Q ss_pred             CCceecCCccccccChhHHHHHHHHhhCC
Q psy16578        121 NGSFICPKCSNRYVYKHNLKQHLKFECGV  149 (177)
Q Consensus       121 ~~~~~C~~C~~~f~~~~~l~~H~~~h~~~  149 (177)
                      +++|.|..|++.|.....|..|+++|++.
T Consensus        98 ~~~~~C~~C~k~f~~~~~l~~H~~~h~~~  126 (129)
T 2wbt_A           98 EHTKVCPVCKKEFTSTDSALDHVCKKHNI  126 (129)
T ss_dssp             CCCCBCTTTCCBCSSHHHHHHHHHHTTCC
T ss_pred             CCCCCCCCCCcccCCHHHHHHHHHHHCCc
Confidence            26799999999999999999999999884

>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A

Probab=99.54  E-value=9.1e-15  Score=78.80  Aligned_cols=56  Identities=27%  Similarity=0.541  Sum_probs=51.0

Q ss_pred             ceeCCCCccccccchHHHhHHHHhcCCCCCCCCccccccccCCCCceecCCccccccChhHHHHHHHHhhCCC
Q psy16578         78 KFKCPHCNKKCHQKCNLKSHIALKHDQLLAPLAPRSYRRNSQLNGSFICPKCSNRYVYKHNLKQHLKFECGVE  150 (177)
Q Consensus        78 ~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~  150 (177)
                      ||.|.+|++.|.....|..|++.+++                 +++|.|..|++.|.....|..|+++|++++
T Consensus         1 p~~C~~C~~~f~~~~~l~~H~~~h~~-----------------~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k   56 (57)
T 1bbo_A            1 KYICEECGIRXKKPSMLKKHIRTHTD-----------------VRPYHCTYCNFSFKTKGNLTKHMKSKAHSK   56 (57)
T ss_dssp             CCBCTTTCCBCSSHHHHHHHHHHTSS-----------------CCCEECSSSSCEESSHHHHHHHHHSSSSCC
T ss_pred             CCcCCCCcCcCCCHHHHHHHHHhcCC-----------------CCCccCCCCCchhcCHHHHHHHHHHhcccC
Confidence            59999999999999999999987664                 588999999999999999999999998854

>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1

Probab=99.54  E-value=5.5e-15  Score=82.13  Aligned_cols=55  Identities=22%  Similarity=0.514  Sum_probs=31.4

Q ss_pred             eeCCCCccccccchHHHhHHHHhcCCCCCCCCccccccccCCCCceecCCccccccChhHHHHHHHHhhC
Q psy16578         79 FKCPHCNKKCHQKCNLKSHIALKHDQLLAPLAPRSYRRNSQLNGSFICPKCSNRYVYKHNLKQHLKFECG  148 (177)
Q Consensus        79 ~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~  148 (177)
                      |.|..|++.|.....|..|+..+|..               ++++|.|..|++.|.....|..|++.|++
T Consensus        11 ~~C~~C~k~f~~~~~l~~H~~~~H~~---------------~~~~~~C~~C~k~f~~~~~L~~H~~~~H~   65 (66)
T 2drp_A           11 YRCKVCSRVYTHISNFCRHYVTSHKR---------------NVKVYPCPFCFKEFTRKDNMTAHVKIIHK   65 (66)
T ss_dssp             EECTTTCCEESSHHHHHHHHHHHSSS---------------SCCCEECTTTCCEESCHHHHHHHHHHHTC
T ss_pred             eECCCCcchhCCHHHHHHHHHHHcCC---------------CCcCeECCCCCCccCCHHHHHHHHHHHcC
Confidence            66666666666666666665553310               34556666666666666666666665554

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.53  E-value=2.3e-14  Score=82.27  Aligned_cols=63  Identities=25%  Similarity=0.473  Sum_probs=55.7

Q ss_pred             CCCCCccccCccchhccChHHHHHHHHHHhC--CCCceeCCCCccccccchHHHhHHHHhcCCCC
Q psy16578         44 PAGEDVFACPKCSKTYLRQYTLNAHLRYECG--KRPKFKCPHCNKKCHQKCNLKSHIALKHDQLL  106 (177)
Q Consensus        44 ~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~--~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~  106 (177)
                      ..++++|.|.+|++.|.....|..|++.|.+  ..++|.|.+|++.|.....|..|++.+|....
T Consensus         2 h~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~~~~C~~C~k~f~~~~~L~~H~~~~H~~~~   66 (78)
T 2d9h_A            2 SSGSSGLQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSHPALL   66 (78)
T ss_dssp             CCSCCCEECSSSCCEESSHHHHHHHHHHHHHHTTTCCEECTTTCCEESSHHHHHHHHHHTSTTTS
T ss_pred             CCCCcCeECCCCCCeeCCHHHHHHHHHHhhccCCCcccCCCCCCchhCCHHHHHHHHHHhCCCCC
Confidence            4567899999999999999999999999986  24559999999999999999999988887543

>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.49  E-value=1.9e-17  Score=94.00  Aligned_cols=71  Identities=17%  Similarity=0.265  Sum_probs=59.9

Q ss_pred             hHHHHHHHHHHhCCCCceeCCCCccccccchHHHhHHHHhcCCCCCCCCccccccccCCCCceecCCccccccChhHHHH
Q psy16578         62 QYTLNAHLRYECGKRPKFKCPHCNKKCHQKCNLKSHIALKHDQLLAPLAPRSYRRNSQLNGSFICPKCSNRYVYKHNLKQ  141 (177)
Q Consensus        62 ~~~l~~H~~~h~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~  141 (177)
                      ...|..|++.|.+.++ |.|.+|++.|.....|..                        +++|.|..|++.|.....|..
T Consensus         3 ~~~l~~H~~~h~~~~~-~~C~~C~k~f~~~~~l~~------------------------~~~~~C~~C~~~f~~~~~l~~   57 (73)
T 2ctu_A            3 SGSSGKRQKIHLGDRS-QKCSKCGIIFIRRSTLSR------------------------RKTPMCEKCRKDSCQEAALNK   57 (73)
T ss_dssp             CCSCCCCCCCCCCCSE-EECSSSCCEEECCCCCCC------------------------SSSCCCHHHHHTCSCCCSSCC
T ss_pred             chhHHHHHHHhCCCCC-eeCCcccchhCCHHHhCc------------------------CCCCCCCCCChhhcCHHHHHH
Confidence            3467788888877654 999999999998876654                        478999999999999999999


Q ss_pred             HHHHhhCCCCCccCCCC
Q psy16578        142 HLKFECGVEPQFKCPYC  158 (177)
Q Consensus       142 H~~~h~~~~~~~~C~~C  158 (177)
                      |+++|++ +++|.|++|
T Consensus        58 H~~~H~~-~~~~~C~~C   73 (73)
T 2ctu_A           58 DEGNESG-KKTSGPSSG   73 (73)
T ss_dssp             CSSCCCC-CCCSSCCCC
T ss_pred             HHHhhcC-CCCCCCCCC
Confidence            9999988 556999988

>2eod_A TNF receptor-associated factor 4; zinc binding, NF-KB, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.49  E-value=1.7e-14  Score=80.22  Aligned_cols=54  Identities=19%  Similarity=0.405  Sum_probs=49.8

Q ss_pred             CCCceecCCccccccChhHHHHHHHHhhCCCCCccCC-CCcccccchhHHHHHHhhhc
Q psy16578        120 LNGSFICPKCSNRYVYKHNLKQHLKFECGVEPQFKCP-YCDKRCKLKGNLMSHIALKH  176 (177)
Q Consensus       120 ~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~-~C~~~f~~~~~l~~H~~~~h  176 (177)
                      ++++|.|..|++.|. ...|..|+++ ++ +++|.|+ +|++.|...+.|.+|+++|-
T Consensus         7 ~~~~~~C~~C~k~f~-~~~L~~H~~~-~~-~~p~~C~~~C~k~f~~~~~L~~H~~~hc   61 (66)
T 2eod_A            7 GKRTQPCTYCTKEFV-FDTIQSHQYQ-CP-RLPVACPNQCGVGTVAREDLPGHLKDSC   61 (66)
T ss_dssp             CCCEEECSSSCCEEE-HHHHHHHHHH-CS-SSEEECTTCCSCCEEETTTHHHHHHTTS
T ss_pred             CCCCeeccccCCccC-HHHHHHHHHH-cC-CcCccCCcccCcccccHHHHHHHHHhhc
Confidence            568999999999999 9999999999 66 6779999 99999999999999999873

>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible early growth response protein 1, TGFB-inducible early growth response protein 1; NMR {Homo sapiens}

Probab=99.47  E-value=8.4e-14  Score=78.64  Aligned_cols=57  Identities=30%  Similarity=0.603  Sum_probs=51.4

Q ss_pred             cCCCCceecCC--ccccccChhHHHHHHHHhhCCCCCccCCC--CcccccchhHHHHHHhhh
Q psy16578        118 SQLNGSFICPK--CSNRYVYKHNLKQHLKFECGVEPQFKCPY--CDKRCKLKGNLMSHIALK  175 (177)
Q Consensus       118 ~~~~~~~~C~~--C~~~f~~~~~l~~H~~~h~~~~~~~~C~~--C~~~f~~~~~l~~H~~~~  175 (177)
                      ....++|.|..  |++.|.....|..|+++|++ +++|.|.+  |++.|.....|.+|+++|
T Consensus        12 ~~~~~~~~C~~~~C~k~f~~~~~L~~H~~~H~~-~~~~~C~~~~C~k~f~~~~~l~~H~~~H   72 (72)
T 2epa_A           12 SSRIRSHICSHPGCGKTYFKSSHLKAHTRTHTG-EKPFSCSWKGCERRFARSDELSRHRRTH   72 (72)
T ss_dssp             CCCCCCEECSSTTTCCEESSHHHHHHHHHHHSS-SCSEECCCTTCCCEESSHHHHHHHTTTC
T ss_pred             ccccCceeCCCCCCccccCCHHHHHHHHHhcCC-CCCccCCCCCCCcccCCHHHHHhHhhcC
Confidence            34568899988  99999999999999999998 56699975  999999999999999876

>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.47  E-value=8.5e-14  Score=82.88  Aligned_cols=70  Identities=16%  Similarity=0.196  Sum_probs=52.8

Q ss_pred             eeCCCCccccccchHHHhHHHHhcCCCCCCCCccccccccCCCCceecCCccccccChhHHHHHHHHhhCCCCCccCCC
Q psy16578         79 FKCPHCNKKCHQKCNLKSHIALKHDQLLAPLAPRSYRRNSQLNGSFICPKCSNRYVYKHNLKQHLKFECGVEPQFKCPY  157 (177)
Q Consensus        79 ~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~  157 (177)
                      |.|..|++.|.....|..|++.+|........        ..-..|.|..|++.|.....|..|+++|++ +++|.|..
T Consensus        26 ~~C~~C~k~f~~~~~L~~H~~~~H~~~~~~~~--------~~c~~~~C~~C~k~f~~~~~L~~H~~~H~~-~k~~~C~~   95 (95)
T 2ej4_A           26 RPKKSCDRTFSTMHELVTHVTMEHVGGPEQNN--------HVCYWEECPREGKSFKAKYKLVNHIRVHTG-EKSGPSSG   95 (95)
T ss_dssp             SSCCCCCCCCSSHHHHHHHHHHTTTCCTTCSC--------CCCCCTTCSSTTCCCSSHHHHHHHHHHHHT-CCCCSSCC
T ss_pred             CcccccccccCCHHHHHHHHHHhccCCCCCCc--------cceeccCCCCCCcccCCHHHHHHHHHhcCC-CCCCCCCC
Confidence            78999999999999999999874432100000        000128999999999999999999999999 56699963

>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1

Probab=99.45  E-value=1.2e-13  Score=75.07  Aligned_cols=55  Identities=27%  Similarity=0.609  Sum_probs=49.5

Q ss_pred             CccccCccchhccChHHHHHHHHHHhCCCCceeCCCCccccccchHHHhHHHHhcC
Q psy16578         48 DVFACPKCSKTYLRQYTLNAHLRYECGKRPKFKCPHCNKKCHQKCNLKSHIALKHD  103 (177)
Q Consensus        48 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~  103 (177)
                      ++|.|.+|++.|.....|..|++.|.+.++ |.|++|++.|.....|..|+...|.
T Consensus         1 k~~~C~~C~~~f~~~~~l~~H~~~h~~~~~-~~C~~C~~~f~~~~~l~~H~~~~H~   55 (60)
T 2adr_A            1 RSFVCEVCTRAFARQEHLKRHYRSHTNEKP-YPCGLCNRAFTRRDLLIRHAQKIHS   55 (60)
T ss_dssp             CCBCCTTTCCCBSCHHHHHHHHHTTTSSCS-EECTTTCCEESSHHHHHHHHTTTSC
T ss_pred             CcCcCCCCccccCCHHHHHHHHHHhCCCCC-ccCCCCCCccCCHHHHHHHHHHHcC
Confidence            369999999999999999999999988755 9999999999999999999855554

>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} SCOP: g.37.1.1 g.37.1.1

Probab=99.40  E-value=6e-13  Score=75.25  Aligned_cols=61  Identities=26%  Similarity=0.609  Sum_probs=53.4

Q ss_pred             CCCCCCCCCccccC--ccchhccChHHHHHHHHHHhCCCCceeCCCCccccccchHHHhHHHHh
Q psy16578         40 SEDKPAGEDVFACP--KCSKTYLRQYTLNAHLRYECGKRPKFKCPHCNKKCHQKCNLKSHIALK  101 (177)
Q Consensus        40 ~~~~~~~~~~~~C~--~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C~~~f~~~~~l~~H~~~~  101 (177)
                      ......++++|.|.  .|++.|.....|..|++.|.+.++ |.|++|++.|.....|..|++.|
T Consensus        10 ~~~~~~~~~~~~C~~~~C~k~f~~~~~l~~H~~~h~~~~~-~~C~~C~~~f~~~~~l~~H~~~H   72 (73)
T 1f2i_G           10 LNYVVPKMRPYACPVESCDRRFSRSDELTRHIRIHTGQKP-FQCRICMRNFSRSDHLTTHIRTH   72 (73)
T ss_dssp             TSCCCCCCCCEECSSTTBCCEESSHHHHHHHHHHHHCCCC-EECTTTCCEESCHHHHHHHHTTC
T ss_pred             hhccCCCCCccCCcCCCCCCccCCHHHHHHHHHhhCCCCC-eECCCCCchhCCHHHHHHHHHhc
Confidence            34445667889997  599999999999999999998866 99999999999999999999654

>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=99.39  E-value=3.7e-13  Score=71.59  Aligned_cols=47  Identities=19%  Similarity=0.431  Sum_probs=42.0

Q ss_pred             ccCCCCceecCCccccccChhHHHHHHH-HhhCCCCCccCCCCcccccc
Q psy16578        117 NSQLNGSFICPKCSNRYVYKHNLKQHLK-FECGVEPQFKCPYCDKRCKL  164 (177)
Q Consensus       117 ~~~~~~~~~C~~C~~~f~~~~~l~~H~~-~h~~~~~~~~C~~C~~~f~~  164 (177)
                      .+.++++|.|..|++.|.....|..|++ +|.+ +++|.|.+|++.|++
T Consensus         6 ~~~~~k~~~C~~C~k~f~~~~~L~~H~~~~H~~-~k~~~C~~C~k~F~~   53 (54)
T 2eps_A            6 SGSVGKPYICQSCGKGFSRPDHLNGHIKQVHTS-ERPHKCQVWVSGPSS   53 (54)
T ss_dssp             CCCSSCCEECSSSCCEESSHHHHHHHHHHTSCC-CCCCCSSSSCCSSCC
T ss_pred             CCCCCCCeECCCCCcccCCHHHHHHHHHHhcCC-CCCccCCCCCCCCCC
Confidence            3457899999999999999999999997 7887 666999999999986

>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.37  E-value=8.8e-13  Score=78.41  Aligned_cols=55  Identities=27%  Similarity=0.417  Sum_probs=49.7

Q ss_pred             CceecCCccccccChhHHHHHHHH-hhCCCCC--------ccCCCCcccccchhHHHHHHhhhcC
Q psy16578        122 GSFICPKCSNRYVYKHNLKQHLKF-ECGVEPQ--------FKCPYCDKRCKLKGNLMSHIALKHT  177 (177)
Q Consensus       122 ~~~~C~~C~~~f~~~~~l~~H~~~-h~~~~~~--------~~C~~C~~~f~~~~~l~~H~~~~h~  177 (177)
                      ..|.|..|++.|.....|..|+++ |.+ +++        |.|.+|++.|....+|.+|+++|++
T Consensus        24 ~~~~C~~C~k~f~~~~~L~~H~~~~H~~-~~~~~~~~c~~~~C~~C~k~f~~~~~L~~H~~~H~~   87 (95)
T 2ej4_A           24 LSRPKKSCDRTFSTMHELVTHVTMEHVG-GPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHTG   87 (95)
T ss_dssp             SSSSCCCCCCCCSSHHHHHHHHHHTTTC-CTTCSCCCCCCTTCSSTTCCCSSHHHHHHHHHHHHT
T ss_pred             CCCcccccccccCCHHHHHHHHHHhccC-CCCCCccceeccCCCCCCcccCCHHHHHHHHHhcCC
Confidence            457899999999999999999998 666 665        9999999999999999999999875

>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible early growth response protein 1, TGFB-inducible early growth response protein 1; NMR {Homo sapiens}

Probab=99.30  E-value=4.8e-12  Score=71.29  Aligned_cols=60  Identities=27%  Similarity=0.595  Sum_probs=51.5

Q ss_pred             CCCCCCCCCccccCc--cchhccChHHHHHHHHHHhCCCCceeCCC--CccccccchHHHhHHHH
Q psy16578         40 SEDKPAGEDVFACPK--CSKTYLRQYTLNAHLRYECGKRPKFKCPH--CNKKCHQKCNLKSHIAL  100 (177)
Q Consensus        40 ~~~~~~~~~~~~C~~--C~~~f~~~~~l~~H~~~h~~~~~~~~C~~--C~~~f~~~~~l~~H~~~  100 (177)
                      ........++|.|.+  |++.|.....|..|++.|.+.++ |.|.+  |++.|.....|..|++.
T Consensus         8 ~~~~~~~~~~~~C~~~~C~k~f~~~~~L~~H~~~H~~~~~-~~C~~~~C~k~f~~~~~l~~H~~~   71 (72)
T 2epa_A            8 PQIDSSRIRSHICSHPGCGKTYFKSSHLKAHTRTHTGEKP-FSCSWKGCERRFARSDELSRHRRT   71 (72)
T ss_dssp             CCCCCCCCCCEECSSTTTCCEESSHHHHHHHHHHHSSSCS-EECCCTTCCCEESSHHHHHHHTTT
T ss_pred             CCCCccccCceeCCCCCCccccCCHHHHHHHHHhcCCCCC-ccCCCCCCCcccCCHHHHHhHhhc
Confidence            344455667899999  99999999999999999988755 99965  99999999999999854

>2eod_A TNF receptor-associated factor 4; zinc binding, NF-KB, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.29  E-value=3.7e-12  Score=70.54  Aligned_cols=57  Identities=21%  Similarity=0.521  Sum_probs=50.1

Q ss_pred             CCCCCccccCccchhccChHHHHHHHHHHhCCCCceeCC-CCccccccchHHHhHHHHhcC
Q psy16578         44 PAGEDVFACPKCSKTYLRQYTLNAHLRYECGKRPKFKCP-HCNKKCHQKCNLKSHIALKHD  103 (177)
Q Consensus        44 ~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~-~C~~~f~~~~~l~~H~~~~~~  103 (177)
                      .-+.++|.|..|++.|. ..+|..|++. .+. +||.|+ +|++.|.....|..|++.|.+
T Consensus         5 ~C~~~~~~C~~C~k~f~-~~~L~~H~~~-~~~-~p~~C~~~C~k~f~~~~~L~~H~~~hc~   62 (66)
T 2eod_A            5 SSGKRTQPCTYCTKEFV-FDTIQSHQYQ-CPR-LPVACPNQCGVGTVAREDLPGHLKDSCN   62 (66)
T ss_dssp             CCCCCEEECSSSCCEEE-HHHHHHHHHH-CSS-SEEECTTCCSCCEEETTTHHHHHHTTSS
T ss_pred             cCCCCCeeccccCCccC-HHHHHHHHHH-cCC-cCccCCcccCcccccHHHHHHHHHhhcc
Confidence            34567899999999999 9999999998 555 569999 999999999999999987655

>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=99.28  E-value=2.3e-12  Score=66.76  Aligned_cols=43  Identities=14%  Similarity=0.252  Sum_probs=38.5

Q ss_pred             ccCCCCceecCCccccccChhHHHHHHHHhhCCCCCccCCCCcc
Q psy16578        117 NSQLNGSFICPKCSNRYVYKHNLKQHLKFECGVEPQFKCPYCDK  160 (177)
Q Consensus       117 ~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C~~  160 (177)
                      .+..+++|.|..|++.|.....|..|+++|++ +++|.|.+|++
T Consensus         6 ~~~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~-~k~~~C~~C~k   48 (48)
T 2epr_A            6 SGRTRKQVACEICGKIFRDVYHLNRHKLSHSG-EKPYSSGPSSG   48 (48)
T ss_dssp             CCCCCCSEEETTTTEEESSHHHHHHHGGGSCS-CCCCCSCCCCC
T ss_pred             CCCCCcCeeCCCCCcccCCHHHHHHHHHhcCC-CCCccCCCCCC
Confidence            34567899999999999999999999999998 56699999985

>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=99.27  E-value=4.4e-12  Score=64.67  Aligned_cols=42  Identities=21%  Similarity=0.392  Sum_probs=37.9

Q ss_pred             ccCCCCceecCCccccccChhHHHHHHHHhhCCCCCccCCCCc
Q psy16578        117 NSQLNGSFICPKCSNRYVYKHNLKQHLKFECGVEPQFKCPYCD  159 (177)
Q Consensus       117 ~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C~  159 (177)
                      .+.++++|.|..|++.|.....|..|+++|++ +++|.|++||
T Consensus         4 ~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~-~~~~~C~~cg   45 (45)
T 2epq_A            4 GSSGEKPYSCPVCGLRFKRKDRMSYHVRSHDG-SVGKSGPSSG   45 (45)
T ss_dssp             CCSSCCSSEETTTTEECSCHHHHHHHHHHHSC-CCCCCCCCCC
T ss_pred             CcCCCCCCcCCCCCcccCCHHHHHHHHHHccC-CCCCCCcCCC
Confidence            35578999999999999999999999999998 5669999996

>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.25  E-value=9.2e-12  Score=63.76  Aligned_cols=41  Identities=17%  Similarity=0.240  Sum_probs=36.9

Q ss_pred             ccCCCCceecCCccccccChhHHHHHHHHhhCCCCCccCCCC
Q psy16578        117 NSQLNGSFICPKCSNRYVYKHNLKQHLKFECGVEPQFKCPYC  158 (177)
Q Consensus       117 ~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C  158 (177)
                      .+.++++|.|..|++.|...+.|..|+++|++ +++|.|.+|
T Consensus         6 ~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~-~k~~~C~~C   46 (46)
T 2eoo_A            6 SGSGERPYGCNECGKNFGRHSHLIEHLKRHFR-EKSSGPSSG   46 (46)
T ss_dssp             CCSCCCCEECSSSCCEESSHHHHHHHHHHHHS-TTSSCCSCC
T ss_pred             CCCCCCCEEccccCcccCCHHHHHHHHHHHcC-CCCCCCCCC
Confidence            44578999999999999999999999999998 566999988

>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.25  E-value=1e-11  Score=63.58  Aligned_cols=41  Identities=17%  Similarity=0.300  Sum_probs=37.1

Q ss_pred             ccCCCCceecCCccccccChhHHHHHHHHhhCCCCCccCCCC
Q psy16578        117 NSQLNGSFICPKCSNRYVYKHNLKQHLKFECGVEPQFKCPYC  158 (177)
Q Consensus       117 ~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C  158 (177)
                      .+.++++|.|..|++.|.....|..|+++|++ +++|.|.+|
T Consensus         6 ~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~-~~~~~C~~C   46 (46)
T 2em8_A            6 SGSGEKPYKCVECGKGYKRRLDLDFHQRVHTG-EKLSGPSSG   46 (46)
T ss_dssp             CCCSCCSEECSSSCCEESSHHHHHHHHHHHHC-CCCCCSCCC
T ss_pred             CCCCCCCeECcccCchhCCHHHHHHHHHHHcC-CCCCCCCCC
Confidence            45578999999999999999999999999999 566999988

>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.25  E-value=1e-11  Score=63.53  Aligned_cols=41  Identities=17%  Similarity=0.309  Sum_probs=36.9

Q ss_pred             ccCCCCceecCCccccccChhHHHHHHHHhhCCCCCccCCCC
Q psy16578        117 NSQLNGSFICPKCSNRYVYKHNLKQHLKFECGVEPQFKCPYC  158 (177)
Q Consensus       117 ~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C  158 (177)
                      .+.++++|.|..|++.|.....|..|+++|++ +++|.|.+|
T Consensus         6 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~-~k~~~C~~C   46 (46)
T 2emm_A            6 SGTGERPHKCNECGKSFIQSAHLIQHQRIHTG-EKPSGPSSG   46 (46)
T ss_dssp             CSSCCCSEECSSSCCEESSHHHHHHHHHHHSC-CCTTSSSCC
T ss_pred             CcCCCCCeeCCCCChhhCCHHHHHHHHHHhCC-CCCCCCCCC
Confidence            34568999999999999999999999999998 566999998

>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ena_A 2en4_A

Probab=99.25  E-value=9.4e-12  Score=63.73  Aligned_cols=41  Identities=20%  Similarity=0.331  Sum_probs=37.0

Q ss_pred             ccCCCCceecCCccccccChhHHHHHHHHhhCCCCCccCCCC
Q psy16578        117 NSQLNGSFICPKCSNRYVYKHNLKQHLKFECGVEPQFKCPYC  158 (177)
Q Consensus       117 ~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C  158 (177)
                      .+.++++|.|..|++.|.....|..|+++|++ +++|.|.+|
T Consensus         6 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~-~k~~~C~~C   46 (46)
T 2ely_A            6 SGTGEKPFKCVECGKGFSRRSALNVHHKLHTG-EKPSGPSSG   46 (46)
T ss_dssp             CCCCCCSBCCSSSCCCBSSTTHHHHHHHHHSC-CSSCSCCCC
T ss_pred             CCCCCCCcccCccCcccCCHHHHHHHHHHcCC-CCCCCCCCC
Confidence            44578999999999999999999999999998 666999988

>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.25  E-value=1.1e-11  Score=63.46  Aligned_cols=41  Identities=17%  Similarity=0.290  Sum_probs=36.8

Q ss_pred             ccCCCCceecCCccccccChhHHHHHHHHhhCCCCCccCCCC
Q psy16578        117 NSQLNGSFICPKCSNRYVYKHNLKQHLKFECGVEPQFKCPYC  158 (177)
Q Consensus       117 ~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C  158 (177)
                      .+.++++|.|..|++.|.....|..|+++|++ +++|.|++|
T Consensus         6 ~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~-~k~~~C~~C   46 (46)
T 2emy_A            6 SGTGENPYECHECGKAFSRKYQLISHQRTHAG-EKPSGPSSG   46 (46)
T ss_dssp             CCCSSCCEECSSSCCEESSHHHHHHHHHHHTT-SCCSCSSCC
T ss_pred             CCCCCcCcCCCCCCcccCcHHHHHHHHHHcCC-CCCCCCCCC
Confidence            34568999999999999999999999999998 566999988

>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=99.25  E-value=7.8e-12  Score=66.36  Aligned_cols=49  Identities=20%  Similarity=0.392  Sum_probs=41.9

Q ss_pred             CCCCCCCCccccCccchhccChHHHHHHHH-HHhCCCCceeCCCCcccccc
Q psy16578         41 EDKPAGEDVFACPKCSKTYLRQYTLNAHLR-YECGKRPKFKCPHCNKKCHQ   90 (177)
Q Consensus        41 ~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~-~h~~~~~~~~C~~C~~~f~~   90 (177)
                      .....++++|.|.+|++.|.....|..|++ .|.+.+ +|.|.+|++.|.+
T Consensus         4 ~~~~~~~k~~~C~~C~k~f~~~~~L~~H~~~~H~~~k-~~~C~~C~k~F~~   53 (54)
T 2eps_A            4 GSSGSVGKPYICQSCGKGFSRPDHLNGHIKQVHTSER-PHKCQVWVSGPSS   53 (54)
T ss_dssp             CCCCCSSCCEECSSSCCEESSHHHHHHHHHHTSCCCC-CCCSSSSCCSSCC
T ss_pred             CCCCCCCCCeECCCCCcccCCHHHHHHHHHHhcCCCC-CccCCCCCCCCCC
Confidence            344567788999999999999999999997 677664 5999999999975

>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.25  E-value=1e-11  Score=62.92  Aligned_cols=41  Identities=20%  Similarity=0.184  Sum_probs=36.7

Q ss_pred             ccCCCCceecCCccccccChhHHHHHHHHhhCCCCCccCCCC
Q psy16578        117 NSQLNGSFICPKCSNRYVYKHNLKQHLKFECGVEPQFKCPYC  158 (177)
Q Consensus       117 ~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C  158 (177)
                      .+.++++|.|..|++.|...+.|..|+++|++ +++|.|.+|
T Consensus         4 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~-~~~~~C~~C   44 (44)
T 2emx_A            4 GSSGEKPFGCSCCEKAFSSKSYLLVHQQTHAE-EKPSGPSSG   44 (44)
T ss_dssp             CCSSCCCEECSSSSCEESSHHHHHHHHHHHTS-SCSCSCCCC
T ss_pred             CcCCCcCccCCCCCcccCCHHHHHHHHHHhCC-CCCCCCCCC
Confidence            34578999999999999999999999999998 566999988

>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ysv_A

Probab=99.24  E-value=1.1e-11  Score=63.46  Aligned_cols=41  Identities=17%  Similarity=0.308  Sum_probs=36.8

Q ss_pred             ccCCCCceecCCccccccChhHHHHHHHHhhCCCCCccCCCC
Q psy16578        117 NSQLNGSFICPKCSNRYVYKHNLKQHLKFECGVEPQFKCPYC  158 (177)
Q Consensus       117 ~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C  158 (177)
                      .+.++++|.|..|++.|.....|..|+++|++ +++|.|++|
T Consensus         6 ~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~-~k~~~C~~C   46 (46)
T 2emk_A            6 SGTGEKPYECKECGKAFSQTTHLIQHQRVHTG-EKPSGPSSG   46 (46)
T ss_dssp             CCSSSCSCBCSSSCCBCSCHHHHHHHHHHHSS-CCCSSCCCC
T ss_pred             ccCCCCceECCCCCchhCCHHHHHHHHHHcCC-CCCCCCCCC
Confidence            34578999999999999999999999999998 566999988

>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.24  E-value=1.1e-11  Score=63.51  Aligned_cols=41  Identities=22%  Similarity=0.389  Sum_probs=36.8

Q ss_pred             ccCCCCceecCCccccccChhHHHHHHHHhhCCCCCccCCCC
Q psy16578        117 NSQLNGSFICPKCSNRYVYKHNLKQHLKFECGVEPQFKCPYC  158 (177)
Q Consensus       117 ~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C  158 (177)
                      .+.++++|.|..|++.|.....|..|+++|++ +++|.|++|
T Consensus         6 ~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~-~k~~~C~~c   46 (46)
T 2emh_A            6 SGTGERPYICTVCGKAFTDRSNLIKHQKIHTG-EKPSGPSSG   46 (46)
T ss_dssp             SCSCCCSEECTTTCCEESSHHHHHHHHHHHHC-SSCSSSCCC
T ss_pred             CCCCCCCcCCCCCCchhCCHHHHHHHHHhcCC-CCCCCCCCC
Confidence            34568999999999999999999999999999 566999988

>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.24  E-value=1.3e-11  Score=63.20  Aligned_cols=41  Identities=12%  Similarity=0.282  Sum_probs=36.9

Q ss_pred             ccCCCCceecCCccccccChhHHHHHHHHhhCCCCCccCCCC
Q psy16578        117 NSQLNGSFICPKCSNRYVYKHNLKQHLKFECGVEPQFKCPYC  158 (177)
Q Consensus       117 ~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C  158 (177)
                      .+.++++|.|..|++.|.....|..|+++|++ +++|.|++|
T Consensus         6 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~-~~~~~C~~C   46 (46)
T 2ytd_A            6 SGSGEKPYKCSECGKAFHRHTHLNEHRRIHTG-YRPSGPSSG   46 (46)
T ss_dssp             CSCCCCSEECSSSCCEESSHHHHHHHHHHHTC-CCSSCSSCC
T ss_pred             ccCCCcCeECCCCCCeeCChHHHHHHHHHcCC-CCCCCCCCC
Confidence            34568899999999999999999999999998 566999988

>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.24  E-value=1.1e-11  Score=63.40  Aligned_cols=41  Identities=15%  Similarity=0.331  Sum_probs=36.9

Q ss_pred             ccCCCCceecCCccccccChhHHHHHHHHhhCCCCCccCCCC
Q psy16578        117 NSQLNGSFICPKCSNRYVYKHNLKQHLKFECGVEPQFKCPYC  158 (177)
Q Consensus       117 ~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C  158 (177)
                      .+.++++|.|..|++.|.....|..|+++|++ +++|.|++|
T Consensus         6 ~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~-~~~~~C~~c   46 (46)
T 2ytk_A            6 SGSGEKPYKCNECGKVFTQNSHLTNHWRIHTG-EKPSGPSSG   46 (46)
T ss_dssp             CSSSSCSEECSSSCCEESSHHHHHHHHHHHSS-SSCSSCCCC
T ss_pred             cCCCCCCEeCCcCCCccCCHHHHHHHHHHHCC-CCCCCCCCC
Confidence            34578999999999999999999999999998 566999998

>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.24  E-value=1e-11  Score=63.60  Aligned_cols=41  Identities=12%  Similarity=0.246  Sum_probs=37.0

Q ss_pred             ccCCCCceecCCccccccChhHHHHHHHHhhCCCCCccCCCC
Q psy16578        117 NSQLNGSFICPKCSNRYVYKHNLKQHLKFECGVEPQFKCPYC  158 (177)
Q Consensus       117 ~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C  158 (177)
                      .+.++++|.|..|++.|.....|..|+++|++ +++|.|.+|
T Consensus         6 ~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~-~~~~~C~~C   46 (46)
T 2ytm_A            6 SGTGEKPYKCMECGKAFGDNSSCTQHQRLHTG-QRPSGPSSG   46 (46)
T ss_dssp             CCSSCCSSSBTTTTBCCSSHHHHHHHHHHHHS-CCCCCCCCC
T ss_pred             CCCCCCCcCCCCCCchhCCHHHHHHHHHHcCC-CCCCCCCCC
Confidence            45578999999999999999999999999999 566999988

>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.24  E-value=8.5e-12  Score=63.88  Aligned_cols=41  Identities=15%  Similarity=0.288  Sum_probs=36.9

Q ss_pred             ccCCCCceecCCccccccChhHHHHHHHHhhCCCCCccCCCC
Q psy16578        117 NSQLNGSFICPKCSNRYVYKHNLKQHLKFECGVEPQFKCPYC  158 (177)
Q Consensus       117 ~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C  158 (177)
                      .+.++++|.|..|++.|...+.|..|+++|++ +++|.|.+|
T Consensus         6 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~-~k~~~C~~C   46 (46)
T 2ene_A            6 SGTGEKPYKCNECGKVFRHNSYLSRHQRIHTG-EKPSGPSSG   46 (46)
T ss_dssp             SCCCSSSEECSSSCCEESSHHHHHHHHTTTCC-CCCCSCCCC
T ss_pred             CCCCCCCeECCCCCchhCChHHHHHHHhhcCC-CCCCCCCCC
Confidence            34578999999999999999999999999988 566999988

>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.24  E-value=1.2e-11  Score=63.29  Aligned_cols=41  Identities=15%  Similarity=0.235  Sum_probs=36.8

Q ss_pred             ccCCCCceecCCccccccChhHHHHHHHHhhCCCCCccCCCC
Q psy16578        117 NSQLNGSFICPKCSNRYVYKHNLKQHLKFECGVEPQFKCPYC  158 (177)
Q Consensus       117 ~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C  158 (177)
                      .+.++++|.|..|++.|.....|..|+++|++ +++|.|.+|
T Consensus         6 ~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~-~k~~~C~~C   46 (46)
T 2eoq_A            6 SGTGEKPFKCDICGKSFCGRSRLNRHSMVHTA-EKPSGPSSG   46 (46)
T ss_dssp             CSSSSCSCCCSSSCCCCSSHHHHHHHHHHTTC-CCSSSCCCC
T ss_pred             CCCCCCCcCCCcCCchhCCHHHHHHHHHHcCC-CCCCCCCCC
Confidence            34578899999999999999999999999998 566999988

>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.24  E-value=1.1e-11  Score=63.50  Aligned_cols=41  Identities=15%  Similarity=0.244  Sum_probs=36.9

Q ss_pred             ccCCCCceecCCccccccChhHHHHHHHHhhCCCCCccCCCC
Q psy16578        117 NSQLNGSFICPKCSNRYVYKHNLKQHLKFECGVEPQFKCPYC  158 (177)
Q Consensus       117 ~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C  158 (177)
                      .+.++++|.|..|++.|.....|..|+++|++ +++|.|.+|
T Consensus         6 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~-~~~~~C~~C   46 (46)
T 2enc_A            6 SGSGEKPFKCEECGKGFYTNSQCYSHQRSHSG-EKPSGPSSG   46 (46)
T ss_dssp             CCCCCCSEECSSSCCEESSHHHHHHHHHHSCC-SSCCSSCCC
T ss_pred             CCCCCCCcCCCCCCCcCCChHHHHHHHHHhCC-CCCCCCCCC
Confidence            45578999999999999999999999999988 566999988

>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.24  E-value=1.1e-11  Score=63.48  Aligned_cols=41  Identities=17%  Similarity=0.305  Sum_probs=36.8

Q ss_pred             ccCCCCceecCCccccccChhHHHHHHHHhhCCCCCccCCCC
Q psy16578        117 NSQLNGSFICPKCSNRYVYKHNLKQHLKFECGVEPQFKCPYC  158 (177)
Q Consensus       117 ~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C  158 (177)
                      .+.++++|.|..|++.|.....|..|+++|++ +++|.|++|
T Consensus         6 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~-~k~~~C~~c   46 (46)
T 2ep2_A            6 SGTGEKPYECSICGKSFTKKSQLHVHQQIHTG-EKPSGPSSG   46 (46)
T ss_dssp             CSSCCCSEECSSSCCEESSHHHHHHHHHTTSS-CCSCCSCCC
T ss_pred             CCCCCcCcCCCCCCcccCCHHHHHHHHHHhCC-CCCCCCCCC
Confidence            34568999999999999999999999999998 566999987

>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.24  E-value=1.3e-11  Score=63.19  Aligned_cols=41  Identities=15%  Similarity=0.276  Sum_probs=36.9

Q ss_pred             ccCCCCceecCCccccccChhHHHHHHHHhhCCCCCccCCCC
Q psy16578        117 NSQLNGSFICPKCSNRYVYKHNLKQHLKFECGVEPQFKCPYC  158 (177)
Q Consensus       117 ~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C  158 (177)
                      .+.++++|.|..|++.|.....|..|+++|++ +++|.|.+|
T Consensus         6 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~-~k~~~C~~C   46 (46)
T 2emp_A            6 SGTGVKPYMCNECGKAFSVYSSLTTHQVIHTG-EKPSGPSSG   46 (46)
T ss_dssp             CSSCCCSEECSSSCCEESCHHHHHHHHHHHHC-CSCCSCCCC
T ss_pred             ccCCCcCeECCCCCchhCCHHHHHHHHHHcCC-CCCCCCCCC
Confidence            34568999999999999999999999999999 566999988

>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.24  E-value=1.1e-11  Score=63.48  Aligned_cols=41  Identities=17%  Similarity=0.265  Sum_probs=37.0

Q ss_pred             ccCCCCceecCCccccccChhHHHHHHHHhhCCCCCccCCCC
Q psy16578        117 NSQLNGSFICPKCSNRYVYKHNLKQHLKFECGVEPQFKCPYC  158 (177)
Q Consensus       117 ~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C  158 (177)
                      .+.++++|.|..|++.|.....|..|+++|++ +++|.|.+|
T Consensus         6 ~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~-~k~~~C~~C   46 (46)
T 2en6_A            6 SGSGEKPYGCNECGKTFSQKSILSAHQRTHTG-EKPSGPSSG   46 (46)
T ss_dssp             CCCSSCCEEETTTTEEESSHHHHHHHHHHHSS-CCCSSSCCC
T ss_pred             ccCCCcCeECCCCCcccCchHHHHHHHHHcCC-CCCCCCCCC
Confidence            45578999999999999999999999999998 566999988

>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.24  E-value=9.5e-12  Score=63.71  Aligned_cols=41  Identities=20%  Similarity=0.387  Sum_probs=37.0

Q ss_pred             ccCCCCceecCCccccccChhHHHHHHHHhhCCCCCccCCCC
Q psy16578        117 NSQLNGSFICPKCSNRYVYKHNLKQHLKFECGVEPQFKCPYC  158 (177)
Q Consensus       117 ~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C  158 (177)
                      .+.++++|.|..|++.|.....|..|+++|++ +++|.|.+|
T Consensus         6 ~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~-~~~~~C~~C   46 (46)
T 2elz_A            6 SGSVEKPYKCEDCGKGYNRRLNLDMHQRVHMG-EKTSGPSSG   46 (46)
T ss_dssp             CCCCCSSCBCSSSCCBCSSHHHHHHHGGGGGS-CCCCCSCCC
T ss_pred             CCCCCCCeeCcccCchhCCHHHHHHHHHhcCC-CCCCCCCCC
Confidence            45578999999999999999999999999998 566999988

>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens}

Probab=99.24  E-value=1.1e-11  Score=63.52  Aligned_cols=42  Identities=14%  Similarity=0.207  Sum_probs=37.4

Q ss_pred             cccCCCCceecCCccccccChhHHHHHHHHhhCCCCCccCCCC
Q psy16578        116 RNSQLNGSFICPKCSNRYVYKHNLKQHLKFECGVEPQFKCPYC  158 (177)
Q Consensus       116 ~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C  158 (177)
                      ..+.++++|.|..|++.|.....|..|+++|++ +++|.|.+|
T Consensus         5 ~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~-~~~~~C~~C   46 (46)
T 2el6_A            5 SSGAGVNPYKCSQCEKSFSGKLRLLVHQRMHTR-EKPSGPSSG   46 (46)
T ss_dssp             CSSCCCCSEECSSSSCEESSHHHHHHHHGGGCC-SSCCSCCCC
T ss_pred             CCCCCCCCeECCCCCcccCCHHHHHHHHHHcCC-CCCCCCCCC
Confidence            345578999999999999999999999999998 566999988

>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.23  E-value=1.3e-11  Score=63.13  Aligned_cols=41  Identities=17%  Similarity=0.353  Sum_probs=36.6

Q ss_pred             ccCCCCceecCCccccccChhHHHHHHHHhhCCCCCccCCCC
Q psy16578        117 NSQLNGSFICPKCSNRYVYKHNLKQHLKFECGVEPQFKCPYC  158 (177)
Q Consensus       117 ~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C  158 (177)
                      .+.++++|.|..|++.|.....|..|+++|++ +++|.|++|
T Consensus         6 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~-~k~~~C~~c   46 (46)
T 2ytj_A            6 SGTGEKPYICAECGKAFTIRSNLIKHQKIHTK-QKPSGPSSG   46 (46)
T ss_dssp             TTSSCCSEECSSSCCEESSHHHHHHHHHHTSC-CCCSSCSCC
T ss_pred             CCCCCcCeECCCCChhhCCHHHHHHHHHHcCC-CCCCCCCCC
Confidence            34468899999999999999999999999998 566999987

>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.23  E-value=1.2e-11  Score=63.28  Aligned_cols=41  Identities=12%  Similarity=0.296  Sum_probs=36.8

Q ss_pred             ccCCCCceecCCccccccChhHHHHHHHHhhCCCCCccCCCC
Q psy16578        117 NSQLNGSFICPKCSNRYVYKHNLKQHLKFECGVEPQFKCPYC  158 (177)
Q Consensus       117 ~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C  158 (177)
                      .+.++++|.|..|++.|.....|..|+++|++ +++|.|.+|
T Consensus         6 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~-~~~~~C~~C   46 (46)
T 2eml_A            6 SGTGEKPYECSVCGKAFSHRQSLSVHQRIHSG-KKPSGPSSG   46 (46)
T ss_dssp             CCSSCCSEECSSSCCEESSHHHHHHHHGGGSS-CCCSCSSCC
T ss_pred             CcCCCCCeeCCCcCCccCCHHHHHHHHHHhcC-CCCCCCCCC
Confidence            34578999999999999999999999999998 566999988

>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.23  E-value=1.4e-11  Score=63.03  Aligned_cols=41  Identities=20%  Similarity=0.400  Sum_probs=36.8

Q ss_pred             ccCCCCceecCCccccccChhHHHHHHHHhhCCCCCccCCCC
Q psy16578        117 NSQLNGSFICPKCSNRYVYKHNLKQHLKFECGVEPQFKCPYC  158 (177)
Q Consensus       117 ~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C  158 (177)
                      .+.++++|.|..|++.|.....|..|+++|++ +++|.|.+|
T Consensus         6 ~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~-~~~~~C~~C   46 (46)
T 2eov_A            6 SGTGEKPYKCSDCGKSFTWKSRLRIHQKCHTG-ERHSGPSSG   46 (46)
T ss_dssp             CCSSCCSCBCSSSCCBCSSHHHHHHHHHHHSC-CSSCCSCCC
T ss_pred             CCCCCCCccCCccChhhCCHHHHHHHHHhcCC-CCCCCCCCC
Confidence            34568899999999999999999999999998 566999988

>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.23  E-value=9e-12  Score=63.79  Aligned_cols=41  Identities=22%  Similarity=0.347  Sum_probs=36.8

Q ss_pred             ccCCCCceecCCccccccChhHHHHHHHHhhCCCCCccCCCC
Q psy16578        117 NSQLNGSFICPKCSNRYVYKHNLKQHLKFECGVEPQFKCPYC  158 (177)
Q Consensus       117 ~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C  158 (177)
                      .+.++++|.|..|++.|.....|..|+++|++ +++|.|.+|
T Consensus         6 ~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~-~k~~~C~~c   46 (46)
T 2emf_A            6 SGTGGKHFECTECGKAFTRKSTLSMHQKIHTG-EKPSGPSSG   46 (46)
T ss_dssp             SSSSSCCEECSSSCCEESCHHHHHHHGGGTSC-SSCSCCCCC
T ss_pred             ccCCCCCeECCCCCchhCCHHHHHHHHHHhCC-CCCCCCCCC
Confidence            34578999999999999999999999999998 566999987

>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.23  E-value=9.6e-12  Score=63.70  Aligned_cols=41  Identities=17%  Similarity=0.288  Sum_probs=36.9

Q ss_pred             ccCCCCceecCCccccccChhHHHHHHHHhhCCCCCccCCCC
Q psy16578        117 NSQLNGSFICPKCSNRYVYKHNLKQHLKFECGVEPQFKCPYC  158 (177)
Q Consensus       117 ~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C  158 (177)
                      .+.++++|.|..|++.|.....|..|+++|++ +++|.|.+|
T Consensus         6 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~-~k~~~C~~C   46 (46)
T 2ytq_A            6 SGAGEKPYGCSECGKAFSSKSYLIIHMRTHSG-EKPSGPSSG   46 (46)
T ss_dssp             CSSCCCSCBCSSSCCBCSCHHHHHHHHTTTCC-SCSSCCCCC
T ss_pred             CcCCCCCcCCCccChhhCChHHHHHHHHHhCC-CCCCCCCCC
Confidence            45578999999999999999999999999988 566999988

>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.23  E-value=1e-11  Score=63.52  Aligned_cols=41  Identities=15%  Similarity=0.255  Sum_probs=36.8

Q ss_pred             ccCCCCceecCCccccccChhHHHHHHHHhhCCCCCccCCCC
Q psy16578        117 NSQLNGSFICPKCSNRYVYKHNLKQHLKFECGVEPQFKCPYC  158 (177)
Q Consensus       117 ~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C  158 (177)
                      .+.++++|.|..|++.|.....|..|+++|++ +++|.|.+|
T Consensus         6 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~-~~~~~C~~C   46 (46)
T 2eq4_A            6 SGTGEKLYNCKECGKSFSRAPCLLKHERLHSG-EKPSGPSSG   46 (46)
T ss_dssp             CSSCCCCCCBTTTTBCCSCHHHHHHHHHHCCS-SSCCCCCCC
T ss_pred             cCCCCCCeECCCCCCccCchHHHHHHHHhcCC-CCCCCCCCC
Confidence            34578999999999999999999999999998 566999988

>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A

Probab=99.23  E-value=1.3e-11  Score=63.21  Aligned_cols=41  Identities=20%  Similarity=0.325  Sum_probs=36.8

Q ss_pred             ccCCCCceecCCccccccChhHHHHHHHHhhCCCCCccCCCC
Q psy16578        117 NSQLNGSFICPKCSNRYVYKHNLKQHLKFECGVEPQFKCPYC  158 (177)
Q Consensus       117 ~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C  158 (177)
                      .+.++++|.|..|++.|.....|..|+++|++ +++|.|++|
T Consensus         6 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~-~k~~~C~~c   46 (46)
T 2ema_A            6 SGTGEKRYKCNECGKVFSRNSQLSQHQKIHTG-EKPSGPSSG   46 (46)
T ss_dssp             SCTTSCCEECSSSCCEESSHHHHHHHHTGGGC-CCCCSSSCC
T ss_pred             CCCCCcCcCCCCCcchhCCHHHHHHHHHhcCC-CCCCCCCCC
Confidence            34568999999999999999999999999999 566999987

>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.23  E-value=1e-11  Score=63.61  Aligned_cols=41  Identities=22%  Similarity=0.371  Sum_probs=36.7

Q ss_pred             ccCCCCceecCCccccccChhHHHHHHHHhhCCCCCccCCCC
Q psy16578        117 NSQLNGSFICPKCSNRYVYKHNLKQHLKFECGVEPQFKCPYC  158 (177)
Q Consensus       117 ~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C  158 (177)
                      .+.++++|.|..|++.|.....|..|+++|++ +++|.|++|
T Consensus         6 ~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~-~~~~~C~~C   46 (46)
T 2em5_A            6 SGSSTKSHQCHECGRGFTLKSHLNQHQRIHTG-EKPSGPSSG   46 (46)
T ss_dssp             CCCCSCSEECSSSCCEESSHHHHHHHHTTTSC-SCCSSCCCC
T ss_pred             CCCCCCCeECCcCCCccCCHHHHHHHHHHhCC-CCCCCCCCC
Confidence            34568899999999999999999999999988 566999988

>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.23  E-value=1e-11  Score=63.55  Aligned_cols=41  Identities=15%  Similarity=0.332  Sum_probs=36.8

Q ss_pred             ccCCCCceecCCccccccChhHHHHHHHHhhCCCCCccCCCC
Q psy16578        117 NSQLNGSFICPKCSNRYVYKHNLKQHLKFECGVEPQFKCPYC  158 (177)
Q Consensus       117 ~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C  158 (177)
                      .+.++++|.|..|++.|.....|..|+++|++ +++|.|.+|
T Consensus         6 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~-~k~~~C~~C   46 (46)
T 2em7_A            6 SGTGEKPYKCEECGKGFICRRDLYTHHMVHTG-EKPSGPSSG   46 (46)
T ss_dssp             SSSCCCSEECSSSCCEESCHHHHHHHGGGGTT-CCCSSTTCC
T ss_pred             CCCCCcCccCCCccchhCCHHHHHHHHHHhCC-CCCCCCCCC
Confidence            44568899999999999999999999999998 666999988

>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.23  E-value=1.1e-11  Score=63.52  Aligned_cols=41  Identities=20%  Similarity=0.292  Sum_probs=36.8

Q ss_pred             ccCCCCceecCCccccccChhHHHHHHHHhhCCCCCccCCCC
Q psy16578        117 NSQLNGSFICPKCSNRYVYKHNLKQHLKFECGVEPQFKCPYC  158 (177)
Q Consensus       117 ~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C  158 (177)
                      .+.++++|.|..|++.|.....|..|+++|++ +++|.|++|
T Consensus         6 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~-~k~~~C~~C   46 (46)
T 2epz_A            6 SGTGEKPFDCIDCGKAFSDHIGLNQHRRIHTG-EKPSGPSSG   46 (46)
T ss_dssp             SCCCCCSBCCTTTCCCBSSHHHHHHHHTTTTT-CCCCSSCCC
T ss_pred             CcCCCCCeECCCCCceeCCHHHHHHHHHHhCC-CCCCCCCCC
Confidence            44578999999999999999999999999998 566999988

>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.22  E-value=1.4e-11  Score=63.01  Aligned_cols=41  Identities=15%  Similarity=0.319  Sum_probs=36.6

Q ss_pred             ccCCCCceecCCccccccChhHHHHHHHHhhCCCCCccCCCC
Q psy16578        117 NSQLNGSFICPKCSNRYVYKHNLKQHLKFECGVEPQFKCPYC  158 (177)
Q Consensus       117 ~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C  158 (177)
                      .+.++++|.|..|++.|.....|..|+++|++ +++|.|.+|
T Consensus         6 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~-~~~~~C~~C   46 (46)
T 2eme_A            6 SGSGEKPYVCDYCGKAFGLSAELVRHQRIHTG-EKPSGPSSG   46 (46)
T ss_dssp             TTCCCCSEECSSSCCEESSHHHHHHHHGGGCC-CSCCSSCCC
T ss_pred             CCCCCCCeECCCCChhhCCHHHHHHHHHhcCC-CCCCCCCCC
Confidence            34567899999999999999999999999998 566999988

>2yso_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.22  E-value=1.5e-11  Score=62.90  Aligned_cols=41  Identities=15%  Similarity=0.225  Sum_probs=36.8

Q ss_pred             ccCCCCceecCCccccccChhHHHHHHHHhhCCCCCccCCCC
Q psy16578        117 NSQLNGSFICPKCSNRYVYKHNLKQHLKFECGVEPQFKCPYC  158 (177)
Q Consensus       117 ~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C  158 (177)
                      .+.++++|.|..|++.|.....|..|+++|++ +++|.|.+|
T Consensus         6 ~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~-~k~~~C~~C   46 (46)
T 2yso_A            6 SGSREKSHQCRECGEIFFQYVSLIEHQVLHMG-QKNSGPSSG   46 (46)
T ss_dssp             CSSCCCCEECTTTCCEESSHHHHHHHHHHHSC-CSCCCTTCC
T ss_pred             ccCCCCCEEccccChhhCCHHHHHHHHHHhCC-CCCCCCCCC
Confidence            44578899999999999999999999999998 566999988

>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.22  E-value=1.1e-11  Score=63.44  Aligned_cols=41  Identities=15%  Similarity=0.267  Sum_probs=36.8

Q ss_pred             ccCCCCceecCCccccccChhHHHHHHHHhhCCCCCccCCCC
Q psy16578        117 NSQLNGSFICPKCSNRYVYKHNLKQHLKFECGVEPQFKCPYC  158 (177)
Q Consensus       117 ~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C  158 (177)
                      .+.++++|.|..|++.|.....|..|+++|++ +++|.|.+|
T Consensus         6 ~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~-~k~~~C~~c   46 (46)
T 2eq0_A            6 SGTGEKPYKCHECGKVFRRNSHLARHQLIHTG-EKPSGPSSG   46 (46)
T ss_dssp             CTTCCCCEECTTTCCEESSHHHHHHHHTTTCC-CCCSCCSCC
T ss_pred             CCCCCCCeECCCCCchhCCHHHHHHHHHHcCC-CCCCCCCCC
Confidence            34568999999999999999999999999998 566999998

>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.22  E-value=1.1e-11  Score=63.52  Aligned_cols=41  Identities=15%  Similarity=0.289  Sum_probs=36.8

Q ss_pred             ccCCCCceecCCccccccChhHHHHHHHHhhCCCCCccCCCC
Q psy16578        117 NSQLNGSFICPKCSNRYVYKHNLKQHLKFECGVEPQFKCPYC  158 (177)
Q Consensus       117 ~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C  158 (177)
                      .+.++++|.|..|++.|.....|..|+++|++ +++|.|.+|
T Consensus         6 ~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~-~k~~~C~~C   46 (46)
T 2ytn_A            6 SGTGKKPYKCNECGKVFTQNSHLARHRGIHTG-EKPSGPSSG   46 (46)
T ss_dssp             CCSCCSSCBCTTTCCBCSSHHHHHHHGGGTSC-CCCCSCCCC
T ss_pred             CCCCCcCeECCCCCCeeCCHHHHHHHhhhcCC-CCCCCCCCC
Confidence            34578999999999999999999999999998 566999988

>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.22  E-value=1.2e-11  Score=63.32  Aligned_cols=41  Identities=12%  Similarity=0.274  Sum_probs=36.8

Q ss_pred             ccCCCCceecCCccccccChhHHHHHHHHhhCCCCCccCCCC
Q psy16578        117 NSQLNGSFICPKCSNRYVYKHNLKQHLKFECGVEPQFKCPYC  158 (177)
Q Consensus       117 ~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C  158 (177)
                      .+.++++|.|..|++.|.....|..|+++|++ +++|.|++|
T Consensus         6 ~H~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~-~~~~~C~~C   46 (46)
T 2eoe_A            6 SGTGEKPYKCNECGKVFTQNSHLANHQRIHTG-VKPSGPSSG   46 (46)
T ss_dssp             CCCCCCSSEETTTTEECSSHHHHHHHHGGGSC-CCSCSSCCC
T ss_pred             CCCCCCCeECCCcChhhCCHHHHHHHHHHcCC-CCCCCCCCC
Confidence            34568899999999999999999999999998 566999988

>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.22  E-value=1.5e-11  Score=62.96  Aligned_cols=41  Identities=12%  Similarity=0.254  Sum_probs=36.7

Q ss_pred             ccCCCCceecCCccccccChhHHHHHHHHhhCCCCCccCCCC
Q psy16578        117 NSQLNGSFICPKCSNRYVYKHNLKQHLKFECGVEPQFKCPYC  158 (177)
Q Consensus       117 ~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C  158 (177)
                      .+.++++|.|..|++.|.....|..|+++|++ +++|.|.+|
T Consensus         6 ~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~-~k~~~C~~C   46 (46)
T 2epw_A            6 SGTGEKPCKCTECGKAFCWKSQLIMHQRTHVD-DKHSGPSSG   46 (46)
T ss_dssp             CCCCCCSEECSSSCCEESSSHHHHHHHHHCCS-CCCSCCCCC
T ss_pred             cCCCCCCeeCCCCCCccCCHHHHHHHHHHhCC-CCCCCCCCC
Confidence            34568899999999999999999999999988 566999988

>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.22  E-value=1.3e-11  Score=63.21  Aligned_cols=41  Identities=12%  Similarity=0.277  Sum_probs=36.9

Q ss_pred             ccCCCCceecCCccccccChhHHHHHHHHhhCCCCCccCCCC
Q psy16578        117 NSQLNGSFICPKCSNRYVYKHNLKQHLKFECGVEPQFKCPYC  158 (177)
Q Consensus       117 ~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C  158 (177)
                      .+.++++|.|..|++.|.....|..|+++|++ +++|.|.+|
T Consensus         6 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~-~~~~~C~~C   46 (46)
T 2yu8_A            6 SGTGEKPYKCNECGKVFTQNSHLARHRRVHTG-GKPSGPSSG   46 (46)
T ss_dssp             CCCCCSSEECSSSCCEESSSHHHHHHTHHHHS-CCCSCSCCC
T ss_pred             CCCCCCCeECCcCCchhCCHHHHHHHHHhcCC-CCCCCCCCC
Confidence            34578999999999999999999999999999 566999988

>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A

Probab=99.21  E-value=1.2e-11  Score=63.36  Aligned_cols=41  Identities=15%  Similarity=0.221  Sum_probs=36.7

Q ss_pred             ccCCCCceecCCccccccChhHHHHHHHHhhCCCCCccCCCC
Q psy16578        117 NSQLNGSFICPKCSNRYVYKHNLKQHLKFECGVEPQFKCPYC  158 (177)
Q Consensus       117 ~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C  158 (177)
                      .+.++++|.|..|++.|.....|..|+++|++ +++|.|++|
T Consensus         6 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~-~k~~~C~~C   46 (46)
T 2el4_A            6 SGTGVKPYGCSQCAKTFSLKSQLIVHQRSHTG-VKPSGPSSG   46 (46)
T ss_dssp             CSCCCCSEECSSSSCEESSHHHHHHHGGGSSS-CCCSCCTTC
T ss_pred             CCCCCCceECCCCCchhCCHHHHHHHHHHhCC-CCCCCCCCC
Confidence            34568999999999999999999999999998 566999988

>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.21  E-value=9.2e-12  Score=63.76  Aligned_cols=42  Identities=14%  Similarity=0.198  Sum_probs=37.5

Q ss_pred             cccCCCCceecCCccccccChhHHHHHHHHhhCCCCCccCCCC
Q psy16578        116 RNSQLNGSFICPKCSNRYVYKHNLKQHLKFECGVEPQFKCPYC  158 (177)
Q Consensus       116 ~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C  158 (177)
                      ..+.++++|.|..|++.|.....|..|+++|++ +++|.|.+|
T Consensus         5 ~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~-~k~~~C~~C   46 (46)
T 2ytt_A            5 SSGEGEKPYQCSECGKSFSGSYRLTQHWITHTR-EKPSGPSSG   46 (46)
T ss_dssp             SSCSCCCTTCCSSSCCCCSSHHHHHHHHTHHHH-CCCCSCCCC
T ss_pred             CCCCCCCCeeCCCCCcccCCHHHHHHHHHHcCC-CCCCCCCCC
Confidence            345678999999999999999999999999998 566999988

>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.21  E-value=1.1e-11  Score=63.45  Aligned_cols=41  Identities=27%  Similarity=0.378  Sum_probs=36.9

Q ss_pred             ccCCCCceecCCccccccChhHHHHHHHHhhCCCCCccCCCC
Q psy16578        117 NSQLNGSFICPKCSNRYVYKHNLKQHLKFECGVEPQFKCPYC  158 (177)
Q Consensus       117 ~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C  158 (177)
                      .+.++++|.|..|++.|.....|..|+++|++ +++|.|.+|
T Consensus         6 ~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~-~~~~~C~~C   46 (46)
T 2ysp_A            6 SGTGEKPYKCEKCGKGYNSKFNLDMHQKVHTG-ERPSGPSSG   46 (46)
T ss_dssp             CCSSCCSEEETTTTEEESCHHHHHHHHTTSCS-CCSSCCSCC
T ss_pred             CCCCCCCeECCCCCCccCCHHHHHHHHHhhCC-CCCCCCCCC
Confidence            44578999999999999999999999999998 566999988

>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A

Probab=99.21  E-value=1.5e-11  Score=62.92  Aligned_cols=41  Identities=15%  Similarity=0.317  Sum_probs=36.8

Q ss_pred             ccCCCCceecCCccccccChhHHHHHHHHhhCCCCCccCCCC
Q psy16578        117 NSQLNGSFICPKCSNRYVYKHNLKQHLKFECGVEPQFKCPYC  158 (177)
Q Consensus       117 ~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C  158 (177)
                      .+.++++|.|..|++.|.....|..|+++|++ +++|.|.+|
T Consensus         6 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~-~~~~~C~~C   46 (46)
T 2em9_A            6 SGTGEKPYNCKECGKSFRWASCLLKHQRVHSG-EKPSGPSSG   46 (46)
T ss_dssp             SCCCCCSEECSSSCCEESSHHHHHHHGGGGTS-CCCCSTTCC
T ss_pred             CCCCCcCeECCccccccCChHHHHHHHHHhCC-CCCCCCCCC
Confidence            34568999999999999999999999999998 566999988

>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.21  E-value=1.4e-11  Score=63.06  Aligned_cols=42  Identities=17%  Similarity=0.326  Sum_probs=37.4

Q ss_pred             cccCCCCceecCCccccccChhHHHHHHHHhhCCCCCccCCCC
Q psy16578        116 RNSQLNGSFICPKCSNRYVYKHNLKQHLKFECGVEPQFKCPYC  158 (177)
Q Consensus       116 ~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C  158 (177)
                      ..+.++++|.|..|++.|.....|..|+++|++ +++|.|.+|
T Consensus         5 ~~h~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~-~k~~~C~~C   46 (46)
T 2ep0_A            5 SSGTGEKPYKCDVCHKSFRYGSSLTVHQRIHTG-EKPSGPSSG   46 (46)
T ss_dssp             CSSTTCCSEECSSSCCEESSHHHHHHHHTTTSS-SCCCSCCCC
T ss_pred             CCCCCCCCeeCcccCcccCChHHHHHHHHHhCC-CCCCCCCCC
Confidence            345578999999999999999999999999998 566999988

>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.21  E-value=1.5e-11  Score=62.95  Aligned_cols=41  Identities=15%  Similarity=0.295  Sum_probs=36.6

Q ss_pred             ccCCCCceecCCccccccChhHHHHHHHHhhCCCCCccCCCC
Q psy16578        117 NSQLNGSFICPKCSNRYVYKHNLKQHLKFECGVEPQFKCPYC  158 (177)
Q Consensus       117 ~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C  158 (177)
                      .+.++++|.|..|++.|.....|..|+++|++ +++|.|++|
T Consensus         6 ~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~-~k~~~C~~C   46 (46)
T 2eop_A            6 SGTGEKPHECRECGKSFSFNSQLIVHQRIHTG-ENPSGPSSG   46 (46)
T ss_dssp             SCCCCCSCBCTTTCCBCSSHHHHHHHHTTTTT-SCCSCCCCC
T ss_pred             ccCCCCCeeCCCCCchhCCHHHHHHHHHHcCC-CCCCCCCCC
Confidence            34568899999999999999999999999988 566999988

>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens}

Probab=99.20  E-value=1.4e-11  Score=63.09  Aligned_cols=41  Identities=15%  Similarity=0.250  Sum_probs=36.6

Q ss_pred             ccCCCCceecCCccccccChhHHHHHHHHhhCCCCCccCCCC
Q psy16578        117 NSQLNGSFICPKCSNRYVYKHNLKQHLKFECGVEPQFKCPYC  158 (177)
Q Consensus       117 ~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C  158 (177)
                      .+.++++|.|..|++.|.....|..|+++|++ +++|.|++|
T Consensus         6 ~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~-~~~~~C~~C   46 (46)
T 2em0_A            6 SGMGEKTWKCRECDMCFSQASSLRLHQNVHVG-EKPSGPSSG   46 (46)
T ss_dssp             CSCCCCCCCCSSSCCCCSSHHHHHHHGGGGSS-SSCSCSSCC
T ss_pred             ccCCCcCeECCCCCcccCCHHHHHHHHHHcCC-CCCcCCCCC
Confidence            34568999999999999999999999999988 566999988

>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.20  E-value=1.3e-11  Score=63.20  Aligned_cols=41  Identities=15%  Similarity=0.319  Sum_probs=36.8

Q ss_pred             ccCCCCceecCCccccccChhHHHHHHHHhhCCCCCccCCCC
Q psy16578        117 NSQLNGSFICPKCSNRYVYKHNLKQHLKFECGVEPQFKCPYC  158 (177)
Q Consensus       117 ~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C  158 (177)
                      .+.++++|.|..|++.|.....|..|+++|++ +++|.|.+|
T Consensus         6 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~-~~~~~C~~C   46 (46)
T 2ytr_A            6 SGTGEKPYKCNECGKAFSQTSKLARHQRIHTG-EKPSGPSSG   46 (46)
T ss_dssp             CCSSCCTTCCTTTCCCCSSHHHHHHHHTTTTT-CSCCCSCCC
T ss_pred             CCCCCcCcCCCCCCCccCCHHHHHHHHHhcCC-CCCCCCCCC
Confidence            34578999999999999999999999999998 566999988

>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.20  E-value=1.7e-11  Score=62.69  Aligned_cols=41  Identities=20%  Similarity=0.342  Sum_probs=36.8

Q ss_pred             ccCCCCceecCCccccccChhHHHHHHHHhhCCCCCccCCCC
Q psy16578        117 NSQLNGSFICPKCSNRYVYKHNLKQHLKFECGVEPQFKCPYC  158 (177)
Q Consensus       117 ~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C  158 (177)
                      .+.++++|.|..|++.|.....|..|+++|++ +++|.|..|
T Consensus         6 ~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~-~k~~~C~~C   46 (46)
T 2en8_A            6 SGSGEKSHTCDECGKNFCYISALRIHQRVHMG-EKCSGPSSG   46 (46)
T ss_dssp             CCCCCSSEECTTTCCEESSHHHHHHHHTTTCC-SCSSCCSCC
T ss_pred             cCCCCCCeECCCcCcccCCHHHHHHHHHHhCC-CCCCCCCCC
Confidence            34568999999999999999999999999998 566999988

>1yui_A GAGA-factor; complex (DNA-binding protein/DNA), chromatin remodeling, DNA binding protein/DNA complex; HET: DNA; NMR {Drosophila melanogaster} SCOP: g.37.1.1 PDB: 1yuj_A*

Probab=99.20  E-value=2.1e-12  Score=68.64  Aligned_cols=47  Identities=21%  Similarity=0.302  Sum_probs=38.8

Q ss_pred             cccccChhHHHHHHHHhhCCCCCccCCCCcccccchhHHHHHHhhhcC
Q psy16578        130 SNRYVYKHNLKQHLKFECGVEPQFKCPYCDKRCKLKGNLMSHIALKHT  177 (177)
Q Consensus       130 ~~~f~~~~~l~~H~~~h~~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~  177 (177)
                      ++.|.....|..|+++|++ +++|.|.+|++.|...++|.+|+++|+|
T Consensus         3 ~k~~~~~~~l~~h~~~H~~-~k~~~C~~C~k~f~~~~~L~~H~~~H~~   49 (54)
T 1yui_A            3 AKRAKHPPGTEKPRSRSQS-EQPATCPICYAVIRQSRNLRRHLELRHF   49 (54)
T ss_dssp             CCCCSCSSCCCCCHHHHTS-SCCEECTTTCCEESSHHHHHHHHHHHTT
T ss_pred             ccccCCCcchhhHHHhcCC-CCCccCCCCCcccCCHHHHHHHHHHhcc
Confidence            3567777888888888888 5559999999999999999999988864

>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.19  E-value=1e-11  Score=63.53  Aligned_cols=41  Identities=22%  Similarity=0.361  Sum_probs=36.8

Q ss_pred             ccCCCCceecCCccccccChhHHHHHHHHhhCCCCCccCCCC
Q psy16578        117 NSQLNGSFICPKCSNRYVYKHNLKQHLKFECGVEPQFKCPYC  158 (177)
Q Consensus       117 ~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C  158 (177)
                      .+.++++|.|..|++.|.....|..|+++|++ +++|.|.+|
T Consensus         6 ~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~-~k~~~C~~C   46 (46)
T 2ytg_A            6 SGTGEKPFKCGECGKSYNQRVHLTQHQRVHTG-EKPSGPSSG   46 (46)
T ss_dssp             CCSSCCSEECTTTCCEESSSHHHHTTGGGGSS-CCSSCSCCC
T ss_pred             CCCCCCCeECCCCCcccCCHHHHHHHHHHcCC-CCCCCCCCC
Confidence            34568999999999999999999999999998 566999988

>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.19  E-value=1.7e-11  Score=62.73  Aligned_cols=41  Identities=20%  Similarity=0.386  Sum_probs=36.7

Q ss_pred             ccCCCCceecCCccccccChhHHHHHHHHhhCCCCCccCCCC
Q psy16578        117 NSQLNGSFICPKCSNRYVYKHNLKQHLKFECGVEPQFKCPYC  158 (177)
Q Consensus       117 ~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C  158 (177)
                      .+.++++|.|..|++.|.....|..|+++|++ +++|.|.+|
T Consensus         6 ~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~-~~~~~C~~C   46 (46)
T 2en1_A            6 SGSGEKPFKCEECGKRFTQNSQLHSHQRVHTG-EKPSGPSSG   46 (46)
T ss_dssp             CCCCCCSEEETTTTEEESSHHHHHHHGGGGSC-CCCSCCCCC
T ss_pred             CCCCCCCeeCCCCCcccCCHHHHHHHHHHcCC-CCCCCCCCC
Confidence            34568899999999999999999999999988 566999988

>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.18  E-value=3.4e-11  Score=61.58  Aligned_cols=41  Identities=20%  Similarity=0.358  Sum_probs=36.6

Q ss_pred             ccCCCCceecCCccccccChhHHHHHHHHhhCCCCCccCCCC
Q psy16578        117 NSQLNGSFICPKCSNRYVYKHNLKQHLKFECGVEPQFKCPYC  158 (177)
Q Consensus       117 ~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C  158 (177)
                      .+.++++|.|..|++.|.....|..|+++|++ +++|.|.+|
T Consensus         6 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~-~k~~~C~~~   46 (46)
T 2em2_A            6 SGSGEKPFKCKECGKAFRQNIHLASHLRIHTG-EKPSGPSSG   46 (46)
T ss_dssp             SCCCCCSEECSSSCCEESSHHHHHHHHHHHCC-CCSSCSSCC
T ss_pred             CCCCCCCEECCcCCchhCCHHHHHHHHHHhCC-CCCCCCCCC
Confidence            44578999999999999999999999999998 566999876

>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.17  E-value=2.7e-11  Score=61.94  Aligned_cols=41  Identities=20%  Similarity=0.340  Sum_probs=36.4

Q ss_pred             ccCCCCceecCCccccccChhHHHHHHHHhhCCCCCccCCCC
Q psy16578        117 NSQLNGSFICPKCSNRYVYKHNLKQHLKFECGVEPQFKCPYC  158 (177)
Q Consensus       117 ~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C  158 (177)
                      .+.++++|.|..|++.|.....|..|+++|++ +++|.|.+|
T Consensus         6 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~-~~~~~C~~~   46 (46)
T 2ep3_A            6 SGTGEKPYRCAECGKAFTDRSNLFTHQKIHTG-EKPSGPSSG   46 (46)
T ss_dssp             SSSCCCSEECSSSCCEESSHHHHHHHHTTTTT-SCCCCTTCC
T ss_pred             CCCCCCCeECCCCCchhCCHHHHHHHHHHcCC-CCCCCCCCC
Confidence            34568999999999999999999999999998 566999976

>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.16  E-value=3.3e-11  Score=61.87  Aligned_cols=41  Identities=15%  Similarity=0.365  Sum_probs=36.7

Q ss_pred             ccCCCCceecCCccccccChhHHHHHHH-HhhCCCCCccCCCC
Q psy16578        117 NSQLNGSFICPKCSNRYVYKHNLKQHLK-FECGVEPQFKCPYC  158 (177)
Q Consensus       117 ~~~~~~~~~C~~C~~~f~~~~~l~~H~~-~h~~~~~~~~C~~C  158 (177)
                      .+.++++|.|..|++.|.....|..|++ +|++ +++|.|.+|
T Consensus         6 ~H~~~k~~~C~~C~k~F~~~~~L~~H~~~~H~~-~k~~~C~~C   47 (47)
T 2epx_A            6 SGTGKKPYECIECGKAFIQNTSLIRHWRYYHTG-EKPSGPSSG   47 (47)
T ss_dssp             CCCCCCSBCCSSSCCCBSSHHHHHHHHTTTTTT-SCSSSCCCC
T ss_pred             ccCCCCCEECCccCchhCChHHHHHHhHhhcCC-CCCCCCCCC
Confidence            4457899999999999999999999999 9988 566999988

>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.16  E-value=4e-13  Score=75.84  Aligned_cols=65  Identities=20%  Similarity=0.314  Sum_probs=54.9

Q ss_pred             CCCCCCCCCccccCccchhccChHHHHHHHHHHhCCCCceeCCCCccccccchHHHhHHHHhcCCCCCCCCccccccccC
Q psy16578         40 SEDKPAGEDVFACPKCSKTYLRQYTLNAHLRYECGKRPKFKCPHCNKKCHQKCNLKSHIALKHDQLLAPLAPRSYRRNSQ  119 (177)
Q Consensus        40 ~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~~~~~~~~  119 (177)
                      ......++++|.|.+|++.|.....|..        .++|.|.+|++.|.....|..|++.|+                 
T Consensus         9 H~~~h~~~~~~~C~~C~k~f~~~~~l~~--------~~~~~C~~C~~~f~~~~~l~~H~~~H~-----------------   63 (73)
T 2ctu_A            9 RQKIHLGDRSQKCSKCGIIFIRRSTLSR--------RKTPMCEKCRKDSCQEAALNKDEGNES-----------------   63 (73)
T ss_dssp             CCCCCCCCSEEECSSSCCEEECCCCCCC--------SSSCCCHHHHHTCSCCCSSCCCSSCCC-----------------
T ss_pred             HHHHhCCCCCeeCCcccchhCCHHHhCc--------CCCCCCCCCChhhcCHHHHHHHHHhhc-----------------
Confidence            4445677889999999999999988876        356999999999999999999986655                 


Q ss_pred             CCCceecCCc
Q psy16578        120 LNGSFICPKC  129 (177)
Q Consensus       120 ~~~~~~C~~C  129 (177)
                      ++++|.|..|
T Consensus        64 ~~~~~~C~~C   73 (73)
T 2ctu_A           64 GKKTSGPSSG   73 (73)
T ss_dssp             CCCCSSCCCC
T ss_pred             CCCCCCCCCC
Confidence            4688999887

>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=99.15  E-value=3.1e-11  Score=62.35  Aligned_cols=45  Identities=22%  Similarity=0.434  Sum_probs=39.2

Q ss_pred             CCCCCCCCccccCccchhccChHHHHHHHHHHhCCCCceeCCCCcc
Q psy16578         41 EDKPAGEDVFACPKCSKTYLRQYTLNAHLRYECGKRPKFKCPHCNK   86 (177)
Q Consensus        41 ~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C~~   86 (177)
                      .....++++|.|.+|++.|.....|..|++.|.+.++ |.|.+|++
T Consensus         4 ~~~~~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~-~~C~~C~k   48 (48)
T 2epr_A            4 GSSGRTRKQVACEICGKIFRDVYHLNRHKLSHSGEKP-YSSGPSSG   48 (48)
T ss_dssp             CSCCCCCCSEEETTTTEEESSHHHHHHHGGGSCSCCC-CCSCCCCC
T ss_pred             CCCCCCCcCeeCCCCCcccCCHHHHHHHHHhcCCCCC-ccCCCCCC
Confidence            3445667889999999999999999999999988755 99999985

>2yrm_A B-cell lymphoma 6 protein; ZF-C2H2, zinc binding, DNA binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.11  E-value=1e-10  Score=58.85  Aligned_cols=39  Identities=26%  Similarity=0.408  Sum_probs=34.9

Q ss_pred             cCCCCceecCCccccccChhHHHHHHHHhhCCCCCccCCC
Q psy16578        118 SQLNGSFICPKCSNRYVYKHNLKQHLKFECGVEPQFKCPY  157 (177)
Q Consensus       118 ~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~  157 (177)
                      +.++++|.|..|++.|.....|..|+++|++ +++|.|.+
T Consensus         5 h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~-~k~~~C~~   43 (43)
T 2yrm_A            5 SSGNGAFFCNECDCRFSEEASLKRHTLQTHS-DKSGPSSG   43 (43)
T ss_dssp             CSSSCCBCCSSSCCCBSSHHHHHHHHHHHTC-TTCSSSCC
T ss_pred             cCCCCCEECCCCCCeeCChHHHHHHHHhhCC-CCCccCCC
Confidence            4578899999999999999999999999998 56699975

>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.11  E-value=1.1e-10  Score=59.64  Aligned_cols=40  Identities=18%  Similarity=0.260  Sum_probs=35.3

Q ss_pred             ccCCCCceecCCccccccChhHHHHHHHHhhCCCCCccCCC
Q psy16578        117 NSQLNGSFICPKCSNRYVYKHNLKQHLKFECGVEPQFKCPY  157 (177)
Q Consensus       117 ~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~  157 (177)
                      .+.++++|.|..|++.|.....|..|+++|++ +++|.|++
T Consensus         6 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~-~k~~~C~~   45 (46)
T 2em4_A            6 SGTGQRPYECIECGKAFKTKSSLICHRRSHTG-EKPSGPSS   45 (46)
T ss_dssp             CCCCSSSEECSSSCCEESSHHHHHHHHHHHSS-SSCCCCCC
T ss_pred             ccCCCcCcCCCCCCCccCCHHHHHHHHHhcCC-CCCCCCCC
Confidence            44578999999999999999999999999998 56699974

>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.10  E-value=1.3e-10  Score=59.39  Aligned_cols=40  Identities=25%  Similarity=0.352  Sum_probs=35.3

Q ss_pred             ccCCCCceecCCccccccChhHHHHHHHHhhCCCCCccCCC
Q psy16578        117 NSQLNGSFICPKCSNRYVYKHNLKQHLKFECGVEPQFKCPY  157 (177)
Q Consensus       117 ~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~  157 (177)
                      .+.++++|.|..|++.|.....|..|+++|++ +++|.|++
T Consensus         6 ~H~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~-~~~~~C~~   45 (46)
T 2em3_A            6 SGTGEKPYECKVCSKAFTQKAHLAQHQKTHTG-EKPSGPSS   45 (46)
T ss_dssp             CCSSCCSEECSSSCCEESSHHHHHHHHHHHCC-CCCCCSCC
T ss_pred             CCCCCcCeECCCCCcccCCHHHHHHHHHHhCC-CCCCCCCC
Confidence            34568999999999999999999999999998 56699975

>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eoi_A

Probab=99.10  E-value=1.3e-10  Score=59.33  Aligned_cols=40  Identities=18%  Similarity=0.363  Sum_probs=35.2

Q ss_pred             ccCCCCceecCCccccccChhHHHHHHHHhhCCCCCccCCC
Q psy16578        117 NSQLNGSFICPKCSNRYVYKHNLKQHLKFECGVEPQFKCPY  157 (177)
Q Consensus       117 ~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~  157 (177)
                      .+.++++|.|..|++.|.....|..|+++|++ +++|.|++
T Consensus         6 ~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~-~k~~~C~~   45 (46)
T 2emj_A            6 SGTGEKPFECAECGKSFSISSQLATHQRIHTG-EKPSGPSS   45 (46)
T ss_dssp             CCCCCCSEECSSSSCEESSHHHHHHHHHHHTT-SCSSSSCC
T ss_pred             CCCCCCCEECCCCCcccCCHHHHHHHHHHhCC-CCCCCCCC
Confidence            34568999999999999999999999999998 56699975

>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=99.08  E-value=1.2e-10  Score=59.16  Aligned_cols=42  Identities=24%  Similarity=0.507  Sum_probs=37.5

Q ss_pred             CCCCCCccccCccchhccChHHHHHHHHHHhCCCCceeCCCCc
Q psy16578         43 KPAGEDVFACPKCSKTYLRQYTLNAHLRYECGKRPKFKCPHCN   85 (177)
Q Consensus        43 ~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C~   85 (177)
                      ...++++|.|.+|++.|.....|..|++.|.+.++ |.|++||
T Consensus         4 ~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~~~-~~C~~cg   45 (45)
T 2epq_A            4 GSSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVG-KSGPSSG   45 (45)
T ss_dssp             CCSSCCSSEETTTTEECSCHHHHHHHHHHHSCCCC-CCCCCCC
T ss_pred             CcCCCCCCcCCCCCcccCCHHHHHHHHHHccCCCC-CCCcCCC
Confidence            35567889999999999999999999999988755 9999996

>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.08  E-value=1.6e-10  Score=58.92  Aligned_cols=40  Identities=15%  Similarity=0.391  Sum_probs=35.3

Q ss_pred             ccCCCCceecCCccccccChhHHHHHHHHhhCCCCCccCCC
Q psy16578        117 NSQLNGSFICPKCSNRYVYKHNLKQHLKFECGVEPQFKCPY  157 (177)
Q Consensus       117 ~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~  157 (177)
                      .+.++++|.|..|++.|.....|..|+++|++ +++|.|++
T Consensus         6 ~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~-~kp~~C~~   45 (46)
T 2eor_A            6 SGTGEKPYNCEECGKAFIHDSQLQEHQRIHTG-EKPSGPSS   45 (46)
T ss_dssp             SSSCCCSEECTTTCCEESSHHHHHHHHHHHHS-CCCSSSTT
T ss_pred             CcCCCcCccCCCCCCCcCCHHHHHHHHHhcCC-CCCCCCCC
Confidence            34568899999999999999999999999999 56699975

>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.08  E-value=1.3e-10  Score=59.34  Aligned_cols=40  Identities=18%  Similarity=0.342  Sum_probs=35.2

Q ss_pred             ccCCCCceecCCccccccChhHHHHHHHHhhCCCCCccCCC
Q psy16578        117 NSQLNGSFICPKCSNRYVYKHNLKQHLKFECGVEPQFKCPY  157 (177)
Q Consensus       117 ~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~  157 (177)
                      .+.++++|.|..|++.|.....|..|+++|++ +++|.|++
T Consensus         6 ~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~-~k~~~C~~   45 (46)
T 2ytp_A            6 SGTGERHYECSECGKAFARKSTLIMHQRIHTG-EKPSGPSS   45 (46)
T ss_dssp             SSCCCCCEECSSSCCEESSHHHHHHHHTTTSC-CCCCSSCC
T ss_pred             CcCCCCCeECCcCCcccCCHHHHHHHHHHhCC-CCCCCCCC
Confidence            34568999999999999999999999999998 56699974

>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.08  E-value=2.1e-10  Score=58.54  Aligned_cols=43  Identities=23%  Similarity=0.454  Sum_probs=37.7

Q ss_pred             CCCCCCCCccccCccchhccChHHHHHHHHHHhCCCCceeCCCC
Q psy16578         41 EDKPAGEDVFACPKCSKTYLRQYTLNAHLRYECGKRPKFKCPHC   84 (177)
Q Consensus        41 ~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C   84 (177)
                      .....++++|.|.+|++.|....+|..|++.|.+.++ |.|++|
T Consensus         4 ~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~-~~C~~C   46 (46)
T 2ytm_A            4 GSSGTGEKPYKCMECGKAFGDNSSCTQHQRLHTGQRP-SGPSSG   46 (46)
T ss_dssp             CCCCSSCCSSSBTTTTBCCSSHHHHHHHHHHHHSCCC-CCCCCC
T ss_pred             CcCCCCCCCcCCCCCCchhCCHHHHHHHHHHcCCCCC-CCCCCC
Confidence            3456677889999999999999999999999998855 999987

>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ena_A 2en4_A

Probab=99.08  E-value=2e-10  Score=58.64  Aligned_cols=43  Identities=28%  Similarity=0.551  Sum_probs=37.4

Q ss_pred             CCCCCCCCccccCccchhccChHHHHHHHHHHhCCCCceeCCCC
Q psy16578         41 EDKPAGEDVFACPKCSKTYLRQYTLNAHLRYECGKRPKFKCPHC   84 (177)
Q Consensus        41 ~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C   84 (177)
                      .....++++|.|.+|++.|....+|..|++.|.+.++ |.|.+|
T Consensus         4 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~-~~C~~C   46 (46)
T 2ely_A            4 GSSGTGEKPFKCVECGKGFSRRSALNVHHKLHTGEKP-SGPSSG   46 (46)
T ss_dssp             CCCCCCCCSBCCSSSCCCBSSTTHHHHHHHHHSCCSS-CSCCCC
T ss_pred             CCCCCCCCCcccCccCcccCCHHHHHHHHHHcCCCCC-CCCCCC
Confidence            3456678899999999999999999999999988755 999987

>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.07  E-value=1.8e-10  Score=58.82  Aligned_cols=40  Identities=18%  Similarity=0.372  Sum_probs=35.1

Q ss_pred             ccCCCCceecCCccccccChhHHHHHHHHhhCCCCCccCCC
Q psy16578        117 NSQLNGSFICPKCSNRYVYKHNLKQHLKFECGVEPQFKCPY  157 (177)
Q Consensus       117 ~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~  157 (177)
                      .+.++++|.|..|++.|.....|..|+++|++ +++|.|++
T Consensus         6 ~H~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~-~k~~~C~~   45 (46)
T 2emi_A            6 SGTGERHYECSECGKAFIQKSTLSMHQRIHRG-EKPSGPSS   45 (46)
T ss_dssp             SCSSCCCEECSSSCCEESSHHHHHHHHGGGCS-CCCCSCCC
T ss_pred             ccCCCCCCCCCCCCcccCCHHHHHHHHhHhCC-CCCCCCCC
Confidence            44578999999999999999999999999988 56699974

>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.07  E-value=1.9e-10  Score=58.72  Aligned_cols=40  Identities=15%  Similarity=0.278  Sum_probs=35.2

Q ss_pred             ccCCCCceecCCccccccChhHHHHHHHHhhCCCCCccCCC
Q psy16578        117 NSQLNGSFICPKCSNRYVYKHNLKQHLKFECGVEPQFKCPY  157 (177)
Q Consensus       117 ~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~  157 (177)
                      .+.++++|.|..|++.|.....|..|+++|++ +++|.|++
T Consensus         6 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~-~k~~~C~~   45 (46)
T 2eow_A            6 SGTGEKPYKCNECGKAFRARSSLAIHQATHSG-EKPSGPSS   45 (46)
T ss_dssp             CSCCCCCEECTTSCCEESSHHHHHHHHHHHCC-CSCSCTTC
T ss_pred             CCCCCCCeeccccCChhcCHHHHHHHHHHcCC-CCCCCCCC
Confidence            34568999999999999999999999999998 56699974

>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.07  E-value=1.7e-10  Score=58.96  Aligned_cols=40  Identities=18%  Similarity=0.311  Sum_probs=35.3

Q ss_pred             ccCCCCceecCCccccccChhHHHHHHHHhhCCCCCccCCC
Q psy16578        117 NSQLNGSFICPKCSNRYVYKHNLKQHLKFECGVEPQFKCPY  157 (177)
Q Consensus       117 ~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~  157 (177)
                      .+.++++|.|..|++.|.....|..|+++|++ +++|.|.+
T Consensus         6 ~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~-~k~~~C~~   45 (46)
T 2eom_A            6 SGHGERGHRCSDCGKFFLQASNFIQHRRIHTG-EKPSGPSS   45 (46)
T ss_dssp             CCCCCSSCCCSSSCCCCSSHHHHHHHHHHHSS-CCCSSCCC
T ss_pred             CCCCCCCcCCCCCCCeeCChHHHHHHHHHhCC-CCCCCCCC
Confidence            45578999999999999999999999999998 56699974

>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.07  E-value=2.1e-10  Score=58.54  Aligned_cols=43  Identities=26%  Similarity=0.473  Sum_probs=37.8

Q ss_pred             CCCCCCCCccccCccchhccChHHHHHHHHHHhCCCCceeCCCC
Q psy16578         41 EDKPAGEDVFACPKCSKTYLRQYTLNAHLRYECGKRPKFKCPHC   84 (177)
Q Consensus        41 ~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C   84 (177)
                      .....++++|.|.+|++.|....+|..|++.|.+.++ |.|.+|
T Consensus         4 ~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~-~~C~~C   46 (46)
T 2em8_A            4 GSSGSGEKPYKCVECGKGYKRRLDLDFHQRVHTGEKL-SGPSSG   46 (46)
T ss_dssp             CCCCCSCCSEECSSSCCEESSHHHHHHHHHHHHCCCC-CCSCCC
T ss_pred             CCCCCCCCCeECcccCchhCCHHHHHHHHHHHcCCCC-CCCCCC
Confidence            3456678899999999999999999999999998865 999987

>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.07  E-value=2e-10  Score=58.65  Aligned_cols=40  Identities=18%  Similarity=0.326  Sum_probs=35.2

Q ss_pred             ccCCCCceecCCccccccChhHHHHHHHHhhCCCCCccCCC
Q psy16578        117 NSQLNGSFICPKCSNRYVYKHNLKQHLKFECGVEPQFKCPY  157 (177)
Q Consensus       117 ~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~  157 (177)
                      .+.++++|.|..|++.|.....|..|+++|++ +++|.|++
T Consensus         6 ~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~-~k~~~C~~   45 (46)
T 2en9_A            6 SGAGKKLFKCNECKKTFTQSSSLTVHQRIHTG-EKPSGPSS   45 (46)
T ss_dssp             SCCSSCCCBCTTTCCBCSSHHHHHHHHHHHTS-SCCCSCCC
T ss_pred             CCCCCCCEECCccCcccCCHHHHHHHHHHcCC-CCCCCCCC
Confidence            44578999999999999999999999999998 56699974

>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens}

Probab=99.07  E-value=1.7e-10  Score=58.91  Aligned_cols=44  Identities=23%  Similarity=0.435  Sum_probs=38.0

Q ss_pred             CCCCCCCCCccccCccchhccChHHHHHHHHHHhCCCCceeCCCC
Q psy16578         40 SEDKPAGEDVFACPKCSKTYLRQYTLNAHLRYECGKRPKFKCPHC   84 (177)
Q Consensus        40 ~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C   84 (177)
                      ......++++|.|.+|++.|....+|..|++.|.+.++ |.|.+|
T Consensus         3 h~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~-~~C~~C   46 (46)
T 2el6_A            3 SGSSGAGVNPYKCSQCEKSFSGKLRLLVHQRMHTREKP-SGPSSG   46 (46)
T ss_dssp             SCCSSCCCCSEECSSSSCEESSHHHHHHHHGGGCCSSC-CSCCCC
T ss_pred             CCCCCCCCCCeECCCCCcccCCHHHHHHHHHHcCCCCC-CCCCCC
Confidence            34456678899999999999999999999999988755 999987

>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.07  E-value=2e-10  Score=58.65  Aligned_cols=43  Identities=23%  Similarity=0.426  Sum_probs=37.8

Q ss_pred             CCCCCCCCccccCccchhccChHHHHHHHHHHhCCCCceeCCCC
Q psy16578         41 EDKPAGEDVFACPKCSKTYLRQYTLNAHLRYECGKRPKFKCPHC   84 (177)
Q Consensus        41 ~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C   84 (177)
                      .....++++|.|.+|++.|....+|..|++.|.+.++ |.|.+|
T Consensus         4 ~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~~~-~~C~~C   46 (46)
T 2elz_A            4 GSSGSVEKPYKCEDCGKGYNRRLNLDMHQRVHMGEKT-SGPSSG   46 (46)
T ss_dssp             CSCCCCCSSCBCSSSCCBCSSHHHHHHHGGGGGSCCC-CCSCCC
T ss_pred             CCCCCCCCCeeCcccCchhCCHHHHHHHHHhcCCCCC-CCCCCC
Confidence            3456778899999999999999999999999988755 999987

>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.07  E-value=1.5e-10  Score=59.11  Aligned_cols=40  Identities=28%  Similarity=0.435  Sum_probs=35.0

Q ss_pred             ccCCCCceecCCccccccChhHHHHHHHHhhCCCCCccCCC
Q psy16578        117 NSQLNGSFICPKCSNRYVYKHNLKQHLKFECGVEPQFKCPY  157 (177)
Q Consensus       117 ~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~  157 (177)
                      .+.++++|.|..|++.|.....|..|+++|++ +++|.|++
T Consensus         6 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~-~~~~~C~~   45 (46)
T 2emg_A            6 SGTGENPFICSECGKVFTHKTNLIIHQKIHTG-ERPSGPSS   45 (46)
T ss_dssp             CCCSCCSCBCTTTCCBCSSHHHHHHHHTTTSC-CCCSCSCC
T ss_pred             CCCCCCCEECCccCcccCCHHHHHHHHHHhCC-CCCCCCCC
Confidence            34567899999999999999999999999998 56699974

>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.07  E-value=1.3e-10  Score=59.11  Aligned_cols=41  Identities=22%  Similarity=0.351  Sum_probs=35.8

Q ss_pred             cccCCCCceecCCccccccChhHHHHHHHHhhCCCCCccCCC
Q psy16578        116 RNSQLNGSFICPKCSNRYVYKHNLKQHLKFECGVEPQFKCPY  157 (177)
Q Consensus       116 ~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~  157 (177)
                      ..+.++++|.|..|++.|.....|..|+++|++ +++|.|++
T Consensus         5 ~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~-~k~~~C~~   45 (45)
T 2epu_A            5 SSGTGQKPFECTHCGKSFRAKGNLVTHQRIHTG-EKSGPSSG   45 (45)
T ss_dssp             CCCCSCCSEEETTTTEEESSHHHHHHHHTTTSS-CCCCCSCC
T ss_pred             CCCCCCcCccCCCCCCccCChHHHHHHHHHhCC-CCCCCCCC
Confidence            345678999999999999999999999999998 56699974

>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.06  E-value=1.2e-10  Score=59.51  Aligned_cols=40  Identities=18%  Similarity=0.296  Sum_probs=35.2

Q ss_pred             ccCCCCceecCCccccccChhHHHHHHHHhhCCCCCccCCC
Q psy16578        117 NSQLNGSFICPKCSNRYVYKHNLKQHLKFECGVEPQFKCPY  157 (177)
Q Consensus       117 ~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~  157 (177)
                      .+.++++|.|..|++.|.....|..|+++|++ +++|.|++
T Consensus         6 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~-~k~~~C~~   45 (46)
T 2eon_A            6 SGTGEKPYKCQVCGKAFRVSSHLVQHHSVHSG-ERPSGPSS   45 (46)
T ss_dssp             SCSSCCSCBCSSSCCBCSSHHHHHHHTTTTTS-CCSCTTSC
T ss_pred             CCCCCcccCCCCCCcccCcHHHHHHHHHhcCC-CCCCCCCC
Confidence            45578999999999999999999999999988 56699974

>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.06  E-value=2e-10  Score=58.65  Aligned_cols=43  Identities=28%  Similarity=0.514  Sum_probs=37.5

Q ss_pred             CCCCCCCCccccCccchhccChHHHHHHHHHHhCCCCceeCCCC
Q psy16578         41 EDKPAGEDVFACPKCSKTYLRQYTLNAHLRYECGKRPKFKCPHC   84 (177)
Q Consensus        41 ~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C   84 (177)
                      .....++++|.|.+|++.|....+|..|++.|.+.++ |.|++|
T Consensus         4 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~-~~C~~C   46 (46)
T 2epz_A            4 GSSGTGEKPFDCIDCGKAFSDHIGLNQHRRIHTGEKP-SGPSSG   46 (46)
T ss_dssp             CSSCCCCCSBCCTTTCCCBSSHHHHHHHHTTTTTCCC-CSSCCC
T ss_pred             CCCcCCCCCeECCCCCceeCCHHHHHHHHHHhCCCCC-CCCCCC
Confidence            3456678899999999999999999999999988755 999987

>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.06  E-value=1.7e-10  Score=58.87  Aligned_cols=40  Identities=23%  Similarity=0.337  Sum_probs=35.1

Q ss_pred             ccCCCCceecCCccccccChhHHHHHHHHhhCCCCCccCCC
Q psy16578        117 NSQLNGSFICPKCSNRYVYKHNLKQHLKFECGVEPQFKCPY  157 (177)
Q Consensus       117 ~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~  157 (177)
                      .+.++++|.|..|++.|.....|..|+++|++ +++|.|++
T Consensus         6 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~-~k~~~C~~   45 (46)
T 2ytf_A            6 SGTGEKPFECSECQKAFNTKSNLIVHQRTHTG-EKPSGPSS   45 (46)
T ss_dssp             SSCCCCSEECSSSCCEESSHHHHHHHHHTSCS-SSSSCCCC
T ss_pred             CCCCCCCcCCCCCCcccCCHHHHHHHHHHhCC-CCCCCCCC
Confidence            34568899999999999999999999999998 56699975

>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.06  E-value=1.5e-10  Score=59.08  Aligned_cols=44  Identities=23%  Similarity=0.460  Sum_probs=38.4

Q ss_pred             CCCCCCCCCccccCccchhccChHHHHHHHHHHhCCCCceeCCCC
Q psy16578         40 SEDKPAGEDVFACPKCSKTYLRQYTLNAHLRYECGKRPKFKCPHC   84 (177)
Q Consensus        40 ~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C   84 (177)
                      ......++++|.|.+|++.|....+|..|++.|.+.++ |.|++|
T Consensus         3 ~~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~-~~C~~C   46 (46)
T 2ytt_A            3 SGSSGEGEKPYQCSECGKSFSGSYRLTQHWITHTREKP-SGPSSG   46 (46)
T ss_dssp             CSSSCSCCCTTCCSSSCCCCSSHHHHHHHHTHHHHCCC-CSCCCC
T ss_pred             CCCCCCCCCCeeCCCCCcccCCHHHHHHHHHHcCCCCC-CCCCCC
Confidence            34456678889999999999999999999999998865 999987

>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger; NMR {Homo sapiens} SCOP: g.41.3.1

Probab=99.06  E-value=3.6e-11  Score=65.64  Aligned_cols=49  Identities=24%  Similarity=0.545  Sum_probs=41.6

Q ss_pred             ccCCCCceecCCccccccChhHHHHHHHHhhCCCCCccCCCCcccccchhHHH
Q psy16578        117 NSQLNGSFICPKCSNRYVYKHNLKQHLKFECGVEPQFKCPYCDKRCKLKGNLM  169 (177)
Q Consensus       117 ~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C~~~f~~~~~l~  169 (177)
                      .+.++++|.|..|++.|.....|.   ++|.+ +++|.|.+|++.|...+++.
T Consensus         8 ~H~~~k~~~C~~C~k~F~~~~~l~---~~H~~-~k~~~C~~C~k~f~~~~~~~   56 (62)
T 1vd4_A            8 DSTNRASFKCPVCSSTFTDLEANQ---LFDPM-TGTFRCTFCHTEVEEDESAM   56 (62)
T ss_dssp             SCCSSSEEECSSSCCEEEHHHHHH---HEETT-TTEEBCSSSCCBCEECTTCS
T ss_pred             HcCCCCCccCCCCCchhccHHHhH---hhcCC-CCCEECCCCCCccccCcccc
Confidence            345789999999999999988886   78888 66699999999999887654

>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A

Probab=99.06  E-value=2e-10  Score=57.38  Aligned_cols=38  Identities=21%  Similarity=0.396  Sum_probs=33.6

Q ss_pred             cCCCCceecCCccccccChhHHHHHHHHhhCCCCCccCC
Q psy16578        118 SQLNGSFICPKCSNRYVYKHNLKQHLKFECGVEPQFKCP  156 (177)
Q Consensus       118 ~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~  156 (177)
                      +.++++|.|..|++.|.....|..|+++|++ +++|.|+
T Consensus         5 H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~-~~~~~C~   42 (42)
T 2el5_A            5 SSGENPYECSECGKAFNRKDQLISHQRTHAG-ESGPSSG   42 (42)
T ss_dssp             SSSCCSEECSSSCCEESSHHHHHHHHGGGCC-CCSCCCC
T ss_pred             CCCCCCccCCCcChhhCCHHHHHHHHHhcCC-CCCCCCC
Confidence            4567899999999999999999999999998 5669985

>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.06  E-value=2.2e-10  Score=58.45  Aligned_cols=42  Identities=24%  Similarity=0.487  Sum_probs=36.8

Q ss_pred             CCCCCCCccccCccchhccChHHHHHHHHHHhCCCCceeCCCC
Q psy16578         42 DKPAGEDVFACPKCSKTYLRQYTLNAHLRYECGKRPKFKCPHC   84 (177)
Q Consensus        42 ~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C   84 (177)
                      ....++++|.|.+|++.|....+|..|++.|.+.++ |.|++|
T Consensus         5 ~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~-~~C~~C   46 (46)
T 2emm_A            5 SSGTGERPHKCNECGKSFIQSAHLIQHQRIHTGEKP-SGPSSG   46 (46)
T ss_dssp             SCSSCCCSEECSSSCCEESSHHHHHHHHHHHSCCCT-TSSSCC
T ss_pred             CCcCCCCCeeCCCCChhhCCHHHHHHHHHHhCCCCC-CCCCCC
Confidence            445677889999999999999999999999988755 999987

>2ent_A Krueppel-like factor 15; zinc binding, transcription factor, adipogenesis, CLCNKA, chloride channel Ka, rhodopsin, IRBP; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.06  E-value=1.7e-10  Score=59.37  Aligned_cols=41  Identities=17%  Similarity=0.276  Sum_probs=36.7

Q ss_pred             ccCCCCceecC--CccccccChhHHHHHHHHhhCCCCCccCCCC
Q psy16578        117 NSQLNGSFICP--KCSNRYVYKHNLKQHLKFECGVEPQFKCPYC  158 (177)
Q Consensus       117 ~~~~~~~~~C~--~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C  158 (177)
                      .+.++++|.|.  .|++.|.....|..|+++|++ +++|.|.+|
T Consensus         6 ~H~~~k~~~C~~~~C~k~f~~~~~L~~H~~~H~~-~k~~~C~~C   48 (48)
T 2ent_A            6 SGTGEKPFACTWPGCGWRFSRSDELSRHRRSHSG-VKPSGPSSG   48 (48)
T ss_dssp             SSCCCCCEECCSSSCCCEESSHHHHHHHHTTSCC-CCSCSSCCC
T ss_pred             CcCCCCCeECCCCCCCCccCCHHHHHHHHHHhCC-CCCCCCCCC
Confidence            45578999998  899999999999999999998 666999988

>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.05  E-value=1.9e-10  Score=58.67  Aligned_cols=43  Identities=26%  Similarity=0.514  Sum_probs=37.4

Q ss_pred             CCCCCCCCccccCccchhccChHHHHHHHHHHhCCCCceeCCCC
Q psy16578         41 EDKPAGEDVFACPKCSKTYLRQYTLNAHLRYECGKRPKFKCPHC   84 (177)
Q Consensus        41 ~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C   84 (177)
                      .....++++|.|.+|++.|....+|..|++.|.+.++ |.|.+|
T Consensus         4 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~-~~C~~C   46 (46)
T 2ytq_A            4 GSSGAGEKPYGCSECGKAFSSKSYLIIHMRTHSGEKP-SGPSSG   46 (46)
T ss_dssp             SSCSSCCCSCBCSSSCCBCSCHHHHHHHHTTTCCSCS-SCCCCC
T ss_pred             CcCcCCCCCcCCCccChhhCChHHHHHHHHHhCCCCC-CCCCCC
Confidence            3456678889999999999999999999999887755 999987

>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.05  E-value=1.7e-10  Score=58.84  Aligned_cols=40  Identities=15%  Similarity=0.302  Sum_probs=34.9

Q ss_pred             ccCCCCceecCCccccccChhHHHHHHHHhhCCCCCccCCC
Q psy16578        117 NSQLNGSFICPKCSNRYVYKHNLKQHLKFECGVEPQFKCPY  157 (177)
Q Consensus       117 ~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~  157 (177)
                      .+.++++|.|..|++.|.....|..|+++|++ +++|.|++
T Consensus         6 ~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~-~k~~~C~~   45 (46)
T 2enf_A            6 SGTGEKPYKCNECGKVFTQNSHLVRHRGIHTG-EKPSGPSS   45 (46)
T ss_dssp             CCCCCCSCBCSSSCCBCSSHHHHHHHHTTTTT-SSCCCCSC
T ss_pred             CCCCCcCeECCCCCcccCCHHHHHHHHHhhCC-CCCCCCCC
Confidence            34568899999999999999999999999998 56699974

>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.05  E-value=2.2e-10  Score=58.42  Aligned_cols=40  Identities=18%  Similarity=0.384  Sum_probs=35.0

Q ss_pred             ccCCCCceecCCccccccChhHHHHHHHHhhCCCCCccCCC
Q psy16578        117 NSQLNGSFICPKCSNRYVYKHNLKQHLKFECGVEPQFKCPY  157 (177)
Q Consensus       117 ~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~  157 (177)
                      .+.++++|.|..|++.|.....|..|+++|++ +++|.|++
T Consensus         6 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~-~k~~~C~~   45 (46)
T 2ep1_A            6 SGTGEKPYECSDCGKSFIKKSQLHVHQRIHTG-ENPSGPSS   45 (46)
T ss_dssp             CCSSCCSSCCSSSCCCCSSHHHHHHHHGGGSS-SCCCSSSC
T ss_pred             CCCCCCCcCCCCCCchhCCHHHHHHHHHHhCC-CCCCCCCC
Confidence            34568899999999999999999999999998 56699974

>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.05  E-value=2.2e-10  Score=58.46  Aligned_cols=40  Identities=18%  Similarity=0.359  Sum_probs=34.9

Q ss_pred             ccCCCCceecCCccccccChhHHHHHHHHhhCCCCCccCCC
Q psy16578        117 NSQLNGSFICPKCSNRYVYKHNLKQHLKFECGVEPQFKCPY  157 (177)
Q Consensus       117 ~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~  157 (177)
                      .+.++++|.|..|++.|.....|..|+++|++ +++|.|+.
T Consensus         6 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~-~k~~~C~~   45 (46)
T 2eoh_A            6 SGSGKKPYECKECRKTFIQIGHLNQHKRVHTG-ERSSGPSS   45 (46)
T ss_dssp             SCCCSCSCCCSSSCCCCSSHHHHHHHHHHCSS-CCSCSTTC
T ss_pred             CcCCCCCcCCCCcCchhCCHHHHHHHHHHhCC-CCCCCCCC
Confidence            34578899999999999999999999999988 66699963

>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.05  E-value=2.1e-10  Score=58.54  Aligned_cols=40  Identities=20%  Similarity=0.418  Sum_probs=34.8

Q ss_pred             ccCCCCceecCCccccccChhHHHHHHHHhhCCCCCccCCC
Q psy16578        117 NSQLNGSFICPKCSNRYVYKHNLKQHLKFECGVEPQFKCPY  157 (177)
Q Consensus       117 ~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~  157 (177)
                      .+.++++|.|..|++.|.....|..|+++|++ +++|.|.+
T Consensus         6 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~-~k~~~C~~   45 (46)
T 2yth_A            6 SGSGEKPFQCEECGKRFTQNSHLHSHQRVHTG-EKPSGPSS   45 (46)
T ss_dssp             CCCCSSSBCCSSSCCCBSSHHHHHHHGGGGTT-CCCSSCCC
T ss_pred             CCCCCcCCCCCCCCcccCCHHHHHHHHHhcCC-CCCCCCCC
Confidence            34567899999999999999999999999988 56699974

>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.05  E-value=2.2e-10  Score=58.41  Aligned_cols=42  Identities=26%  Similarity=0.539  Sum_probs=36.7

Q ss_pred             CCCCCCCccccCccchhccChHHHHHHHHHHhCCCCceeCCCC
Q psy16578         42 DKPAGEDVFACPKCSKTYLRQYTLNAHLRYECGKRPKFKCPHC   84 (177)
Q Consensus        42 ~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C   84 (177)
                      ....++++|.|.+|++.|....+|..|++.|.+.++ |.|++|
T Consensus         5 ~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~-~~C~~C   46 (46)
T 2eq4_A            5 SSGTGEKLYNCKECGKSFSRAPCLLKHERLHSGEKP-SGPSSG   46 (46)
T ss_dssp             CCSSCCCCCCBTTTTBCCSCHHHHHHHHHHCCSSSC-CCCCCC
T ss_pred             ccCCCCCCeECCCCCCccCchHHHHHHHHhcCCCCC-CCCCCC
Confidence            445677889999999999999999999999987755 999987

>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.05  E-value=2.5e-10  Score=57.03  Aligned_cols=38  Identities=18%  Similarity=0.323  Sum_probs=33.4

Q ss_pred             cCCCCceecCCccccccChhHHHHHHHHhhCCCCCccCC
Q psy16578        118 SQLNGSFICPKCSNRYVYKHNLKQHLKFECGVEPQFKCP  156 (177)
Q Consensus       118 ~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~  156 (177)
                      +.++++|.|..|++.|.....|..|+++|++ +++|.|+
T Consensus         5 H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~-~~~~~C~   42 (42)
T 2yte_A            5 SSGEKPYSCAECKETFSDNNRLVQHQKMHTV-KSGPSSG   42 (42)
T ss_dssp             SCSCCSCBCTTTCCBCSSHHHHHHHHHHTSC-CSSCCCC
T ss_pred             cCCCCCeECCCCCCccCCHHHHHHHHHHhCC-CCCCCCC
Confidence            4567899999999999999999999999988 5669885

>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ysv_A

Probab=99.05  E-value=3.1e-10  Score=57.89  Aligned_cols=42  Identities=24%  Similarity=0.492  Sum_probs=36.6

Q ss_pred             CCCCCCCccccCccchhccChHHHHHHHHHHhCCCCceeCCCC
Q psy16578         42 DKPAGEDVFACPKCSKTYLRQYTLNAHLRYECGKRPKFKCPHC   84 (177)
Q Consensus        42 ~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C   84 (177)
                      ....++++|.|.+|++.|.....|..|++.|.+.++ |.|+.|
T Consensus         5 ~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~-~~C~~C   46 (46)
T 2emk_A            5 SSGTGEKPYECKECGKAFSQTTHLIQHQRVHTGEKP-SGPSSG   46 (46)
T ss_dssp             CCCSSSCSCBCSSSCCBCSCHHHHHHHHHHHSSCCC-SSCCCC
T ss_pred             CccCCCCceECCCCCchhCCHHHHHHHHHHcCCCCC-CCCCCC
Confidence            345677889999999999999999999999988755 999987

>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.05  E-value=1.8e-10  Score=58.80  Aligned_cols=43  Identities=23%  Similarity=0.461  Sum_probs=37.7

Q ss_pred             CCCCCCCCccccCccchhccChHHHHHHHHHHhCCCCceeCCCC
Q psy16578         41 EDKPAGEDVFACPKCSKTYLRQYTLNAHLRYECGKRPKFKCPHC   84 (177)
Q Consensus        41 ~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C   84 (177)
                      .....++++|.|.+|++.|....+|..|++.|.+.++ |.|.+|
T Consensus         4 ~~~h~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~-~~C~~C   46 (46)
T 2ep0_A            4 GSSGTGEKPYKCDVCHKSFRYGSSLTVHQRIHTGEKP-SGPSSG   46 (46)
T ss_dssp             CCSSTTCCSEECSSSCCEESSHHHHHHHHTTTSSSCC-CSCCCC
T ss_pred             CCCCCCCCCeeCcccCcccCChHHHHHHHHHhCCCCC-CCCCCC
Confidence            4456778899999999999999999999999988755 999987

>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.05  E-value=3.1e-10  Score=57.85  Aligned_cols=42  Identities=31%  Similarity=0.579  Sum_probs=36.8

Q ss_pred             CCCCCCCccccCccchhccChHHHHHHHHHHhCCCCceeCCCC
Q psy16578         42 DKPAGEDVFACPKCSKTYLRQYTLNAHLRYECGKRPKFKCPHC   84 (177)
Q Consensus        42 ~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C   84 (177)
                      ....++++|.|.+|++.|.....|..|++.|.+.++ |.|++|
T Consensus         5 ~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~-~~C~~C   46 (46)
T 2ytd_A            5 SSGSGEKPYKCSECGKAFHRHTHLNEHRRIHTGYRP-SGPSSG   46 (46)
T ss_dssp             CCSCCCCSEECSSSCCEESSHHHHHHHHHHHTCCCS-SCSSCC
T ss_pred             cccCCCcCeECCCCCCeeCChHHHHHHHHHcCCCCC-CCCCCC
Confidence            345677889999999999999999999999988755 999987

>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.05  E-value=2.9e-10  Score=57.96  Aligned_cols=42  Identities=19%  Similarity=0.396  Sum_probs=36.9

Q ss_pred             CCCCCCCccccCccchhccChHHHHHHHHHHhCCCCceeCCCC
Q psy16578         42 DKPAGEDVFACPKCSKTYLRQYTLNAHLRYECGKRPKFKCPHC   84 (177)
Q Consensus        42 ~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C   84 (177)
                      ....++++|.|.+|++.|....+|..|++.|.+.++ |.|.+|
T Consensus         5 ~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~-~~C~~C   46 (46)
T 2emp_A            5 SSGTGVKPYMCNECGKAFSVYSSLTTHQVIHTGEKP-SGPSSG   46 (46)
T ss_dssp             SCSSCCCSEECSSSCCEESCHHHHHHHHHHHHCCSC-CSCCCC
T ss_pred             cccCCCcCeECCCCCchhCCHHHHHHHHHHcCCCCC-CCCCCC
Confidence            345677889999999999999999999999998855 999987

>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.04  E-value=3e-10  Score=57.93  Aligned_cols=42  Identities=29%  Similarity=0.630  Sum_probs=36.7

Q ss_pred             CCCCCCCccccCccchhccChHHHHHHHHHHhCCCCceeCCCC
Q psy16578         42 DKPAGEDVFACPKCSKTYLRQYTLNAHLRYECGKRPKFKCPHC   84 (177)
Q Consensus        42 ~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C   84 (177)
                      ....++++|.|.+|++.|....+|..|++.|.+.++ |.|+.|
T Consensus         5 ~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~-~~C~~C   46 (46)
T 2emy_A            5 SSGTGENPYECHECGKAFSRKYQLISHQRTHAGEKP-SGPSSG   46 (46)
T ss_dssp             CCCCSSCCEECSSSCCEESSHHHHHHHHHHHTTSCC-SCSSCC
T ss_pred             CCCCCCcCcCCCCCCcccCcHHHHHHHHHHcCCCCC-CCCCCC
Confidence            345677889999999999999999999999988755 999987

>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.04  E-value=2.7e-10  Score=58.09  Aligned_cols=42  Identities=21%  Similarity=0.458  Sum_probs=36.8

Q ss_pred             CCCCCCCccccCccchhccChHHHHHHHHHHhCCCCceeCCCC
Q psy16578         42 DKPAGEDVFACPKCSKTYLRQYTLNAHLRYECGKRPKFKCPHC   84 (177)
Q Consensus        42 ~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C   84 (177)
                      ....++++|.|.+|++.|....+|..|++.|.+.++ |.|++|
T Consensus         5 ~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~-~~C~~c   46 (46)
T 2emh_A            5 SSGTGERPYICTVCGKAFTDRSNLIKHQKIHTGEKP-SGPSSG   46 (46)
T ss_dssp             CSCSCCCSEECTTTCCEESSHHHHHHHHHHHHCSSC-SSSCCC
T ss_pred             CCCCCCCCcCCCCCCchhCCHHHHHHHHHhcCCCCC-CCCCCC
Confidence            345677889999999999999999999999998755 999987

>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.04  E-value=3.6e-10  Score=57.62  Aligned_cols=42  Identities=21%  Similarity=0.449  Sum_probs=36.5

Q ss_pred             CCCCCCCccccCccchhccChHHHHHHHHHHhCCCCceeCCCC
Q psy16578         42 DKPAGEDVFACPKCSKTYLRQYTLNAHLRYECGKRPKFKCPHC   84 (177)
Q Consensus        42 ~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C   84 (177)
                      ....++++|.|.+|++.|.....|..|++.|.+.++ |.|.+|
T Consensus         5 ~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~-~~C~~C   46 (46)
T 2eov_A            5 SSGTGEKPYKCSDCGKSFTWKSRLRIHQKCHTGERH-SGPSSG   46 (46)
T ss_dssp             CCCSSCCSCBCSSSCCBCSSHHHHHHHHHHHSCCSS-CCSCCC
T ss_pred             CCCCCCCCccCCccChhhCCHHHHHHHHHhcCCCCC-CCCCCC
Confidence            345677889999999999999999999999988755 999987

>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.04  E-value=2.1e-10  Score=58.53  Aligned_cols=40  Identities=20%  Similarity=0.466  Sum_probs=35.0

Q ss_pred             ccCCCCceecCCccccccChhHHHHHHHHhhCCCCCccCCC
Q psy16578        117 NSQLNGSFICPKCSNRYVYKHNLKQHLKFECGVEPQFKCPY  157 (177)
Q Consensus       117 ~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~  157 (177)
                      .+.++++|.|..|++.|.....|..|+++|++ +++|.|.+
T Consensus         6 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~-~~p~~C~~   45 (46)
T 2yts_A            6 SGTGEKPYICNECGKSFIQKSHLNRHRRIHTG-EKPSGPSS   45 (46)
T ss_dssp             CCCSCCSEECSSSCCEESSHHHHHHHGGGTSS-CCSSCCCC
T ss_pred             CCCCCcCEECCCCChhhCChHHHHHHHHhcCC-CCCcCCCC
Confidence            34568899999999999999999999999988 56699974

>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.04  E-value=2.1e-10  Score=58.53  Aligned_cols=42  Identities=21%  Similarity=0.465  Sum_probs=36.7

Q ss_pred             CCCCCCCccccCccchhccChHHHHHHHHHHhCCCCceeCCCC
Q psy16578         42 DKPAGEDVFACPKCSKTYLRQYTLNAHLRYECGKRPKFKCPHC   84 (177)
Q Consensus        42 ~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C   84 (177)
                      ....++++|.|.+|++.|....+|..|++.|.+.++ |.|.+|
T Consensus         5 ~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~-~~C~~C   46 (46)
T 2em7_A            5 SSGTGEKPYKCEECGKGFICRRDLYTHHMVHTGEKP-SGPSSG   46 (46)
T ss_dssp             CSSSCCCSEECSSSCCEESCHHHHHHHGGGGTTCCC-SSTTCC
T ss_pred             CCCCCCcCccCCCccchhCCHHHHHHHHHHhCCCCC-CCCCCC
Confidence            445677889999999999999999999999988755 999987

>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.04  E-value=1.8e-10  Score=58.75  Aligned_cols=40  Identities=15%  Similarity=0.313  Sum_probs=34.8

Q ss_pred             ccCCCCceecCCccccccChhHHHHHHHHhhCCCCCccCCC
Q psy16578        117 NSQLNGSFICPKCSNRYVYKHNLKQHLKFECGVEPQFKCPY  157 (177)
Q Consensus       117 ~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~  157 (177)
                      .+.++++|.|..|++.|.....|..|+++|++ +++|.|.+
T Consensus         6 ~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~-~k~~~C~~   45 (46)
T 2yti_A            6 SGTGEKPYKCNECGKVFTQNSHLARHRGIHTG-EKPSGPSS   45 (46)
T ss_dssp             CCSCCCTTCCSSSCCCCSSHHHHHHHHTTTSC-SCCSSTTC
T ss_pred             CCCCCcCeECCCCCcccCChhHHHHHhHhcCC-CCCCCCCC
Confidence            34568899999999999999999999999998 56699974

>1yui_A GAGA-factor; complex (DNA-binding protein/DNA), chromatin remodeling, DNA binding protein/DNA complex; HET: DNA; NMR {Drosophila melanogaster} SCOP: g.37.1.1 PDB: 1yuj_A*

Probab=99.04  E-value=7.1e-11  Score=62.55  Aligned_cols=52  Identities=15%  Similarity=0.185  Sum_probs=43.1

Q ss_pred             ccccccchHHHhHHHHhcCCCCCCCCccccccccCCCCceecCCccccccChhHHHHHHHHhhCCCCCcc
Q psy16578         85 NKKCHQKCNLKSHIALKHDQLLAPLAPRSYRRNSQLNGSFICPKCSNRYVYKHNLKQHLKFECGVEPQFK  154 (177)
Q Consensus        85 ~~~f~~~~~l~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~  154 (177)
                      ++.|.....|..|++.|.                 ++++|.|..|++.|.....|..|+++|++ +++|.
T Consensus         3 ~k~~~~~~~l~~h~~~H~-----------------~~k~~~C~~C~k~f~~~~~L~~H~~~H~~-~kp~~   54 (54)
T 1yui_A            3 AKRAKHPPGTEKPRSRSQ-----------------SEQPATCPICYAVIRQSRNLRRHLELRHF-AKPGV   54 (54)
T ss_dssp             CCCCSCSSCCCCCHHHHT-----------------SSCCEECTTTCCEESSHHHHHHHHHHHTT-TSCCC
T ss_pred             ccccCCCcchhhHHHhcC-----------------CCCCccCCCCCcccCCHHHHHHHHHHhcc-CCCCC
Confidence            356777778888887665                 46899999999999999999999999998 45463

>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.04  E-value=2.6e-10  Score=58.14  Aligned_cols=42  Identities=24%  Similarity=0.510  Sum_probs=36.9

Q ss_pred             CCCCCCCccccCccchhccChHHHHHHHHHHhCCCCceeCCCC
Q psy16578         42 DKPAGEDVFACPKCSKTYLRQYTLNAHLRYECGKRPKFKCPHC   84 (177)
Q Consensus        42 ~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C   84 (177)
                      ....++++|.|.+|++.|.....|..|++.|.+.++ |.|.+|
T Consensus         5 ~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~-~~C~~C   46 (46)
T 2ytr_A            5 SSGTGEKPYKCNECGKAFSQTSKLARHQRIHTGEKP-SGPSSG   46 (46)
T ss_dssp             CCCSSCCTTCCTTTCCCCSSHHHHHHHHTTTTTCSC-CCSCCC
T ss_pred             cCCCCCcCcCCCCCCCccCCHHHHHHHHHhcCCCCC-CCCCCC
Confidence            455678889999999999999999999999988755 999987

>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.04  E-value=3e-10  Score=57.94  Aligned_cols=42  Identities=26%  Similarity=0.553  Sum_probs=36.7

Q ss_pred             CCCCCCCccccCccchhccChHHHHHHHHHHhCCCCceeCCCC
Q psy16578         42 DKPAGEDVFACPKCSKTYLRQYTLNAHLRYECGKRPKFKCPHC   84 (177)
Q Consensus        42 ~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C   84 (177)
                      ....++++|.|.+|++.|....+|..|++.|.+.++ |.|.+|
T Consensus         5 ~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~-~~C~~C   46 (46)
T 2eml_A            5 SSGTGEKPYECSVCGKAFSHRQSLSVHQRIHSGKKP-SGPSSG   46 (46)
T ss_dssp             CCCSSCCSEECSSSCCEESSHHHHHHHHGGGSSCCC-SCSSCC
T ss_pred             CCcCCCCCeeCCCcCCccCCHHHHHHHHHHhcCCCC-CCCCCC
Confidence            345677889999999999999999999999988755 999987

>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.04  E-value=2.5e-10  Score=58.23  Aligned_cols=40  Identities=23%  Similarity=0.404  Sum_probs=35.0

Q ss_pred             ccCCCCceecCCccccccChhHHHHHHHHhhCCCCCccCCC
Q psy16578        117 NSQLNGSFICPKCSNRYVYKHNLKQHLKFECGVEPQFKCPY  157 (177)
Q Consensus       117 ~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~  157 (177)
                      .+.++++|.|..|++.|.....|..|+++|++ +++|.|++
T Consensus         6 ~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~-~k~~~C~~   45 (46)
T 2yrj_A            6 SGTGEKPYRCGECGKAFAQKANLTQHQRIHTG-EKPSGPSS   45 (46)
T ss_dssp             CCCCCCCEECSSSCCEESSHHHHHHHHTTTSS-CCSSCSCC
T ss_pred             CCCCCCCeECCCCCCccCCHHHHHHHHHHcCC-CCCCCCCC
Confidence            34568899999999999999999999999988 56699974

>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.04  E-value=2.2e-10  Score=58.43  Aligned_cols=42  Identities=24%  Similarity=0.496  Sum_probs=36.6

Q ss_pred             CCCCCCCccccCccchhccChHHHHHHHHHHhCCCCceeCCCC
Q psy16578         42 DKPAGEDVFACPKCSKTYLRQYTLNAHLRYECGKRPKFKCPHC   84 (177)
Q Consensus        42 ~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C   84 (177)
                      ....++++|.|.+|++.|....+|..|++.|.+.++ |.|.+|
T Consensus         5 ~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~-~~C~~C   46 (46)
T 2ene_A            5 SSGTGEKPYKCNECGKVFRHNSYLSRHQRIHTGEKP-SGPSSG   46 (46)
T ss_dssp             SSCCCSSSEECSSSCCEESSHHHHHHHHTTTCCCCC-CSCCCC
T ss_pred             cCCCCCCCeECCCCCchhCChHHHHHHHhhcCCCCC-CCCCCC
Confidence            345677889999999999999999999999987755 999987

>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.03  E-value=2.2e-10  Score=58.48  Aligned_cols=40  Identities=15%  Similarity=0.334  Sum_probs=34.9

Q ss_pred             ccCCCCceecCCccccccChhHHHHHHHHhhCCCCCccCCC
Q psy16578        117 NSQLNGSFICPKCSNRYVYKHNLKQHLKFECGVEPQFKCPY  157 (177)
Q Consensus       117 ~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~  157 (177)
                      .+.++++|.|..|++.|.....|..|+++|++ +++|.|++
T Consensus         6 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~-~k~~~C~~   45 (46)
T 2eq2_A            6 SGTGGKPYQCNECGKAFSQTSKLARHQRVHTG-EKPSGPSS   45 (46)
T ss_dssp             SSSSSCSSSCCSSCCCCSSHHHHHHHGGGGCC-CCCCCCCC
T ss_pred             ccCCCCCeECCCCCcccCCHHHHHHHHHHcCC-CCCCCCCC
Confidence            34568899999999999999999999999988 56699974

>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.03  E-value=2.9e-10  Score=57.98  Aligned_cols=40  Identities=20%  Similarity=0.361  Sum_probs=35.0

Q ss_pred             ccCCCCceecCCccccccChhHHHHHHHHhhCCCCCccCCC
Q psy16578        117 NSQLNGSFICPKCSNRYVYKHNLKQHLKFECGVEPQFKCPY  157 (177)
Q Consensus       117 ~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~  157 (177)
                      .+.++++|.|..|++.|.....|..|+++|++ +++|.|+.
T Consensus         6 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~-~~~~~C~~   45 (46)
T 2eoz_A            6 SGTGEKPYSCNVCGKAFVLSAHLNQHLRVHTQ-ETLSGPSS   45 (46)
T ss_dssp             CCSSCCSEEETTTTEEESSHHHHHHHHHHHSS-CCSSSCCC
T ss_pred             cCCCCCCeECcccChhhCCHHHHHHHHHHhCC-CCCCCCCC
Confidence            34568899999999999999999999999998 56699973

>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.03  E-value=1.9e-10  Score=58.72  Aligned_cols=42  Identities=26%  Similarity=0.555  Sum_probs=36.4

Q ss_pred             CCCCCCCccccCccchhccChHHHHHHHHHHhCCCCceeCCCC
Q psy16578         42 DKPAGEDVFACPKCSKTYLRQYTLNAHLRYECGKRPKFKCPHC   84 (177)
Q Consensus        42 ~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C   84 (177)
                      ....++++|.|.+|++.|....+|..|++.|.+.++ |.|++|
T Consensus         5 ~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~-~~C~~c   46 (46)
T 2emf_A            5 SSGTGGKHFECTECGKAFTRKSTLSMHQKIHTGEKP-SGPSSG   46 (46)
T ss_dssp             SSSSSSCCEECSSSCCEESCHHHHHHHGGGTSCSSC-SCCCCC
T ss_pred             cccCCCCCeECCCCCchhCCHHHHHHHHHHhCCCCC-CCCCCC
Confidence            445677889999999999999999999999987755 999987

>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.03  E-value=3.2e-10  Score=57.20  Aligned_cols=39  Identities=21%  Similarity=0.354  Sum_probs=34.0

Q ss_pred             ccCCCCceecCCccccccChhHHHHHHHHhhCCCCCccCC
Q psy16578        117 NSQLNGSFICPKCSNRYVYKHNLKQHLKFECGVEPQFKCP  156 (177)
Q Consensus       117 ~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~  156 (177)
                      .+.++++|.|..|++.|.....|..|+++|++ +++|.|+
T Consensus         6 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~-~~~~~C~   44 (44)
T 2eof_A            6 SGTGEKPYECNECQKAFNTKSNLMVHQRTHTG-ESGPSSG   44 (44)
T ss_dssp             CCSCCCSEECTTTCCEESCHHHHHHHHHHTTT-SSCSCCC
T ss_pred             CCCCCCCeECCCCCcccCCHhHHHHHHHHhCC-CCCCCCC
Confidence            34568899999999999999999999999988 5569985

>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.03  E-value=2.3e-10  Score=58.39  Aligned_cols=40  Identities=18%  Similarity=0.343  Sum_probs=35.0

Q ss_pred             ccCCCCceecCCccccccChhHHHHHHHHhhCCCCCccCCC
Q psy16578        117 NSQLNGSFICPKCSNRYVYKHNLKQHLKFECGVEPQFKCPY  157 (177)
Q Consensus       117 ~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~  157 (177)
                      .+.++++|.|..|++.|.....|..|+++|++ +++|.|++
T Consensus         6 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~-~k~~~C~~   45 (46)
T 2emz_A            6 SGSGERPFKCNECGKGFGRRSHLAGHLRLHSR-EKSSGPSS   45 (46)
T ss_dssp             CSSCCCSCCCSSSCCCCSSHHHHHHHHHHHHH-TTCCCSCC
T ss_pred             CCCCCCCeECCCCCcccCCHHHHHHHHHHhCC-CCCCCCCC
Confidence            44578999999999999999999999999998 55699974

>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A

Probab=99.03  E-value=3.3e-10  Score=57.77  Aligned_cols=42  Identities=24%  Similarity=0.530  Sum_probs=36.6

Q ss_pred             CCCCCCCccccCccchhccChHHHHHHHHHHhCCCCceeCCCC
Q psy16578         42 DKPAGEDVFACPKCSKTYLRQYTLNAHLRYECGKRPKFKCPHC   84 (177)
Q Consensus        42 ~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C   84 (177)
                      ....++++|.|.+|++.|....+|..|++.|.+.++ |.|++|
T Consensus         5 ~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~-~~C~~c   46 (46)
T 2ema_A            5 SSGTGEKRYKCNECGKVFSRNSQLSQHQKIHTGEKP-SGPSSG   46 (46)
T ss_dssp             SSCTTSCCEECSSSCCEESSHHHHHHHHTGGGCCCC-CSSSCC
T ss_pred             cCCCCCcCcCCCCCcchhCCHHHHHHHHHhcCCCCC-CCCCCC
Confidence            345677889999999999999999999999988755 999987

>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.03  E-value=2.5e-10  Score=58.28  Aligned_cols=40  Identities=15%  Similarity=0.318  Sum_probs=34.9

Q ss_pred             ccCCCCceecCCccccccChhHHHHHHHHhhCCCCCccCCC
Q psy16578        117 NSQLNGSFICPKCSNRYVYKHNLKQHLKFECGVEPQFKCPY  157 (177)
Q Consensus       117 ~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~  157 (177)
                      .+.++++|.|..|++.|.....|..|+++|++ +++|.|++
T Consensus         6 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~-~k~~~C~~   45 (46)
T 2em6_A            6 SGMGEKCYKCDVCGKEFSQSSHLQTHQRVHTG-EKPSGPSS   45 (46)
T ss_dssp             CCCCCCCCBCSSSCCBCSSHHHHHHHHTTTSS-SCCCCTTC
T ss_pred             ccCCCCCeECCCCCcccCCHHHHHHHHHHcCC-CCCCCCCC
Confidence            34568899999999999999999999999988 56699974

>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A

Probab=99.03  E-value=6.3e-11  Score=57.55  Aligned_cols=35  Identities=23%  Similarity=0.392  Sum_probs=26.8

Q ss_pred             HHHHhhCCCCCccCCCCcccccchhHHHHHHhhhcC
Q psy16578        142 HLKFECGVEPQFKCPYCDKRCKLKGNLMSHIALKHT  177 (177)
Q Consensus       142 H~~~h~~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~  177 (177)
                      |+++|++ +++|.|++|++.|...++|.+|+++|++
T Consensus         2 H~~~h~~-~k~~~C~~C~k~f~~~~~l~~H~~~H~~   36 (37)
T 1p7a_A            2 STRGSTG-IKPFQCPDCDRSFSRSDHLALHRKRHML   36 (37)
T ss_dssp             CSSTTCC-SSSBCCTTTCCCBSSHHHHHHHHGGGTC
T ss_pred             CCCcCCC-CCCccCCCCCcccCcHHHHHHHHHHhcc
Confidence            5566777 5558888888888888888888887764

>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.03  E-value=2.9e-10  Score=58.01  Aligned_cols=43  Identities=28%  Similarity=0.546  Sum_probs=37.3

Q ss_pred             CCCCCCCCccccCccchhccChHHHHHHHHHHhCCCCceeCCCC
Q psy16578         41 EDKPAGEDVFACPKCSKTYLRQYTLNAHLRYECGKRPKFKCPHC   84 (177)
Q Consensus        41 ~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C   84 (177)
                      .....++++|.|.+|++.|....+|..|++.|.+.++ |.|.+|
T Consensus         4 ~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~-~~C~~C   46 (46)
T 2en6_A            4 GSSGSGEKPYGCNECGKTFSQKSILSAHQRTHTGEKP-SGPSSG   46 (46)
T ss_dssp             SCCCCSSCCEEETTTTEEESSHHHHHHHHHHHSSCCC-SSSCCC
T ss_pred             CCccCCCcCeECCCCCcccCchHHHHHHHHHcCCCCC-CCCCCC
Confidence            3456677889999999999999999999999988755 999987

>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.03  E-value=2.1e-10  Score=58.56  Aligned_cols=40  Identities=18%  Similarity=0.319  Sum_probs=34.9

Q ss_pred             ccCCCCceecCCccccccChhHHHHHHHHhhCCCCCccCCC
Q psy16578        117 NSQLNGSFICPKCSNRYVYKHNLKQHLKFECGVEPQFKCPY  157 (177)
Q Consensus       117 ~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~  157 (177)
                      .+.++++|.|..|++.|.....|..|+++|++ +++|.|+.
T Consensus         6 ~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~-~k~~~C~~   45 (46)
T 2enh_A            6 SGTGEKPYECDVCRKAFSHHASLTQHQRVHSG-EKPSGPSS   45 (46)
T ss_dssp             CCCCSSSCBCTTTCCBCSSSHHHHHHGGGSCC-SCCCCCCC
T ss_pred             CcCCCCCcCCCCcCchhCCHHHHHHHHHHhCC-CCCCCCCC
Confidence            45578899999999999999999999999988 56699963

>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.03  E-value=2.7e-10  Score=58.08  Aligned_cols=42  Identities=19%  Similarity=0.445  Sum_probs=36.8

Q ss_pred             CCCCCCCccccCccchhccChHHHHHHHHHHhCCCCceeCCCC
Q psy16578         42 DKPAGEDVFACPKCSKTYLRQYTLNAHLRYECGKRPKFKCPHC   84 (177)
Q Consensus        42 ~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C   84 (177)
                      ....++++|.|.+|++.|....+|..|++.|.+.++ |.|++|
T Consensus         5 ~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~-~~C~~C   46 (46)
T 2ytn_A            5 SSGTGKKPYKCNECGKVFTQNSHLARHRGIHTGEKP-SGPSSG   46 (46)
T ss_dssp             CCCSCCSSCBCTTTCCBCSSHHHHHHHGGGTSCCCC-CSCCCC
T ss_pred             cCCCCCcCeECCCCCCeeCCHHHHHHHhhhcCCCCC-CCCCCC
Confidence            345677889999999999999999999999988755 999987

>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.03  E-value=3.1e-10  Score=57.84  Aligned_cols=42  Identities=24%  Similarity=0.493  Sum_probs=36.7

Q ss_pred             CCCCCCCccccCccchhccChHHHHHHHHHHhCCCCceeCCCC
Q psy16578         42 DKPAGEDVFACPKCSKTYLRQYTLNAHLRYECGKRPKFKCPHC   84 (177)
Q Consensus        42 ~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C   84 (177)
                      ....++++|.|.+|++.|....+|..|++.|.+.++ |.|++|
T Consensus         5 ~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~~~-~~C~~C   46 (46)
T 2eoe_A            5 SSGTGEKPYKCNECGKVFTQNSHLANHQRIHTGVKP-SGPSSG   46 (46)
T ss_dssp             SCCCCCCSSEETTTTEECSSHHHHHHHHGGGSCCCS-CSSCCC
T ss_pred             CCCCCCCCeECCCcChhhCCHHHHHHHHHHcCCCCC-CCCCCC
Confidence            345677889999999999999999999999988755 999987

>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.03  E-value=3.9e-10  Score=57.53  Aligned_cols=39  Identities=18%  Similarity=0.351  Sum_probs=34.6

Q ss_pred             ccCCCCceecCCccccccChhHHHHHHHHhhCCCCCccCC
Q psy16578        117 NSQLNGSFICPKCSNRYVYKHNLKQHLKFECGVEPQFKCP  156 (177)
Q Consensus       117 ~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~  156 (177)
                      .+.++++|.|..|++.|.....|..|+++|++ +++|.|+
T Consensus         6 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~-~k~~~C~   44 (46)
T 2yto_A            6 SGTGEKPYKCSDCGKAFTRKSGLHIHQQSHTG-ERHSGPS   44 (46)
T ss_dssp             CCCSCCCEECSSSCCEESSHHHHHHHHHHHTC-CCBTTTB
T ss_pred             ccCCCCCEECcccCCccCCHhHHHHHHHHcCC-CCCCCCC
Confidence            34568899999999999999999999999998 5669996

>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.02  E-value=2.4e-10  Score=58.28  Aligned_cols=40  Identities=18%  Similarity=0.316  Sum_probs=34.8

Q ss_pred             ccCCCCceecCCccccccChhHHHHHHHHhhCCCCCccCCC
Q psy16578        117 NSQLNGSFICPKCSNRYVYKHNLKQHLKFECGVEPQFKCPY  157 (177)
Q Consensus       117 ~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~  157 (177)
                      .+.++++|.|..|++.|.....|..|+++|++ +++|.|++
T Consensus         6 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~-~k~~~C~~   45 (46)
T 2eq1_A            6 SGTGEKPYKCNECGKAFRAHSNLTTHQVIHTG-EKPSGPSS   45 (46)
T ss_dssp             CCCCSCCCCCTTTTCCCSSHHHHHHHHTTTCC-SCCSSCCC
T ss_pred             ccCCCCCeECCcCChhhCCHHHHHHHHHHhCC-CCCCCCCC
Confidence            34568899999999999999999999999988 55699974

>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.02  E-value=3.3e-10  Score=57.75  Aligned_cols=43  Identities=23%  Similarity=0.465  Sum_probs=37.1

Q ss_pred             CCCCCCCCccccCccchhccChHHHHHHHHHHhCCCCceeCCCC
Q psy16578         41 EDKPAGEDVFACPKCSKTYLRQYTLNAHLRYECGKRPKFKCPHC   84 (177)
Q Consensus        41 ~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C   84 (177)
                      .....++++|.|.+|++.|....+|..|++.|.+.++ |.|.+|
T Consensus         4 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~-~~C~~C   46 (46)
T 2enc_A            4 GSSGSGEKPFKCEECGKGFYTNSQCYSHQRSHSGEKP-SGPSSG   46 (46)
T ss_dssp             SSCCCCCCSEECSSSCCEESSHHHHHHHHHHSCCSSC-CSSCCC
T ss_pred             CCCCCCCCCcCCCCCCCcCCChHHHHHHHHHhCCCCC-CCCCCC
Confidence            3456677889999999999999999999999987755 999987

>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens}

Probab=99.02  E-value=3.1e-10  Score=57.86  Aligned_cols=42  Identities=19%  Similarity=0.433  Sum_probs=36.6

Q ss_pred             CCCCCCCccccCccchhccChHHHHHHHHHHhCCCCceeCCCC
Q psy16578         42 DKPAGEDVFACPKCSKTYLRQYTLNAHLRYECGKRPKFKCPHC   84 (177)
Q Consensus        42 ~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C   84 (177)
                      ....++++|.|.+|++.|....+|..|++.|.+.++ |.|++|
T Consensus         5 ~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~~~-~~C~~C   46 (46)
T 2em0_A            5 SSGMGEKTWKCRECDMCFSQASSLRLHQNVHVGEKP-SGPSSG   46 (46)
T ss_dssp             CCSCCCCCCCCSSSCCCCSSHHHHHHHGGGGSSSSC-SCSSCC
T ss_pred             CccCCCcCeECCCCCcccCCHHHHHHHHHHcCCCCC-cCCCCC
Confidence            345677889999999999999999999999987755 999987

>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yta_A

Probab=99.02  E-value=3.7e-10  Score=56.36  Aligned_cols=38  Identities=13%  Similarity=0.278  Sum_probs=33.1

Q ss_pred             ccCCCCceecCCccccccChhHHHHHHHHhhCCCCCccC
Q psy16578        117 NSQLNGSFICPKCSNRYVYKHNLKQHLKFECGVEPQFKC  155 (177)
Q Consensus       117 ~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C  155 (177)
                      .+.++++|.|..|++.|.....|..|+++|++ +++|.|
T Consensus         5 ~H~~~~~~~C~~C~k~f~~~~~l~~H~~~H~~-~k~~~C   42 (42)
T 2epc_A            5 SSGGETPYLCGQCGKSFTQRGSLAVHQRSCSQ-SGPSSG   42 (42)
T ss_dssp             CCCSSCCEECSSSCCEESSHHHHHHHHHHTTC-CCCCCC
T ss_pred             cCCCCCCeECCCCCcccCCHHHHHHHhhhcCC-CCCCCC
Confidence            34567899999999999999999999999988 556987

>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.02  E-value=2.2e-10  Score=56.92  Aligned_cols=38  Identities=18%  Similarity=0.337  Sum_probs=33.1

Q ss_pred             ccCCCCceecCCccccccChhHHHHHHHHhhCCCCCccC
Q psy16578        117 NSQLNGSFICPKCSNRYVYKHNLKQHLKFECGVEPQFKC  155 (177)
Q Consensus       117 ~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C  155 (177)
                      .+.++++|.|..|++.|.....|..|+++|++ +++|.|
T Consensus         4 ~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~-~k~~~C   41 (41)
T 2ept_A            4 GSSGQRVYECQECGKSFRQKGSLTLHERIHTG-SGPSSG   41 (41)
T ss_dssp             SCCCCCCEECSSSCCEESSHHHHHHHGGGCCC-CSCSCC
T ss_pred             ccCCCCCeECCCCCCCcCCHHHHHHHHHHhCC-CCCcCC
Confidence            34578899999999999999999999999988 556987

>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.02  E-value=4e-10  Score=57.46  Aligned_cols=42  Identities=21%  Similarity=0.412  Sum_probs=36.6

Q ss_pred             CCCCCCCccccCccchhccChHHHHHHHHHHhCCCCceeCCCC
Q psy16578         42 DKPAGEDVFACPKCSKTYLRQYTLNAHLRYECGKRPKFKCPHC   84 (177)
Q Consensus        42 ~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C   84 (177)
                      ....++++|.|.+|++.|....+|..|++.|.+.++ |.|..|
T Consensus         5 ~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~-~~C~~C   46 (46)
T 2eoo_A            5 SSGSGERPYGCNECGKNFGRHSHLIEHLKRHFREKS-SGPSSG   46 (46)
T ss_dssp             CCCSCCCCEECSSSCCEESSHHHHHHHHHHHHSTTS-SCCSCC
T ss_pred             CCCCCCCCEEccccCcccCCHHHHHHHHHHHcCCCC-CCCCCC
Confidence            345677889999999999999999999999988755 999987

>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.02  E-value=3.7e-10  Score=56.99  Aligned_cols=41  Identities=22%  Similarity=0.406  Sum_probs=35.9

Q ss_pred             CCCCCCccccCccchhccChHHHHHHHHHHhCCCCceeCCCC
Q psy16578         43 KPAGEDVFACPKCSKTYLRQYTLNAHLRYECGKRPKFKCPHC   84 (177)
Q Consensus        43 ~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C   84 (177)
                      ...++++|.|.+|++.|....+|..|++.|.+.++ |.|.+|
T Consensus         4 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~-~~C~~C   44 (44)
T 2emx_A            4 GSSGEKPFGCSCCEKAFSSKSYLLVHQQTHAEEKP-SGPSSG   44 (44)
T ss_dssp             CCSSCCCEECSSSSCEESSHHHHHHHHHHHTSSCS-CSCCCC
T ss_pred             CcCCCcCccCCCCCcccCCHHHHHHHHHHhCCCCC-CCCCCC
Confidence            35667889999999999999999999999988755 999987

>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.02  E-value=4.2e-10  Score=57.39  Aligned_cols=41  Identities=24%  Similarity=0.434  Sum_probs=36.0

Q ss_pred             CCCCCCccccCccchhccChHHHHHHHHHHhCCCCceeCCCC
Q psy16578         43 KPAGEDVFACPKCSKTYLRQYTLNAHLRYECGKRPKFKCPHC   84 (177)
Q Consensus        43 ~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C   84 (177)
                      ...++++|.|.+|++.|....+|..|++.|.+.++ |.|++|
T Consensus         6 ~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~-~~C~~C   46 (46)
T 2eoq_A            6 SGTGEKPFKCDICGKSFCGRSRLNRHSMVHTAEKP-SGPSSG   46 (46)
T ss_dssp             CSSSSCSCCCSSSCCCCSSHHHHHHHHHHTTCCCS-SSCCCC
T ss_pred             CCCCCCCcCCCcCCchhCCHHHHHHHHHHcCCCCC-CCCCCC
Confidence            45667889999999999999999999999988755 999987

>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.02  E-value=3.7e-10  Score=57.57  Aligned_cols=42  Identities=24%  Similarity=0.533  Sum_probs=36.5

Q ss_pred             CCCCCCCccccCccchhccChHHHHHHHHHHhCCCCceeCCCC
Q psy16578         42 DKPAGEDVFACPKCSKTYLRQYTLNAHLRYECGKRPKFKCPHC   84 (177)
Q Consensus        42 ~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C   84 (177)
                      ....++++|.|.+|++.|....+|..|++.|.+.++ |.|++|
T Consensus         5 ~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~-~~C~~c   46 (46)
T 2ytk_A            5 SSGSGEKPYKCNECGKVFTQNSHLTNHWRIHTGEKP-SGPSSG   46 (46)
T ss_dssp             CCSSSSCSEECSSSCCEESSHHHHHHHHHHHSSSSC-SSCCCC
T ss_pred             ccCCCCCCEeCCcCCCccCCHHHHHHHHHHHCCCCC-CCCCCC
Confidence            345677889999999999999999999999988755 999987

>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.02  E-value=3e-10  Score=57.96  Aligned_cols=42  Identities=19%  Similarity=0.404  Sum_probs=36.4

Q ss_pred             CCCCCCCccccCccchhccChHHHHHHHHHHhCCCCceeCCCC
Q psy16578         42 DKPAGEDVFACPKCSKTYLRQYTLNAHLRYECGKRPKFKCPHC   84 (177)
Q Consensus        42 ~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C   84 (177)
                      ....++++|.|.+|++.|....+|..|++.|.+.++ |.|++|
T Consensus         5 ~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~-~~C~~C   46 (46)
T 2em5_A            5 SSGSSTKSHQCHECGRGFTLKSHLNQHQRIHTGEKP-SGPSSG   46 (46)
T ss_dssp             CCCCCSCSEECSSSCCEESSHHHHHHHHTTTSCSCC-SSCCCC
T ss_pred             CCCCCCCCeECCcCCCccCCHHHHHHHHHHhCCCCC-CCCCCC
Confidence            345677889999999999999999999999887755 999987

>2eou_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.02  E-value=3.8e-10  Score=56.98  Aligned_cols=39  Identities=15%  Similarity=0.267  Sum_probs=34.1

Q ss_pred             ccCCCCceecCCccccccChhHHHHHHHHhhCCCCCccCC
Q psy16578        117 NSQLNGSFICPKCSNRYVYKHNLKQHLKFECGVEPQFKCP  156 (177)
Q Consensus       117 ~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~  156 (177)
                      .+.++++|.|..|++.|.....|..|+++|++ +++|.|+
T Consensus         6 ~h~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~-~k~~~C~   44 (44)
T 2eou_A            6 SGAAKTTSECQECGKIFRHSSLLIEHQALHAG-ESGPSSG   44 (44)
T ss_dssp             SCSSSCCCCCTTTCCCCSSHHHHHHHHHHHTT-SCCCCCC
T ss_pred             CCCCCcCeECCCCCcccCCHHHHHHHHHHHCC-CCCCCCC
Confidence            34568899999999999999999999999998 5569985

>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.02  E-value=3.9e-10  Score=56.90  Aligned_cols=39  Identities=18%  Similarity=0.331  Sum_probs=33.9

Q ss_pred             ccCCCCceecCCccccccChhHHHHHHHHhhCCCCCccCC
Q psy16578        117 NSQLNGSFICPKCSNRYVYKHNLKQHLKFECGVEPQFKCP  156 (177)
Q Consensus       117 ~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~  156 (177)
                      .+.++++|.|..|++.|.....|..|+++|++ +++|.|.
T Consensus         6 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~-~~~~~C~   44 (44)
T 2yu5_A            6 SGAGENPFKCSKCDRVFTQRNYLVQHERTHAR-KSGPSSG   44 (44)
T ss_dssp             CCSCCCSEECSSSSCEESSSHHHHHHHHHCCC-CCSSCCC
T ss_pred             ccCCCCCeECCCCCchhCCHHHHHHHhHhcCC-CCCCCCC
Confidence            34578899999999999999999999999988 5669884

>2emb_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.01  E-value=3.1e-10  Score=57.32  Aligned_cols=39  Identities=18%  Similarity=0.370  Sum_probs=33.8

Q ss_pred             ccCCCCceecCCccccccChhHHHHHHHHhhCCCCCccCC
Q psy16578        117 NSQLNGSFICPKCSNRYVYKHNLKQHLKFECGVEPQFKCP  156 (177)
Q Consensus       117 ~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~  156 (177)
                      .+.++++|.|..|++.|.....|..|+++|++ +++|.|+
T Consensus         6 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~-~~~~~C~   44 (44)
T 2emb_A            6 SGHTRKRYECSKCQATFNLRKHLIQHQKTHAA-KSGPSSG   44 (44)
T ss_dssp             CCCCCSSEECTTTCCEESCHHHHHHHGGGGCC-CCCTTCC
T ss_pred             ccCCCCCeECCCCCCccCCHHHHHHHHHHcCC-CCCcCCC
Confidence            34567899999999999999999999999988 5569985

>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.01  E-value=3.4e-10  Score=57.74  Aligned_cols=42  Identities=24%  Similarity=0.487  Sum_probs=36.9

Q ss_pred             CCCCCCCccccCccchhccChHHHHHHHHHHhCCCCceeCCCC
Q psy16578         42 DKPAGEDVFACPKCSKTYLRQYTLNAHLRYECGKRPKFKCPHC   84 (177)
Q Consensus        42 ~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C   84 (177)
                      ....++++|.|.+|++.|....+|..|++.|.+.++ |.|++|
T Consensus         5 ~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~-~~C~~C   46 (46)
T 2yu8_A            5 SSGTGEKPYKCNECGKVFTQNSHLARHRRVHTGGKP-SGPSSG   46 (46)
T ss_dssp             CCCCCCSSEECSSSCCEESSSHHHHHHTHHHHSCCC-SCSCCC
T ss_pred             cCCCCCCCeECCcCCchhCCHHHHHHHHHhcCCCCC-CCCCCC
Confidence            345677889999999999999999999999998855 999987

>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A

Probab=99.01  E-value=3.4e-10  Score=57.70  Aligned_cols=42  Identities=24%  Similarity=0.470  Sum_probs=36.7

Q ss_pred             CCCCCCCccccCccchhccChHHHHHHHHHHhCCCCceeCCCC
Q psy16578         42 DKPAGEDVFACPKCSKTYLRQYTLNAHLRYECGKRPKFKCPHC   84 (177)
Q Consensus        42 ~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C   84 (177)
                      ....++++|.|.+|++.|.....|..|++.|.+.++ |.|.+|
T Consensus         5 ~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~-~~C~~C   46 (46)
T 2em9_A            5 SSGTGEKPYNCKECGKSFRWASCLLKHQRVHSGEKP-SGPSSG   46 (46)
T ss_dssp             CSCCCCCSEECSSSCCEESSHHHHHHHGGGGTSCCC-CSTTCC
T ss_pred             CCCCCCcCeECCccccccCChHHHHHHHHHhCCCCC-CCCCCC
Confidence            445677889999999999999999999999988755 999987

>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.01  E-value=4.3e-10  Score=57.33  Aligned_cols=42  Identities=24%  Similarity=0.428  Sum_probs=36.3

Q ss_pred             CCCCCCCccccCccchhccChHHHHHHHHHHhCCCCceeCCCC
Q psy16578         42 DKPAGEDVFACPKCSKTYLRQYTLNAHLRYECGKRPKFKCPHC   84 (177)
Q Consensus        42 ~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C   84 (177)
                      ....++++|.|.+|++.|.....|..|++.|.+.++ |.|++|
T Consensus         5 ~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~-~~C~~C   46 (46)
T 2eme_A            5 SSGSGEKPYVCDYCGKAFGLSAELVRHQRIHTGEKP-SGPSSG   46 (46)
T ss_dssp             CTTCCCCSEECSSSCCEESSHHHHHHHHGGGCCCSC-CSSCCC
T ss_pred             CCCCCCCCeECCCCChhhCCHHHHHHHHHhcCCCCC-CCCCCC
Confidence            345677889999999999999999999999988755 999987

>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.01  E-value=3.2e-10  Score=56.62  Aligned_cols=38  Identities=21%  Similarity=0.415  Sum_probs=33.1

Q ss_pred             ccCCCCceecCCccccccChhHHHHHHHHhhCCCCCccC
Q psy16578        117 NSQLNGSFICPKCSNRYVYKHNLKQHLKFECGVEPQFKC  155 (177)
Q Consensus       117 ~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C  155 (177)
                      .+.++++|.|..|++.|.....|..|+++|++ +++|.|
T Consensus         5 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~-~~~~~C   42 (42)
T 2en2_A            5 SSGGEKPYKCETCGARFVQVAHLRAHVLIHTG-SGPSSG   42 (42)
T ss_dssp             CCCSSCSEECTTTCCEESSHHHHHHHTHHHHS-CCSSCC
T ss_pred             ccCCCCCEeCCCcChhhCCHHHHHHHHHHcCC-CCCCCC
Confidence            34578899999999999999999999999998 556887

>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.01  E-value=3.9e-10  Score=57.48  Aligned_cols=42  Identities=24%  Similarity=0.413  Sum_probs=36.5

Q ss_pred             CCCCCCCccccCccchhccChHHHHHHHHHHhCCCCceeCCCC
Q psy16578         42 DKPAGEDVFACPKCSKTYLRQYTLNAHLRYECGKRPKFKCPHC   84 (177)
Q Consensus        42 ~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C   84 (177)
                      ....++++|.|.+|++.|....+|..|++.|.+.++ |.|+.|
T Consensus         5 ~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~-~~C~~C   46 (46)
T 2eop_A            5 SSGTGEKPHECRECGKSFSFNSQLIVHQRIHTGENP-SGPSSG   46 (46)
T ss_dssp             CSCCCCCSCBCTTTCCBCSSHHHHHHHHTTTTTSCC-SCCCCC
T ss_pred             cccCCCCCeeCCCCCchhCCHHHHHHHHHHcCCCCC-CCCCCC
Confidence            345677889999999999999999999999987755 999987

>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.01  E-value=3.3e-10  Score=57.78  Aligned_cols=42  Identities=24%  Similarity=0.476  Sum_probs=36.4

Q ss_pred             CCCCCCCccccCccchhccChHHHHHHHHHHhCCCCceeCCCC
Q psy16578         42 DKPAGEDVFACPKCSKTYLRQYTLNAHLRYECGKRPKFKCPHC   84 (177)
Q Consensus        42 ~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C   84 (177)
                      ....++++|.|.+|++.|....+|..|++.|.+.++ |.|.+|
T Consensus         5 ~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~-~~C~~c   46 (46)
T 2eq0_A            5 SSGTGEKPYKCHECGKVFRRNSHLARHQLIHTGEKP-SGPSSG   46 (46)
T ss_dssp             CCTTCCCCEECTTTCCEESSHHHHHHHHTTTCCCCC-SCCSCC
T ss_pred             cCCCCCCCeECCCCCchhCCHHHHHHHHHHcCCCCC-CCCCCC
Confidence            345677889999999999999999999999988755 999987

>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.00  E-value=4.7e-10  Score=57.18  Aligned_cols=42  Identities=19%  Similarity=0.414  Sum_probs=35.8

Q ss_pred             CCCCCCCccccCccchhccChHHHHHHHHHHhCCCCceeCCCC
Q psy16578         42 DKPAGEDVFACPKCSKTYLRQYTLNAHLRYECGKRPKFKCPHC   84 (177)
Q Consensus        42 ~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C   84 (177)
                      ....++++|.|.+|++.|....+|..|++.|.+.++ |.|++|
T Consensus         5 ~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~-~~C~~c   46 (46)
T 2ytj_A            5 SSGTGEKPYICAECGKAFTIRSNLIKHQKIHTKQKP-SGPSSG   46 (46)
T ss_dssp             CTTSSCCSEECSSSCCEESSHHHHHHHHHHTSCCCC-SSCSCC
T ss_pred             cCCCCCcCeECCCCChhhCCHHHHHHHHHHcCCCCC-CCCCCC
Confidence            345677889999999999999999999999887755 999886

>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.00  E-value=2.6e-10  Score=58.20  Aligned_cols=43  Identities=28%  Similarity=0.582  Sum_probs=37.1

Q ss_pred             CCCCCCCCccccCccchhccChHHHHHHHHHHhCCCCceeCCCC
Q psy16578         41 EDKPAGEDVFACPKCSKTYLRQYTLNAHLRYECGKRPKFKCPHC   84 (177)
Q Consensus        41 ~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C   84 (177)
                      .....++++|.|.+|++.|....+|..|++.|.+.++ |.|++|
T Consensus         4 ~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~-~~C~~C   46 (46)
T 2ysp_A            4 GSSGTGEKPYKCEKCGKGYNSKFNLDMHQKVHTGERP-SGPSSG   46 (46)
T ss_dssp             CCCCSSCCSEEETTTTEEESCHHHHHHHHTTSCSCCS-SCCSCC
T ss_pred             CcCCCCCCCeECCCCCCccCCHHHHHHHHHhhCCCCC-CCCCCC
Confidence            3455677889999999999999999999999988755 999987

>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.00  E-value=2.7e-10  Score=57.48  Aligned_cols=39  Identities=18%  Similarity=0.333  Sum_probs=33.8

Q ss_pred             ccCCCCceecCCccccccChhHHHHHHHHhhCCCCCccCC
Q psy16578        117 NSQLNGSFICPKCSNRYVYKHNLKQHLKFECGVEPQFKCP  156 (177)
Q Consensus       117 ~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~  156 (177)
                      .+.++++|.|..|++.|.....|..|+++|++ +++|.|+
T Consensus         6 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~-~~~~~C~   44 (44)
T 2eoj_A            6 SGTGENPYECCECGKVFSRKDQLVSHQKTHSG-QSGPSSG   44 (44)
T ss_dssp             SSSSCCSCEETTTTEECSSHHHHHHHHTTSSS-SCSCCCC
T ss_pred             ccCCCcCeeCCCCCCccCCHHHHHHHHHHcCC-CCCCCCC
Confidence            44578899999999999999999999999988 5569985

>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.00  E-value=3.3e-10  Score=57.16  Aligned_cols=39  Identities=18%  Similarity=0.330  Sum_probs=33.6

Q ss_pred             ccCCCCceecCCccccccChhHHHHHHHHhhCCCCCccCC
Q psy16578        117 NSQLNGSFICPKCSNRYVYKHNLKQHLKFECGVEPQFKCP  156 (177)
Q Consensus       117 ~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~  156 (177)
                      .+.++++|.|..|++.|.....|..|+++|++ +++|.|+
T Consensus         6 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~-~~~~~C~   44 (44)
T 2en7_A            6 SGTGMKPYVCNECGKAFRSKSYLIIHTRTHTG-ESGPSSG   44 (44)
T ss_dssp             CSSSSSSSCCTTTCCCCSSHHHHHHHHTTTCC-SSSSCCC
T ss_pred             CCCCCcCeECCCCCCccCCHHHHHHHhhhcCC-CCCCCCC
Confidence            34567899999999999999999999999988 5569885

>2yso_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.00  E-value=5.5e-10  Score=56.93  Aligned_cols=42  Identities=14%  Similarity=0.301  Sum_probs=36.5

Q ss_pred             CCCCCCCccccCccchhccChHHHHHHHHHHhCCCCceeCCCC
Q psy16578         42 DKPAGEDVFACPKCSKTYLRQYTLNAHLRYECGKRPKFKCPHC   84 (177)
Q Consensus        42 ~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C   84 (177)
                      ....++++|.|.+|++.|....+|..|++.|.+.++ |.|.+|
T Consensus         5 ~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~-~~C~~C   46 (46)
T 2yso_A            5 SSGSREKSHQCRECGEIFFQYVSLIEHQVLHMGQKN-SGPSSG   46 (46)
T ss_dssp             CCSSCCCCEECTTTCCEESSHHHHHHHHHHHSCCSC-CCTTCC
T ss_pred             cccCCCCCEEccccChhhCCHHHHHHHHHHhCCCCC-CCCCCC
Confidence            345677889999999999999999999999988755 999987

>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.00  E-value=4.5e-10  Score=57.24  Aligned_cols=42  Identities=21%  Similarity=0.523  Sum_probs=36.3

Q ss_pred             CCCCCCCccccCccchhccChHHHHHHHHHHhCCCCceeCCCC
Q psy16578         42 DKPAGEDVFACPKCSKTYLRQYTLNAHLRYECGKRPKFKCPHC   84 (177)
Q Consensus        42 ~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C   84 (177)
                      ....++++|.|.+|++.|....+|..|++.|.+.++ |.|++|
T Consensus         5 ~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~-~~C~~c   46 (46)
T 2ep2_A            5 SSGTGEKPYECSICGKSFTKKSQLHVHQQIHTGEKP-SGPSSG   46 (46)
T ss_dssp             SCSSCCCSEECSSSCCEESSHHHHHHHHHTTSSCCS-CCSCCC
T ss_pred             CCCCCCcCcCCCCCCcccCCHHHHHHHHHHhCCCCC-CCCCCC
Confidence            345677889999999999999999999999988755 999987

>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.99  E-value=4.8e-10  Score=57.12  Aligned_cols=42  Identities=19%  Similarity=0.310  Sum_probs=36.1

Q ss_pred             CCCCCCCccccCccchhccChHHHHHHHHHHhCCCCceeCCCC
Q psy16578         42 DKPAGEDVFACPKCSKTYLRQYTLNAHLRYECGKRPKFKCPHC   84 (177)
Q Consensus        42 ~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C   84 (177)
                      ....++++|.|.+|++.|....+|..|++.|.+.++ |.|.+|
T Consensus         5 ~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~-~~C~~C   46 (46)
T 2epw_A            5 SSGTGEKPCKCTECGKAFCWKSQLIMHQRTHVDDKH-SGPSSG   46 (46)
T ss_dssp             CCCCCCCSEECSSSCCEESSSHHHHHHHHHCCSCCC-SCCCCC
T ss_pred             ccCCCCCCeeCCCCCCccCCHHHHHHHHHHhCCCCC-CCCCCC
Confidence            345677889999999999999999999999887755 999987

>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A

Probab=98.99  E-value=3.8e-10  Score=57.52  Aligned_cols=42  Identities=24%  Similarity=0.441  Sum_probs=36.4

Q ss_pred             CCCCCCCccccCccchhccChHHHHHHHHHHhCCCCceeCCCC
Q psy16578         42 DKPAGEDVFACPKCSKTYLRQYTLNAHLRYECGKRPKFKCPHC   84 (177)
Q Consensus        42 ~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C   84 (177)
                      ....++++|.|.+|++.|....+|..|++.|.+.++ |.|+.|
T Consensus         5 ~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~-~~C~~C   46 (46)
T 2el4_A            5 SSGTGVKPYGCSQCAKTFSLKSQLIVHQRSHTGVKP-SGPSSG   46 (46)
T ss_dssp             CCSCCCCSEECSSSSCEESSHHHHHHHGGGSSSCCC-SCCTTC
T ss_pred             cCCCCCCceECCCCCchhCCHHHHHHHHHHhCCCCC-CCCCCC
Confidence            345677889999999999999999999999988755 999987

>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.99  E-value=3.1e-10  Score=56.70  Aligned_cols=38  Identities=24%  Similarity=0.424  Sum_probs=32.1

Q ss_pred             ccCCCCceecCCccccccChhHHHHHHHHhhCCCCCccC
Q psy16578        117 NSQLNGSFICPKCSNRYVYKHNLKQHLKFECGVEPQFKC  155 (177)
Q Consensus       117 ~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C  155 (177)
                      .+.++++|.|..|++.|...+.|..|+++|++ +++|.|
T Consensus         5 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~-~~~~~C   42 (42)
T 2eos_A            5 SSGGEKPYPCEICGTRFRHLQTLKSHLRIHTG-SGPSSG   42 (42)
T ss_dssp             CCSSSCCBCCSSSCCCBSSHHHHHHHTTTTSC-CSSTTC
T ss_pred             ccCCCCCEECCCCCCccCCHHHHHHHHHhcCC-CCCCCC
Confidence            34567899999999999999999999999988 555887

>2eoy_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.98  E-value=4.6e-10  Score=57.25  Aligned_cols=41  Identities=20%  Similarity=0.273  Sum_probs=34.6

Q ss_pred             ccCCCCceecCCccccccChhHHHHHHHHhhCCCCCccCCC
Q psy16578        117 NSQLNGSFICPKCSNRYVYKHNLKQHLKFECGVEPQFKCPY  157 (177)
Q Consensus       117 ~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~  157 (177)
                      .+.++++|.|..|++.|.....|..|+++|++.+++|.|++
T Consensus         6 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~~C~~   46 (46)
T 2eoy_A            6 SGQKEKCFKCNKCEKTFSCSKYLTQHERIHTRGVKSGPSSG   46 (46)
T ss_dssp             CCCCSCCEECSSSCCEESSSHHHHHHHTTCCSCCTTSSSCC
T ss_pred             ccCCCCCEECcCCCCcCCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            34578899999999999999999999999987244599974

>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.98  E-value=2.7e-10  Score=58.13  Aligned_cols=42  Identities=29%  Similarity=0.562  Sum_probs=36.4

Q ss_pred             CCCCCCCccccCccchhccChHHHHHHHHHHhCCCCceeCCCC
Q psy16578         42 DKPAGEDVFACPKCSKTYLRQYTLNAHLRYECGKRPKFKCPHC   84 (177)
Q Consensus        42 ~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C   84 (177)
                      ....++++|.|.+|++.|....+|..|++.|.+.++ |.|++|
T Consensus         5 ~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~-~~C~~C   46 (46)
T 2ytg_A            5 SSGTGEKPFKCGECGKSYNQRVHLTQHQRVHTGEKP-SGPSSG   46 (46)
T ss_dssp             CCCSSCCSEECTTTCCEESSSHHHHTTGGGGSSCCS-SCSCCC
T ss_pred             CCCCCCCCeECCCCCcccCCHHHHHHHHHHcCCCCC-CCCCCC
Confidence            345677889999999999999999999999988755 999987

>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.98  E-value=6.2e-10  Score=56.96  Aligned_cols=43  Identities=23%  Similarity=0.570  Sum_probs=36.9

Q ss_pred             CCCCCCCCccccCccchhccChHHHHHHHH-HHhCCCCceeCCCC
Q psy16578         41 EDKPAGEDVFACPKCSKTYLRQYTLNAHLR-YECGKRPKFKCPHC   84 (177)
Q Consensus        41 ~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~-~h~~~~~~~~C~~C   84 (177)
                      .....++++|.|.+|++.|....+|..|++ .|.+.++ |.|.+|
T Consensus         4 ~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~~H~~~k~-~~C~~C   47 (47)
T 2epx_A            4 GSSGTGKKPYECIECGKAFIQNTSLIRHWRYYHTGEKP-SGPSSG   47 (47)
T ss_dssp             CCCCCCCCSBCCSSSCCCBSSHHHHHHHHTTTTTTSCS-SSCCCC
T ss_pred             ccccCCCCCEECCccCchhCChHHHHHHhHhhcCCCCC-CCCCCC
Confidence            345667788999999999999999999999 8877754 999987

>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.98  E-value=4.9e-10  Score=57.09  Aligned_cols=42  Identities=21%  Similarity=0.367  Sum_probs=36.4

Q ss_pred             CCCCCCCccccCccchhccChHHHHHHHHHHhCCCCceeCCCC
Q psy16578         42 DKPAGEDVFACPKCSKTYLRQYTLNAHLRYECGKRPKFKCPHC   84 (177)
Q Consensus        42 ~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C   84 (177)
                      ....++++|.|.+|++.|....+|..|++.|.+.++ |.|..|
T Consensus         5 ~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~-~~C~~C   46 (46)
T 2en8_A            5 SSGSGEKSHTCDECGKNFCYISALRIHQRVHMGEKC-SGPSSG   46 (46)
T ss_dssp             CCCCCCSSEECTTTCCEESSHHHHHHHHTTTCCSCS-SCCSCC
T ss_pred             ccCCCCCCeECCCcCcccCCHHHHHHHHHHhCCCCC-CCCCCC
Confidence            345677889999999999999999999999988755 999987

>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.98  E-value=4.8e-10  Score=57.14  Aligned_cols=39  Identities=15%  Similarity=0.284  Sum_probs=34.2

Q ss_pred             ccCCCCceecCCccccccChhHHHHHHHHhhCCCCCccCC
Q psy16578        117 NSQLNGSFICPKCSNRYVYKHNLKQHLKFECGVEPQFKCP  156 (177)
Q Consensus       117 ~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~  156 (177)
                      .+.++++|.|..|++.|.....|..|+++|++ +++|.|.
T Consensus         6 ~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~-~~~~~C~   44 (46)
T 2en3_A            6 SGTGEKPFQCKECGMNFSWSCSLFKHLRSHER-TDPSGPS   44 (46)
T ss_dssp             CSCCCCSEECSSSCCEESSSHHHHHHHHHHHH-SCCSSCS
T ss_pred             ccCCCCCeeCcccChhhCCHHHHHHHHHHhCC-CCCCCCC
Confidence            34568999999999999999999999999998 5569986

>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A

Probab=98.97  E-value=9.7e-11  Score=58.58  Aligned_cols=35  Identities=26%  Similarity=0.400  Sum_probs=30.9

Q ss_pred             HHHHhhCCCCCccCCCCcccccchhHHHHHHhhhcC
Q psy16578        142 HLKFECGVEPQFKCPYCDKRCKLKGNLMSHIALKHT  177 (177)
Q Consensus       142 H~~~h~~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~  177 (177)
                      |+++|++ +++|.|.+|++.|...++|.+|+++|++
T Consensus         1 H~~~H~~-~k~~~C~~C~k~f~~~~~L~~H~~~H~~   35 (42)
T 2el5_A            1 GSSGSSG-ENPYECSECGKAFNRKDQLISHQRTHAG   35 (42)
T ss_dssp             CCSSSSS-CCSEECSSSCCEESSHHHHHHHHGGGCC
T ss_pred             CCCCCCC-CCCccCCCcChhhCCHHHHHHHHHhcCC
Confidence            5677877 6669999999999999999999999875

>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.97  E-value=9.2e-10  Score=56.09  Aligned_cols=43  Identities=28%  Similarity=0.580  Sum_probs=36.4

Q ss_pred             CCCCCCCCccccCccchhccChHHHHHHHHHHhCCCCceeCCCC
Q psy16578         41 EDKPAGEDVFACPKCSKTYLRQYTLNAHLRYECGKRPKFKCPHC   84 (177)
Q Consensus        41 ~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C   84 (177)
                      .....++++|.|.+|++.|....+|..|++.|.+.++ |.|++|
T Consensus         4 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~-~~C~~~   46 (46)
T 2em2_A            4 GSSGSGEKPFKCKECGKAFRQNIHLASHLRIHTGEKP-SGPSSG   46 (46)
T ss_dssp             CCSCCCCCSEECSSSCCEESSHHHHHHHHHHHCCCCS-SCSSCC
T ss_pred             CCCCCCCCCEECCcCCchhCCHHHHHHHHHHhCCCCC-CCCCCC
Confidence            3445677889999999999999999999999987755 999875

>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.97  E-value=3.8e-10  Score=56.96  Aligned_cols=39  Identities=15%  Similarity=0.312  Sum_probs=34.0

Q ss_pred             ccCCCCceecCCccccccChhHHHHHHHHhhCCCCCccCC
Q psy16578        117 NSQLNGSFICPKCSNRYVYKHNLKQHLKFECGVEPQFKCP  156 (177)
Q Consensus       117 ~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~  156 (177)
                      .+.++++|.|..|++.|.....|..|+++|++ +++|.|.
T Consensus         6 ~H~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~-~~~~~C~   44 (44)
T 2eox_A            6 SGTDSKSYNCNECGKAFTRIFHLTRHQKIHTR-KSGPSSG   44 (44)
T ss_dssp             CCCCCCCEEETTTTEEESSSHHHHTTHHHHCC-CCCCSCC
T ss_pred             CCCCCCCeECcccCcccCCHHHHHHHHHHhCC-CCCCCCC
Confidence            44568899999999999999999999999988 5669884

>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.97  E-value=5.7e-10  Score=56.87  Aligned_cols=42  Identities=26%  Similarity=0.559  Sum_probs=36.3

Q ss_pred             CCCCCCCccccCccchhccChHHHHHHHHHHhCCCCceeCCCC
Q psy16578         42 DKPAGEDVFACPKCSKTYLRQYTLNAHLRYECGKRPKFKCPHC   84 (177)
Q Consensus        42 ~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C   84 (177)
                      ....++++|.|.+|++.|....+|..|++.|.+.++ |.|++|
T Consensus         5 ~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~-~~C~~C   46 (46)
T 2en1_A            5 SSGSGEKPFKCEECGKRFTQNSQLHSHQRVHTGEKP-SGPSSG   46 (46)
T ss_dssp             TCCCCCCSEEETTTTEEESSHHHHHHHGGGGSCCCC-SCCCCC
T ss_pred             cCCCCCCCeeCCCCCcccCCHHHHHHHHHHcCCCCC-CCCCCC
Confidence            345677889999999999999999999999987755 999987

>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.97  E-value=6.3e-10  Score=56.70  Aligned_cols=42  Identities=21%  Similarity=0.496  Sum_probs=35.6

Q ss_pred             CCCCCCCccccCccchhccChHHHHHHHHHHhCCCCceeCCCC
Q psy16578         42 DKPAGEDVFACPKCSKTYLRQYTLNAHLRYECGKRPKFKCPHC   84 (177)
Q Consensus        42 ~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C   84 (177)
                      ....++++|.|.+|++.|....+|..|++.|.+.++ |.|++|
T Consensus         5 ~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~-~~C~~~   46 (46)
T 2ep3_A            5 SSGTGEKPYRCAECGKAFTDRSNLFTHQKIHTGEKP-SGPSSG   46 (46)
T ss_dssp             SSSSCCCSEECSSSCCEESSHHHHHHHHTTTTTSCC-CCTTCC
T ss_pred             CCCCCCCCeECCCCCchhCCHHHHHHHHHHcCCCCC-CCCCCC
Confidence            345677889999999999999999999999987755 999875

>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.96  E-value=1.3e-10  Score=58.13  Aligned_cols=35  Identities=17%  Similarity=0.361  Sum_probs=30.7

Q ss_pred             HHHHhhCCCCCccCCCCcccccchhHHHHHHhhhcC
Q psy16578        142 HLKFECGVEPQFKCPYCDKRCKLKGNLMSHIALKHT  177 (177)
Q Consensus       142 H~~~h~~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~  177 (177)
                      |+++|.+ +++|.|.+|++.|...++|.+|+++|++
T Consensus         1 H~~~H~~-~k~~~C~~C~k~f~~~~~L~~H~~~H~~   35 (42)
T 2yte_A            1 GSSGSSG-EKPYSCAECKETFSDNNRLVQHQKMHTV   35 (42)
T ss_dssp             CCSSSCS-CCSCBCTTTCCBCSSHHHHHHHHHHTSC
T ss_pred             CCcCcCC-CCCeECCCCCCccCCHHHHHHHHHHhCC
Confidence            5667877 6669999999999999999999999864

>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.96  E-value=5.2e-10  Score=57.01  Aligned_cols=40  Identities=13%  Similarity=0.315  Sum_probs=34.7

Q ss_pred             ccCCCCceecCCccccccChhHHHHHHHHhhCCCCCccCCC
Q psy16578        117 NSQLNGSFICPKCSNRYVYKHNLKQHLKFECGVEPQFKCPY  157 (177)
Q Consensus       117 ~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~  157 (177)
                      .+.++++|.|..|++.|.....|..|+++|++ +++|.|+.
T Consensus         6 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~-~k~~~C~~   45 (46)
T 2eq3_A            6 SGTGEKPYECNQCGKAFSVRSSLTTHQAIHTG-KKPSGPSS   45 (46)
T ss_dssp             SSCCCCSSEETTTTEECSSHHHHHHHHTTSCC-CCCCCSCC
T ss_pred             CCCCCCCeECCCCChhhCCHHHHHHHHHHhCC-CCCCCCCC
Confidence            34567899999999999999999999999988 56699963

>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.95  E-value=3.7e-10  Score=56.37  Aligned_cols=37  Identities=19%  Similarity=0.374  Sum_probs=30.8

Q ss_pred             cCCCCceecCCccccccChhHHHHHHHHhhCCCCCccC
Q psy16578        118 SQLNGSFICPKCSNRYVYKHNLKQHLKFECGVEPQFKC  155 (177)
Q Consensus       118 ~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C  155 (177)
                      +.++++|.|..|++.|.....|..|+++|++ +++|.|
T Consensus         6 H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~-~~~~~C   42 (42)
T 2ytb_A            6 SGGEKPYRCDQCGKAFSQKGSLIVHIRVHTG-SGPSSG   42 (42)
T ss_dssp             CCSCCSBCCTTTTCCBSSHHHHHTTGGGTSC-CSCCCC
T ss_pred             cCCCCCeeCCCccchhCCHHHHHHHHHHhCC-CCCCCC
Confidence            4467889999999999999999999999888 555877

>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.93  E-value=1.6e-10  Score=58.44  Aligned_cols=40  Identities=15%  Similarity=0.331  Sum_probs=32.9

Q ss_pred             cccCCCCceecCCccccccChhHHHHHHHHhhCCCCCccCC
Q psy16578        116 RNSQLNGSFICPKCSNRYVYKHNLKQHLKFECGVEPQFKCP  156 (177)
Q Consensus       116 ~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~  156 (177)
                      ..+.++++|.|..|++.|.....|..|+++|++ +++|.|.
T Consensus         5 ~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~-~k~~~~g   44 (44)
T 2epv_A            5 SSGSGEKPYECNECGKAFIWKSLLIVHERTHAG-VSGPSSG   44 (44)
T ss_dssp             CCCCCCCSEECSSSCCEESSHHHHHHHHGGGSS-CSCCCCC
T ss_pred             cccCCCcCeECCCCCcccCchHHHHHHHhHhcC-CCCCCCC
Confidence            456678899999999999999999999999988 5558763

>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.92  E-value=1.7e-10  Score=57.67  Aligned_cols=35  Identities=23%  Similarity=0.430  Sum_probs=30.8

Q ss_pred             HHHHhhCCCCCccCCCCcccccchhHHHHHHhhhcC
Q psy16578        142 HLKFECGVEPQFKCPYCDKRCKLKGNLMSHIALKHT  177 (177)
Q Consensus       142 H~~~h~~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~  177 (177)
                      |+++|.+ +++|.|.+|++.|...++|.+|+++|++
T Consensus         2 H~~~H~~-~k~~~C~~C~k~f~~~~~L~~H~~~H~~   36 (42)
T 2eos_A            2 SSGSSGG-EKPYPCEICGTRFRHLQTLKSHLRIHTG   36 (42)
T ss_dssp             CCSCCSS-SCCBCCSSSCCCBSSHHHHHHHTTTTSC
T ss_pred             CCcccCC-CCCEECCCCCCccCCHHHHHHHHHhcCC
Confidence            5677877 6669999999999999999999999874

>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.92  E-value=1.2e-10  Score=58.14  Aligned_cols=35  Identities=29%  Similarity=0.542  Sum_probs=31.2

Q ss_pred             HHHHhhCCCCCccCCCCcccccchhHHHHHHhhhcC
Q psy16578        142 HLKFECGVEPQFKCPYCDKRCKLKGNLMSHIALKHT  177 (177)
Q Consensus       142 H~~~h~~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~  177 (177)
                      |+++|++ +++|.|++|++.|...++|.+|+++|++
T Consensus         2 H~~~H~~-~k~~~C~~C~k~f~~~~~L~~H~~~H~~   36 (42)
T 2ytb_A            2 SSGSSGG-EKPYRCDQCGKAFSQKGSLIVHIRVHTG   36 (42)
T ss_dssp             CCCCCCS-CCSBCCTTTTCCBSSHHHHHTTGGGTSC
T ss_pred             CccccCC-CCCeeCCCccchhCCHHHHHHHHHHhCC
Confidence            6778888 6669999999999999999999999875

>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.92  E-value=1.5e-09  Score=54.68  Aligned_cols=35  Identities=23%  Similarity=0.310  Sum_probs=31.3

Q ss_pred             HHHHhhCCCCCccCCCCcccccchhHHHHHHhhhcC
Q psy16578        142 HLKFECGVEPQFKCPYCDKRCKLKGNLMSHIALKHT  177 (177)
Q Consensus       142 H~~~h~~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~  177 (177)
                      |+++|++ +++|.|.+|++.|...++|.+|+++|++
T Consensus         3 H~~~H~~-~k~~~C~~C~k~F~~~~~L~~H~~~H~~   37 (44)
T 2epv_A            3 SGSSGSG-EKPYECNECGKAFIWKSLLIVHERTHAG   37 (44)
T ss_dssp             CCCCCCC-CCSEECSSSCCEESSHHHHHHHHGGGSS
T ss_pred             CCcccCC-CcCeECCCCCcccCchHHHHHHHhHhcC
Confidence            6778888 6669999999999999999999999874

>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.91  E-value=1.5e-10  Score=58.50  Aligned_cols=35  Identities=26%  Similarity=0.343  Sum_probs=31.2

Q ss_pred             HHHHhhCCCCCccCCCCcccccchhHHHHHHhhhcC
Q psy16578        142 HLKFECGVEPQFKCPYCDKRCKLKGNLMSHIALKHT  177 (177)
Q Consensus       142 H~~~h~~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~  177 (177)
                      |+++|++ +++|.|++|++.|...++|.+|+++|++
T Consensus         3 H~~~H~~-~k~~~C~~C~k~f~~~~~L~~H~~~H~~   37 (44)
T 2eoj_A            3 SGSSGTG-ENPYECCECGKVFSRKDQLVSHQKTHSG   37 (44)
T ss_dssp             SCCSSSS-CCSCEETTTTEECSSHHHHHHHHTTSSS
T ss_pred             CccccCC-CcCeeCCCCCCccCCHHHHHHHHHHcCC
Confidence            6778888 6669999999999999999999999864

>1x3c_A Zinc finger protein 292; DNA binding, nuclear protein, C2H2-type zinc finger, KIAA0530, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.91  E-value=3.3e-09  Score=57.98  Aligned_cols=42  Identities=12%  Similarity=0.170  Sum_probs=35.2

Q ss_pred             ccccCCCCceecCC--ccccccChhHHHHHH-HHhhCCCCCccCCC
Q psy16578        115 RRNSQLNGSFICPK--CSNRYVYKHNLKQHL-KFECGVEPQFKCPY  157 (177)
Q Consensus       115 ~~~~~~~~~~~C~~--C~~~f~~~~~l~~H~-~~h~~~~~~~~C~~  157 (177)
                      .....+++||.|..  |+++|...+.|..|+ ++|++ ++||.|..
T Consensus        19 ~~~~sGEKPYkC~~~~CgKaFsr~s~L~~H~rriHTg-EKP~~~~~   63 (73)
T 1x3c_A           19 PTRYSPYRPYRCVHQGCFAAFTIQQNLILHYQAVHKS-DLPAFSAE   63 (73)
T ss_dssp             SSSSCSSCSCBCCSTTCCCBCSSHHHHHHHHHHHSSS-CCCCCCCS
T ss_pred             cccccCCCCeECCCCCcChhHcCHHHHHHHhhhhCCC-CCCccccc
Confidence            34556889999975  999999999999998 68988 66698865

>2d9k_A FLN29 gene product; zinc finger, ZF-TRAF, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.90  E-value=5.1e-10  Score=63.41  Aligned_cols=56  Identities=20%  Similarity=0.286  Sum_probs=48.2

Q ss_pred             cCCCCceecCCccccccChhHHHHHHHHhhCCCCCccCCCCcccccchhHHHHHHhhhcC
Q psy16578        118 SQLNGSFICPKCSNRYVYKHNLKQHLKFECGVEPQFKCPYCDKRCKLKGNLMSHIALKHT  177 (177)
Q Consensus       118 ~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~  177 (177)
                      +-+.+++.|.+|++.| ....|..|+ .|.+ +++|.|+.|++.|. ...|..|++++.+
T Consensus        12 ~c~~r~~~C~~C~~~~-~~~~L~~H~-~~c~-~~~~~C~~C~~~~~-~~~l~~H~~~c~~   67 (75)
T 2d9k_A           12 ECPLRLAVCQHCDLEL-SILKLKEHE-DYCG-ARTELCGNCGRNVL-VKDLKTHPEVCGR   67 (75)
T ss_dssp             CCCCCCEECSSSCCEE-CHHHHHHHH-HHHH-HCEEECSSSCCEEE-TTGGGTHHHHBTT
T ss_pred             cCCCcccCCcccChHh-hHHHHHHHH-hHcC-CCceEcccCCCcCc-HHHHHHHHHHccC
Confidence            3457899999999999 489999999 8888 66699999999887 5899999988753

>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eoi_A

Probab=98.89  E-value=2.6e-09  Score=54.38  Aligned_cols=41  Identities=27%  Similarity=0.553  Sum_probs=34.0

Q ss_pred             CCCCCCCccccCccchhccChHHHHHHHHHHhCCCCceeCCC
Q psy16578         42 DKPAGEDVFACPKCSKTYLRQYTLNAHLRYECGKRPKFKCPH   83 (177)
Q Consensus        42 ~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~   83 (177)
                      ....++++|.|.+|++.|....+|..|++.|.+.++ |.|++
T Consensus         5 ~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~-~~C~~   45 (46)
T 2emj_A            5 SSGTGEKPFECAECGKSFSISSQLATHQRIHTGEKP-SGPSS   45 (46)
T ss_dssp             CCCCCCCSEECSSSSCEESSHHHHHHHHHHHTTSCS-SSSCC
T ss_pred             CCCCCCCCEECCCCCcccCCHHHHHHHHHHhCCCCC-CCCCC
Confidence            345677889999999999999999999999887754 98874

>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.89  E-value=2.9e-09  Score=54.19  Aligned_cols=42  Identities=24%  Similarity=0.442  Sum_probs=35.6

Q ss_pred             CCCCCCCCccccCccchhccChHHHHHHHHHHhCCCCceeCCC
Q psy16578         41 EDKPAGEDVFACPKCSKTYLRQYTLNAHLRYECGKRPKFKCPH   83 (177)
Q Consensus        41 ~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~   83 (177)
                      .....++++|.|.+|++.|....+|..|++.|.+.++ |.|.+
T Consensus         4 ~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~-~~C~~   45 (46)
T 2eom_A            4 GSSGHGERGHRCSDCGKFFLQASNFIQHRRIHTGEKP-SGPSS   45 (46)
T ss_dssp             CCCCCCCSSCCCSSSCCCCSSHHHHHHHHHHHSSCCC-SSCCC
T ss_pred             CCCCCCCCCcCCCCCCCeeCChHHHHHHHHHhCCCCC-CCCCC
Confidence            3445677889999999999999999999999988755 99864

>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.89  E-value=2.4e-09  Score=54.45  Aligned_cols=42  Identities=21%  Similarity=0.472  Sum_probs=34.6

Q ss_pred             CCCCCCCCccccCccchhccChHHHHHHHHHHhCCCCceeCCC
Q psy16578         41 EDKPAGEDVFACPKCSKTYLRQYTLNAHLRYECGKRPKFKCPH   83 (177)
Q Consensus        41 ~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~   83 (177)
                      .....++++|.|.+|++.|....+|..|++.|.+.++ |.|++
T Consensus         4 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~-~~C~~   45 (46)
T 2em4_A            4 GSSGTGQRPYECIECGKAFKTKSSLICHRRSHTGEKP-SGPSS   45 (46)
T ss_dssp             CCCCCCSSSEECSSSCCEESSHHHHHHHHHHHSSSSC-CCCCC
T ss_pred             ccccCCCcCcCCCCCCCccCCHHHHHHHHHhcCCCCC-CCCCC
Confidence            3455677889999999999999999999999887755 99874

>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.89  E-value=1.5e-09  Score=54.99  Aligned_cols=42  Identities=21%  Similarity=0.452  Sum_probs=35.6

Q ss_pred             CCCCCCCCccccCccchhccChHHHHHHHHHHhCCCCceeCCC
Q psy16578         41 EDKPAGEDVFACPKCSKTYLRQYTLNAHLRYECGKRPKFKCPH   83 (177)
Q Consensus        41 ~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~   83 (177)
                      .....++++|.|.+|++.|....+|..|++.|.+.++ |.|++
T Consensus         4 ~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~-~~C~~   45 (45)
T 2epu_A            4 GSSGTGQKPFECTHCGKSFRAKGNLVTHQRIHTGEKS-GPSSG   45 (45)
T ss_dssp             CCCCCSCCSEEETTTTEEESSHHHHHHHHTTTSSCCC-CCSCC
T ss_pred             CCCCCCCcCccCCCCCCccCChHHHHHHHHHhCCCCC-CCCCC
Confidence            3456677889999999999999999999999988755 99874

>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.88  E-value=3.1e-09  Score=54.05  Aligned_cols=41  Identities=29%  Similarity=0.622  Sum_probs=34.9

Q ss_pred             CCCCCCCccccCccchhccChHHHHHHHHHHhCCCCceeCCC
Q psy16578         42 DKPAGEDVFACPKCSKTYLRQYTLNAHLRYECGKRPKFKCPH   83 (177)
Q Consensus        42 ~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~   83 (177)
                      ....++++|.|.+|++.|....+|..|++.|.+.++ |.|++
T Consensus         5 ~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~-~~C~~   45 (46)
T 2en9_A            5 SSGAGKKLFKCNECKKTFTQSSSLTVHQRIHTGEKP-SGPSS   45 (46)
T ss_dssp             SSCCSSCCCBCTTTCCBCSSHHHHHHHHHHHTSSCC-CSCCC
T ss_pred             CCCCCCCCEECCccCcccCCHHHHHHHHHHcCCCCC-CCCCC
Confidence            445677889999999999999999999999988755 99874

>1njq_A Superman protein; zinc-finger, peptide-zinc complex, beta-BETA-ALFA motif, metal binding protein; NMR {Synthetic} SCOP: g.37.1.3 PDB: 2l1o_A

Probab=98.88  E-value=2e-09  Score=52.77  Aligned_cols=35  Identities=14%  Similarity=0.268  Sum_probs=30.8

Q ss_pred             CCCceecCCccccccChhHHHHHHHHhhCCCCCccC
Q psy16578        120 LNGSFICPKCSNRYVYKHNLKQHLKFECGVEPQFKC  155 (177)
Q Consensus       120 ~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C  155 (177)
                      ++++|.|..|++.|...+.|..|+++|++ +++|.+
T Consensus         3 ~~k~~~C~~C~k~f~~~~~L~~H~~~H~~-~k~~~~   37 (39)
T 1njq_A            3 PPRSYTCSFCKREFRSAQALGGHMNVHRR-DRARLR   37 (39)
T ss_dssp             CSSSEECTTTCCEESSHHHHHHHHHTTCC-SCTTTT
T ss_pred             CCCceECCCCCcccCCHHHHHHHHHHcCC-Ccccee
Confidence            57899999999999999999999999988 555765

>2yrm_A B-cell lymphoma 6 protein; ZF-C2H2, zinc binding, DNA binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.87  E-value=3.2e-09  Score=53.22  Aligned_cols=40  Identities=15%  Similarity=0.326  Sum_probs=34.4

Q ss_pred             CCCCCCccccCccchhccChHHHHHHHHHHhCCCCceeCCC
Q psy16578         43 KPAGEDVFACPKCSKTYLRQYTLNAHLRYECGKRPKFKCPH   83 (177)
Q Consensus        43 ~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~   83 (177)
                      ...++++|.|.+|++.|....+|..|++.|.+.++ |.|.+
T Consensus         4 ~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~-~~C~~   43 (43)
T 2yrm_A            4 GSSGNGAFFCNECDCRFSEEASLKRHTLQTHSDKS-GPSSG   43 (43)
T ss_dssp             CCSSSCCBCCSSSCCCBSSHHHHHHHHHHHTCTTC-SSSCC
T ss_pred             CcCCCCCEECCCCCCeeCChHHHHHHHHhhCCCCC-ccCCC
Confidence            34567889999999999999999999999988755 99874

>2eln_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.87  E-value=1.1e-09  Score=53.36  Aligned_cols=30  Identities=27%  Similarity=0.398  Sum_probs=18.8

Q ss_pred             CCCCceecCC--ccccccChhHHHHHHHHhhC
Q psy16578        119 QLNGSFICPK--CSNRYVYKHNLKQHLKFECG  148 (177)
Q Consensus       119 ~~~~~~~C~~--C~~~f~~~~~l~~H~~~h~~  148 (177)
                      .+++||.|.+  |++.|..++.|..|+++|++
T Consensus         5 ~gekp~~C~~~~C~k~F~~~~~L~~H~r~Htg   36 (38)
T 2eln_A            5 SSGILLKCPTDGCDYSTPDKYKLQAHLKVHTA   36 (38)
T ss_dssp             SCCCCEECSSSSCCCEESCHHHHHHHHHHHSC
T ss_pred             CCCCCCCCCCCCCCCccCCHHHHHHHHHhcCC
Confidence            3456666654  66666666666666666655

>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.87  E-value=3.3e-09  Score=53.91  Aligned_cols=41  Identities=24%  Similarity=0.525  Sum_probs=34.0

Q ss_pred             CCCCCCCccccCccchhccChHHHHHHHHHHhCCCCceeCCC
Q psy16578         42 DKPAGEDVFACPKCSKTYLRQYTLNAHLRYECGKRPKFKCPH   83 (177)
Q Consensus        42 ~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~   83 (177)
                      ....++++|.|.+|++.|....+|..|++.|.+.++ |.|++
T Consensus         5 ~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~~~-~~C~~   45 (46)
T 2em3_A            5 SSGTGEKPYECKVCSKAFTQKAHLAQHQKTHTGEKP-SGPSS   45 (46)
T ss_dssp             CCCSSCCSEECSSSCCEESSHHHHHHHHHHHCCCCC-CCSCC
T ss_pred             CCCCCCcCeECCCCCcccCCHHHHHHHHHHhCCCCC-CCCCC
Confidence            345667889999999999999999999999887755 98874

>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.87  E-value=1.8e-09  Score=54.97  Aligned_cols=42  Identities=24%  Similarity=0.436  Sum_probs=35.3

Q ss_pred             CCCCCCCCccccCccchhccChHHHHHHHHHHhCCCCceeCCC
Q psy16578         41 EDKPAGEDVFACPKCSKTYLRQYTLNAHLRYECGKRPKFKCPH   83 (177)
Q Consensus        41 ~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~   83 (177)
                      .....++++|.|.+|++.|....+|..|++.|.+.++ |.|++
T Consensus         4 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~-~~C~~   45 (46)
T 2eon_A            4 GSSGTGEKPYKCQVCGKAFRVSSHLVQHHSVHSGERP-SGPSS   45 (46)
T ss_dssp             SSSCSSCCSCBCSSSCCBCSSHHHHHHHTTTTTSCCS-CTTSC
T ss_pred             CCCCCCCcccCCCCCCcccCcHHHHHHHHHhcCCCCC-CCCCC
Confidence            3456677889999999999999999999999887755 99874

>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.87  E-value=2.3e-09  Score=54.55  Aligned_cols=41  Identities=29%  Similarity=0.587  Sum_probs=34.1

Q ss_pred             CCCCCCCccccCccchhccChHHHHHHHHHHhCCCCceeCCC
Q psy16578         42 DKPAGEDVFACPKCSKTYLRQYTLNAHLRYECGKRPKFKCPH   83 (177)
Q Consensus        42 ~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~   83 (177)
                      ....++++|.|.+|++.|....+|..|++.|.+.++ |.|++
T Consensus         5 ~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~-~~C~~   45 (46)
T 2ytp_A            5 SSGTGERHYECSECGKAFARKSTLIMHQRIHTGEKP-SGPSS   45 (46)
T ss_dssp             CSSCCCCCEECSSSCCEESSHHHHHHHHTTTSCCCC-CSSCC
T ss_pred             cCcCCCCCeECCcCCcccCCHHHHHHHHHHhCCCCC-CCCCC
Confidence            345677889999999999999999999999887755 98874

>2elo_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.86  E-value=4.2e-10  Score=54.51  Aligned_cols=30  Identities=23%  Similarity=0.514  Sum_probs=17.8

Q ss_pred             CCCCceecCCccccccChhHHHHHHHHhhC
Q psy16578        119 QLNGSFICPKCSNRYVYKHNLKQHLKFECG  148 (177)
Q Consensus       119 ~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~  148 (177)
                      .++++|.|..|++.|.....|..|+++|++
T Consensus         5 ~~~k~~~C~~C~k~f~~~~~l~~H~~~h~~   34 (37)
T 2elo_A            5 SSGRSYSCPVCEKSFSEDRLIKSHIKTNHP   34 (37)
T ss_dssp             CCCCCCEETTTTEECSSHHHHHHHHHHHCS
T ss_pred             CCCCCcCCCCCCCccCCHHHHHHHHHHHcC
Confidence            445556666666666666666666666555

>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.86  E-value=2.9e-09  Score=54.14  Aligned_cols=41  Identities=27%  Similarity=0.562  Sum_probs=34.4

Q ss_pred             CCCCCCCccccCccchhccChHHHHHHHHHHhCCCCceeCCC
Q psy16578         42 DKPAGEDVFACPKCSKTYLRQYTLNAHLRYECGKRPKFKCPH   83 (177)
Q Consensus        42 ~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~   83 (177)
                      ....++++|.|.+|++.|....+|..|++.|.+.++ |.|++
T Consensus         5 ~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~-~~C~~   45 (46)
T 2emg_A            5 SSGTGENPFICSECGKVFTHKTNLIIHQKIHTGERP-SGPSS   45 (46)
T ss_dssp             CCCCSCCSCBCTTTCCBCSSHHHHHHHHTTTSCCCC-SCSCC
T ss_pred             CCCCCCCCEECCccCcccCCHHHHHHHHHHhCCCCC-CCCCC
Confidence            345677889999999999999999999999887755 99874

>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.86  E-value=3.4e-09  Score=53.86  Aligned_cols=41  Identities=24%  Similarity=0.594  Sum_probs=34.4

Q ss_pred             CCCCCCCccccCccchhccChHHHHHHHHHHhCCCCceeCCC
Q psy16578         42 DKPAGEDVFACPKCSKTYLRQYTLNAHLRYECGKRPKFKCPH   83 (177)
Q Consensus        42 ~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~   83 (177)
                      ....++++|.|.+|++.|....+|..|++.|.+.++ |.|++
T Consensus         5 ~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~kp-~~C~~   45 (46)
T 2eor_A            5 SSGTGEKPYNCEECGKAFIHDSQLQEHQRIHTGEKP-SGPSS   45 (46)
T ss_dssp             SSSSCCCSEECTTTCCEESSHHHHHHHHHHHHSCCC-SSSTT
T ss_pred             cCcCCCcCccCCCCCCCcCCHHHHHHHHHhcCCCCC-CCCCC
Confidence            345667889999999999999999999999988755 99874

>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.86  E-value=3.3e-09  Score=53.95  Aligned_cols=41  Identities=22%  Similarity=0.476  Sum_probs=34.3

Q ss_pred             CCCCCCCccccCccchhccChHHHHHHHHHHhCCCCceeCCC
Q psy16578         42 DKPAGEDVFACPKCSKTYLRQYTLNAHLRYECGKRPKFKCPH   83 (177)
Q Consensus        42 ~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~   83 (177)
                      ....++++|.|.+|++.|....+|..|++.|.+.++ |.|++
T Consensus         5 ~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~-~~C~~   45 (46)
T 2enf_A            5 SSGTGEKPYKCNECGKVFTQNSHLVRHRGIHTGEKP-SGPSS   45 (46)
T ss_dssp             CCCCCCCSCBCSSSCCBCSSHHHHHHHHTTTTTSSC-CCCSC
T ss_pred             cCCCCCcCeECCCCCcccCCHHHHHHHHHhhCCCCC-CCCCC
Confidence            345667889999999999999999999999887755 99875

>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.85  E-value=3.3e-09  Score=53.93  Aligned_cols=41  Identities=27%  Similarity=0.530  Sum_probs=34.1

Q ss_pred             CCCCCCCccccCccchhccChHHHHHHHHHHhCCCCceeCCC
Q psy16578         42 DKPAGEDVFACPKCSKTYLRQYTLNAHLRYECGKRPKFKCPH   83 (177)
Q Consensus        42 ~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~   83 (177)
                      ....++++|.|.+|++.|....+|..|++.|.+.++ |.|+.
T Consensus         5 ~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~-~~C~~   45 (46)
T 2eoh_A            5 SSGSGKKPYECKECRKTFIQIGHLNQHKRVHTGERS-SGPSS   45 (46)
T ss_dssp             CSCCCSCSCCCSSSCCCCSSHHHHHHHHHHCSSCCS-CSTTC
T ss_pred             CCcCCCCCcCCCCcCchhCCHHHHHHHHHHhCCCCC-CCCCC
Confidence            345677889999999999999999999999887754 98874

>2ent_A Krueppel-like factor 15; zinc binding, transcription factor, adipogenesis, CLCNKA, chloride channel Ka, rhodopsin, IRBP; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.85  E-value=2.6e-09  Score=54.84  Aligned_cols=43  Identities=28%  Similarity=0.455  Sum_probs=37.1

Q ss_pred             CCCCCCCCccccC--ccchhccChHHHHHHHHHHhCCCCceeCCCC
Q psy16578         41 EDKPAGEDVFACP--KCSKTYLRQYTLNAHLRYECGKRPKFKCPHC   84 (177)
Q Consensus        41 ~~~~~~~~~~~C~--~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C   84 (177)
                      .....++++|.|.  .|++.|.....|..|++.|.+.++ |.|.+|
T Consensus         4 ~~~H~~~k~~~C~~~~C~k~f~~~~~L~~H~~~H~~~k~-~~C~~C   48 (48)
T 2ent_A            4 GSSGTGEKPFACTWPGCGWRFSRSDELSRHRRSHSGVKP-SGPSSG   48 (48)
T ss_dssp             CCSSCCCCCEECCSSSCCCEESSHHHHHHHHTTSCCCCS-CSSCCC
T ss_pred             CCCcCCCCCeECCCCCCCCccCCHHHHHHHHHHhCCCCC-CCCCCC
Confidence            3455678889998  899999999999999999988755 999987

>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.84  E-value=4.2e-09  Score=53.49  Aligned_cols=40  Identities=23%  Similarity=0.502  Sum_probs=33.3

Q ss_pred             CCCCCCccccCccchhccChHHHHHHHHHHhCCCCceeCCC
Q psy16578         43 KPAGEDVFACPKCSKTYLRQYTLNAHLRYECGKRPKFKCPH   83 (177)
Q Consensus        43 ~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~   83 (177)
                      ...++++|.|.+|++.|....+|..|++.|.+.++ |.|++
T Consensus         6 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~-~~C~~   45 (46)
T 2eow_A            6 SGTGEKPYKCNECGKAFRARSSLAIHQATHSGEKP-SGPSS   45 (46)
T ss_dssp             CSCCCCCEECTTSCCEESSHHHHHHHHHHHCCCSC-SCTTC
T ss_pred             CCCCCCCeeccccCChhcCHHHHHHHHHHcCCCCC-CCCCC
Confidence            45667889999999999999999999999887755 98874

>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.84  E-value=3.7e-09  Score=53.75  Aligned_cols=41  Identities=27%  Similarity=0.610  Sum_probs=33.3

Q ss_pred             CCCCCCCccccCccchhccChHHHHHHHHHHhCCCCceeCCC
Q psy16578         42 DKPAGEDVFACPKCSKTYLRQYTLNAHLRYECGKRPKFKCPH   83 (177)
Q Consensus        42 ~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~   83 (177)
                      ....++++|.|.+|++.|.....|..|++.|.+.++ |.|+.
T Consensus         5 ~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~k~-~~C~~   45 (46)
T 2emi_A            5 SSGTGERHYECSECGKAFIQKSTLSMHQRIHRGEKP-SGPSS   45 (46)
T ss_dssp             CSCSSCCCEECSSSCCEESSHHHHHHHHGGGCSCCC-CSCCC
T ss_pred             cccCCCCCCCCCCCCcccCCHHHHHHHHhHhCCCCC-CCCCC
Confidence            345667789999999999999999999998887754 88864

>2eln_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.84  E-value=3.4e-09  Score=51.57  Aligned_cols=31  Identities=26%  Similarity=0.443  Sum_probs=27.2

Q ss_pred             hhCCCCCccCCC--CcccccchhHHHHHHhhhcC
Q psy16578        146 ECGVEPQFKCPY--CDKRCKLKGNLMSHIALKHT  177 (177)
Q Consensus       146 h~~~~~~~~C~~--C~~~f~~~~~l~~H~~~~h~  177 (177)
                      +++ ++||.|++  |++.|..+++|.+|+++|++
T Consensus         4 ~~g-ekp~~C~~~~C~k~F~~~~~L~~H~r~Htg   36 (38)
T 2eln_A            4 GSS-GILLKCPTDGCDYSTPDKYKLQAHLKVHTA   36 (38)
T ss_dssp             SSC-CCCEECSSSSCCCEESCHHHHHHHHHHHSC
T ss_pred             CCC-CCCCCCCCCCCCCccCCHHHHHHHHHhcCC
Confidence            345 67799987  99999999999999999975

>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.84  E-value=3.8e-09  Score=53.70  Aligned_cols=41  Identities=24%  Similarity=0.528  Sum_probs=34.3

Q ss_pred             CCCCCCCccccCccchhccChHHHHHHHHHHhCCCCceeCCC
Q psy16578         42 DKPAGEDVFACPKCSKTYLRQYTLNAHLRYECGKRPKFKCPH   83 (177)
Q Consensus        42 ~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~   83 (177)
                      ....++++|.|.+|++.|....+|..|++.|.+.++ |.|++
T Consensus         5 ~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~-~~C~~   45 (46)
T 2em6_A            5 SSGMGEKCYKCDVCGKEFSQSSHLQTHQRVHTGEKP-SGPSS   45 (46)
T ss_dssp             SCCCCCCCCBCSSSCCBCSSHHHHHHHHTTTSSSCC-CCTTC
T ss_pred             cccCCCCCeECCCCCcccCCHHHHHHHHHHcCCCCC-CCCCC
Confidence            345677889999999999999999999999887755 99874

>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.84  E-value=4.6e-09  Score=53.34  Aligned_cols=41  Identities=24%  Similarity=0.613  Sum_probs=34.2

Q ss_pred             CCCCCCCccccCccchhccChHHHHHHHHHHhCCCCceeCCC
Q psy16578         42 DKPAGEDVFACPKCSKTYLRQYTLNAHLRYECGKRPKFKCPH   83 (177)
Q Consensus        42 ~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~   83 (177)
                      ....++++|.|.+|++.|....+|..|++.|.+.++ |.|++
T Consensus         5 ~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~-~~C~~   45 (46)
T 2ep1_A            5 SSGTGEKPYECSDCGKSFIKKSQLHVHQRIHTGENP-SGPSS   45 (46)
T ss_dssp             CCCSSCCSSCCSSSCCCCSSHHHHHHHHGGGSSSCC-CSSSC
T ss_pred             cCCCCCCCcCCCCCCchhCCHHHHHHHHHHhCCCCC-CCCCC
Confidence            345667889999999999999999999999887755 99874

>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=98.84  E-value=1.4e-09  Score=51.88  Aligned_cols=29  Identities=21%  Similarity=0.584  Sum_probs=17.1

Q ss_pred             CCCceecCCccccccChhHHHHHHHHhhC
Q psy16578        120 LNGSFICPKCSNRYVYKHNLKQHLKFECG  148 (177)
Q Consensus       120 ~~~~~~C~~C~~~f~~~~~l~~H~~~h~~  148 (177)
                      ++++|.|..|++.|.....|..|+++|++
T Consensus         4 ~~k~~~C~~C~k~f~~~~~L~~H~~~h~~   32 (35)
T 2elx_A            4 GSSGYVCALCLKKFVSSIRLRSHIREVHG   32 (35)
T ss_dssp             CCCSEECSSSCCEESSHHHHHHHHHHTSC
T ss_pred             CCCCeECCCCcchhCCHHHHHHHHHHHcC
Confidence            44556666666666666666666665555

>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.84  E-value=3.1e-09  Score=54.06  Aligned_cols=42  Identities=24%  Similarity=0.518  Sum_probs=34.9

Q ss_pred             CCCCCCCCccccCccchhccChHHHHHHHHHHhCCCCceeCCC
Q psy16578         41 EDKPAGEDVFACPKCSKTYLRQYTLNAHLRYECGKRPKFKCPH   83 (177)
Q Consensus        41 ~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~   83 (177)
                      .....++++|.|.+|++.|....+|..|++.|.+.++ |.|+.
T Consensus         4 ~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~-~~C~~   45 (46)
T 2enh_A            4 GSSGTGEKPYECDVCRKAFSHHASLTQHQRVHSGEKP-SGPSS   45 (46)
T ss_dssp             CCCCCCSSSCBCTTTCCBCSSSHHHHHHGGGSCCSCC-CCCCC
T ss_pred             CCCcCCCCCcCCCCcCchhCCHHHHHHHHHHhCCCCC-CCCCC
Confidence            3456677889999999999999999999999887755 99864

>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.83  E-value=3.8e-09  Score=53.70  Aligned_cols=41  Identities=22%  Similarity=0.491  Sum_probs=34.1

Q ss_pred             CCCCCCCccccCccchhccChHHHHHHHHHHhCCCCceeCCC
Q psy16578         42 DKPAGEDVFACPKCSKTYLRQYTLNAHLRYECGKRPKFKCPH   83 (177)
Q Consensus        42 ~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~   83 (177)
                      ....++++|.|.+|++.|....+|..|++.|.+.++ |.|++
T Consensus         5 ~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~-~~C~~   45 (46)
T 2yti_A            5 SSGTGEKPYKCNECGKVFTQNSHLARHRGIHTGEKP-SGPSS   45 (46)
T ss_dssp             CCCSCCCTTCCSSSCCCCSSHHHHHHHHTTTSCSCC-SSTTC
T ss_pred             cCCCCCcCeECCCCCcccCChhHHHHHhHhcCCCCC-CCCCC
Confidence            345667889999999999999999999999887755 98874

>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription; NMR {Mus musculus} SCOP: g.37.1.1

Probab=98.82  E-value=1.7e-09  Score=51.63  Aligned_cols=29  Identities=28%  Similarity=0.534  Sum_probs=16.9

Q ss_pred             CCCceecCCccccccChhHHHHHHHHhhC
Q psy16578        120 LNGSFICPKCSNRYVYKHNLKQHLKFECG  148 (177)
Q Consensus       120 ~~~~~~C~~C~~~f~~~~~l~~H~~~h~~  148 (177)
                      ++++|.|..|++.|.....|..|+++|++
T Consensus         4 ~~k~~~C~~C~k~f~~~~~l~~H~~~H~~   32 (35)
T 1srk_A            4 GKRPFVCRICLSAFTTKANCARHLKVHTD   32 (35)
T ss_dssp             CCSCEECSSSCCEESSHHHHHHHHGGGTS
T ss_pred             CCcCeeCCCCCcccCCHHHHHHHHHHcCC
Confidence            44556666666666666666666555554

>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.82  E-value=3.5e-09  Score=53.81  Aligned_cols=40  Identities=28%  Similarity=0.545  Sum_probs=32.9

Q ss_pred             CCCCCCccccCccchhccChHHHHHHHHHHhCCCCceeCCC
Q psy16578         43 KPAGEDVFACPKCSKTYLRQYTLNAHLRYECGKRPKFKCPH   83 (177)
Q Consensus        43 ~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~   83 (177)
                      ...++++|.|.+|++.|....+|..|++.|.+.++ |.|++
T Consensus         6 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~-~~C~~   45 (46)
T 2ytf_A            6 SGTGEKPFECSECQKAFNTKSNLIVHQRTHTGEKP-SGPSS   45 (46)
T ss_dssp             SSCCCCSEECSSSCCEESSHHHHHHHHHTSCSSSS-SCCCC
T ss_pred             CCCCCCCcCCCCCCcccCCHHHHHHHHHHhCCCCC-CCCCC
Confidence            45667789999999999999999999988887754 88874

>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1

Probab=98.82  E-value=4.1e-09  Score=49.62  Aligned_cols=32  Identities=22%  Similarity=0.544  Sum_probs=26.7

Q ss_pred             CceecCCccccccChhHHHHHHHHhhCCCCCcc
Q psy16578        122 GSFICPKCSNRYVYKHNLKQHLKFECGVEPQFK  154 (177)
Q Consensus       122 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~  154 (177)
                      +||.|..|++.|...+.|..|+++|++ +++|.
T Consensus         1 kp~~C~~C~k~F~~~~~L~~H~~~H~~-~~~~~   32 (33)
T 1rim_A            1 YKFACPECPKRFMRSDHLSKHITLHEL-LGEER   32 (33)
T ss_dssp             CCCCCSSSCCCCSSHHHHHHHHHHHTT-TCCCC
T ss_pred             CcccCCCCCchhCCHHHHHHHHHHhCC-CCCCC
Confidence            478999999999999999999999988 44464

>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.82  E-value=4.5e-09  Score=53.42  Aligned_cols=41  Identities=24%  Similarity=0.438  Sum_probs=33.3

Q ss_pred             CCCCCCCccccCccchhccChHHHHHHHHHHhCCCCceeCCC
Q psy16578         42 DKPAGEDVFACPKCSKTYLRQYTLNAHLRYECGKRPKFKCPH   83 (177)
Q Consensus        42 ~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~   83 (177)
                      ....++++|.|.+|++.|.....|..|++.|.+.++ |.|+.
T Consensus         5 ~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~-~~C~~   45 (46)
T 2eoz_A            5 SSGTGEKPYSCNVCGKAFVLSAHLNQHLRVHTQETL-SGPSS   45 (46)
T ss_dssp             CCCSSCCSEEETTTTEEESSHHHHHHHHHHHSSCCS-SSCCC
T ss_pred             ccCCCCCCeECcccChhhCCHHHHHHHHHHhCCCCC-CCCCC
Confidence            345667889999999999999999999998887754 88864

>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.82  E-value=4.5e-09  Score=53.42  Aligned_cols=41  Identities=22%  Similarity=0.501  Sum_probs=34.0

Q ss_pred             CCCCCCCccccCccchhccChHHHHHHHHHHhCCCCceeCCC
Q psy16578         42 DKPAGEDVFACPKCSKTYLRQYTLNAHLRYECGKRPKFKCPH   83 (177)
Q Consensus        42 ~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~   83 (177)
                      ....++++|.|.+|++.|....+|..|++.|.+.++ |.|++
T Consensus         5 ~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~-~~C~~   45 (46)
T 2eq2_A            5 SSGTGGKPYQCNECGKAFSQTSKLARHQRVHTGEKP-SGPSS   45 (46)
T ss_dssp             CSSSSSCSSSCCSSCCCCSSHHHHHHHGGGGCCCCC-CCCCC
T ss_pred             cccCCCCCeECCCCCcccCCHHHHHHHHHHcCCCCC-CCCCC
Confidence            345667889999999999999999999999887754 99874

>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.82  E-value=4.5e-09  Score=53.42  Aligned_cols=41  Identities=22%  Similarity=0.495  Sum_probs=34.0

Q ss_pred             CCCCCCCccccCccchhccChHHHHHHHHHHhCCCCceeCCC
Q psy16578         42 DKPAGEDVFACPKCSKTYLRQYTLNAHLRYECGKRPKFKCPH   83 (177)
Q Consensus        42 ~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~   83 (177)
                      ....++++|.|.+|++.|....+|..|++.|.+.++ |.|+.
T Consensus         5 ~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~-~~C~~   45 (46)
T 2eq1_A            5 SSGTGEKPYKCNECGKAFRAHSNLTTHQVIHTGEKP-SGPSS   45 (46)
T ss_dssp             CCCCCSCCCCCTTTTCCCSSHHHHHHHHTTTCCSCC-SSCCC
T ss_pred             cccCCCCCeECCcCChhhCCHHHHHHHHHHhCCCCC-CCCCC
Confidence            345677889999999999999999999999887754 98874

>2eou_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.82  E-value=6.6e-09  Score=52.27  Aligned_cols=40  Identities=18%  Similarity=0.289  Sum_probs=33.3

Q ss_pred             CCCCCCCccccCccchhccChHHHHHHHHHHhCCCCceeCC
Q psy16578         42 DKPAGEDVFACPKCSKTYLRQYTLNAHLRYECGKRPKFKCP   82 (177)
Q Consensus        42 ~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~   82 (177)
                      ....++++|.|.+|++.|....+|..|++.|.+.++ |.|.
T Consensus         5 ~~h~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~-~~C~   44 (44)
T 2eou_A            5 SSGAAKTTSECQECGKIFRHSSLLIEHQALHAGESG-PSSG   44 (44)
T ss_dssp             CSCSSSCCCCCTTTCCCCSSHHHHHHHHHHHTTSCC-CCCC
T ss_pred             CCCCCCcCeECCCCCcccCCHHHHHHHHHHHCCCCC-CCCC
Confidence            345567889999999999999999999999987755 8884

>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.81  E-value=4.1e-09  Score=53.56  Aligned_cols=41  Identities=27%  Similarity=0.619  Sum_probs=33.6

Q ss_pred             CCCCCCCccccCccchhccChHHHHHHHHHHhCCCCceeCCC
Q psy16578         42 DKPAGEDVFACPKCSKTYLRQYTLNAHLRYECGKRPKFKCPH   83 (177)
Q Consensus        42 ~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~   83 (177)
                      ....++++|.|.+|++.|....+|..|++.|.+.++ |.|++
T Consensus         5 ~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~p-~~C~~   45 (46)
T 2yts_A            5 SSGTGEKPYICNECGKSFIQKSHLNRHRRIHTGEKP-SGPSS   45 (46)
T ss_dssp             CCCCSCCSEECSSSCCEESSHHHHHHHGGGTSSCCS-SCCCC
T ss_pred             CCCCCCcCEECCCCChhhCChHHHHHHHHhcCCCCC-cCCCC
Confidence            345667889999999999999999999998887754 98874

>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.81  E-value=5.9e-09  Score=52.99  Aligned_cols=40  Identities=28%  Similarity=0.598  Sum_probs=33.7

Q ss_pred             CCCCCCccccCccchhccChHHHHHHHHHHhCCCCceeCCC
Q psy16578         43 KPAGEDVFACPKCSKTYLRQYTLNAHLRYECGKRPKFKCPH   83 (177)
Q Consensus        43 ~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~   83 (177)
                      ...++++|.|.+|++.|....+|..|++.|.+.++ |.|++
T Consensus         6 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~-~~C~~   45 (46)
T 2yth_A            6 SGSGEKPFQCEECGKRFTQNSHLHSHQRVHTGEKP-SGPSS   45 (46)
T ss_dssp             CCCCSSSBCCSSSCCCBSSHHHHHHHGGGGTTCCC-SSCCC
T ss_pred             CCCCCcCCCCCCCCcccCCHHHHHHHHHhcCCCCC-CCCCC
Confidence            45667889999999999999999999999887755 99874

>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.81  E-value=4.7e-09  Score=53.31  Aligned_cols=41  Identities=24%  Similarity=0.561  Sum_probs=33.4

Q ss_pred             CCCCCCCccccCccchhccChHHHHHHHHHHhCCCCceeCCC
Q psy16578         42 DKPAGEDVFACPKCSKTYLRQYTLNAHLRYECGKRPKFKCPH   83 (177)
Q Consensus        42 ~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~   83 (177)
                      ....++++|.|.+|++.|....+|..|++.|.+.++ |.|++
T Consensus         5 ~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~-~~C~~   45 (46)
T 2yrj_A            5 SSGTGEKPYRCGECGKAFAQKANLTQHQRIHTGEKP-SGPSS   45 (46)
T ss_dssp             CCCCCCCCEECSSSCCEESSHHHHHHHHTTTSSCCS-SCSCC
T ss_pred             cCCCCCCCeECCCCCCccCCHHHHHHHHHHcCCCCC-CCCCC
Confidence            345667889999999999999999999998887754 88864

>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.81  E-value=5.5e-09  Score=53.08  Aligned_cols=41  Identities=27%  Similarity=0.498  Sum_probs=34.6

Q ss_pred             CCCCCCCccccCccchhccChHHHHHHHHHHhCCCCceeCCC
Q psy16578         42 DKPAGEDVFACPKCSKTYLRQYTLNAHLRYECGKRPKFKCPH   83 (177)
Q Consensus        42 ~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~   83 (177)
                      ....++++|.|.+|++.|....+|..|++.|.+.++ |.|+.
T Consensus         5 ~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~-~~C~~   45 (46)
T 2emz_A            5 SSGSGERPFKCNECGKGFGRRSHLAGHLRLHSREKS-SGPSS   45 (46)
T ss_dssp             SCSSCCCSCCCSSSCCCCSSHHHHHHHHHHHHHTTC-CCSCC
T ss_pred             cCCCCCCCeECCCCCcccCCHHHHHHHHHHhCCCCC-CCCCC
Confidence            345677889999999999999999999999988755 99864

>2eoy_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.81  E-value=3.8e-09  Score=53.71  Aligned_cols=41  Identities=24%  Similarity=0.338  Sum_probs=33.2

Q ss_pred             CCCCCCCccccCccchhccChHHHHHHHHHHhC-CCCceeCCC
Q psy16578         42 DKPAGEDVFACPKCSKTYLRQYTLNAHLRYECG-KRPKFKCPH   83 (177)
Q Consensus        42 ~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~-~~~~~~C~~   83 (177)
                      ....++++|.|.+|++.|....+|..|++.|.+ .+ ||.|++
T Consensus         5 ~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~-~~~C~~   46 (46)
T 2eoy_A            5 SSGQKEKCFKCNKCEKTFSCSKYLTQHERIHTRGVK-SGPSSG   46 (46)
T ss_dssp             CCCCCSCCEECSSSCCEESSSHHHHHHHTTCCSCCT-TSSSCC
T ss_pred             cccCCCCCEECcCCCCcCCCHHHHHHHHHHcCCCCC-CCCCCC
Confidence            345667889999999999999999999988887 54 488864

>2elm_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.80  E-value=8e-10  Score=53.58  Aligned_cols=27  Identities=22%  Similarity=0.351  Sum_probs=14.2

Q ss_pred             CCCccCCCCcccccchhHHHHH-Hhhhc
Q psy16578        150 EPQFKCPYCDKRCKLKGNLMSH-IALKH  176 (177)
Q Consensus       150 ~~~~~C~~C~~~f~~~~~l~~H-~~~~h  176 (177)
                      +++|.|.+|++.|...++|.+| +++|.
T Consensus         7 ~k~~~C~~C~k~f~~~~~L~~H~~~~H~   34 (37)
T 2elm_A            7 GHLYYCSQCHYSSITKNCLKRHVIQKHS   34 (37)
T ss_dssp             SCEEECSSSSCEEECHHHHHHHHHHHTC
T ss_pred             CcCeECCCCCcccCCHHHHHHHHHHHcc
Confidence            3345555555555555555555 44443

>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.79  E-value=6.1e-09  Score=52.93  Aligned_cols=40  Identities=25%  Similarity=0.507  Sum_probs=32.6

Q ss_pred             CCCCCCccccCccchhccChHHHHHHHHHHhCCCCceeCCC
Q psy16578         43 KPAGEDVFACPKCSKTYLRQYTLNAHLRYECGKRPKFKCPH   83 (177)
Q Consensus        43 ~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~   83 (177)
                      ...++++|.|.+|++.|.....|..|++.|.+.++ |.|+.
T Consensus         6 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~-~~C~~   45 (46)
T 2yto_A            6 SGTGEKPYKCSDCGKAFTRKSGLHIHQQSHTGERH-SGPSS   45 (46)
T ss_dssp             CCCSCCCEECSSSCCEESSHHHHHHHHHHHTCCCB-TTTBC
T ss_pred             ccCCCCCEECcccCCccCCHhHHHHHHHHcCCCCC-CCCCC
Confidence            45667789999999999999999999998887754 88863

>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger; NMR {Homo sapiens} SCOP: g.41.3.1

Probab=98.79  E-value=1.4e-09  Score=59.15  Aligned_cols=50  Identities=20%  Similarity=0.495  Sum_probs=40.8

Q ss_pred             CCCCCCCCccccCccchhccChHHHHHHHHHHhCCCCceeCCCCccccccchHH
Q psy16578         41 EDKPAGEDVFACPKCSKTYLRQYTLNAHLRYECGKRPKFKCPHCNKKCHQKCNL   94 (177)
Q Consensus        41 ~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C~~~f~~~~~l   94 (177)
                      ...+.++++|.|..|++.|.....|.   +.|.+. +||.|.+|++.|....++
T Consensus         6 ~~~H~~~k~~~C~~C~k~F~~~~~l~---~~H~~~-k~~~C~~C~k~f~~~~~~   55 (62)
T 1vd4_A            6 ERDSTNRASFKCPVCSSTFTDLEANQ---LFDPMT-GTFRCTFCHTEVEEDESA   55 (62)
T ss_dssp             SSSCCSSSEEECSSSCCEEEHHHHHH---HEETTT-TEEBCSSSCCBCEECTTC
T ss_pred             HHHcCCCCCccCCCCCchhccHHHhH---hhcCCC-CCEECCCCCCccccCccc
Confidence            34567788999999999999988876   667766 459999999999887654

>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.79  E-value=7.3e-09  Score=52.03  Aligned_cols=39  Identities=23%  Similarity=0.447  Sum_probs=31.1

Q ss_pred             CCCCCCccccCccchhccChHHHHHHHHHHhCCCCceeCC
Q psy16578         43 KPAGEDVFACPKCSKTYLRQYTLNAHLRYECGKRPKFKCP   82 (177)
Q Consensus        43 ~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~   82 (177)
                      ...++++|.|.+|++.|....+|..|++.|.+.++ |.|+
T Consensus         6 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~-~~C~   44 (44)
T 2eof_A            6 SGTGEKPYECNECQKAFNTKSNLMVHQRTHTGESG-PSSG   44 (44)
T ss_dssp             CCSCCCSEECTTTCCEESCHHHHHHHHHHTTTSSC-SCCC
T ss_pred             CCCCCCCeECCCCCcccCCHhHHHHHHHHhCCCCC-CCCC
Confidence            45667788888899888888888888888877654 8874

>1x6f_A Zinc finger protein 462; zinc finger domain, KIAA1803, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.78  E-value=3.5e-10  Score=66.08  Aligned_cols=54  Identities=19%  Similarity=0.338  Sum_probs=43.0

Q ss_pred             ccCCCCceecCCccccccChhHHHHHHHHhhCCCCCccCCCCcccccchhHHHHHHhhh
Q psy16578        117 NSQLNGSFICPKCSNRYVYKHNLKQHLKFECGVEPQFKCPYCDKRCKLKGNLMSHIALK  175 (177)
Q Consensus       117 ~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C~~~f~~~~~l~~H~~~~  175 (177)
                      .+.++++|.|..|++.|.....|..|+++|++ +++|.|..|..    ..+|..|.+.|
T Consensus        19 ~H~~~kpy~C~~C~k~F~~~~~L~~H~~~Ht~-ekp~~C~~~~~----~~~~~~~~~~~   72 (88)
T 1x6f_A           19 PRLQNSTYQCKHCDSKLQSTAELTSHLNIHNE-EFQKRAKRQER----RKQLLSKQKYA   72 (88)
T ss_dssp             SCCCCSCEECSSSCCEESSHHHHHHHHHHHHH-HHHHHCCCCSC----CCCCCCCCCCC
T ss_pred             ccCCCCCCcCCCCCCEeCCHHHHHHHHHHhCC-CCCcccchhhh----HHHHHhhhccc
Confidence            45578999999999999999999999999998 56699987664    33455555544

>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.77  E-value=7.8e-09  Score=51.97  Aligned_cols=39  Identities=28%  Similarity=0.472  Sum_probs=29.9

Q ss_pred             CCCCCCccccCccchhccChHHHHHHHHHHhCCCCceeCC
Q psy16578         43 KPAGEDVFACPKCSKTYLRQYTLNAHLRYECGKRPKFKCP   82 (177)
Q Consensus        43 ~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~   82 (177)
                      ...++++|.|.+|++.|....+|..|++.|.+.++ |.|.
T Consensus         6 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~-~~C~   44 (44)
T 2yu5_A            6 SGAGENPFKCSKCDRVFTQRNYLVQHERTHARKSG-PSSG   44 (44)
T ss_dssp             CCSCCCSEECSSSSCEESSSHHHHHHHHHCCCCCS-SCCC
T ss_pred             ccCCCCCeECCCCCchhCCHHHHHHHhHhcCCCCC-CCCC
Confidence            45566778888888888888888888888776644 8774

>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.77  E-value=6.6e-09  Score=52.19  Aligned_cols=39  Identities=21%  Similarity=0.378  Sum_probs=31.6

Q ss_pred             CCCCCCccccCccchhccChHHHHHHHHHHhCCCCceeCC
Q psy16578         43 KPAGEDVFACPKCSKTYLRQYTLNAHLRYECGKRPKFKCP   82 (177)
Q Consensus        43 ~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~   82 (177)
                      ...++++|.|.+|++.|.....|..|++.|.+.++ |.|+
T Consensus         6 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~-~~C~   44 (44)
T 2en7_A            6 SGTGMKPYVCNECGKAFRSKSYLIIHTRTHTGESG-PSSG   44 (44)
T ss_dssp             CSSSSSSSCCTTTCCCCSSHHHHHHHHTTTCCSSS-SCCC
T ss_pred             CCCCCcCeECCCCCCccCCHHHHHHHhhhcCCCCC-CCCC
Confidence            45567789999999999999999999988877654 8874

>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yta_A

Probab=98.76  E-value=9.2e-09  Score=51.09  Aligned_cols=38  Identities=24%  Similarity=0.481  Sum_probs=29.9

Q ss_pred             CCCCCCccccCccchhccChHHHHHHHHHHhCCCCceeC
Q psy16578         43 KPAGEDVFACPKCSKTYLRQYTLNAHLRYECGKRPKFKC   81 (177)
Q Consensus        43 ~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C   81 (177)
                      ...++++|.|.+|++.|....+|..|++.|.+.++ |.|
T Consensus         5 ~H~~~~~~~C~~C~k~f~~~~~l~~H~~~H~~~k~-~~C   42 (42)
T 2epc_A            5 SSGGETPYLCGQCGKSFTQRGSLAVHQRSCSQSGP-SSG   42 (42)
T ss_dssp             CCCSSCCEECSSSCCEESSHHHHHHHHHHTTCCCC-CCC
T ss_pred             cCCCCCCeECCCCCcccCCHHHHHHHhhhcCCCCC-CCC
Confidence            34566778888888888888888888888877754 776

>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.75  E-value=5.5e-09  Score=51.68  Aligned_cols=38  Identities=26%  Similarity=0.601  Sum_probs=30.9

Q ss_pred             CCCCCCccccCccchhccChHHHHHHHHHHhCCCCceeC
Q psy16578         43 KPAGEDVFACPKCSKTYLRQYTLNAHLRYECGKRPKFKC   81 (177)
Q Consensus        43 ~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C   81 (177)
                      ...++++|.|.+|++.|....+|..|++.|.+.++ |.|
T Consensus         4 ~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~-~~C   41 (41)
T 2ept_A            4 GSSGQRVYECQECGKSFRQKGSLTLHERIHTGSGP-SSG   41 (41)
T ss_dssp             SCCCCCCEECSSSCCEESSHHHHHHHGGGCCCCSC-SCC
T ss_pred             ccCCCCCeECCCCCCCcCCHHHHHHHHHHhCCCCC-cCC
Confidence            34567789999999999999999999988887754 876

>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.75  E-value=8e-09  Score=51.34  Aligned_cols=38  Identities=24%  Similarity=0.540  Sum_probs=30.1

Q ss_pred             CCCCCCccccCccchhccChHHHHHHHHHHhCCCCceeC
Q psy16578         43 KPAGEDVFACPKCSKTYLRQYTLNAHLRYECGKRPKFKC   81 (177)
Q Consensus        43 ~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C   81 (177)
                      ...++++|.|.+|++.|.....|..|++.|.+.++ |.|
T Consensus         5 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~-~~C   42 (42)
T 2en2_A            5 SSGGEKPYKCETCGARFVQVAHLRAHVLIHTGSGP-SSG   42 (42)
T ss_dssp             CCCSSCSEECTTTCCEESSHHHHHHHTHHHHSCCS-SCC
T ss_pred             ccCCCCCEeCCCcChhhCCHHHHHHHHHHcCCCCC-CCC
Confidence            34567788888888888888888888888887754 776

>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.75  E-value=4e-09  Score=50.53  Aligned_cols=31  Identities=32%  Similarity=0.607  Sum_probs=18.9

Q ss_pred             cCCCCceecCCccccccChhHHHHHHHHhhC
Q psy16578        118 SQLNGSFICPKCSNRYVYKHNLKQHLKFECG  148 (177)
Q Consensus       118 ~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~  148 (177)
                      +.++++|.|..|++.|.....|..|+++|++
T Consensus         4 h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~   34 (36)
T 2elt_A            4 GSSGKPYKCPQCSYASAIKANLNVHLRKHTG   34 (36)
T ss_dssp             SCCCCSEECSSSSCEESSHHHHHHHHHHHTC
T ss_pred             CCCCCCCCCCCCCcccCCHHHHHHHHHHccC
Confidence            3445566666666666666666666666654

>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.74  E-value=8.3e-09  Score=52.37  Aligned_cols=40  Identities=25%  Similarity=0.537  Sum_probs=32.9

Q ss_pred             CCCCCCccccCccchhccChHHHHHHHHHHhCCCCceeCCC
Q psy16578         43 KPAGEDVFACPKCSKTYLRQYTLNAHLRYECGKRPKFKCPH   83 (177)
Q Consensus        43 ~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~   83 (177)
                      ...++++|.|.+|++.|....+|..|++.|.+.++ |.|+.
T Consensus         6 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~-~~C~~   45 (46)
T 2eq3_A            6 SGTGEKPYECNQCGKAFSVRSSLTTHQAIHTGKKP-SGPSS   45 (46)
T ss_dssp             SSCCCCSSEETTTTEECSSHHHHHHHHTTSCCCCC-CCSCC
T ss_pred             CCCCCCCeECCCCChhhCCHHHHHHHHHHhCCCCC-CCCCC
Confidence            45667789999999999999999999998887755 88864

>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.74  E-value=8.9e-09  Score=52.27  Aligned_cols=39  Identities=26%  Similarity=0.437  Sum_probs=31.5

Q ss_pred             CCCCCCccccCccchhccChHHHHHHHHHHhCCCCceeCC
Q psy16578         43 KPAGEDVFACPKCSKTYLRQYTLNAHLRYECGKRPKFKCP   82 (177)
Q Consensus        43 ~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~   82 (177)
                      ...++++|.|.+|++.|....+|..|++.|.+.++ |.|+
T Consensus         6 ~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~~~-~~C~   44 (46)
T 2en3_A            6 SGTGEKPFQCKECGMNFSWSCSLFKHLRSHERTDP-SGPS   44 (46)
T ss_dssp             CSCCCCSEECSSSCCEESSSHHHHHHHHHHHHSCC-SSCS
T ss_pred             ccCCCCCeeCcccChhhCCHHHHHHHHHHhCCCCC-CCCC
Confidence            45567788899999999988889999888887754 8885

>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=98.74  E-value=1.2e-08  Score=48.38  Aligned_cols=31  Identities=29%  Similarity=0.439  Sum_probs=27.7

Q ss_pred             hhCCCCCccCCCCcccccchhHHHHHHhhhcC
Q psy16578        146 ECGVEPQFKCPYCDKRCKLKGNLMSHIALKHT  177 (177)
Q Consensus       146 h~~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~  177 (177)
                      |.+ +++|.|.+|++.|...++|.+|+++|++
T Consensus         2 h~~-~k~~~C~~C~k~f~~~~~L~~H~~~h~~   32 (35)
T 2elx_A            2 SSG-SSGYVCALCLKKFVSSIRLRSHIREVHG   32 (35)
T ss_dssp             CCC-CCSEECSSSCCEESSHHHHHHHHHHTSC
T ss_pred             CCC-CCCeECCCCcchhCCHHHHHHHHHHHcC
Confidence            555 6679999999999999999999999875

>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=98.74  E-value=5e-09  Score=47.16  Aligned_cols=27  Identities=26%  Similarity=0.596  Sum_probs=19.0

Q ss_pred             CCccCCCCcccccchhHHHHHHhhhcC
Q psy16578        151 PQFKCPYCDKRCKLKGNLMSHIALKHT  177 (177)
Q Consensus       151 ~~~~C~~C~~~f~~~~~l~~H~~~~h~  177 (177)
                      ++|.|.+|++.|...++|..|+++|++
T Consensus         2 k~~~C~~C~k~f~~~~~l~~H~~~h~~   28 (28)
T 2kvf_A            2 RPYSCSVCGKRFSLKHQMETHYRVHTG   28 (28)
T ss_dssp             CSEECSSSCCEESCHHHHHHHHTTSCC
T ss_pred             cCccCCCCCcccCCHHHHHHHHHhcCC
Confidence            347777777777777777777777654

>2emb_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.73  E-value=9.4e-09  Score=51.65  Aligned_cols=40  Identities=18%  Similarity=0.275  Sum_probs=31.1

Q ss_pred             CCCCCCCccccCccchhccChHHHHHHHHHHhCCCCceeCC
Q psy16578         42 DKPAGEDVFACPKCSKTYLRQYTLNAHLRYECGKRPKFKCP   82 (177)
Q Consensus        42 ~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~   82 (177)
                      ....++++|.|.+|++.|....+|..|++.|.+.++ |.|+
T Consensus         5 ~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~-~~C~   44 (44)
T 2emb_A            5 SSGHTRKRYECSKCQATFNLRKHLIQHQKTHAAKSG-PSSG   44 (44)
T ss_dssp             SCCCCCSSEECTTTCCEESCHHHHHHHGGGGCCCCC-TTCC
T ss_pred             cccCCCCCeECCCCCCccCCHHHHHHHHHHcCCCCC-cCCC
Confidence            345566788888888888888888888888877654 8774

>2elp_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.73  E-value=3.1e-09  Score=51.32  Aligned_cols=30  Identities=20%  Similarity=0.485  Sum_probs=16.9

Q ss_pred             CCCCceecCCccccccCh-hHHHHHHHHhhC
Q psy16578        119 QLNGSFICPKCSNRYVYK-HNLKQHLKFECG  148 (177)
Q Consensus       119 ~~~~~~~C~~C~~~f~~~-~~l~~H~~~h~~  148 (177)
                      .++++|.|..|++.|... ..|..|+++|++
T Consensus         5 ~~~k~~~C~~C~k~f~~~~~~L~~H~~~H~~   35 (37)
T 2elp_A            5 SSGRAMKCPYCDFYFMKNGSDLQRHIWAHEG   35 (37)
T ss_dssp             CCCCCEECSSSSCEECSSCHHHHHHHHHHHT
T ss_pred             CCCCCeECCCCChhhccCHHHHHHHHHhcCC
Confidence            344555555555555555 555555555554

>2elv_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.73  E-value=3.5e-09  Score=50.83  Aligned_cols=29  Identities=10%  Similarity=0.286  Sum_probs=15.5

Q ss_pred             CCCceecCCccccccChhHHHHHHHHhhC
Q psy16578        120 LNGSFICPKCSNRYVYKHNLKQHLKFECG  148 (177)
Q Consensus       120 ~~~~~~C~~C~~~f~~~~~l~~H~~~h~~  148 (177)
                      ++++|.|..|++.|.....|..|+++|++
T Consensus         6 ~~k~~~C~~C~k~f~~~~~l~~H~~~H~~   34 (36)
T 2elv_A            6 SGLLYDCHICERKFKNELDRDRHMLVHGD   34 (36)
T ss_dssp             CCCCEECSSSCCEESSHHHHHHHHTTTST
T ss_pred             CCCCeECCCCCCccCCHHHHHHHHHHhcC
Confidence            44555555555555555555555555544

>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.73  E-value=4.8e-09  Score=50.33  Aligned_cols=30  Identities=27%  Similarity=0.401  Sum_probs=16.9

Q ss_pred             CCCCceecCCccccccChhHHHHHHHHhhC
Q psy16578        119 QLNGSFICPKCSNRYVYKHNLKQHLKFECG  148 (177)
Q Consensus       119 ~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~  148 (177)
                      .++++|.|..|++.|.....|..|+++|++
T Consensus         5 ~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~   34 (36)
T 2elq_A            5 SSGKPFKCSLCEYATRSKSNLKAHMNRHST   34 (36)
T ss_dssp             CCCCSEECSSSSCEESCHHHHHHHHHHSST
T ss_pred             CCCCCccCCCCCchhCCHHHHHHHHHHhcc
Confidence            345555555555555555555555555544

>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription; NMR {Mus musculus} SCOP: g.37.1.1

Probab=98.72  E-value=1.4e-08  Score=48.22  Aligned_cols=31  Identities=23%  Similarity=0.461  Sum_probs=27.6

Q ss_pred             hhCCCCCccCCCCcccccchhHHHHHHhhhcC
Q psy16578        146 ECGVEPQFKCPYCDKRCKLKGNLMSHIALKHT  177 (177)
Q Consensus       146 h~~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~  177 (177)
                      |.+ +++|.|.+|++.|...++|.+|+++|++
T Consensus         2 H~~-~k~~~C~~C~k~f~~~~~l~~H~~~H~~   32 (35)
T 1srk_A            2 SSG-KRPFVCRICLSAFTTKANCARHLKVHTD   32 (35)
T ss_dssp             CSC-CSCEECSSSCCEESSHHHHHHHHGGGTS
T ss_pred             CCC-CcCeeCCCCCcccCCHHHHHHHHHHcCC
Confidence            556 6669999999999999999999999875

>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.71  E-value=9.7e-09  Score=51.61  Aligned_cols=40  Identities=18%  Similarity=0.405  Sum_probs=31.2

Q ss_pred             CCCCCCCccccCccchhccChHHHHHHHHHHhCCCCceeCC
Q psy16578         42 DKPAGEDVFACPKCSKTYLRQYTLNAHLRYECGKRPKFKCP   82 (177)
Q Consensus        42 ~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~   82 (177)
                      ....++++|.|.+|++.|....+|..|++.|.+.++ |.|.
T Consensus         5 ~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~~~-~~C~   44 (44)
T 2eox_A            5 SSGTDSKSYNCNECGKAFTRIFHLTRHQKIHTRKSG-PSSG   44 (44)
T ss_dssp             CCCCCCCCEEETTTTEEESSSHHHHTTHHHHCCCCC-CSCC
T ss_pred             cCCCCCCCeECcccCcccCCHHHHHHHHHHhCCCCC-CCCC
Confidence            345567788888888888888888888888877654 8773

>2elo_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.71  E-value=1.3e-08  Score=48.99  Aligned_cols=33  Identities=24%  Similarity=0.483  Sum_probs=29.0

Q ss_pred             HHhhCCCCCccCCCCcccccchhHHHHHHhhhcC
Q psy16578        144 KFECGVEPQFKCPYCDKRCKLKGNLMSHIALKHT  177 (177)
Q Consensus       144 ~~h~~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~  177 (177)
                      ++|.+ +++|.|.+|++.|...++|.+|+++|++
T Consensus         2 ~~h~~-~k~~~C~~C~k~f~~~~~l~~H~~~h~~   34 (37)
T 2elo_A            2 SSGSS-GRSYSCPVCEKSFSEDRLIKSHIKTNHP   34 (37)
T ss_dssp             CCCCC-CCCCEETTTTEECSSHHHHHHHHHHHCS
T ss_pred             CCCCC-CCCcCCCCCCCccCCHHHHHHHHHHHcC
Confidence            45666 6669999999999999999999999875

>3iuf_A Zinc finger protein UBI-D4; structural genomics consortium (SGC), C2H2, APO metal-binding, nucleus, phosphoprotein, transcription, TRAN regulation; 1.80A {Homo sapiens}

Probab=98.70  E-value=6e-09  Score=53.55  Aligned_cols=34  Identities=21%  Similarity=0.426  Sum_probs=24.1

Q ss_pred             cCCCCceecCCccccccChhHHHHHHH-HhhCCCC
Q psy16578        118 SQLNGSFICPKCSNRYVYKHNLKQHLK-FECGVEP  151 (177)
Q Consensus       118 ~~~~~~~~C~~C~~~f~~~~~l~~H~~-~h~~~~~  151 (177)
                      +.++++|.|..|++.|.....|..|++ +|+++..
T Consensus         2 Ht~~kp~~C~~C~k~F~~~~~L~~H~~~~H~~e~~   36 (48)
T 3iuf_A            2 EDRDKPYACDICGKRYKNRPGLSYHYAHSHLAEEE   36 (48)
T ss_dssp             CTTTSCEECTTTCCEESSHHHHHHHHHHSSCC---
T ss_pred             CCCCcCEECCCcCcccCCHHHHHHHhhhhcCCCCC
Confidence            346778888888888888888888888 7776444

>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.70  E-value=8.6e-09  Score=49.33  Aligned_cols=30  Identities=20%  Similarity=0.465  Sum_probs=16.9

Q ss_pred             CCCCceecCCccccccChhHHHHHHHHhhC
Q psy16578        119 QLNGSFICPKCSNRYVYKHNLKQHLKFECG  148 (177)
Q Consensus       119 ~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~  148 (177)
                      .++++|.|..|++.|.....|..|+++|++
T Consensus         5 ~~~~~~~C~~C~k~f~~~~~l~~H~~~H~~   34 (36)
T 2elr_A            5 SSGKTHLCDMCGKKFKSKGTLKSHKLLHTA   34 (36)
T ss_dssp             CCCSSCBCTTTCCBCSSHHHHHHHHHHHSS
T ss_pred             CCCCCeecCcCCCCcCchHHHHHHHHHhcC
Confidence            344555555555555555555555555544

>1njq_A Superman protein; zinc-finger, peptide-zinc complex, beta-BETA-ALFA motif, metal binding protein; NMR {Synthetic} SCOP: g.37.1.3 PDB: 2l1o_A

Probab=98.70  E-value=7.8e-09  Score=50.55  Aligned_cols=31  Identities=13%  Similarity=0.474  Sum_probs=26.8

Q ss_pred             hhCCCCCccCCCCcccccchhHHHHHHhhhcC
Q psy16578        146 ECGVEPQFKCPYCDKRCKLKGNLMSHIALKHT  177 (177)
Q Consensus       146 h~~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~  177 (177)
                      |++ +++|.|.+|++.|...++|.+|+++|++
T Consensus         1 h~~-~k~~~C~~C~k~f~~~~~L~~H~~~H~~   31 (39)
T 1njq_A            1 XWP-PRSYTCSFCKREFRSAQALGGHMNVHRR   31 (39)
T ss_dssp             -CC-SSSEECTTTCCEESSHHHHHHHHHTTCC
T ss_pred             CCC-CCceECCCCCcccCCHHHHHHHHHHcCC
Confidence            345 5679999999999999999999999875

>2d9k_A FLN29 gene product; zinc finger, ZF-TRAF, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.68  E-value=2.3e-08  Score=56.45  Aligned_cols=62  Identities=21%  Similarity=0.387  Sum_probs=51.5

Q ss_pred             CCCCCCCCCCccccCccchhccChHHHHHHHHHHhCCCCceeCCCCccccccchHHHhHHHHhcCC
Q psy16578         39 SSEDKPAGEDVFACPKCSKTYLRQYTLNAHLRYECGKRPKFKCPHCNKKCHQKCNLKSHIALKHDQ  104 (177)
Q Consensus        39 ~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~  104 (177)
                      ......-+.+++.|..|+..|. ...|..|+ .+.+..+ |.|+.|++.|. ...|..|+..+.+.
T Consensus         7 ~H~~~~c~~r~~~C~~C~~~~~-~~~L~~H~-~~c~~~~-~~C~~C~~~~~-~~~l~~H~~~c~~~   68 (75)
T 2d9k_A            7 GHEETECPLRLAVCQHCDLELS-ILKLKEHE-DYCGART-ELCGNCGRNVL-VKDLKTHPEVCGRE   68 (75)
T ss_dssp             CCCCCCCCCCCEECSSSCCEEC-HHHHHHHH-HHHHHCE-EECSSSCCEEE-TTGGGTHHHHBTTB
T ss_pred             hhCcccCCCcccCCcccChHhh-HHHHHHHH-hHcCCCc-eEcccCCCcCc-HHHHHHHHHHccCC
Confidence            4445567788999999999995 88999999 8887755 99999999887 48899999776654

>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.68  E-value=2.3e-08  Score=47.79  Aligned_cols=32  Identities=25%  Similarity=0.484  Sum_probs=28.0

Q ss_pred             HhhCCCCCccCCCCcccccchhHHHHHHhhhcC
Q psy16578        145 FECGVEPQFKCPYCDKRCKLKGNLMSHIALKHT  177 (177)
Q Consensus       145 ~h~~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~  177 (177)
                      +|.+ +++|.|.+|++.|....+|.+|+++|++
T Consensus         3 ~h~~-~k~~~C~~C~k~f~~~~~l~~H~~~H~~   34 (36)
T 2elt_A            3 SGSS-GKPYKCPQCSYASAIKANLNVHLRKHTG   34 (36)
T ss_dssp             CSCC-CCSEECSSSSCEESSHHHHHHHHHHHTC
T ss_pred             CCCC-CCCCCCCCCCcccCCHHHHHHHHHHccC
Confidence            3556 6679999999999999999999999875

>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.68  E-value=9.7e-09  Score=49.19  Aligned_cols=30  Identities=27%  Similarity=0.667  Sum_probs=18.6

Q ss_pred             CCCCceecCCccccccChhHHHHHHHHhhC
Q psy16578        119 QLNGSFICPKCSNRYVYKHNLKQHLKFECG  148 (177)
Q Consensus       119 ~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~  148 (177)
                      ..+++|.|..|++.|.....|..|+++|++
T Consensus         5 ~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~   34 (36)
T 2els_A            5 SSGKIFTCEYCNKVFKFKHSLQAHLRIHTN   34 (36)
T ss_dssp             SCCCCEECTTTCCEESSHHHHHHHHHHHCC
T ss_pred             CCCCCEECCCCCceeCCHHHHHHHHHHhCC
Confidence            345566666666666666666666666654

>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=98.68  E-value=9.4e-09  Score=45.84  Aligned_cols=24  Identities=21%  Similarity=0.573  Sum_probs=15.3

Q ss_pred             CccCCCCcccccchhHHHHHHhhh
Q psy16578        152 QFKCPYCDKRCKLKGNLMSHIALK  175 (177)
Q Consensus       152 ~~~C~~C~~~f~~~~~l~~H~~~~  175 (177)
                      +|.|.+|++.|...+.|.+|+++|
T Consensus         3 ~~~C~~C~k~f~~~~~l~~H~~~H   26 (27)
T 2kvh_A            3 PFSCSLCPQRSRDFSAMTKHLRTH   26 (27)
T ss_dssp             CEECSSSSCEESSHHHHHHHHHHC
T ss_pred             CccCCCcChhhCCHHHHHHHHHHc
Confidence            466666666666666666666654

>2kvg_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=98.67  E-value=6.5e-09  Score=46.46  Aligned_cols=25  Identities=20%  Similarity=0.692  Sum_probs=16.8

Q ss_pred             CCccCCCCcccccchhHHHHHHhhh
Q psy16578        151 PQFKCPYCDKRCKLKGNLMSHIALK  175 (177)
Q Consensus       151 ~~~~C~~C~~~f~~~~~l~~H~~~~  175 (177)
                      ++|.|.+|++.|...++|.+|+++|
T Consensus         2 k~~~C~~C~k~f~~~~~l~~H~~~H   26 (27)
T 2kvg_A            2 APYRCPLCRAGCPSLASMQAHMRGH   26 (27)
T ss_dssp             CTEEETTTTEEESCHHHHHHHHTTC
T ss_pred             cCcCCCCCCcccCCHHHHHHHHHhc
Confidence            3467777777777777777776665

>2epp_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.67  E-value=2.4e-08  Score=54.71  Aligned_cols=40  Identities=20%  Similarity=0.329  Sum_probs=33.1

Q ss_pred             cCCCCceecCCccccccChhHHHHHHHHhhCCCCCccCCCCc
Q psy16578        118 SQLNGSFICPKCSNRYVYKHNLKQHLKFECGVEPQFKCPYCD  159 (177)
Q Consensus       118 ~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C~  159 (177)
                      ...++||.|..|++.|.....|..|+++|+++ . ..+.+++
T Consensus         8 ~~~ekpy~C~~CgK~F~~~s~L~~H~r~Htg~-~-~~~~~~~   47 (66)
T 2epp_A            8 LREAGILPCGLCGKVFTDANRLRQHEAQHGVT-S-LQLGYID   47 (66)
T ss_dssp             CCCCCCCCCTTTCCCCSCHHHHHHHHHHHTTT-S-CCCCSCC
T ss_pred             CCCccCcCCCCCCCccCCHHHHHhhhhhhCCC-c-ccccccc
Confidence            44689999999999999999999999999984 3 4555554

>1fv5_A First zinc finger of U-shaped; CCHC, protein interaction, transcription; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1y0j_B 2l6z_B

Probab=98.66  E-value=1.3e-08  Score=48.83  Aligned_cols=25  Identities=20%  Similarity=0.449  Sum_probs=21.0

Q ss_pred             CCCCceecCCccccccChhHHHHHH
Q psy16578        119 QLNGSFICPKCSNRYVYKHNLKQHL  143 (177)
Q Consensus       119 ~~~~~~~C~~C~~~f~~~~~l~~H~  143 (177)
                      .+++||.|..|+++|...+.|..|+
T Consensus         4 ~gekp~~C~~CgK~F~~~s~L~~H~   28 (36)
T 1fv5_A            4 LKPARFMCLPCGIAFSSPSTLEAHQ   28 (36)
T ss_dssp             SSCCCCEETTTTEECSCHHHHHHHH
T ss_pred             CCccCeECCCCCCccCCHhHccCcC
Confidence            4678888888888888888888887

>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1

Probab=98.66  E-value=1.5e-08  Score=47.64  Aligned_cols=26  Identities=38%  Similarity=0.733  Sum_probs=24.4

Q ss_pred             CccCCCCcccccchhHHHHHHhhhcC
Q psy16578        152 QFKCPYCDKRCKLKGNLMSHIALKHT  177 (177)
Q Consensus       152 ~~~C~~C~~~f~~~~~l~~H~~~~h~  177 (177)
                      +|.|.+|++.|...++|..|+++|++
T Consensus         2 p~~C~~C~k~F~~~~~L~~H~~~H~~   27 (33)
T 1rim_A            2 KFACPECPKRFMRSDHLSKHITLHEL   27 (33)
T ss_dssp             CCCCSSSCCCCSSHHHHHHHHHHHTT
T ss_pred             cccCCCCCchhCCHHHHHHHHHHhCC
Confidence            69999999999999999999999875

>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1

Probab=98.65  E-value=1.5e-08  Score=45.04  Aligned_cols=26  Identities=23%  Similarity=0.543  Sum_probs=19.9

Q ss_pred             CccCCCCcccccchhHHHHHHhhhcC
Q psy16578        152 QFKCPYCDKRCKLKGNLMSHIALKHT  177 (177)
Q Consensus       152 ~~~C~~C~~~f~~~~~l~~H~~~~h~  177 (177)
                      +|.|.+|++.|...+.|.+|+++|++
T Consensus         1 ~~~C~~C~k~f~~~~~l~~H~~~h~~   26 (27)
T 1znf_A            1 XYKCGLCERSFVEKSALSRHQRVHKN   26 (27)
T ss_dssp             -CBCSSSCCBCSSHHHHHHHGGGTCC
T ss_pred             CccCCCCCCcCCCHHHHHHHHHHcCC
Confidence            47788888888888888888887764

>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.65  E-value=2.8e-08  Score=47.52  Aligned_cols=32  Identities=28%  Similarity=0.511  Sum_probs=28.0

Q ss_pred             HhhCCCCCccCCCCcccccchhHHHHHHhhhcC
Q psy16578        145 FECGVEPQFKCPYCDKRCKLKGNLMSHIALKHT  177 (177)
Q Consensus       145 ~h~~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~  177 (177)
                      +|.+ +++|.|.+|++.|...++|.+|+++|++
T Consensus         3 ~h~~-~k~~~C~~C~k~f~~~~~l~~H~~~H~~   34 (36)
T 2elq_A            3 SGSS-GKPFKCSLCEYATRSKSNLKAHMNRHST   34 (36)
T ss_dssp             SSCC-CCSEECSSSSCEESCHHHHHHHHHHSST
T ss_pred             CCCC-CCCccCCCCCchhCCHHHHHHHHHHhcc
Confidence            3555 6679999999999999999999999874

>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=98.63  E-value=1.6e-08  Score=46.05  Aligned_cols=25  Identities=20%  Similarity=0.588  Sum_probs=13.2

Q ss_pred             CccCCCCcccccchhHHHHHHhhhc
Q psy16578        152 QFKCPYCDKRCKLKGNLMSHIALKH  176 (177)
Q Consensus       152 ~~~C~~C~~~f~~~~~l~~H~~~~h  176 (177)
                      +|.|.+|++.|....+|..|+++|+
T Consensus         3 ~~~C~~C~~~f~~~~~l~~H~~~h~   27 (30)
T 2m0d_A            3 PYQCDYCGRSFSDPTSKMRHLETHD   27 (30)
T ss_dssp             CEECTTTCCEESCHHHHHHHHHTTC
T ss_pred             CccCCCCCcccCCHHHHHHHHHHhc
Confidence            3555555555555555555555544

>2elv_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.63  E-value=2.6e-08  Score=47.62  Aligned_cols=32  Identities=13%  Similarity=0.297  Sum_probs=27.9

Q ss_pred             HhhCCCCCccCCCCcccccchhHHHHHHhhhcC
Q psy16578        145 FECGVEPQFKCPYCDKRCKLKGNLMSHIALKHT  177 (177)
Q Consensus       145 ~h~~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~  177 (177)
                      .|.+ +++|.|.+|++.|...++|.+|+++|++
T Consensus         3 ~h~~-~k~~~C~~C~k~f~~~~~l~~H~~~H~~   34 (36)
T 2elv_A            3 SGSS-GLLYDCHICERKFKNELDRDRHMLVHGD   34 (36)
T ss_dssp             CSCC-CCCEECSSSCCEESSHHHHHHHHTTTST
T ss_pred             CCCC-CCCeECCCCCCccCCHHHHHHHHHHhcC
Confidence            3555 6679999999999999999999999864

>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.63  E-value=3.6e-08  Score=47.10  Aligned_cols=31  Identities=29%  Similarity=0.648  Sum_probs=27.3

Q ss_pred             hhCCCCCccCCCCcccccchhHHHHHHhhhcC
Q psy16578        146 ECGVEPQFKCPYCDKRCKLKGNLMSHIALKHT  177 (177)
Q Consensus       146 h~~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~  177 (177)
                      |.+ +++|.|.+|++.|....+|.+|+++|++
T Consensus         4 ~~~-~k~~~C~~C~k~f~~~~~l~~H~~~H~~   34 (36)
T 2els_A            4 GSS-GKIFTCEYCNKVFKFKHSLQAHLRIHTN   34 (36)
T ss_dssp             TSC-CCCEECTTTCCEESSHHHHHHHHHHHCC
T ss_pred             CCC-CCCEECCCCCceeCCHHHHHHHHHHhCC
Confidence            444 6679999999999999999999999875

>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.62  E-value=4.1e-08  Score=46.87  Aligned_cols=31  Identities=32%  Similarity=0.508  Sum_probs=27.4

Q ss_pred             hhCCCCCccCCCCcccccchhHHHHHHhhhcC
Q psy16578        146 ECGVEPQFKCPYCDKRCKLKGNLMSHIALKHT  177 (177)
Q Consensus       146 h~~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~  177 (177)
                      |.+ +++|.|.+|++.|....+|.+|+++|++
T Consensus         4 h~~-~~~~~C~~C~k~f~~~~~l~~H~~~H~~   34 (36)
T 2elr_A            4 GSS-GKTHLCDMCGKKFKSKGTLKSHKLLHTA   34 (36)
T ss_dssp             CCC-CSSCBCTTTCCBCSSHHHHHHHHHHHSS
T ss_pred             CCC-CCCeecCcCCCCcCchHHHHHHHHHhcC
Confidence            455 6679999999999999999999999875

>2epp_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.62  E-value=2.2e-08  Score=54.90  Aligned_cols=29  Identities=21%  Similarity=0.233  Sum_probs=26.6

Q ss_pred             CCCCccCCCCcccccchhHHHHHHhhhcC
Q psy16578        149 VEPQFKCPYCDKRCKLKGNLMSHIALKHT  177 (177)
Q Consensus       149 ~~~~~~C~~C~~~f~~~~~l~~H~~~~h~  177 (177)
                      ++++|.|.+|++.|...++|.+|+++|++
T Consensus        10 ~ekpy~C~~CgK~F~~~s~L~~H~r~Htg   38 (66)
T 2epp_A           10 EAGILPCGLCGKVFTDANRLRQHEAQHGV   38 (66)
T ss_dssp             CCCCCCCTTTCCCCSCHHHHHHHHHHHTT
T ss_pred             CccCcCCCCCCCccCCHHHHHhhhhhhCC
Confidence            36779999999999999999999999975

>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A

Probab=98.62  E-value=3.7e-08  Score=47.36  Aligned_cols=32  Identities=25%  Similarity=0.380  Sum_probs=28.9

Q ss_pred             ccCCCCceecCCccccccChhHHHHHHHHhhC
Q psy16578        117 NSQLNGSFICPKCSNRYVYKHNLKQHLKFECG  148 (177)
Q Consensus       117 ~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~  148 (177)
                      .+.++++|.|..|++.|.....|..|+++|++
T Consensus         5 ~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~   36 (37)
T 1p7a_A            5 GSTGIKPFQCPDCDRSFSRSDHLALHRKRHML   36 (37)
T ss_dssp             TTCCSSSBCCTTTCCCBSSHHHHHHHHGGGTC
T ss_pred             cCCCCCCccCCCCCcccCcHHHHHHHHHHhcc
Confidence            34578999999999999999999999999976

>2elp_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.61  E-value=4.5e-08  Score=47.08  Aligned_cols=32  Identities=28%  Similarity=0.468  Sum_probs=28.1

Q ss_pred             HhhCCCCCccCCCCcccccch-hHHHHHHhhhcC
Q psy16578        145 FECGVEPQFKCPYCDKRCKLK-GNLMSHIALKHT  177 (177)
Q Consensus       145 ~h~~~~~~~~C~~C~~~f~~~-~~l~~H~~~~h~  177 (177)
                      +|.+ +++|.|.+|++.|... ++|.+|+++|++
T Consensus         3 ~h~~-~k~~~C~~C~k~f~~~~~~L~~H~~~H~~   35 (37)
T 2elp_A            3 SGSS-GRAMKCPYCDFYFMKNGSDLQRHIWAHEG   35 (37)
T ss_dssp             SCCC-CCCEECSSSSCEECSSCHHHHHHHHHHHT
T ss_pred             CCCC-CCCeECCCCChhhccCHHHHHHHHHhcCC
Confidence            4666 6679999999999999 999999999864

>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A

Probab=98.61  E-value=2e-08  Score=45.42  Aligned_cols=26  Identities=38%  Similarity=0.715  Sum_probs=16.9

Q ss_pred             CccCCCCcccccchhHHHHHHhhhcC
Q psy16578        152 QFKCPYCDKRCKLKGNLMSHIALKHT  177 (177)
Q Consensus       152 ~~~C~~C~~~f~~~~~l~~H~~~~h~  177 (177)
                      +|.|.+|++.|...+.|..|+++|++
T Consensus         2 ~~~C~~C~k~f~~~~~l~~H~~~H~~   27 (29)
T 1rik_A            2 KFACPECPKRFMRSDHLTLHILLHEN   27 (29)
T ss_dssp             CEECSSSSCEESCSHHHHHHHTGGGS
T ss_pred             CccCCCCCchhCCHHHHHHHHHHhcC
Confidence            46666666666666666666666653

>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A

Probab=98.60  E-value=2.8e-08  Score=44.89  Aligned_cols=26  Identities=19%  Similarity=0.428  Sum_probs=17.3

Q ss_pred             CccCCCCcccccchhHHHHHHhhhcC
Q psy16578        152 QFKCPYCDKRCKLKGNLMSHIALKHT  177 (177)
Q Consensus       152 ~~~C~~C~~~f~~~~~l~~H~~~~h~  177 (177)
                      +|.|.+|++.|...+.|..|+++|++
T Consensus         2 ~~~C~~C~~~f~~~~~l~~H~~~h~~   27 (29)
T 1ard_A            2 SFVCEVCTRAFARQEHLKRHYRSHTN   27 (29)
T ss_dssp             CCBCTTTCCBCSSHHHHHHHHHHHSC
T ss_pred             CeECCCCCcccCCHHHHHHHHHHhcC
Confidence            46677777777777777777666653

>1bhi_A CRE-BP1, ATF-2; CRE binding protein, transcriptional activation domain, Zn finger, DNA-binding regulatory protein; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.60  E-value=5.5e-08  Score=47.05  Aligned_cols=33  Identities=21%  Similarity=0.454  Sum_probs=26.9

Q ss_pred             CCCceecC--CccccccChhHHHHHHHHhhCCCCCc
Q psy16578        120 LNGSFICP--KCSNRYVYKHNLKQHLKFECGVEPQF  153 (177)
Q Consensus       120 ~~~~~~C~--~C~~~f~~~~~l~~H~~~h~~~~~~~  153 (177)
                      ++++|.|.  .|++.|...+.|..|+++|++ +++|
T Consensus         3 ~~k~~~C~~~~C~k~f~~~~~L~~H~~~H~~-~k~~   37 (38)
T 1bhi_A            3 DDKPFLCTAPGCGQRFTNEDHLAVHKHKHEM-TLKF   37 (38)
T ss_dssp             TCCCEECCCTTTCCEESSHHHHHHHHHHHHT-TTTT
T ss_pred             CCcceECCCCCCCcccCCHHHHHHHHHHhCC-CCCC
Confidence            56789998  599999999999999999888 4435

>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A

Probab=98.58  E-value=3.4e-08  Score=44.92  Aligned_cols=26  Identities=38%  Similarity=0.825  Sum_probs=18.5

Q ss_pred             CccCCCCcccccchhHHHHHHhhhcC
Q psy16578        152 QFKCPYCDKRCKLKGNLMSHIALKHT  177 (177)
Q Consensus       152 ~~~C~~C~~~f~~~~~l~~H~~~~h~  177 (177)
                      +|.|.+|++.|...++|..|+++|++
T Consensus         2 ~~~C~~C~k~f~~~~~l~~H~~~h~~   27 (30)
T 1klr_A            2 TYQCQYCEFRSADSSNLKTHIKTKHS   27 (30)
T ss_dssp             CCCCSSSSCCCSCSHHHHHHHHHHTS
T ss_pred             CccCCCCCCccCCHHHHHHHHHHHcc
Confidence            47777777777777777777777654

>1ncs_A Peptide M30F, transcriptional factor SWI5; DNA binding motif, transcription regulation, zinc-finger; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=98.56  E-value=2.5e-09  Score=54.74  Aligned_cols=32  Identities=31%  Similarity=0.410  Sum_probs=16.2

Q ss_pred             HHhhCCCCCccCC--CCcccccchhHHHHHHhhhc
Q psy16578        144 KFECGVEPQFKCP--YCDKRCKLKGNLMSHIALKH  176 (177)
Q Consensus       144 ~~h~~~~~~~~C~--~C~~~f~~~~~l~~H~~~~h  176 (177)
                      ..|++ +++|.|.  .|++.|...++|.+|+++|+
T Consensus        11 ~~H~~-~k~~~C~~~~C~k~F~~~~~L~~H~~~H~   44 (47)
T 1ncs_A           11 VKEMP-DKTFECLFPGCTKTFKRRYNIRSHIQTHL   44 (47)
T ss_dssp             CEEET-TTEEECCCTTCCCEECSSSSHHHHHHHHT
T ss_pred             hccCC-CCCeECCCCCCCCccCCHHHHHHHHHHcc
Confidence            33444 3335553  45555555555555555554

>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=98.56  E-value=3.4e-08  Score=44.51  Aligned_cols=26  Identities=38%  Similarity=0.830  Sum_probs=17.8

Q ss_pred             CccCCCCcccccchhHHHHHHhhhcC
Q psy16578        152 QFKCPYCDKRCKLKGNLMSHIALKHT  177 (177)
Q Consensus       152 ~~~C~~C~~~f~~~~~l~~H~~~~h~  177 (177)
                      +|.|.+|++.|....+|..|+++|++
T Consensus         2 ~~~C~~C~~~f~~~~~l~~H~~~h~~   27 (29)
T 2m0e_A            2 EHKCPHCDKKFNQVGNLKAHLKIHIA   27 (29)
T ss_dssp             CCCCSSCCCCCCTTTHHHHHHHHHHS
T ss_pred             CCcCCCCCcccCCHHHHHHHHHHhcc
Confidence            46777777777777777777766653

>1x3c_A Zinc finger protein 292; DNA binding, nuclear protein, C2H2-type zinc finger, KIAA0530, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.55  E-value=9.3e-08  Score=52.28  Aligned_cols=44  Identities=14%  Similarity=0.161  Sum_probs=35.2

Q ss_pred             CCCCCCCCCccccCc--cchhccChHHHHHHH-HHHhCCCCceeCCCC
Q psy16578         40 SEDKPAGEDVFACPK--CSKTYLRQYTLNAHL-RYECGKRPKFKCPHC   84 (177)
Q Consensus        40 ~~~~~~~~~~~~C~~--C~~~f~~~~~l~~H~-~~h~~~~~~~~C~~C   84 (177)
                      ......+++||.|.+  |++.|....+|..|+ ++|.+.++ |.|.+=
T Consensus        18 ~~~~~sGEKPYkC~~~~CgKaFsr~s~L~~H~rriHTgEKP-~~~~~~   64 (73)
T 1x3c_A           18 FPTRYSPYRPYRCVHQGCFAAFTIQQNLILHYQAVHKSDLP-AFSAEV   64 (73)
T ss_dssp             CSSSSCSSCSCBCCSTTCCCBCSSHHHHHHHHHHHSSSCCC-CCCCSC
T ss_pred             ccccccCCCCeECCCCCcChhHcCHHHHHHHhhhhCCCCCC-cccccc
Confidence            444567889999976  999999999999998 56777755 888763

>1zfd_A SWI5; DNA binding motif, zinc finger DNA binding domain; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=98.55  E-value=6e-08  Score=44.94  Aligned_cols=25  Identities=24%  Similarity=0.494  Sum_probs=13.9

Q ss_pred             CccCC--CCcccccchhHHHHHHhhhc
Q psy16578        152 QFKCP--YCDKRCKLKGNLMSHIALKH  176 (177)
Q Consensus       152 ~~~C~--~C~~~f~~~~~l~~H~~~~h  176 (177)
                      +|.|.  .|++.|...++|.+|+++|+
T Consensus         3 ~~~C~~~~C~k~f~~~~~L~~H~~~H~   29 (32)
T 1zfd_A            3 PYSCDHPGCDKAFVRNHDLIRHKKSHQ   29 (32)
T ss_dssp             SBCCCCTTCCCCBSSSHHHHHHHGGGT
T ss_pred             CCcCcCCCCCCccCCHHHHHHHHHHcc
Confidence            35555  55555555555555555554

>1va1_A Transcription factor SP1; C2H2 type zinc finger, DNA-binding protein; NMR {Homo sapiens}

Probab=98.55  E-value=3.3e-08  Score=47.64  Aligned_cols=30  Identities=27%  Similarity=0.584  Sum_probs=18.8

Q ss_pred             CCCCceecCC--ccccccChhHHHHHHHHhhC
Q psy16578        119 QLNGSFICPK--CSNRYVYKHNLKQHLKFECG  148 (177)
Q Consensus       119 ~~~~~~~C~~--C~~~f~~~~~l~~H~~~h~~  148 (177)
                      .++++|.|.+  |++.|...+.|..|+++|++
T Consensus         4 ~~~k~~~C~~~~C~k~f~~~~~L~~H~~~H~~   35 (37)
T 1va1_A            4 GKKKQHICHIQGCGKVYGKTSHLRAHLRWHTG   35 (37)
T ss_dssp             SSCCCEECCSTTCCCEESCHHHHHHHHHHHHT
T ss_pred             CCCCCCCCCCCCCCCccCCHHHHHHHHHhcCC
Confidence            3456666653  66666666666666666655

>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=98.54  E-value=5.4e-08  Score=43.24  Aligned_cols=27  Identities=22%  Similarity=0.437  Sum_probs=24.7

Q ss_pred             CCceecCCccccccChhHHHHHHHHhh
Q psy16578        121 NGSFICPKCSNRYVYKHNLKQHLKFEC  147 (177)
Q Consensus       121 ~~~~~C~~C~~~f~~~~~l~~H~~~h~  147 (177)
                      +++|.|..|++.|.....|..|+++|+
T Consensus         1 ek~~~C~~C~k~f~~~~~l~~H~~~H~   27 (27)
T 2kvh_A            1 EKPFSCSLCPQRSRDFSAMTKHLRTHG   27 (27)
T ss_dssp             CCCEECSSSSCEESSHHHHHHHHHHCC
T ss_pred             CcCccCCCcChhhCCHHHHHHHHHHcc
Confidence            368999999999999999999999874

>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A

Probab=98.54  E-value=7.4e-08  Score=43.72  Aligned_cols=29  Identities=31%  Similarity=0.511  Sum_probs=26.4

Q ss_pred             CceecCCccccccChhHHHHHHHHhhCCC
Q psy16578        122 GSFICPKCSNRYVYKHNLKQHLKFECGVE  150 (177)
Q Consensus       122 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~~  150 (177)
                      ++|.|..|++.|.....|..|+++|++++
T Consensus         1 k~~~C~~C~k~f~~~~~l~~H~~~h~~~~   29 (30)
T 1klr_A            1 KTYQCQYCEFRSADSSNLKTHIKTKHSKE   29 (30)
T ss_dssp             CCCCCSSSSCCCSCSHHHHHHHHHHTSSC
T ss_pred             CCccCCCCCCccCCHHHHHHHHHHHccCC
Confidence            47999999999999999999999998854

>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=97.94  E-value=9.7e-09  Score=45.36  Aligned_cols=24  Identities=29%  Similarity=0.574  Sum_probs=17.9

Q ss_pred             CccCCCCcccccchhHHHHHHhhh
Q psy16578        152 QFKCPYCDKRCKLKGNLMSHIALK  175 (177)
Q Consensus       152 ~~~C~~C~~~f~~~~~l~~H~~~~  175 (177)
                      +|.|.+|++.|...++|..|+++|
T Consensus         2 p~~C~~C~k~f~~~~~l~~H~~~H   25 (26)
T 2lvu_A            2 PYVCERCGKRFVQSSQLANHIRHH   25 (26)
Confidence            477777777777777777777765

>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=98.53  E-value=4.6e-08  Score=43.81  Aligned_cols=28  Identities=25%  Similarity=0.731  Sum_probs=25.4

Q ss_pred             CCceecCCccccccChhHHHHHHHHhhC
Q psy16578        121 NGSFICPKCSNRYVYKHNLKQHLKFECG  148 (177)
Q Consensus       121 ~~~~~C~~C~~~f~~~~~l~~H~~~h~~  148 (177)
                      +++|.|..|++.|.....|..|+++|++
T Consensus         1 ~k~~~C~~C~k~f~~~~~l~~H~~~h~~   28 (28)
T 2kvf_A            1 MRPYSCSVCGKRFSLKHQMETHYRVHTG   28 (28)
T ss_dssp             CCSEECSSSCCEESCHHHHHHHHTTSCC
T ss_pred             CcCccCCCCCcccCCHHHHHHHHHhcCC
Confidence            3689999999999999999999998864

>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A

Probab=98.53  E-value=6.7e-08  Score=43.60  Aligned_cols=28  Identities=25%  Similarity=0.642  Sum_probs=25.9

Q ss_pred             CceecCCccccccChhHHHHHHHHhhCC
Q psy16578        122 GSFICPKCSNRYVYKHNLKQHLKFECGV  149 (177)
Q Consensus       122 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~  149 (177)
                      ++|.|..|++.|.....|..|+++|+++
T Consensus         1 k~~~C~~C~k~f~~~~~l~~H~~~H~~~   28 (29)
T 1rik_A            1 YKFACPECPKRFMRSDHLTLHILLHENK   28 (29)
T ss_dssp             CCEECSSSSCEESCSHHHHHHHTGGGSC
T ss_pred             CCccCCCCCchhCCHHHHHHHHHHhcCC
Confidence            4799999999999999999999999873

>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=98.53  E-value=7e-08  Score=43.80  Aligned_cols=29  Identities=14%  Similarity=0.260  Sum_probs=26.5

Q ss_pred             CCceecCCccccccChhHHHHHHHHhhCC
Q psy16578        121 NGSFICPKCSNRYVYKHNLKQHLKFECGV  149 (177)
Q Consensus       121 ~~~~~C~~C~~~f~~~~~l~~H~~~h~~~  149 (177)
                      +++|.|..|++.|.....|..|+++|+++
T Consensus         1 ~k~~~C~~C~~~f~~~~~l~~H~~~h~~~   29 (30)
T 2m0d_A            1 MKPYQCDYCGRSFSDPTSKMRHLETHDTD   29 (30)
T ss_dssp             CCCEECTTTCCEESCHHHHHHHHHTTCCC
T ss_pred             CcCccCCCCCcccCCHHHHHHHHHHhccC
Confidence            36899999999999999999999999873

>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=97.93  E-value=1.1e-08  Score=46.42  Aligned_cols=26  Identities=19%  Similarity=0.469  Sum_probs=18.6

Q ss_pred             CccCCCCcccccchhHHHHHHhhhcC
Q psy16578        152 QFKCPYCDKRCKLKGNLMSHIALKHT  177 (177)
Q Consensus       152 ~~~C~~C~~~f~~~~~l~~H~~~~h~  177 (177)
                      +|.|.+|++.|...++|..|+++|++
T Consensus         2 ~~~C~~C~k~f~~~~~l~~H~~~H~~   27 (29)
T 2lvt_A            2 PCQCVMCGKAFTQASSLIAHVRQHTG   27 (29)
Confidence            47777777777777777777776653

>3iuf_A Zinc finger protein UBI-D4; structural genomics consortium (SGC), C2H2, APO metal-binding, nucleus, phosphoprotein, transcription, TRAN regulation; 1.80A {Homo sapiens}

Probab=98.52  E-value=5.6e-08  Score=49.81  Aligned_cols=32  Identities=28%  Similarity=0.389  Sum_probs=27.2

Q ss_pred             HhhCCCCCccCCCCcccccchhHHHHHHh-hhcC
Q psy16578        145 FECGVEPQFKCPYCDKRCKLKGNLMSHIA-LKHT  177 (177)
Q Consensus       145 ~h~~~~~~~~C~~C~~~f~~~~~l~~H~~-~~h~  177 (177)
                      +|++ +++|.|.+|++.|....+|.+|++ +|.+
T Consensus         1 ~Ht~-~kp~~C~~C~k~F~~~~~L~~H~~~~H~~   33 (48)
T 3iuf_A            1 GEDR-DKPYACDICGKRYKNRPGLSYHYAHSHLA   33 (48)
T ss_dssp             -CTT-TSCEECTTTCCEESSHHHHHHHHHHSSCC
T ss_pred             CCCC-CcCEECCCcCcccCCHHHHHHHhhhhcCC
Confidence            3666 666999999999999999999999 7754

>1sp2_A SP1F2; zinc finger, transcription activation; NMR {Homo sapiens} SCOP: g.37.1.1 PDB: 1va2_A

Probab=98.52  E-value=5.9e-08  Score=44.63  Aligned_cols=26  Identities=31%  Similarity=0.597  Sum_probs=18.6

Q ss_pred             CccCC--CCcccccchhHHHHHHhhhcC
Q psy16578        152 QFKCP--YCDKRCKLKGNLMSHIALKHT  177 (177)
Q Consensus       152 ~~~C~--~C~~~f~~~~~l~~H~~~~h~  177 (177)
                      +|.|.  .|++.|...++|.+|+++|++
T Consensus         2 p~~C~~~~C~k~f~~~~~L~~H~~~H~~   29 (31)
T 1sp2_A            2 PFMCTWSYCGKRFTRSDELQRHKRTHTG   29 (31)
T ss_dssp             CCBCCSTTCCCBCSSHHHHHHHHTTTSC
T ss_pred             CcCCcCCCCCcccCCHhHHHHHHHHhcC
Confidence            47776  777777777777777777654

>2elm_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.52  E-value=8.7e-08  Score=46.10  Aligned_cols=31  Identities=19%  Similarity=0.446  Sum_probs=28.2

Q ss_pred             cCCCCceecCCccccccChhHHHHH-HHHhhC
Q psy16578        118 SQLNGSFICPKCSNRYVYKHNLKQH-LKFECG  148 (177)
Q Consensus       118 ~~~~~~~~C~~C~~~f~~~~~l~~H-~~~h~~  148 (177)
                      +.+++||.|..|++.|.....|..| ++.|++
T Consensus         4 H~~~k~~~C~~C~k~f~~~~~L~~H~~~~H~~   35 (37)
T 2elm_A            4 GSSGHLYYCSQCHYSSITKNCLKRHVIQKHSN   35 (37)
T ss_dssp             SSSSCEEECSSSSCEEECHHHHHHHHHHHTCC
T ss_pred             cCCCcCeECCCCCcccCCHHHHHHHHHHHccC
Confidence            4578999999999999999999999 888876

>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, classical zinc finger, transcription; NMR {Homo sapiens}

Probab=97.91  E-value=1.2e-08  Score=46.60  Aligned_cols=25  Identities=20%  Similarity=0.553  Sum_probs=15.5

Q ss_pred             CccCCCCcccccchhHHHHHHhhhc
Q psy16578        152 QFKCPYCDKRCKLKGNLMSHIALKH  176 (177)
Q Consensus       152 ~~~C~~C~~~f~~~~~l~~H~~~~h  176 (177)
                      +|.|.+|++.|....+|..|+++|+
T Consensus         3 ~~~C~~C~k~f~~~~~l~~H~~~h~   27 (30)
T 2lvr_A            3 PYVCIHCQRQFADPGALQRHVRIHT   27 (30)
Confidence            3666666666666666666666554

>1va1_A Transcription factor SP1; C2H2 type zinc finger, DNA-binding protein; NMR {Homo sapiens}

Probab=98.51  E-value=1.3e-07  Score=45.47  Aligned_cols=31  Identities=19%  Similarity=0.304  Sum_probs=26.9

Q ss_pred             hhCCCCCccCCC--CcccccchhHHHHHHhhhcC
Q psy16578        146 ECGVEPQFKCPY--CDKRCKLKGNLMSHIALKHT  177 (177)
Q Consensus       146 h~~~~~~~~C~~--C~~~f~~~~~l~~H~~~~h~  177 (177)
                      |++ +++|.|.+  |++.|...++|.+|+++|.+
T Consensus         3 ~~~-~k~~~C~~~~C~k~f~~~~~L~~H~~~H~~   35 (37)
T 1va1_A            3 PGK-KKQHICHIQGCGKVYGKTSHLRAHLRWHTG   35 (37)
T ss_dssp             SSS-CCCEECCSTTCCCEESCHHHHHHHHHHHHT
T ss_pred             CCC-CCCCCCCCCCCCCccCCHHHHHHHHHhcCC
Confidence            445 66799995  99999999999999999865

>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=98.51  E-value=9.8e-08  Score=42.94  Aligned_cols=26  Identities=31%  Similarity=0.788  Sum_probs=17.5

Q ss_pred             ceecCCccccccChhHHHHHHHHhhC
Q psy16578        123 SFICPKCSNRYVYKHNLKQHLKFECG  148 (177)
Q Consensus       123 ~~~C~~C~~~f~~~~~l~~H~~~h~~  148 (177)
                      +|.|..|++.|.....|..|+++|++
T Consensus         2 ~~~C~~C~k~f~~~~~l~~H~~~H~~   27 (29)
T 2m0f_A            2 PLKCRECGKQFTTSGNLKRHLRIHSG   27 (29)
T ss_dssp             CEECTTTSCEESCHHHHHHHHHHHHT
T ss_pred             CccCCCCCCccCChhHHHHHHHHhcC
Confidence            56666666666666666666666655

>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=98.51  E-value=4.4e-08  Score=44.15  Aligned_cols=26  Identities=31%  Similarity=0.646  Sum_probs=24.3

Q ss_pred             CccCCCCcccccchhHHHHHHhhhcC
Q psy16578        152 QFKCPYCDKRCKLKGNLMSHIALKHT  177 (177)
Q Consensus       152 ~~~C~~C~~~f~~~~~l~~H~~~~h~  177 (177)
                      +|.|.+|++.|....+|..|+++|++
T Consensus         2 ~~~C~~C~k~f~~~~~l~~H~~~H~~   27 (29)
T 2m0f_A            2 PLKCRECGKQFTTSGNLKRHLRIHSG   27 (29)
T ss_dssp             CEECTTTSCEESCHHHHHHHHHHHHT
T ss_pred             CccCCCCCCccCChhHHHHHHHHhcC
Confidence            59999999999999999999999865

>2kvg_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=98.51  E-value=4.2e-08  Score=43.67  Aligned_cols=27  Identities=15%  Similarity=0.433  Sum_probs=24.6

Q ss_pred             CCceecCCccccccChhHHHHHHHHhh
Q psy16578        121 NGSFICPKCSNRYVYKHNLKQHLKFEC  147 (177)
Q Consensus       121 ~~~~~C~~C~~~f~~~~~l~~H~~~h~  147 (177)
                      +++|.|..|++.|...+.|..|+++|+
T Consensus         1 ~k~~~C~~C~k~f~~~~~l~~H~~~H~   27 (27)
T 2kvg_A            1 AAPYRCPLCRAGCPSLASMQAHMRGHS   27 (27)
T ss_dssp             CCTEEETTTTEEESCHHHHHHHHTTCC
T ss_pred             CcCcCCCCCCcccCCHHHHHHHHHhcC
Confidence            368999999999999999999998873

>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A

Probab=98.50  E-value=1.1e-07  Score=42.86  Aligned_cols=28  Identities=25%  Similarity=0.629  Sum_probs=25.7

Q ss_pred             CceecCCccccccChhHHHHHHHHhhCC
Q psy16578        122 GSFICPKCSNRYVYKHNLKQHLKFECGV  149 (177)
Q Consensus       122 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~  149 (177)
                      ++|.|..|++.|.....|..|+++|+++
T Consensus         1 k~~~C~~C~~~f~~~~~l~~H~~~h~~~   28 (29)
T 1ard_A            1 RSFVCEVCTRAFARQEHLKRHYRSHTNE   28 (29)
T ss_dssp             CCCBCTTTCCBCSSHHHHHHHHHHHSCC
T ss_pred             CCeECCCCCcccCCHHHHHHHHHHhcCC
Confidence            4799999999999999999999999873

>1bhi_A CRE-BP1, ATF-2; CRE binding protein, transcriptional activation domain, Zn finger, DNA-binding regulatory protein; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.50  E-value=5.4e-08  Score=47.09  Aligned_cols=31  Identities=19%  Similarity=0.355  Sum_probs=26.7

Q ss_pred             hhCCCCCccCC--CCcccccchhHHHHHHhhhcC
Q psy16578        146 ECGVEPQFKCP--YCDKRCKLKGNLMSHIALKHT  177 (177)
Q Consensus       146 h~~~~~~~~C~--~C~~~f~~~~~l~~H~~~~h~  177 (177)
                      |++ +++|.|.  .|++.|...++|.+|+++|++
T Consensus         1 H~~-~k~~~C~~~~C~k~f~~~~~L~~H~~~H~~   33 (38)
T 1bhi_A            1 MSD-DKPFLCTAPGCGQRFTNEDHLAVHKHKHEM   33 (38)
T ss_dssp             CTT-CCCEECCCTTTCCEESSHHHHHHHHHHHHT
T ss_pred             CCC-CcceECCCCCCCcccCCHHHHHHHHHHhCC
Confidence            345 6679999  599999999999999999864

>1fv5_A First zinc finger of U-shaped; CCHC, protein interaction, transcription; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1y0j_B 2l6z_B

Probab=98.49  E-value=5.3e-08  Score=46.60  Aligned_cols=26  Identities=27%  Similarity=0.422  Sum_probs=20.2

Q ss_pred             CCCCCccccCccchhccChHHHHHHH
Q psy16578         44 PAGEDVFACPKCSKTYLRQYTLNAHL   69 (177)
Q Consensus        44 ~~~~~~~~C~~C~~~f~~~~~l~~H~   69 (177)
                      ..++++|.|..|++.|....+|..|+
T Consensus         3 ~~gekp~~C~~CgK~F~~~s~L~~H~   28 (36)
T 1fv5_A            3 LLKPARFMCLPCGIAFSSPSTLEAHQ   28 (36)
T ss_dssp             SSSCCCCEETTTTEECSCHHHHHHHH
T ss_pred             CCCccCeECCCCCCccCCHhHccCcC
Confidence            35667788888888888888888887

>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=98.47  E-value=1.2e-07  Score=42.59  Aligned_cols=28  Identities=32%  Similarity=0.621  Sum_probs=25.9

Q ss_pred             CceecCCccccccChhHHHHHHHHhhCC
Q psy16578        122 GSFICPKCSNRYVYKHNLKQHLKFECGV  149 (177)
Q Consensus       122 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~  149 (177)
                      ++|.|..|++.|.....|..|+++|+++
T Consensus         1 k~~~C~~C~~~f~~~~~l~~H~~~h~~~   28 (29)
T 2m0e_A            1 KEHKCPHCDKKFNQVGNLKAHLKIHIAD   28 (29)
T ss_dssp             CCCCCSSCCCCCCTTTHHHHHHHHHHSC
T ss_pred             CCCcCCCCCcccCCHHHHHHHHHHhccC
Confidence            4799999999999999999999999873

>2kfq_A FP1; protein, de novo protein; NMR {Synthetic}

Probab=98.47  E-value=9.1e-09  Score=48.01  Aligned_cols=26  Identities=35%  Similarity=0.608  Sum_probs=21.3

Q ss_pred             CccCCCCcccccchhHHHHHHhhhcC
Q psy16578        152 QFKCPYCDKRCKLKGNLMSHIALKHT  177 (177)
Q Consensus       152 ~~~C~~C~~~f~~~~~l~~H~~~~h~  177 (177)
                      +|.|.+|++.|...++|.+|+++|++
T Consensus         2 p~~C~~C~k~f~~~~~L~~H~~~H~~   27 (32)
T 2kfq_A            2 AFACPACPKRFMRSDALSKHIKTAFI   27 (32)
T ss_dssp             CSSSSSSCTTHHHHHTTSSSTTSSSS
T ss_pred             CCCCCCCCcccCCHHHHHHHHHHHcc
Confidence            58888888888888888888887754

>1zfd_A SWI5; DNA binding motif, zinc finger DNA binding domain; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=98.44  E-value=1.8e-07  Score=43.25  Aligned_cols=29  Identities=24%  Similarity=0.526  Sum_probs=26.4

Q ss_pred             CCceecC--CccccccChhHHHHHHHHhhCC
Q psy16578        121 NGSFICP--KCSNRYVYKHNLKQHLKFECGV  149 (177)
Q Consensus       121 ~~~~~C~--~C~~~f~~~~~l~~H~~~h~~~  149 (177)
                      +++|.|.  .|++.|.....|..|+++|+++
T Consensus         1 ek~~~C~~~~C~k~f~~~~~L~~H~~~H~~~   31 (32)
T 1zfd_A            1 DRPYSCDHPGCDKAFVRNHDLIRHKKSHQEK   31 (32)
T ss_dssp             CCSBCCCCTTCCCCBSSSHHHHHHHGGGTCC
T ss_pred             CCCCcCcCCCCCCccCCHHHHHHHHHHccCC
Confidence            3689999  8999999999999999999873

>2kfq_A FP1; protein, de novo protein; NMR {Synthetic}

Probab=98.43  E-value=5.5e-09  Score=48.78  Aligned_cols=31  Identities=26%  Similarity=0.567  Sum_probs=27.5

Q ss_pred             CceecCCccccccChhHHHHHHHHhhCCCCCc
Q psy16578        122 GSFICPKCSNRYVYKHNLKQHLKFECGVEPQF  153 (177)
Q Consensus       122 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~  153 (177)
                      +||.|..|++.|...+.|..|+++|++ +++|
T Consensus         1 kp~~C~~C~k~f~~~~~L~~H~~~H~~-~kp~   31 (32)
T 2kfq_A            1 YAFACPACPKRFMRSDALSKHIKTAFI-VVAL   31 (32)
T ss_dssp             CCSSSSSSCTTHHHHHTTSSSTTSSSS-SSSC
T ss_pred             CCCCCCCCCcccCCHHHHHHHHHHHcc-CCCC
Confidence            479999999999999999999999988 4445

>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=98.41  E-value=1.3e-07  Score=42.93  Aligned_cols=25  Identities=16%  Similarity=0.538  Sum_probs=18.2

Q ss_pred             CccCCCCcccccchhHHHHH-Hhhhc
Q psy16578        152 QFKCPYCDKRCKLKGNLMSH-IALKH  176 (177)
Q Consensus       152 ~~~C~~C~~~f~~~~~l~~H-~~~~h  176 (177)
                      +|.|..|++.|...++|.+| +++|.
T Consensus         2 ~~~C~~C~k~f~~~~~l~~H~~~~H~   27 (30)
T 1paa_A            2 AYACGLCNRAFTRRDLLIRHAQKIHS   27 (30)
T ss_dssp             CSBCTTTCCBCSSSHHHHHHHTTTSC
T ss_pred             CcCCcccCcccCChHHHHHHHHHHcc
Confidence            47777777777777777777 45554

>1sp2_A SP1F2; zinc finger, transcription activation; NMR {Homo sapiens} SCOP: g.37.1.1 PDB: 1va2_A

Probab=98.41  E-value=1.7e-07  Score=43.00  Aligned_cols=28  Identities=25%  Similarity=0.673  Sum_probs=25.5

Q ss_pred             CceecC--CccccccChhHHHHHHHHhhCC
Q psy16578        122 GSFICP--KCSNRYVYKHNLKQHLKFECGV  149 (177)
Q Consensus       122 ~~~~C~--~C~~~f~~~~~l~~H~~~h~~~  149 (177)
                      +||.|.  .|++.|.....|..|+++|+++
T Consensus         1 kp~~C~~~~C~k~f~~~~~L~~H~~~H~~~   30 (31)
T 1sp2_A            1 RPFMCTWSYCGKRFTRSDELQRHKRTHTGE   30 (31)
T ss_dssp             CCCBCCSTTCCCBCSSHHHHHHHHTTTSCC
T ss_pred             CCcCCcCCCCCcccCCHhHHHHHHHHhcCC
Confidence            479998  9999999999999999999873

>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1

Probab=98.41  E-value=1.3e-07  Score=41.85  Aligned_cols=26  Identities=23%  Similarity=0.546  Sum_probs=23.8

Q ss_pred             ceecCCccccccChhHHHHHHHHhhC
Q psy16578        123 SFICPKCSNRYVYKHNLKQHLKFECG  148 (177)
Q Consensus       123 ~~~C~~C~~~f~~~~~l~~H~~~h~~  148 (177)
                      +|.|..|++.|.....|..|+++|++
T Consensus         1 ~~~C~~C~k~f~~~~~l~~H~~~h~~   26 (27)
T 1znf_A            1 XYKCGLCERSFVEKSALSRHQRVHKN   26 (27)
T ss_dssp             -CBCSSSCCBCSSHHHHHHHGGGTCC
T ss_pred             CccCCCCCCcCCCHHHHHHHHHHcCC
Confidence            58999999999999999999999976

>2ab3_A ZNF29; zinc finger protein, beta BETA alpha, RREIIB-TR, RNA binding protein; NMR {Escherichia coli} SCOP: k.12.1.1 PDB: 2ab7_A

Probab=98.39  E-value=1.4e-07  Score=42.42  Aligned_cols=26  Identities=15%  Similarity=0.394  Sum_probs=16.3

Q ss_pred             CccCC--CCcccccchhHHHHHHhhhcC
Q psy16578        152 QFKCP--YCDKRCKLKGNLMSHIALKHT  177 (177)
Q Consensus       152 ~~~C~--~C~~~f~~~~~l~~H~~~~h~  177 (177)
                      +|.|.  .|++.|...++|.+|+++|++
T Consensus         2 ~~~C~~~~C~k~f~~~~~l~~H~~~H~~   29 (29)
T 2ab3_A            2 VYVCHFENCGRSFNDRRKLNRHKKIHTG   29 (29)
T ss_dssp             CEEECSTTTCEEESSHHHHHHHHGGGTC
T ss_pred             CCCCcCCcCcCccCCHHHHHHHHHHhCC
Confidence            36666  666666666666666666553

>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=97.73  E-value=4.4e-08  Score=44.29  Aligned_cols=27  Identities=19%  Similarity=0.455  Sum_probs=25.3

Q ss_pred             CceecCCccccccChhHHHHHHHHhhC
Q psy16578        122 GSFICPKCSNRYVYKHNLKQHLKFECG  148 (177)
Q Consensus       122 ~~~~C~~C~~~f~~~~~l~~H~~~h~~  148 (177)
                      ++|.|..|++.|.....|..|+++|++
T Consensus         1 k~~~C~~C~k~f~~~~~l~~H~~~H~~   27 (29)
T 2lvt_A            1 KPCQCVMCGKAFTQASSLIAHVRQHTG   27 (29)
Confidence            479999999999999999999999987

>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, classical zinc finger, transcription; NMR {Homo sapiens}

Probab=97.71  E-value=5e-08  Score=44.37  Aligned_cols=27  Identities=19%  Similarity=0.687  Sum_probs=25.6

Q ss_pred             CceecCCccccccChhHHHHHHHHhhC
Q psy16578        122 GSFICPKCSNRYVYKHNLKQHLKFECG  148 (177)
Q Consensus       122 ~~~~C~~C~~~f~~~~~l~~H~~~h~~  148 (177)
                      ++|.|..|++.|.....|..|+++|++
T Consensus         2 k~~~C~~C~k~f~~~~~l~~H~~~h~~   28 (30)
T 2lvr_A            2 KPYVCIHCQRQFADPGALQRHVRIHTG   28 (30)
Confidence            689999999999999999999999987

>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=97.66  E-value=6.8e-08  Score=42.46  Aligned_cols=26  Identities=23%  Similarity=0.755  Sum_probs=23.8

Q ss_pred             CceecCCccccccChhHHHHHHHHhh
Q psy16578        122 GSFICPKCSNRYVYKHNLKQHLKFEC  147 (177)
Q Consensus       122 ~~~~C~~C~~~f~~~~~l~~H~~~h~  147 (177)
                      ++|.|..|++.|.....|..|+++|+
T Consensus         1 kp~~C~~C~k~f~~~~~l~~H~~~H~   26 (26)
T 2lvu_A            1 KPYVCERCGKRFVQSSQLANHIRHHD   26 (26)
Confidence            47999999999999999999999873

>1ncs_A Peptide M30F, transcriptional factor SWI5; DNA binding motif, transcription regulation, zinc-finger; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=98.28  E-value=6.5e-07  Score=45.47  Aligned_cols=32  Identities=16%  Similarity=0.422  Sum_probs=28.6

Q ss_pred             cCCCCceecC--CccccccChhHHHHHHHHhhCC
Q psy16578        118 SQLNGSFICP--KCSNRYVYKHNLKQHLKFECGV  149 (177)
Q Consensus       118 ~~~~~~~~C~--~C~~~f~~~~~l~~H~~~h~~~  149 (177)
                      +.++++|.|.  .|++.|...+.|..|+++|+++
T Consensus        13 H~~~k~~~C~~~~C~k~F~~~~~L~~H~~~H~~e   46 (47)
T 1ncs_A           13 EMPDKTFECLFPGCTKTFKRRYNIRSHIQTHLED   46 (47)
T ss_dssp             EETTTEEECCCTTCCCEECSSSSHHHHHHHHTTT
T ss_pred             cCCCCCeECCCCCCCCccCCHHHHHHHHHHccCC
Confidence            4578999996  7999999999999999999873

>1zw8_A Zinc-responsive transcriptional regulator ZAP1; interacting C2H2 zinc fingers, beta-BETA-alpha, solution structure; NMR {Saccharomyces cerevisiae}

Probab=98.26  E-value=1.9e-06  Score=46.85  Aligned_cols=53  Identities=21%  Similarity=0.432  Sum_probs=44.3

Q ss_pred             eecC--CccccccChhHHHHHHH-HhhCCC-----CCccCC--CCcccccchhHHHHHHhhhc
Q psy16578        124 FICP--KCSNRYVYKHNLKQHLK-FECGVE-----PQFKCP--YCDKRCKLKGNLMSHIALKH  176 (177)
Q Consensus       124 ~~C~--~C~~~f~~~~~l~~H~~-~h~~~~-----~~~~C~--~C~~~f~~~~~l~~H~~~~h  176 (177)
                      +.|.  .|++.|.+...|..|+. .|.+.+     ..|.|.  .|++.+.....|..|+++.|
T Consensus         2 l~C~W~~C~~~f~~~~~l~~Hv~~~Hv~~~~~~~~~~~~C~W~~C~~~~~~~~~L~~Hir~~H   64 (64)
T 1zw8_A            2 LKCKWKECPESASSLFDLQRHLLKDHVSQDFKHPMEPLACNWEDCDFLGDDTASIVNHINAQH   64 (64)
T ss_dssp             CCCCCTTCCCCCSSHHHHHHHHHHHSCCCCCCCSSCCEECCCSSCCCEESSHHHHHHHHHHHC
T ss_pred             CeEeeCCCCCcCCCHHHHHHHHHhhccCcccCCCCCCCEeeCCCCcCCCCChHHHHhhccccC
Confidence            3454  49999999999999995 676643     269997  79999999999999999887

>1x6f_A Zinc finger protein 462; zinc finger domain, KIAA1803, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.26  E-value=2e-07  Score=54.28  Aligned_cols=57  Identities=12%  Similarity=0.220  Sum_probs=43.7

Q ss_pred             CCCCCCCccccCccchhccChHHHHHHHHHHhCCCCceeCCCCccccccchHHHhHHHHhcC
Q psy16578         42 DKPAGEDVFACPKCSKTYLRQYTLNAHLRYECGKRPKFKCPHCNKKCHQKCNLKSHIALKHD  103 (177)
Q Consensus        42 ~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~  103 (177)
                      ....++++|.|.+|++.|....+|..|++.|.+.++ |.|..|..    ...|..|.+.+.+
T Consensus        18 ~~H~~~kpy~C~~C~k~F~~~~~L~~H~~~Ht~ekp-~~C~~~~~----~~~~~~~~~~~~~   74 (88)
T 1x6f_A           18 GPRLQNSTYQCKHCDSKLQSTAELTSHLNIHNEEFQ-KRAKRQER----RKQLLSKQKYADG   74 (88)
T ss_dssp             CSCCCCSCEECSSSCCEESSHHHHHHHHHHHHHHHH-HHCCCCSC----CCCCCCCCCCCCC
T ss_pred             cccCCCCCCcCCCCCCEeCCHHHHHHHHHHhCCCCC-cccchhhh----HHHHHhhhccccc
Confidence            345677889999999999999999999999988754 99987653    3445555544444

>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=98.25  E-value=4e-07  Score=41.23  Aligned_cols=27  Identities=22%  Similarity=0.577  Sum_probs=24.5

Q ss_pred             CceecCCccccccChhHHHHH-HHHhhC
Q psy16578        122 GSFICPKCSNRYVYKHNLKQH-LKFECG  148 (177)
Q Consensus       122 ~~~~C~~C~~~f~~~~~l~~H-~~~h~~  148 (177)
                      ++|.|..|++.|...+.|..| +++|++
T Consensus         1 k~~~C~~C~k~f~~~~~l~~H~~~~H~~   28 (30)
T 1paa_A            1 KAYACGLCNRAFTRRDLLIRHAQKIHSG   28 (30)
T ss_dssp             CCSBCTTTCCBCSSSHHHHHHHTTTSCC
T ss_pred             CCcCCcccCcccCChHHHHHHHHHHccC
Confidence            479999999999999999999 688876

>2ab3_A ZNF29; zinc finger protein, beta BETA alpha, RREIIB-TR, RNA binding protein; NMR {Escherichia coli} SCOP: k.12.1.1 PDB: 2ab7_A

Probab=98.24  E-value=7.1e-07  Score=39.97  Aligned_cols=27  Identities=22%  Similarity=0.642  Sum_probs=24.6

Q ss_pred             CceecC--CccccccChhHHHHHHHHhhC
Q psy16578        122 GSFICP--KCSNRYVYKHNLKQHLKFECG  148 (177)
Q Consensus       122 ~~~~C~--~C~~~f~~~~~l~~H~~~h~~  148 (177)
                      ++|.|.  .|++.|...+.|..|+++|++
T Consensus         1 k~~~C~~~~C~k~f~~~~~l~~H~~~H~~   29 (29)
T 2ab3_A            1 MVYVCHFENCGRSFNDRRKLNRHKKIHTG   29 (29)
T ss_dssp             CCEEECSTTTCEEESSHHHHHHHHGGGTC
T ss_pred             CCCCCcCCcCcCccCCHHHHHHHHHHhCC
Confidence            468999  999999999999999999864

>1zw8_A Zinc-responsive transcriptional regulator ZAP1; interacting C2H2 zinc fingers, beta-BETA-alpha, solution structure; NMR {Saccharomyces cerevisiae}

Probab=97.97  E-value=2.1e-05  Score=42.65  Aligned_cols=53  Identities=19%  Similarity=0.456  Sum_probs=43.0

Q ss_pred             cccCc--cchhccChHHHHHHHH-HHhCCC-----CceeCC--CCccccccchHHHhHHHHhc
Q psy16578         50 FACPK--CSKTYLRQYTLNAHLR-YECGKR-----PKFKCP--HCNKKCHQKCNLKSHIALKH  102 (177)
Q Consensus        50 ~~C~~--C~~~f~~~~~l~~H~~-~h~~~~-----~~~~C~--~C~~~f~~~~~l~~H~~~~~  102 (177)
                      +.|.+  |++.|.+...|..|+. .|.+.+     .+|.|.  .|++.+.....|..|++..|
T Consensus         2 l~C~W~~C~~~f~~~~~l~~Hv~~~Hv~~~~~~~~~~~~C~W~~C~~~~~~~~~L~~Hir~~H   64 (64)
T 1zw8_A            2 LKCKWKECPESASSLFDLQRHLLKDHVSQDFKHPMEPLACNWEDCDFLGDDTASIVNHINAQH   64 (64)
T ss_dssp             CCCCCTTCCCCCSSHHHHHHHHHHHSCCCCCCCSSCCEECCCSSCCCEESSHHHHHHHHHHHC
T ss_pred             CeEeeCCCCCcCCCHHHHHHHHHhhccCcccCCCCCCCEeeCCCCcCCCCChHHHHhhccccC
Confidence            34544  9999999999999995 676554     259997  79999988899999998764

>1zu1_A DSRBP-ZFA, RNA binding protein ZFA; zinc finger protein, helix-loop-helix, helix-turn-helix; NMR {Xenopus laevis} SCOP: g.37.1.4 g.37.1.4

Probab=97.59  E-value=8.2e-05  Score=46.14  Aligned_cols=53  Identities=19%  Similarity=0.273  Sum_probs=43.7

Q ss_pred             CCceecCCccccccChhHHHHHHH--Hhh------------------------------CCCCCccCCCCcccccchhHH
Q psy16578        121 NGSFICPKCSNRYVYKHNLKQHLK--FEC------------------------------GVEPQFKCPYCDKRCKLKGNL  168 (177)
Q Consensus       121 ~~~~~C~~C~~~f~~~~~l~~H~~--~h~------------------------------~~~~~~~C~~C~~~f~~~~~l  168 (177)
                      .+++.|.+|...|.+...+..|..  .|.                              .....|.|.+|+..|++...|
T Consensus        30 ~~~~~C~~C~v~~~S~s~~~~H~~gkkH~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~C~~~f~s~~~~  109 (127)
T 1zu1_A           30 FSDTQCKVCSAVLISESQKLAHYQSRKHANKVRRYMAINQGEDSVPAKKFKAAPAEISDGEDRSKCCPVCNMTFSSPVVA  109 (127)
T ss_dssp             BCSSEETTTTEECCSHHHHHHHHHCHHHHHHHHHHHHHTTCCCCCSCCCCSCCSSCCSSCCCTTTEETTTTEECSSHHHH
T ss_pred             CCCCcCcCCCCEeCCHHHHHHHHCcHHHHHHHHHHhcccCcccCCCCCccCCCccccccCCCCCeEcCCCCCEeCCHHHH
Confidence            467899999999999999999983  331                              113358999999999999999


Q ss_pred             HHHHh
Q psy16578        169 MSHIA  173 (177)
Q Consensus       169 ~~H~~  173 (177)
                      ..|+.
T Consensus       110 ~~H~~  114 (127)
T 1zu1_A          110 ESHYI  114 (127)
T ss_dssp             HHHHT
T ss_pred             HHHHC
Confidence            99986

>1zr9_A Zinc finger protein 593; DNA binding, structural genomics, PSI, protein structure initiative, center for eukaryotic structural genomics, CESG; NMR {Homo sapiens} SCOP: g.37.1.4

Probab=97.40  E-value=3.2e-05  Score=47.27  Aligned_cols=29  Identities=24%  Similarity=0.471  Sum_probs=16.0

Q ss_pred             cCCCCceecCCccccccChhHHHHHHHHh
Q psy16578        118 SQLNGSFICPKCSNRYVYKHNLKQHLKFE  146 (177)
Q Consensus       118 ~~~~~~~~C~~C~~~f~~~~~l~~H~~~h  146 (177)
                      +.++++|.|..|++.|.+...|..|+++.
T Consensus        45 ~tGekpfyC~~C~K~F~~~~~L~~H~rsK   73 (124)
T 1zr9_A           45 LPGGGLHRCLACARYFIDSTNLKTHFRSK   73 (124)
T ss_dssp             SGGGGCSEETTTTEECSSHHHHHHHTTCH
T ss_pred             CCCCcceEcccCcchhCCHHHHHHHHhhh
Confidence            33455555555555555555555555543

>1zu1_A DSRBP-ZFA, RNA binding protein ZFA; zinc finger protein, helix-loop-helix, helix-turn-helix; NMR {Xenopus laevis} SCOP: g.37.1.4 g.37.1.4

Probab=97.25  E-value=0.00096  Score=41.28  Aligned_cols=83  Identities=14%  Similarity=0.176  Sum_probs=47.5

Q ss_pred             CccccCccchhccChHHHHHHH--HHHhCCCCceeCCCCccccccchHHHhHHHHhcCCCCCCCCccccccccCCCCcee
Q psy16578         48 DVFACPKCSKTYLRQYTLNAHL--RYECGKRPKFKCPHCNKKCHQKCNLKSHIALKHDQLLAPLAPRSYRRNSQLNGSFI  125 (177)
Q Consensus        48 ~~~~C~~C~~~f~~~~~l~~H~--~~h~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~  125 (177)
                      .++.|.+|+..|.+...+..|.  +.|......|.+. ++.....           .+.   ..............+.|.
T Consensus        31 ~~~~C~~C~v~~~S~s~~~~H~~gkkH~~~v~~~~~~-~~~~~~~-----------~~~---~~~~~~~~~~~~~~~~~~   95 (127)
T 1zu1_A           31 SDTQCKVCSAVLISESQKLAHYQSRKHANKVRRYMAI-NQGEDSV-----------PAK---KFKAAPAEISDGEDRSKC   95 (127)
T ss_dssp             CSSEETTTTEECCSHHHHHHHHHCHHHHHHHHHHHHH-TTCCCCC-----------SCC---CCSCCSSCCSSCCCTTTE
T ss_pred             CCCcCcCCCCEeCCHHHHHHHHCcHHHHHHHHHHhcc-cCcccCC-----------CCC---ccCCCccccccCCCCCeE
Confidence            3478889998888888888887  4454321212221 1100000           000   000000011233567789


Q ss_pred             cCCccccccChhHHHHHHHH
Q psy16578        126 CPKCSNRYVYKHNLKQHLKF  145 (177)
Q Consensus       126 C~~C~~~f~~~~~l~~H~~~  145 (177)
                      |..|+++|.+...|..|...
T Consensus        96 C~~C~~~f~s~~~~~~H~~g  115 (127)
T 1zu1_A           96 CPVCNMTFSSPVVAESHYIG  115 (127)
T ss_dssp             ETTTTEECSSHHHHHHHHTS
T ss_pred             cCCCCCEeCCHHHHHHHHCC
Confidence            99999999999999999873

>2e72_A POGO transposable element with ZNF domain; zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=96.97  E-value=0.00046  Score=34.09  Aligned_cols=24  Identities=29%  Similarity=0.789  Sum_probs=18.6

Q ss_pred             CCceecCCccccccChhHHHHHHH
Q psy16578        121 NGSFICPKCSNRYVYKHNLKQHLK  144 (177)
Q Consensus       121 ~~~~~C~~C~~~f~~~~~l~~H~~  144 (177)
                      ..+|.|+.|++.|.....|+.||+
T Consensus        10 ~~~~~CPrCn~~f~~~~sLr~Hmk   33 (49)
T 2e72_A           10 GGRKICPRCNAQFRVTEALRGHMC   33 (49)
T ss_dssp             SSCCCCTTTCCCCSSHHHHHHHHH
T ss_pred             CCceeCCcccccccchHHHHhhhh
Confidence            366788888888888888888876

>1zr9_A Zinc finger protein 593; DNA binding, structural genomics, PSI, protein structure initiative, center for eukaryotic structural genomics, CESG; NMR {Homo sapiens} SCOP: g.37.1.4

Probab=96.85  E-value=0.00028  Score=43.11  Aligned_cols=32  Identities=22%  Similarity=0.177  Sum_probs=27.3

Q ss_pred             HHHhhCCCCCccCCCCcccccchhHHHHHHhhh
Q psy16578        143 LKFECGVEPQFKCPYCDKRCKLKGNLMSHIALK  175 (177)
Q Consensus       143 ~~~h~~~~~~~~C~~C~~~f~~~~~l~~H~~~~  175 (177)
                      ...|+| +++|.|..|++.|.+.++|..|+++.
T Consensus        42 ded~tG-ekpfyC~~C~K~F~~~~~L~~H~rsK   73 (124)
T 1zr9_A           42 DPDLPG-GGLHRCLACARYFIDSTNLKTHFRSK   73 (124)
T ss_dssp             CSSSGG-GGCSEETTTTEECSSHHHHHHHTTCH
T ss_pred             cccCCC-CcceEcccCcchhCCHHHHHHHHhhh
Confidence            345777 56699999999999999999999854

>2e72_A POGO transposable element with ZNF domain; zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=96.84  E-value=0.0021  Score=31.76  Aligned_cols=22  Identities=23%  Similarity=0.646  Sum_probs=20.9

Q ss_pred             CccCCCCcccccchhHHHHHHh
Q psy16578        152 QFKCPYCDKRCKLKGNLMSHIA  173 (177)
Q Consensus       152 ~~~C~~C~~~f~~~~~l~~H~~  173 (177)
                      .|.|+.|+..|+....|+.||+
T Consensus        12 ~~~CPrCn~~f~~~~sLr~Hmk   33 (49)
T 2e72_A           12 RKICPRCNAQFRVTEALRGHMC   33 (49)
T ss_dssp             CCCCTTTCCCCSSHHHHHHHHH
T ss_pred             ceeCCcccccccchHHHHhhhh
Confidence            4999999999999999999997

>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}

Probab=96.70  E-value=0.00092  Score=30.92  Aligned_cols=24  Identities=33%  Similarity=0.609  Sum_probs=14.0

Q ss_pred             ccCCCCcccccchhHHHHHHhhhc
Q psy16578        153 FKCPYCDKRCKLKGNLMSHIALKH  176 (177)
Q Consensus       153 ~~C~~C~~~f~~~~~l~~H~~~~h  176 (177)
                      |.|++|.+.|.+...|..|....|
T Consensus         6 FiCP~C~~~l~s~~~L~~Hye~~H   29 (34)
T 3mjh_B            6 FICPQCMKSLGSADELFKHYEAVH   29 (34)
T ss_dssp             EECTTTCCEESSHHHHHHHHHHHT
T ss_pred             cCCcHHHHHcCCHHHHHHHHHhcc
Confidence            556666666666666666655544

>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}

Probab=96.50  E-value=0.0024  Score=41.52  Aligned_cols=52  Identities=19%  Similarity=0.431  Sum_probs=40.0

Q ss_pred             CceecCCccccccChhHHHHHHHHhhCCCCCccCCCCcccccchhHHHHHHhhhc
Q psy16578        122 GSFICPKCSNRYVYKHNLKQHLKFECGVEPQFKCPYCDKRCKLKGNLMSHIALKH  176 (177)
Q Consensus       122 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C~~~f~~~~~l~~H~~~~h  176 (177)
                      .+..|+.|+..+ .+..|..|+...-. .+.-.|..|+..+.. ..|..|..++.
T Consensus       109 ~~v~C~~C~~~~-~r~~l~~H~~~~C~-~r~~~C~~C~~~~~~-~~l~~H~~~~~  160 (170)
T 3hcs_A          109 ALMDCPQCQRPF-QKFHINIHILKDCP-RRQVSCDNCAASMAF-EDKEIHDQNCP  160 (170)
T ss_dssp             SEEECTTTCCEE-EGGGHHHHHHHTCT-TCEEECTTTCCEEEG-GGHHHHHTTCC
T ss_pred             eeeECCCCChHH-HHHHHHHHhhhhCC-CCCeECCCCCCccCH-HHHHhHHHhCc
Confidence            457899999887 66779999876656 455889999988865 47899987654

>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}

Probab=96.23  E-value=0.0046  Score=28.55  Aligned_cols=25  Identities=36%  Similarity=0.618  Sum_probs=18.4

Q ss_pred             eeCCCCccccccchHHHhHHHHhcC
Q psy16578         79 FKCPHCNKKCHQKCNLKSHIALKHD  103 (177)
Q Consensus        79 ~~C~~C~~~f~~~~~l~~H~~~~~~  103 (177)
                      |.|++|.+.|.+...|..|....|.
T Consensus         6 FiCP~C~~~l~s~~~L~~Hye~~H~   30 (34)
T 3mjh_B            6 FICPQCMKSLGSADELFKHYEAVHD   30 (34)
T ss_dssp             EECTTTCCEESSHHHHHHHHHHHTS
T ss_pred             cCCcHHHHHcCCHHHHHHHHHhccc
Confidence            7777777777777777777766664

>2jsp_A Transcriptional regulatory protein ROS; prokaryotic Cys2His2 zinc finger, gene regulation; NMR {Agrobacterium tumefaciens}

Probab=95.03  E-value=0.0081  Score=34.08  Aligned_cols=22  Identities=27%  Similarity=0.661  Sum_probs=11.6

Q ss_pred             ceecCCccccccChhHHHHHHHHhh
Q psy16578        123 SFICPKCSNRYVYKHNLKQHLKFEC  147 (177)
Q Consensus       123 ~~~C~~C~~~f~~~~~l~~H~~~h~  147 (177)
                      ...|..||+.|..   |.+|+.+++
T Consensus        21 ~iiClecGK~fK~---LkRHL~~~h   42 (87)
T 2jsp_A           21 HIVCLECGGSFKS---LKRHLTTHH   42 (87)
T ss_dssp             CEECTBTCCEESB---HHHHHHHTT
T ss_pred             ceEecccchhhHH---HHHHHHHcc
Confidence            3456566665552   445555543

>2elu_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2elw_A

Probab=94.45  E-value=0.024  Score=25.34  Aligned_cols=20  Identities=30%  Similarity=0.697  Sum_probs=10.6

Q ss_pred             ecCCccccccChhHHHHHHH
Q psy16578        125 ICPKCSNRYVYKHNLKQHLK  144 (177)
Q Consensus       125 ~C~~C~~~f~~~~~l~~H~~  144 (177)
                      .|.+|.+.+..-.+|..|++
T Consensus        11 hcrfckkkysdvknlikhir   30 (37)
T 2elu_A           11 HCRFCKKKYSDVKNLIKHIR   30 (37)
T ss_dssp             EETTTTEECSSHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            45555555555555555554

>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}

Probab=94.06  E-value=0.085  Score=34.09  Aligned_cols=79  Identities=19%  Similarity=0.381  Sum_probs=52.4

Q ss_pred             ccc--CccchhccChHHHHHHHHHHhCCCCceeCCCCccccccchHHHhHHHHhcCCCCCCCCccccccccCCCCceecC
Q psy16578         50 FAC--PKCSKTYLRQYTLNAHLRYECGKRPKFKCPHCNKKCHQKCNLKSHIALKHDQLLAPLAPRSYRRNSQLNGSFICP  127 (177)
Q Consensus        50 ~~C--~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~  127 (177)
                      ..|  .-|+..+. ...+..|.. ...- .+..|+.|+..+ ....|..|+.....                 .+...|.
T Consensus        83 v~C~n~GC~~~~~-~~~l~~H~~-~C~~-~~v~C~~C~~~~-~r~~l~~H~~~~C~-----------------~r~~~C~  141 (170)
T 3hcs_A           83 VKCPNEGCLHKME-LRHLEDHQA-HCEF-ALMDCPQCQRPF-QKFHINIHILKDCP-----------------RRQVSCD  141 (170)
T ss_dssp             EECCSTTCCCEEE-GGGHHHHHT-TCTT-SEEECTTTCCEE-EGGGHHHHHHHTCT-----------------TCEEECT
T ss_pred             cCCCCCCCCceec-HhHHHHHHh-cCCc-eeeECCCCChHH-HHHHHHHHhhhhCC-----------------CCCeECC
Confidence            345  34666544 446777763 2222 247899999877 55678889865443                 3567899


Q ss_pred             CccccccChhHHHHHHHHhhCCC
Q psy16578        128 KCSNRYVYKHNLKQHLKFECGVE  150 (177)
Q Consensus       128 ~C~~~f~~~~~l~~H~~~h~~~~  150 (177)
                      +|+..+.. ..|..|...+.|+.
T Consensus       142 ~C~~~~~~-~~l~~H~~~~~~~~  163 (170)
T 3hcs_A          142 NCAASMAF-EDKEIHDQNCPLAL  163 (170)
T ss_dssp             TTCCEEEG-GGHHHHHTTCCC--
T ss_pred             CCCCccCH-HHHHhHHHhCcChh
Confidence            99988854 55899999888743

>1wjv_A Cell growth regulating nucleolar protein LYAR; DNA-binding protein, C2H2 type zinc-finger, structural genomics; NMR {Mus musculus} SCOP: g.37.1.2 g.37.1.2

Probab=93.64  E-value=0.043  Score=30.42  Aligned_cols=46  Identities=22%  Similarity=0.467  Sum_probs=34.3

Q ss_pred             ccccCccchhccChHHHHHHHHHHhCCCCceeCCCCccccccchHHHhH
Q psy16578         49 VFACPKCSKTYLRQYTLNAHLRYECGKRPKFKCPHCNKKCHQKCNLKSH   97 (177)
Q Consensus        49 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C~~~f~~~~~l~~H   97 (177)
                      .|.|..||..+.. ..+..|...-.+... |.|-.|+..|.. ...+.|
T Consensus        10 ~F~C~~Cgd~lKK-~kv~~H~~~Cr~~~~-~SCIDC~~~F~~-~~y~~H   55 (79)
T 1wjv_A           10 FFTCNACGESVKK-IQVEKHVSNCRNCEC-LSCIDCGKDFWG-DDYKSH   55 (79)
T ss_dssp             EEEESSSCCEEET-THHHHHHHHCTTCCE-EEETTTTEEEEG-GGTTTC
T ss_pred             EEEcCCCCCeeec-ccchhHHhhCCCCCc-EEecccCCeeCC-CCEeCE
Confidence            3899999988875 488899755433334 999999999986 446555

>2k5c_A Uncharacterized protein PF0385; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Pyrococcus furiosus}

Probab=93.42  E-value=0.068  Score=29.59  Aligned_cols=41  Identities=24%  Similarity=0.395  Sum_probs=24.5

Q ss_pred             cccCccchhccChHHHHHHHHHHhCC---------------CCceeCCCCccccccc
Q psy16578         50 FACPKCSKTYLRQYTLNAHLRYECGK---------------RPKFKCPHCNKKCHQK   91 (177)
Q Consensus        50 ~~C~~C~~~f~~~~~l~~H~~~h~~~---------------~~~~~C~~C~~~f~~~   91 (177)
                      .+|++||....- ..|...|-..-..               .-.|+|+.||..|...
T Consensus         9 ~~~PlCG~~L~W-~eLIeQML~~en~~ei~kDr~~Fl~~~e~F~FkCP~CgEEFyG~   64 (95)
T 2k5c_A            9 AKCPICGSPLKW-EELIEEMLIIENFEEIVKDRERFLAQVEEFVFKCPVCGEEFYGK   64 (95)
T ss_dssp             EECSSSCCEECH-HHHHHHSTTCSTHHHHTTCHHHHHHHHHHSEEECTTTCCEEETT
T ss_pred             ccCCcCCCccCH-HHHHHHHHhhccHHHHHhhHHHHHHHHHHHhhcCCCccHHHhcc
Confidence            479999976553 3444444321100               0148999999988654

>2elu_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2elw_A

Probab=92.95  E-value=0.091  Score=23.45  Aligned_cols=23  Identities=35%  Similarity=0.702  Sum_probs=19.8

Q ss_pred             cCCCCcccccchhHHHHHHhhhc
Q psy16578        154 KCPYCDKRCKLKGNLMSHIALKH  176 (177)
Q Consensus       154 ~C~~C~~~f~~~~~l~~H~~~~h  176 (177)
                      .|..|.+.++.-.+|..|++..|
T Consensus        11 hcrfckkkysdvknlikhire~h   33 (37)
T 2elu_A           11 HCRFCKKKYSDVKNLIKHIRDAH   33 (37)
T ss_dssp             EETTTTEECSSHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhc
Confidence            06789999999999999999766

>2k9h_A Glycoprotein; hantavirus, zinc finger, CCHC, metal binding protein; NMR {Andes virus}

Probab=92.82  E-value=0.29  Score=24.84  Aligned_cols=48  Identities=23%  Similarity=0.497  Sum_probs=39.0

Q ss_pred             ceecCCccccccChhHHHHHHHHhhCCCCCccCCCCcc-cccchhHHHHHHhh
Q psy16578        123 SFICPKCSNRYVYKHNLKQHLKFECGVEPQFKCPYCDK-RCKLKGNLMSHIAL  174 (177)
Q Consensus       123 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C~~-~f~~~~~l~~H~~~  174 (177)
                      ...|.+|.....+...|..|...--.    =+|++|-. .-.+.++|+.|.++
T Consensus         3 smvC~~C~~ECET~kEl~~H~~sCp~----gqCPYC~~~~e~tesAlQaHfkv   51 (57)
T 2k9h_A            3 SMVCDVCHHECETAKELESHRQSCIN----GQCPYCMTITEATESALQAHYSI   51 (57)
T ss_dssp             TTBCTTTCCBCSSTTTHHHHHHHHTT----TBCTTTCCBCCSSHHHHHHHHTT
T ss_pred             cchhhHHHhhhhhHHHHHHHhccCCC----CCCCcccCcCCcCHHHHHHHHHH
Confidence            35799999999999999999887744    56888864 56788999999875

>2djr_A Zinc finger BED domain-containing protein 2; C2H2 type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=92.38  E-value=0.054  Score=30.04  Aligned_cols=12  Identities=17%  Similarity=0.426  Sum_probs=7.4

Q ss_pred             ceecCCcccccc
Q psy16578        123 SFICPKCSNRYV  134 (177)
Q Consensus       123 ~~~C~~C~~~f~  134 (177)
                      .-.|.+|++.+.
T Consensus        28 ~A~Ck~C~k~ls   39 (76)
T 2djr_A           28 YATCRLCGRQVS   39 (76)
T ss_dssp             CEEESSSCCBCC
T ss_pred             EEECCCCCCccC
Confidence            356677766664

>4ayb_P DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2pmz_P 2wb1_P 2y0s_P 3hkz_P 2waq_P 4b1o_P 4b1p_X

Probab=91.99  E-value=0.032  Score=27.41  Aligned_cols=30  Identities=30%  Similarity=0.803  Sum_probs=20.5

Q ss_pred             ceecCCccccccChhHHHHHHHHhhCCCCCccCCCCccc
Q psy16578        123 SFICPKCSNRYVYKHNLKQHLKFECGVEPQFKCPYCDKR  161 (177)
Q Consensus       123 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C~~~  161 (177)
                      .|.|..|++.|.....-         .-+.-.|++||+.
T Consensus         3 iY~C~rCg~~fs~~el~---------~lP~IrCpyCGyr   32 (48)
T 4ayb_P            3 VYRCGKCWKTFTDEQLK---------VLPGVRCPYCGYK   32 (48)
T ss_dssp             --CCCCTTTTCCCCCSC---------CCSSSCCTTTCCS
T ss_pred             EEEeeccCCCccHHHHh---------hCCCcccCccCcE
Confidence            48999999999765421         1345789999975

>1fu9_A U-shaped transcriptional cofactor; zinc-finger, beta-hairpin + alpha-helix; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1jn7_A

Probab=91.89  E-value=0.13  Score=23.81  Aligned_cols=21  Identities=19%  Similarity=0.436  Sum_probs=12.1

Q ss_pred             CceecCCccccccChhHHHHH
Q psy16578        122 GSFICPKCSNRYVYKHNLKQH  142 (177)
Q Consensus       122 ~~~~C~~C~~~f~~~~~l~~H  142 (177)
                      .++.|..|+-+|.....++.|
T Consensus         7 ~~~~C~~C~IsF~~l~ty~aH   27 (36)
T 1fu9_A            7 MKKYCSTCDISFNYVKTYLAH   27 (36)
T ss_dssp             CCSEETTTTEECSSHHHHHHH
T ss_pred             CcCeeccccceehhhHHHhhh
Confidence            345566666666655555555

>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82

Probab=91.87  E-value=0.092  Score=30.86  Aligned_cols=11  Identities=18%  Similarity=0.483  Sum_probs=10.3

Q ss_pred             ceeCCCCcccc
Q psy16578         78 KFKCPHCNKKC   88 (177)
Q Consensus        78 ~~~C~~C~~~f   88 (177)
                      ||.|..||..|
T Consensus        67 p~~C~~CG~~F   77 (105)
T 2gmg_A           67 PAQCRKCGFVF   77 (105)
T ss_dssp             CCBBTTTCCBC
T ss_pred             CcChhhCcCee
Confidence            69999999999

>1fu9_A U-shaped transcriptional cofactor; zinc-finger, beta-hairpin + alpha-helix; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1jn7_A

Probab=91.85  E-value=0.19  Score=23.24  Aligned_cols=24  Identities=17%  Similarity=0.293  Sum_probs=21.2

Q ss_pred             CCCccCCCCcccccchhHHHHHHh
Q psy16578        150 EPQFKCPYCDKRCKLKGNLMSHIA  173 (177)
Q Consensus       150 ~~~~~C~~C~~~f~~~~~l~~H~~  173 (177)
                      ...+.|..|+-+|++..++..|.+
T Consensus         6 ~~~~~C~~C~IsF~~l~ty~aHKk   29 (36)
T 1fu9_A            6 VMKKYCSTCDISFNYVKTYLAHKQ   29 (36)
T ss_dssp             CCCSEETTTTEECSSHHHHHHHHH
T ss_pred             cCcCeeccccceehhhHHHhhhhe
Confidence            345999999999999999999975

>2jvx_A NF-kappa-B essential modulator; CCHC classical zinc finger, NEMO zinc finger, beta-BETA- alpha fold, coiled coil, cytoplasm, disease mutation; NMR {Synthetic} PDB: 2jvy_A

Probab=91.83  E-value=0.11  Score=22.77  Aligned_cols=22  Identities=27%  Similarity=0.585  Sum_probs=16.9

Q ss_pred             CccCCCCcccccchhHHHHHHh
Q psy16578        152 QFKCPYCDKRCKLKGNLMSHIA  173 (177)
Q Consensus       152 ~~~C~~C~~~f~~~~~l~~H~~  173 (177)
                      .|.|++|.....+...|+.|..
T Consensus         3 k~~CpvCk~q~Pd~kt~~~H~e   24 (28)
T 2jvx_A            3 DFCCPKCQYQAPDMDTLQIHVM   24 (28)
T ss_dssp             CEECTTSSCEESSHHHHHHHHH
T ss_pred             cccCccccccCcChHHHHHHHH
Confidence            3778888888888888887764

>2ct5_A Zinc finger BED domain containing protein 1; DREF homolog, putative C-like transposable element, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.6

Probab=90.20  E-value=0.12  Score=28.40  Aligned_cols=10  Identities=20%  Similarity=0.647  Sum_probs=5.4

Q ss_pred             eecCCccccc
Q psy16578        124 FICPKCSNRY  133 (177)
Q Consensus       124 ~~C~~C~~~f  133 (177)
                      ..|..|.+.+
T Consensus        30 a~Ck~C~~~l   39 (73)
T 2ct5_A           30 IYCRICMAQI   39 (73)
T ss_dssp             CEETTTTEEC
T ss_pred             EECCCCCccc
Confidence            4566665554

>2jsp_A Transcriptional regulatory protein ROS; prokaryotic Cys2His2 zinc finger, gene regulation; NMR {Agrobacterium tumefaciens}

Probab=90.17  E-value=0.28  Score=27.82  Aligned_cols=22  Identities=27%  Similarity=0.576  Sum_probs=19.7

Q ss_pred             ccCCCCcccccchhHHHHHHhhhcC
Q psy16578        153 FKCPYCDKRCKLKGNLMSHIALKHT  177 (177)
Q Consensus       153 ~~C~~C~~~f~~~~~l~~H~~~~h~  177 (177)
                      ..|.+||+.|.   .|++|++.+||
T Consensus        22 iiClecGK~fK---~LkRHL~~~hg   43 (87)
T 2jsp_A           22 IVCLECGGSFK---SLKRHLTTHHS   43 (87)
T ss_dssp             EECTBTCCEES---BHHHHHHHTTC
T ss_pred             eEecccchhhH---HHHHHHHHccC
Confidence            78999999999   48899999876

>2yrk_A Zinc finger homeobox protein 4; structure genomics, ZF-C2H2 domain, ZFH-4, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.37.1.4

Probab=87.94  E-value=0.28  Score=24.93  Aligned_cols=20  Identities=20%  Similarity=0.615  Sum_probs=11.2

Q ss_pred             eecCCccccccChhHHHHHH
Q psy16578        124 FICPKCSNRYVYKHNLKQHL  143 (177)
Q Consensus       124 ~~C~~C~~~f~~~~~l~~H~  143 (177)
                      -.|.+|+..|..+..++.|+
T Consensus        14 ~eC~lC~vkYs~r~slqDHI   33 (55)
T 2yrk_A           14 PECTLCGVKYSARLSIRDHI   33 (55)
T ss_dssp             SCCTTTTCCCCSSSCHHHHH
T ss_pred             ccccccCcccccccchhhhh
Confidence            35555555555555555554

>1vq8_Z 50S ribosomal protein L37AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1vq4_Z* 1vq6_Z* 1vq5_Z* 1vq7_Z* 1vq9_Z* 1vqk_Z* 1vql_Z* 1vqm_Z* 1vqn_Z* 1vqo_Z* 1vqp_Z* 1yhq_Z* 1yi2_Z* 1yij_Z* 1yit_Z* 1yj9_Z* 1yjn_Z* 1yjw_Z* 2qa4_Z* 1s72_Z* ...

Probab=87.76  E-value=0.2  Score=28.27  Aligned_cols=14  Identities=21%  Similarity=0.838  Sum_probs=11.4

Q ss_pred             CCceecCCcccccc
Q psy16578        121 NGSFICPKCSNRYV  134 (177)
Q Consensus       121 ~~~~~C~~C~~~f~  134 (177)
                      .+.|.|..|++.|.
T Consensus        43 tGiW~C~~Cg~~~a   56 (83)
T 1vq8_Z           43 TGIWQCSYCDYKFT   56 (83)
T ss_dssp             TTEEEETTTCCEEE
T ss_pred             CCeEECCCCCCEec
Confidence            45699999998874

>3cc2_Z 50S ribosomal protein L37AE, 50S ribosomal protein L32E; genomic sequnece for R-proteins, ribonucleoprotein, ribosoma protein, RNA-binding; HET: 1MA OMU OMG UR3 PSU; 2.40A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 3cc4_Z* 3cc7_Z* 3cce_Z* 3ccj_Z* 3ccl_Z* 3ccm_Z* 3ccq_Z* 3ccr_Z* 3ccs_Z* 3ccu_Z* 3ccv_Z* 3cd6_Z* 3cma_Z* 3cme_Z* 3i55_Z* 3i56_Z* 3cpw_Y* 4adx_Z

Probab=87.40  E-value=0.26  Score=29.50  Aligned_cols=14  Identities=21%  Similarity=0.838  Sum_probs=11.6

Q ss_pred             CCceecCCcccccc
Q psy16578        121 NGSFICPKCSNRYV  134 (177)
Q Consensus       121 ~~~~~C~~C~~~f~  134 (177)
                      .+.|.|..|++.|.
T Consensus        76 vGIW~C~~Cgk~fA   89 (116)
T 3cc2_Z           76 TGIWQCSYCDYKFT   89 (116)
T ss_dssp             TTEEEETTTCCEEE
T ss_pred             ceeEECCCCCCEEE
Confidence            35799999999875

>1wir_A Protein arginine N-methyltransferase 3; C2H2 zinc finger domain, PRMT3, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.37.1.5

Probab=87.04  E-value=0.84  Score=27.70  Aligned_cols=29  Identities=17%  Similarity=0.194  Sum_probs=25.4

Q ss_pred             CCCceecCCccccccChhHHHHHHHHhhC
Q psy16578        120 LNGSFICPKCSNRYVYKHNLKQHLKFECG  148 (177)
Q Consensus       120 ~~~~~~C~~C~~~f~~~~~l~~H~~~h~~  148 (177)
                      .+.+..|.+|...|.+...+..|++..|+
T Consensus        12 e~~~~~CLFCd~~~~s~~~~l~H~k~~H~   40 (121)
T 1wir_A           12 GRQHTPCLFCDRLFASAEETFSHCKLEHQ   40 (121)
T ss_dssp             CCCCEECSSSCCEESSHHHHHHHHHHSSC
T ss_pred             CCCceeEecCCCcccCHHHHHHHHHHhcC
Confidence            44678999999999999999999998877

>3h0g_L DNA-directed RNA polymerases I, II, and III subunit rpabc4; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}

Probab=86.24  E-value=0.57  Score=24.82  Aligned_cols=32  Identities=19%  Similarity=0.558  Sum_probs=23.0

Q ss_pred             CCccccCccchhccChHHHHHHHHHHhCCCCceeCCCCcccccc
Q psy16578         47 EDVFACPKCSKTYLRQYTLNAHLRYECGKRPKFKCPHCNKKCHQ   90 (177)
Q Consensus        47 ~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C~~~f~~   90 (177)
                      .-.|.|..|+..+.-.           .. .+.+|+.||.....
T Consensus        19 ~v~Y~C~~Cg~~~~l~-----------~~-~~iRC~~CG~RILy   50 (63)
T 3h0g_L           19 TMIYLCADCGARNTIQ-----------AK-EVIRCRECGHRVMY   50 (63)
T ss_dssp             CCCCBCSSSCCBCCCC-----------SS-SCCCCSSSCCCCCB
T ss_pred             CeEEECCCCCCeeecC-----------CC-CceECCCCCcEEEE
Confidence            3459999999988744           12 34899999976543

>3sp4_A Aprataxin-like protein; HIT domain, zinc finger, DNA-binding protein, DNA deadenylas hydrolase; 1.80A {Schizosaccharomyces pombe} PDB: 3spd_A* 3spl_A* 3szq_A*

Probab=86.21  E-value=0.43  Score=31.83  Aligned_cols=24  Identities=21%  Similarity=0.368  Sum_probs=17.5

Q ss_pred             CccCCCCcccccc-hhHHHHHHhhh
Q psy16578        152 QFKCPYCDKRCKL-KGNLMSHIALK  175 (177)
Q Consensus       152 ~~~C~~C~~~f~~-~~~l~~H~~~~  175 (177)
                      ++.|..|++.|.+ -..|+.|+..+
T Consensus       169 ~L~C~~C~~~f~n~~~~LK~HL~~e  193 (204)
T 3sp4_A          169 DLKCWRCGETFGRHFTKLKAHLQEE  193 (204)
T ss_dssp             CCBCTTTCCBCTTCHHHHHHHHHHH
T ss_pred             CceeCCCCchhhcccHHHHHHHHHH
Confidence            4788888888865 67777777643

>3jyw_9 60S ribosomal protein L43; eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus}

Probab=85.35  E-value=0.63  Score=25.35  Aligned_cols=15  Identities=20%  Similarity=0.592  Sum_probs=12.2

Q ss_pred             CCCceecCCcccccc
Q psy16578        120 LNGSFICPKCSNRYV  134 (177)
Q Consensus       120 ~~~~~~C~~C~~~f~  134 (177)
                      ..+.|.|..|++.|.
T Consensus        41 a~GIW~C~~C~~~~A   55 (72)
T 3jyw_9           41 AAGIWTCSCCKKTVA   55 (72)
T ss_dssp             SSSCBCCSSSCCCCC
T ss_pred             CCCeEECCCCCCEEe
Confidence            456799999998875

>1wjv_A Cell growth regulating nucleolar protein LYAR; DNA-binding protein, C2H2 type zinc-finger, structural genomics; NMR {Mus musculus} SCOP: g.37.1.2 g.37.1.2

Probab=84.93  E-value=0.6  Score=25.86  Aligned_cols=46  Identities=24%  Similarity=0.391  Sum_probs=33.6

Q ss_pred             ceecCCccccccChhHHHHHHHHhhCCCCCccCCCCcccccchhHHHHH
Q psy16578        123 SFICPKCSNRYVYKHNLKQHLKFECGVEPQFKCPYCDKRCKLKGNLMSH  171 (177)
Q Consensus       123 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C~~~f~~~~~l~~H  171 (177)
                      -|.|..|+..++ +..+..|...-.+... |.|-.|++.|... .++.|
T Consensus        10 ~F~C~~Cgd~lK-K~kv~~H~~~Cr~~~~-~SCIDC~~~F~~~-~y~~H   55 (79)
T 1wjv_A           10 FFTCNACGESVK-KIQVEKHVSNCRNCEC-LSCIDCGKDFWGD-DYKSH   55 (79)
T ss_dssp             EEEESSSCCEEE-TTHHHHHHHHCTTCCE-EEETTTTEEEEGG-GTTTC
T ss_pred             EEEcCCCCCeee-cccchhHHhhCCCCCc-EEecccCCeeCCC-CEeCE
Confidence            489999997775 4458999776554234 9999999999853 34444

>1yuz_A Nigerythrin; rubrythrin, rubredoxin, hemerythrin, electron transfer, DIIR center, oxidoreductase; 1.40A {Desulfovibrio vulgaris subsp} SCOP: a.25.1.1 g.41.5.1 PDB: 1yv1_A 1yux_A

Probab=84.80  E-value=0.41  Score=31.92  Aligned_cols=26  Identities=27%  Similarity=0.598  Sum_probs=20.4

Q ss_pred             CCccccCccchhccChHHHHHHHHHHhCCCCceeCCCCcc
Q psy16578         47 EDVFACPKCSKTYLRQYTLNAHLRYECGKRPKFKCPHCNK   86 (177)
Q Consensus        47 ~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C~~   86 (177)
                      ...|.|..||..+..              ..|+.||.||-
T Consensus       169 ~~~~~C~~CG~i~~g--------------~~p~~CP~C~~  194 (202)
T 1yuz_A          169 DKFHLCPICGYIHKG--------------EDFEKCPICFR  194 (202)
T ss_dssp             CCEEECSSSCCEEES--------------SCCSBCTTTCC
T ss_pred             CcEEEECCCCCEEcC--------------cCCCCCCCCCC
Confidence            356999999988762              25699999984

>3sp4_A Aprataxin-like protein; HIT domain, zinc finger, DNA-binding protein, DNA deadenylas hydrolase; 1.80A {Schizosaccharomyces pombe} PDB: 3spd_A* 3spl_A* 3szq_A*

Probab=83.82  E-value=0.76  Score=30.64  Aligned_cols=26  Identities=27%  Similarity=0.482  Sum_probs=23.1

Q ss_pred             CCceecCCccccccC-hhHHHHHHHHh
Q psy16578        121 NGSFICPKCSNRYVY-KHNLKQHLKFE  146 (177)
Q Consensus       121 ~~~~~C~~C~~~f~~-~~~l~~H~~~h  146 (177)
                      ..+..|..|+..|.+ -..|..|+..|
T Consensus       167 ~~~L~C~~C~~~f~n~~~~LK~HL~~e  193 (204)
T 3sp4_A          167 QEDLKCWRCGETFGRHFTKLKAHLQEE  193 (204)
T ss_dssp             GSCCBCTTTCCBCTTCHHHHHHHHHHH
T ss_pred             CCCceeCCCCchhhcccHHHHHHHHHH
Confidence            568999999999987 88999998876

>1wir_A Protein arginine N-methyltransferase 3; C2H2 zinc finger domain, PRMT3, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.37.1.5

Probab=83.30  E-value=1.5  Score=26.54  Aligned_cols=31  Identities=16%  Similarity=0.271  Sum_probs=25.9

Q ss_pred             CCCCccccCccchhccChHHHHHHHHHHhCC
Q psy16578         45 AGEDVFACPKCSKTYLRQYTLNAHLRYECGK   75 (177)
Q Consensus        45 ~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~   75 (177)
                      ....+..|=.|...|.+...+..|++..|+-
T Consensus        11 ~e~~~~~CLFCd~~~~s~~~~l~H~k~~H~F   41 (121)
T 1wir_A           11 HGRQHTPCLFCDRLFASAEETFSHCKLEHQF   41 (121)
T ss_dssp             CCCCCEECSSSCCEESSHHHHHHHHHHSSCC
T ss_pred             CCCCceeEecCCCcccCHHHHHHHHHHhcCC
Confidence            3445689999999999999999999988754

>2i5o_A DNA polymerase ETA; zinc finger, DNA polymerase,POL ETA, UBZ, ubiquitin-binding zinc finger, translesion synthesis, ubiquitin-binding domain; HET: DNA; NMR {Homo sapiens}

Probab=83.06  E-value=1.1  Score=21.23  Aligned_cols=25  Identities=16%  Similarity=0.529  Sum_probs=18.0

Q ss_pred             CCceecCCccccccChhHHHHHHHHh
Q psy16578        121 NGSFICPKCSNRYVYKHNLKQHLKFE  146 (177)
Q Consensus       121 ~~~~~C~~C~~~f~~~~~l~~H~~~h  146 (177)
                      ...|.|..|++.+.. ..+..|.--|
T Consensus         7 ~~~~~C~~C~~~i~~-~~~~EH~D~H   31 (39)
T 2i5o_A            7 EDQVPCEKCGSLVPV-WDMPEHMDYH   31 (39)
T ss_dssp             CCEEECTTTCCEEEG-GGHHHHHHHH
T ss_pred             CCCcccccccCcCCc-ccccchhhHH
Confidence            456789999888877 4457776655

>1ffk_W Ribosomal protein L37AE; ribosome assembly, RNA-RNA, protein-RNA, protein-protein; 2.40A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1jj2_Y 1k73_1* 1k8a_1* 1k9m_1* 1kc8_1* 1kd1_1* 1kqs_Y* 1m1k_1* 1m90_1* 1n8r_1* 1nji_1* 1q7y_1* 1q81_1* 1q82_1* 1q86_1* 1qvf_Y 1qvg_Y 1w2b_Y 3cxc_Y*

Probab=81.57  E-value=0.52  Score=25.78  Aligned_cols=15  Identities=13%  Similarity=0.554  Sum_probs=11.7

Q ss_pred             CCceecCCccccccC
Q psy16578        121 NGSFICPKCSNRYVY  135 (177)
Q Consensus       121 ~~~~~C~~C~~~f~~  135 (177)
                      .+.|.|..|++.|.-
T Consensus        43 ~GIW~C~~C~~~~AG   57 (73)
T 1ffk_W           43 TSIWVCGHCGYKIAG   57 (73)
T ss_pred             eEEEECCCCCcEEEC
Confidence            456999999988753

>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}

Probab=80.87  E-value=1  Score=27.17  Aligned_cols=28  Identities=18%  Similarity=0.572  Sum_probs=21.4

Q ss_pred             CCceecCCccccccChhHHHHHHHHhhCCCCCc-cCCCCccc
Q psy16578        121 NGSFICPKCSNRYVYKHNLKQHLKFECGVEPQF-KCPYCDKR  161 (177)
Q Consensus       121 ~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~-~C~~C~~~  161 (177)
                      ...|.|..|+..|...             ..++ .|+.|+..
T Consensus        71 p~~~~C~~CG~~~e~~-------------~~~~~~CP~Cgs~   99 (119)
T 2kdx_A           71 KVELECKDCSHVFKPN-------------ALDYGVCEKCHSK   99 (119)
T ss_dssp             CCEEECSSSSCEECSC-------------CSTTCCCSSSSSC
T ss_pred             cceEEcCCCCCEEeCC-------------CCCCCcCccccCC
Confidence            3469999999998762             3458 89999854

>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress, oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A 3pza_A 3qvd_A 1nnq_A 2hr5_A

Probab=80.27  E-value=0.99  Score=29.18  Aligned_cols=26  Identities=35%  Similarity=0.811  Sum_probs=20.3

Q ss_pred             CCceecCCccccccChhHHHHHHHHhhCCCCCccCCCCcc
Q psy16578        121 NGSFICPKCSNRYVYKHNLKQHLKFECGVEPQFKCPYCDK  160 (177)
Q Consensus       121 ~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C~~  160 (177)
                      +..|.|..||..+.             + +.|-.|++|+.
T Consensus       136 ~~~~~C~~CG~i~~-------------~-~~p~~CP~Cg~  161 (170)
T 3pwf_A          136 KKVYICPICGYTAV-------------D-EAPEYCPVCGA  161 (170)
T ss_dssp             SCEEECTTTCCEEE-------------S-CCCSBCTTTCC
T ss_pred             CCeeEeCCCCCeeC-------------C-CCCCCCCCCCC
Confidence            46799999998875             2 45579999984

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	177
d2csha1	53	Zinc finger protein 297b {Human (Homo sapiens) [Ta	99.79
d2csha1	53	Zinc finger protein 297b {Human (Homo sapiens) [Ta	99.63
d2cota2	38	Zinc finger and SCAN domain-containing protein 16,	99.41
d2epsa1	39	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	99.4
d1x6ha2	36	Transcriptional repressor CTCF {Human (Homo sapien	99.37
d1a1ia2	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	99.36
d1p7aa_	37	Kruppel-like factor 3, Bklf {Mouse (Mus musculus)	99.35
d2ct1a2	36	Transcriptional repressor CTCF {Human (Homo sapien	99.35
d1x6ea1	33	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	99.33
d1srka_	35	Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musc	99.28
d1a1ia2	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	99.28
d1x6ea1	33	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	99.25
d2adra1	29	ADR1 {Synthetic, based on Saccharomyces cerevisiae	99.23
d1sp1a_	29	Transcription factor sp1 {Human (Homo sapiens) [Ta	99.2
d2adra1	29	ADR1 {Synthetic, based on Saccharomyces cerevisiae	99.18
d1x6ea2	26	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	99.18
d2cota2	38	Zinc finger and SCAN domain-containing protein 16,	99.17
d1sp1a_	29	Transcription factor sp1 {Human (Homo sapiens) [Ta	99.17
d1srka_	35	Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musc	99.15
d1x6ha2	36	Transcriptional repressor CTCF {Human (Homo sapien	99.14
d2dlka2	36	Zinc finger protein 692, ZNF692 {Human (Homo sapie	99.14
d2epsa1	39	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	99.14
d1x6ea2	26	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	99.13
d2ct1a2	36	Transcriptional repressor CTCF {Human (Homo sapien	99.07
d2glia3	30	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	99.06
d1ncsa_	47	SWI5 zinc-finger domains {Baker's yeast (Saccharom	99.04
d1ubdc3	30	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	99.03
d1p7aa_	37	Kruppel-like factor 3, Bklf {Mouse (Mus musculus)	99.02
d1ubdc3	30	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	98.99
d2glia3	30	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	98.99
d1a1ia1	29	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	98.98
d1sp2a_	31	Transcription factor sp1 {Human (Homo sapiens) [Ta	98.93
d1zfda_	32	SWI5 zinc-finger domains {Baker's yeast (Saccharom	98.91
d2dmda2	26	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	98.89
d1ncsa_	47	SWI5 zinc-finger domains {Baker's yeast (Saccharom	98.89
d1ubdc4	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	98.88
d1sp2a_	31	Transcription factor sp1 {Human (Homo sapiens) [Ta	98.84
d1a1ia1	29	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	98.82
d2dlka2	36	Zinc finger protein 692, ZNF692 {Human (Homo sapie	98.78
d1zfda_	32	SWI5 zinc-finger domains {Baker's yeast (Saccharom	98.77
d1a1ia3	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	98.76
d1ubdc4	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	98.68
d2dmda3	29	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	98.65
d2epqa1	32	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	98.57
d1klra_	30	ZFY {Human (Homo sapiens) [TaxId: 9606]}	98.53
d2dmda2	26	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	98.49
d1a1ia3	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	98.45
d2epqa1	32	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	98.4
d2dmda3	29	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	98.33
d2glia5	29	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	98.29
d2glia5	29	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	98.24
d1bboa1	28	Enhancer binding protein {Human (Homo sapiens) [Ta	98.24
d1ubdc2	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	98.15
d2dmda1	28	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	98.15
d1bboa1	28	Enhancer binding protein {Human (Homo sapiens) [Ta	98.14
d1bboa2	29	Enhancer binding protein {Human (Homo sapiens) [Ta	98.13
d2epra1	35	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	98.11
d1klra_	30	ZFY {Human (Homo sapiens) [TaxId: 9606]}	98.03
d1znfa_	26	XFIN, third domain {Xenopus laevis [TaxId: 8355]}	98.02
d1njqa_	37	SUPERMAN zinc finger domain {Thale cress (Arabidop	98.01
d2adra2	31	ADR1 {Synthetic, based on Saccharomyces cerevisiae	98.0
d1bboa2	29	Enhancer binding protein {Human (Homo sapiens) [Ta	98.0
d2dlqa3	30	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	97.95
d2dlqa4	27	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	97.9
d2dmda1	28	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	97.9
d1ubdc2	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	97.89
d2dlqa3	30	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	97.85
d1njqa_	37	SUPERMAN zinc finger domain {Thale cress (Arabidop	97.85
d1x5wa2	29	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	97.82
d1znfa_	26	XFIN, third domain {Xenopus laevis [TaxId: 8355]}	97.76
d2drpa2	26	Tramtrack protein (two zinc-finger peptide) {Droso	97.74
d1x5wa1	28	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	97.68
d2dlqa4	27	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	97.63
d2csha2	44	Zinc finger protein 297b {Human (Homo sapiens) [Ta	97.63
d2j7ja2	29	Transcription factor IIIA, TFIIIA {Xenopus laevis	97.55
d2epra1	35	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	97.54
d2ct1a1	28	Transcriptional repressor CTCF {Human (Homo sapien	97.52
d2dlqa1	26	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	97.51
d2adra2	31	ADR1 {Synthetic, based on Saccharomyces cerevisiae	97.47
d1tf3a2	30	Transcription factor IIIA, TFIIIA {Xenopus laevis	97.45
d1x5wa2	29	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	97.41
d1tf3a2	30	Transcription factor IIIA, TFIIIA {Xenopus laevis	97.39
d2j7ja2	29	Transcription factor IIIA, TFIIIA {Xenopus laevis	97.35
d2csha2	44	Zinc finger protein 297b {Human (Homo sapiens) [Ta	97.35
d2glia4	31	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	97.32
d2dlqa2	28	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	97.28
d1bhia_	38	Transactivation domain of cre-bp1/atf-2 {Human (Ho	97.22
d2dlqa1	26	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	97.22
d1bhia_	38	Transactivation domain of cre-bp1/atf-2 {Human (Ho	97.18
d2drpa2	26	Tramtrack protein (two zinc-finger peptide) {Droso	97.02
d2eppa1	53	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	96.84
d2ct1a1	28	Transcriptional repressor CTCF {Human (Homo sapien	96.82
d2eppa1	53	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	96.75
d2dlqa2	28	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	96.66
d1x6ha1	37	Transcriptional repressor CTCF {Human (Homo sapien	96.57
d2glia4	31	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	96.52
d1x5wa1	28	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	96.48
d2glia2	33	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	96.35
d1tf3a1	31	Transcription factor IIIA, TFIIIA {Xenopus laevis	96.26
d2j7ja1	28	Transcription factor IIIA, TFIIIA {Xenopus laevis	96.11
d2j7ja1	28	Transcription factor IIIA, TFIIIA {Xenopus laevis	95.91
d2ctda2	30	Zinc finger protein 512, ZNF512 {Human (Homo sapie	95.76
d2ctda2	30	Zinc finger protein 512, ZNF512 {Human (Homo sapie	95.63
d1x6ha1	37	Transcriptional repressor CTCF {Human (Homo sapien	95.42
d1y0jb1	36	U-shaped transcription factor, different fingers {	95.41
d1zr9a1	67	Zinc finger protein 593, ZNF593 {Human (Homo sapie	95.4
d1yuja_	54	GAGA factor {Drosophila melanogaster [TaxId: 7227]	95.36
d1ubdc1	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	95.33
d2ghfa2	36	Zinc fingers and homeoboxes protein 1, ZHX1 {Human	95.16
d1tf3a3	31	Transcription factor IIIA, TFIIIA {Xenopus laevis	94.99
d1ubdc1	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	94.98
d1y0jb1	36	U-shaped transcription factor, different fingers {	94.74
d1zr9a1	67	Zinc finger protein 593, ZNF593 {Human (Homo sapie	94.71
d1yuja_	54	GAGA factor {Drosophila melanogaster [TaxId: 7227]	94.49
d2drpa1	37	Tramtrack protein (two zinc-finger peptide) {Droso	94.49
d2glia2	33	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	94.45
d1vd4a_	62	Transcription initiation factor TFIIE-alpha {Human	93.32
d2drpa1	37	Tramtrack protein (two zinc-finger peptide) {Droso	93.25
d2dlka1	30	Zinc finger protein 692, ZNF692 {Human (Homo sapie	93.21
d1x6fa1	75	Zinc finger protein 462, ZNF462 {Human (Homo sapie	92.5
d1x6fa1	75	Zinc finger protein 462, ZNF462 {Human (Homo sapie	91.65
d1wjpa3	41	Zinc finger protein 295, ZNF295 {Human (Homo sapie	90.83
d1m36a_	33	Monocytic leukemia zinc finger protein Moz {Human	90.66
d1nnqa2	37	Rubrerythrin, C-terminal domain {Archaeon Pyrococc	89.23
d1yuza2	36	Nigerythrin, C-terminal domain {Desulfovibrio vulg	88.98
d2gmga1	105	Hypothetical protein PF0610 {Pyrococcus furiosus [	87.68
d1wira_	121	Protein arginine N-methyltransferase 3 {Mouse (Mus	86.44
d2ghfa1	58	Zinc fingers and homeoboxes protein 1, ZHX1 {Human	85.63
d2ct5a1	60	Zinc finger BED domain-containing protein 1 {Human	85.24
d2yrka1	48	Zinc finger homeobox protein 4, ZFHX4 {Human (Homo	85.21
d2akla2	38	Hypothetical protein PA0128, N-terminal domain {Ps	84.37
d1zu1a2	55	dsRNA-binding protein ZFa (ZNF346, JAZ) {African c	84.22
d1wira_	121	Protein arginine N-methyltransferase 3 {Mouse (Mus	83.4
d1jj2y_	73	Ribosomal protein L37ae {Archaeon Haloarcula maris	83.07
d1vqoz1	73	Ribosomal protein L37ae {Archaeon Haloarcula maris	83.03
d1fu9a_	36	U-shaped transcription factor, different fingers {	83.01
d1wjpa2	26	Zinc finger protein 295, ZNF295 {Human (Homo sapie	81.74
d1wjpa1	42	Zinc finger protein 295, ZNF295 {Human (Homo sapie	80.2
d2glia1	32	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	80.04

>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.79  E-value=5.5e-20  Score=96.35  Aligned_cols=53  Identities=23%  Similarity=0.639  Sum_probs=49.9

Q ss_pred             CCceecCCccccccChhHHHHHHHHhhCCCCCccCCCCcccccchhHHHHHHhhh
Q psy16578        121 NGSFICPKCSNRYVYKHNLKQHLKFECGVEPQFKCPYCDKRCKLKGNLMSHIALK  175 (177)
Q Consensus       121 ~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C~~~f~~~~~l~~H~~~~  175 (177)
                      |++|.| .|++.|.....|..|+++|++ +++|.|.+|++.|+..++|.+|+++|
T Consensus         1 EK~y~C-~Cgk~F~~~~~l~~H~~~Ht~-ekpy~C~~C~k~F~~~~~L~~H~r~H   53 (53)
T d2csha1           1 DKLYPC-QCGKSFTHKSQRDRHMSMHLG-LRPYGCGVCGKKFKMKHHLVGHMKIH   53 (53)
T ss_dssp             CCCEEC-TTSCEESSHHHHHHHHHHHSC-CCSEECTTTSCEESSSHHHHHHHTTT
T ss_pred             CcCCCC-CCCCeECCHHHhHHHhhcccc-ccCCcCCCcCCEecCHHHHHHHHhcC
Confidence            589999 599999999999999999999 66699999999999999999999987

>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.63  E-value=1.4e-16  Score=83.11  Aligned_cols=53  Identities=26%  Similarity=0.705  Sum_probs=48.5

Q ss_pred             CCccccCccchhccChHHHHHHHHHHhCCCCceeCCCCccccccchHHHhHHHHh
Q psy16578         47 EDVFACPKCSKTYLRQYTLNAHLRYECGKRPKFKCPHCNKKCHQKCNLKSHIALK  101 (177)
Q Consensus        47 ~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C~~~f~~~~~l~~H~~~~  101 (177)
                      +++|.|. ||+.|....+|..|+++|.++++ |.|.+||++|.....|..|++.|
T Consensus         1 EK~y~C~-Cgk~F~~~~~l~~H~~~Ht~ekp-y~C~~C~k~F~~~~~L~~H~r~H   53 (53)
T d2csha1           1 DKLYPCQ-CGKSFTHKSQRDRHMSMHLGLRP-YGCGVCGKKFKMKHHLVGHMKIH   53 (53)
T ss_dssp             CCCEECT-TSCEESSHHHHHHHHHHHSCCCS-EECTTTSCEESSSHHHHHHHTTT
T ss_pred             CcCCCCC-CCCeECCHHHhHHHhhccccccC-CcCCCcCCEecCHHHHHHHHhcC
Confidence            4789995 99999999999999999998855 99999999999999999999654

>d2cota2 g.37.1.1 (A:7-44) Zinc finger and SCAN domain-containing protein 16, ZSCAN16 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger and SCAN domain-containing protein 16, ZSCAN16
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.41  E-value=1.2e-14  Score=69.61  Aligned_cols=36  Identities=17%  Similarity=0.250  Sum_probs=27.2

Q ss_pred             HHHHHhhCCCCCccCCCCcccccchhHHHHHHhhhcC
Q psy16578        141 QHLKFECGVEPQFKCPYCDKRCKLKGNLMSHIALKHT  177 (177)
Q Consensus       141 ~H~~~h~~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~  177 (177)
                      +|+++|++ ++||.|.+||+.|+..++|.+|+++|+|
T Consensus         2 rH~~~Ht~-ekpy~C~~CgK~F~~~s~L~~H~r~HtG   37 (38)
T d2cota2           2 RSEWQQRE-RRRYKCDECGKSFSHSSDLSKHRRTHTG   37 (38)
T ss_dssp             CCCSCCCC-SCSSBCSSSCCBCSCHHHHHHHHTTTCC
T ss_pred             ccCcccCC-CCCEecCCCCceeeCHHHHHHhCccCCC
Confidence            36667777 5558888888888888888888888765

>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.40  E-value=1.5e-13  Score=65.50  Aligned_cols=37  Identities=24%  Similarity=0.622  Sum_probs=32.9

Q ss_pred             CCCceecCCccccccChhHHHHHHH-HhhCCCCCccCCC
Q psy16578        120 LNGSFICPKCSNRYVYKHNLKQHLK-FECGVEPQFKCPY  157 (177)
Q Consensus       120 ~~~~~~C~~C~~~f~~~~~l~~H~~-~h~~~~~~~~C~~  157 (177)
                      .++||.|..|++.|...++|..|++ +|++ ++||+|.+
T Consensus         2 ~~Kpy~C~~Cgk~F~~~~~L~~H~r~~Ht~-ekpy~C~i   39 (39)
T d2epsa1           2 VGKPYICQSCGKGFSRPDHLNGHIKQVHTS-ERPHKCQV   39 (39)
T ss_dssp             SSCCEECSSSCCEESSHHHHHHHHHHTSCC-CCCCCSSS
T ss_pred             CCCCccCCCCCCCcCChHHhhccCcCccCC-CcCcCCcC
Confidence            4789999999999999999999987 6888 77799975

>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.37  E-value=9.5e-14  Score=65.42  Aligned_cols=32  Identities=31%  Similarity=0.502  Sum_probs=19.5

Q ss_pred             HhhCCCCCccCCCCcccccchhHHHHHHhhhcC
Q psy16578        145 FECGVEPQFKCPYCDKRCKLKGNLMSHIALKHT  177 (177)
Q Consensus       145 ~h~~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~  177 (177)
                      +|+| ++||+|.+|++.|+.+++|.+|+++||+
T Consensus         2 ~HTg-ekPy~C~~C~k~F~~~~~L~~H~r~H~~   33 (36)
T d1x6ha2           2 THTG-EKPYACSHCDKTFRQKQLLDMHFKRYHD   33 (36)
T ss_dssp             TCCC-CCCEECSSSSCEESSHHHHHHHHHHTTC
T ss_pred             CCCC-CCCEECCCCCCCcCCHhHHHHhCcccCC
Confidence            4555 4446666666666666666666666653

>d1a1ia2 g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.36  E-value=1.1e-13  Score=60.90  Aligned_cols=27  Identities=22%  Similarity=0.492  Sum_probs=17.2

Q ss_pred             CCccCCCCcccccchhHHHHHHhhhcC
Q psy16578        151 PQFKCPYCDKRCKLKGNLMSHIALKHT  177 (177)
Q Consensus       151 ~~~~C~~C~~~f~~~~~l~~H~~~~h~  177 (177)
                      +||+|.+|++.|+.+++|.+|+++|+|
T Consensus         2 KPy~C~~C~k~F~~~~~L~~H~r~HTG   28 (28)
T d1a1ia2           2 KPFQCRICMRNFSRSDHLTTHIRTHTG   28 (28)
T ss_dssp             CCEECTTTCCEESCHHHHHHHHHHHHC
T ss_pred             cCccCCCCcCEecccccccccCCCccC
Confidence            446666666666666666666666654

>d1p7aa_ g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Kruppel-like factor 3, Bklf
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.35  E-value=7.6e-14  Score=66.24  Aligned_cols=34  Identities=24%  Similarity=0.416  Sum_probs=27.1

Q ss_pred             HHHHhhCCCCCccCCCCcccccchhHHHHHHhhhc
Q psy16578        142 HLKFECGVEPQFKCPYCDKRCKLKGNLMSHIALKH  176 (177)
Q Consensus       142 H~~~h~~~~~~~~C~~C~~~f~~~~~l~~H~~~~h  176 (177)
                      |.++|++ ++||+|.+|++.|+.+++|.+|+++|-
T Consensus         2 h~R~HTg-eKPy~C~~C~k~F~~~~~L~~H~r~H~   35 (37)
T d1p7aa_           2 STRGSTG-IKPFQCPDCDRSFSRSDHLALHRKRHM   35 (37)
T ss_dssp             CSSTTCC-SSSBCCTTTCCCBSSHHHHHHHHGGGT
T ss_pred             CCCccCC-ccCeEeCCCCCEecCHHHHHHHHhcCc
Confidence            5677888 566888888888888888888888773

>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.35  E-value=1e-13  Score=65.16  Aligned_cols=32  Identities=34%  Similarity=0.643  Sum_probs=23.2

Q ss_pred             HhhCCCCCccCCCCcccccchhHHHHHHhhhcC
Q psy16578        145 FECGVEPQFKCPYCDKRCKLKGNLMSHIALKHT  177 (177)
Q Consensus       145 ~h~~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~  177 (177)
                      +|+| ++||+|++|++.|+.+++|.+|++.+|+
T Consensus         2 ~HTg-ekP~~C~~C~k~F~~~~~L~~H~~~~H~   33 (36)
T d2ct1a2           2 THSG-EKPYECYICHARFTQSGTMKMHILQKHT   33 (36)
T ss_dssp             CCSC-CCSEECTTTCCEESCHHHHHHHHHHHSS
T ss_pred             ccCC-CCCEeCCCCcccccchHHHHHHcccccC
Confidence            5666 5557777777777777777777776664

>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.33  E-value=3.3e-13  Score=61.83  Aligned_cols=31  Identities=23%  Similarity=0.433  Sum_probs=16.6

Q ss_pred             hhCCCCCccCCCCcccccchhHHHHHHhhhcC
Q psy16578        146 ECGVEPQFKCPYCDKRCKLKGNLMSHIALKHT  177 (177)
Q Consensus       146 h~~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~  177 (177)
                      |++ ++||+|.+|++.|+..++|.+|+++|.|
T Consensus         2 HTg-ekpy~C~~Cgk~F~~~~~L~~H~r~Htg   32 (33)
T d1x6ea1           2 HSG-EKPYGCVECGKAFSRSSILVQHQRVHTG   32 (33)
T ss_dssp             TTT-CCCEECSSSCCEESSHHHHHHHHHGGGC
T ss_pred             cCC-CCCeeCCCCCCEeCchHHhHhhccccCC
Confidence            444 4445555555555555555555555543

>d1srka_ g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein ZFPM1 (FOG-1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.28  E-value=7.3e-13  Score=61.51  Aligned_cols=26  Identities=23%  Similarity=0.465  Sum_probs=13.8

Q ss_pred             CCCccCCCCcccccchhHHHHHHhhh
Q psy16578        150 EPQFKCPYCDKRCKLKGNLMSHIALK  175 (177)
Q Consensus       150 ~~~~~C~~C~~~f~~~~~l~~H~~~~  175 (177)
                      ++||+|.+|++.|+.+++|.+|+++|
T Consensus         5 ekPy~C~~C~k~F~~~~~L~~H~r~H   30 (35)
T d1srka_           5 KRPFVCRICLSAFTTKANCARHLKVH   30 (35)
T ss_dssp             CSCEECSSSCCEESSHHHHHHHHGGG
T ss_pred             CccccCCCCCCcccChHHHHHHcccc
Confidence            34455555555555555555555554

>d1a1ia2 g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.28  E-value=1.3e-12  Score=57.45  Aligned_cols=28  Identities=21%  Similarity=0.574  Sum_probs=26.8

Q ss_pred             CCceecCCccccccChhHHHHHHHHhhC
Q psy16578        121 NGSFICPKCSNRYVYKHNLKQHLKFECG  148 (177)
Q Consensus       121 ~~~~~C~~C~~~f~~~~~l~~H~~~h~~  148 (177)
                      |+||+|..|+++|..++.|..|+++|+|
T Consensus         1 EKPy~C~~C~k~F~~~~~L~~H~r~HTG   28 (28)
T d1a1ia2           1 QKPFQCRICMRNFSRSDHLTTHIRTHTG   28 (28)
T ss_dssp             CCCEECTTTCCEESCHHHHHHHHHHHHC
T ss_pred             CcCccCCCCcCEecccccccccCCCccC
Confidence            5899999999999999999999999986

>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.25  E-value=3.4e-12  Score=58.39  Aligned_cols=32  Identities=19%  Similarity=0.372  Sum_probs=29.7

Q ss_pred             cCCCCceecCCccccccChhHHHHHHHHhhCC
Q psy16578        118 SQLNGSFICPKCSNRYVYKHNLKQHLKFECGV  149 (177)
Q Consensus       118 ~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~  149 (177)
                      +.+++||+|..|+++|...+.|..|+++|+|+
T Consensus         2 HTgekpy~C~~Cgk~F~~~~~L~~H~r~HtgE   33 (33)
T d1x6ea1           2 HSGEKPYGCVECGKAFSRSSILVQHQRVHTGE   33 (33)
T ss_dssp             TTTCCCEECSSSCCEESSHHHHHHHHHGGGCS
T ss_pred             cCCCCCeeCCCCCCEeCchHHhHhhccccCCC
Confidence            45799999999999999999999999999983

>d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=99.23  E-value=2.4e-12  Score=57.27  Aligned_cols=26  Identities=19%  Similarity=0.428  Sum_probs=20.1

Q ss_pred             CccCCCCcccccchhHHHHHHhhhcC
Q psy16578        152 QFKCPYCDKRCKLKGNLMSHIALKHT  177 (177)
Q Consensus       152 ~~~C~~C~~~f~~~~~l~~H~~~~h~  177 (177)
                      ||+|++|++.|+..++|.+|+++|+|
T Consensus         2 p~~C~~C~k~F~~~~~L~~H~r~HTg   27 (29)
T d2adra1           2 SFVCEVCTRAFARQEHLKRHYRSHTN   27 (29)
T ss_dssp             CBCCTTTCCCBSCHHHHHHHHHTTTS
T ss_pred             cCCCCCCCCCCCCchHcccccCcccC
Confidence            57788888888888888888877765

>d1sp1a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.20  E-value=4.8e-12  Score=56.16  Aligned_cols=26  Identities=35%  Similarity=0.686  Sum_probs=19.3

Q ss_pred             CccCCCCcccccchhHHHHHHhhhcC
Q psy16578        152 QFKCPYCDKRCKLKGNLMSHIALKHT  177 (177)
Q Consensus       152 ~~~C~~C~~~f~~~~~l~~H~~~~h~  177 (177)
                      ||.|++|++.|+.+++|.+|+++|.|
T Consensus         2 py~C~~C~k~F~~~s~L~~H~r~Htg   27 (29)
T d1sp1a_           2 KFACPECPKRFMRSDHLSKHIKTHQN   27 (29)
T ss_dssp             CSCCTTTTCCCSCSHHHHHHHHGGGC
T ss_pred             CEECCcCCCeecchHHhhhhcCccCC
Confidence            57777777777777777777777764

>d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=99.18  E-value=6.7e-12  Score=55.78  Aligned_cols=28  Identities=25%  Similarity=0.629  Sum_probs=26.6

Q ss_pred             CceecCCccccccChhHHHHHHHHhhCC
Q psy16578        122 GSFICPKCSNRYVYKHNLKQHLKFECGV  149 (177)
Q Consensus       122 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~  149 (177)
                      +||.|.+|+++|...+.|.+|+++|+|+
T Consensus         1 kp~~C~~C~k~F~~~~~L~~H~r~HTgE   28 (29)
T d2adra1           1 RSFVCEVCTRAFARQEHLKRHYRSHTNE   28 (29)
T ss_dssp             CCBCCTTTCCCBSCHHHHHHHHHTTTSS
T ss_pred             CcCCCCCCCCCCCCchHcccccCcccCC
Confidence            5899999999999999999999999994

>d1x6ea2 g.37.1.1 (A:41-66) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.18  E-value=3.8e-12  Score=54.48  Aligned_cols=24  Identities=25%  Similarity=0.589  Sum_probs=14.4

Q ss_pred             CccCCCCcccccchhHHHHHHhhh
Q psy16578        152 QFKCPYCDKRCKLKGNLMSHIALK  175 (177)
Q Consensus       152 ~~~C~~C~~~f~~~~~l~~H~~~~  175 (177)
                      ||+|.+||+.|+.+++|.+|+|+|
T Consensus         2 Py~C~eCgK~F~~~s~L~~HqriH   25 (26)
T d1x6ea2           2 PYKCLECGKAFSQNSGLINHQRIH   25 (26)
T ss_dssp             CEECSSSCCEESSHHHHHHHHHHH
T ss_pred             CccCCCCcCeeccCcccccCccCC
Confidence            456666666666666666666655

>d2cota2 g.37.1.1 (A:7-44) Zinc finger and SCAN domain-containing protein 16, ZSCAN16 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger and SCAN domain-containing protein 16, ZSCAN16
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.17  E-value=9.5e-12  Score=59.22  Aligned_cols=34  Identities=15%  Similarity=0.424  Sum_probs=31.0

Q ss_pred             cccCCCCceecCCccccccChhHHHHHHHHhhCC
Q psy16578        116 RNSQLNGSFICPKCSNRYVYKHNLKQHLKFECGV  149 (177)
Q Consensus       116 ~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~  149 (177)
                      ..+.+++||.|..|+++|...+.|..|+++|+|+
T Consensus         5 ~~Ht~ekpy~C~~CgK~F~~~s~L~~H~r~HtGE   38 (38)
T d2cota2           5 WQQRERRRYKCDECGKSFSHSSDLSKHRRTHTGE   38 (38)
T ss_dssp             SCCCCSCSSBCSSSCCBCSCHHHHHHHHTTTCCS
T ss_pred             cccCCCCCEecCCCCceeeCHHHHHHhCccCCCC
Confidence            4566899999999999999999999999999984

>d1sp1a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.17  E-value=1e-11  Score=55.08  Aligned_cols=28  Identities=29%  Similarity=0.733  Sum_probs=26.6

Q ss_pred             CceecCCccccccChhHHHHHHHHhhCC
Q psy16578        122 GSFICPKCSNRYVYKHNLKQHLKFECGV  149 (177)
Q Consensus       122 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~  149 (177)
                      +||.|..|+++|..++.|..|+++|+++
T Consensus         1 Kpy~C~~C~k~F~~~s~L~~H~r~Htge   28 (29)
T d1sp1a_           1 KKFACPECPKRFMRSDHLSKHIKTHQNK   28 (29)
T ss_dssp             CCSCCTTTTCCCSCSHHHHHHHHGGGCC
T ss_pred             CCEECCcCCCeecchHHhhhhcCccCCc
Confidence            5899999999999999999999999994

>d1srka_ g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein ZFPM1 (FOG-1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.15  E-value=1.6e-11  Score=56.85  Aligned_cols=30  Identities=27%  Similarity=0.518  Sum_probs=28.5

Q ss_pred             CCCCceecCCccccccChhHHHHHHHHhhC
Q psy16578        119 QLNGSFICPKCSNRYVYKHNLKQHLKFECG  148 (177)
Q Consensus       119 ~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~  148 (177)
                      .+++||.|..|++.|..+++|..|+++|+.
T Consensus         3 TGekPy~C~~C~k~F~~~~~L~~H~r~Ht~   32 (35)
T d1srka_           3 SGKRPFVCRICLSAFTTKANCARHLKVHTD   32 (35)
T ss_dssp             SCCSCEECSSSCCEESSHHHHHHHHGGGTS
T ss_pred             CCCccccCCCCCCcccChHHHHHHccccCC
Confidence            579999999999999999999999999976

>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.14  E-value=2.2e-11  Score=57.12  Aligned_cols=32  Identities=19%  Similarity=0.375  Sum_probs=29.7

Q ss_pred             ccCCCCceecCCccccccChhHHHHHHHHhhC
Q psy16578        117 NSQLNGSFICPKCSNRYVYKHNLKQHLKFECG  148 (177)
Q Consensus       117 ~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~  148 (177)
                      .+.+++||.|..|+++|...+.|..|+++|++
T Consensus         2 ~HTgekPy~C~~C~k~F~~~~~L~~H~r~H~~   33 (36)
T d1x6ha2           2 THTGEKPYACSHCDKTFRQKQLLDMHFKRYHD   33 (36)
T ss_dssp             TCCCCCCEECSSSSCEESSHHHHHHHHHHTTC
T ss_pred             CCCCCCCEECCCCCCCcCCHhHHHHhCcccCC
Confidence            35689999999999999999999999999987

>d2dlka2 g.37.1.1 (A:38-73) Zinc finger protein 692, ZNF692 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 692, ZNF692
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.14  E-value=2.3e-11  Score=56.78  Aligned_cols=33  Identities=30%  Similarity=0.944  Sum_probs=29.6

Q ss_pred             eecCC--ccccccChhHHHHHHHHhhCCCCCccCCC
Q psy16578        124 FICPK--CSNRYVYKHNLKQHLKFECGVEPQFKCPY  157 (177)
Q Consensus       124 ~~C~~--C~~~f~~~~~l~~H~~~h~~~~~~~~C~~  157 (177)
                      |.|.+  |+++|..++.|.+|+++|+| ++||+|+.
T Consensus         2 f~C~~~~C~k~F~~~~~L~~H~r~Htg-ekpy~C~f   36 (36)
T d2dlka2           2 FSCPEPACGKSFNFKKHLKEHMKLHSD-TRDYICEF   36 (36)
T ss_dssp             EECSCTTTCCEESSHHHHHHHHHHHHT-SCCCSCCS
T ss_pred             eECCCCCCCCeeCChhHhccccCeeCC-CCCEeCCC
Confidence            78876  99999999999999999999 66699974

>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.14  E-value=2.1e-11  Score=57.94  Aligned_cols=36  Identities=25%  Similarity=0.579  Sum_probs=30.5

Q ss_pred             CCccccCccchhccChHHHHHHHHH-HhCCCCceeCCC
Q psy16578         47 EDVFACPKCSKTYLRQYTLNAHLRY-ECGKRPKFKCPH   83 (177)
Q Consensus        47 ~~~~~C~~C~~~f~~~~~l~~H~~~-h~~~~~~~~C~~   83 (177)
                      ++||.|.+||+.|....+|..|++. |.++ +||.|.+
T Consensus         3 ~Kpy~C~~Cgk~F~~~~~L~~H~r~~Ht~e-kpy~C~i   39 (39)
T d2epsa1           3 GKPYICQSCGKGFSRPDHLNGHIKQVHTSE-RPHKCQV   39 (39)
T ss_dssp             SCCEECSSSCCEESSHHHHHHHHHHTSCCC-CCCCSSS
T ss_pred             CCCccCCCCCCCcCChHHhhccCcCccCCC-cCcCCcC
Confidence            5789999999999999999999875 6666 5599974

>d1x6ea2 g.37.1.1 (A:41-66) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.13  E-value=2e-11  Score=52.23  Aligned_cols=26  Identities=15%  Similarity=0.498  Sum_probs=24.8

Q ss_pred             CceecCCccccccChhHHHHHHHHhh
Q psy16578        122 GSFICPKCSNRYVYKHNLKQHLKFEC  147 (177)
Q Consensus       122 ~~~~C~~C~~~f~~~~~l~~H~~~h~  147 (177)
                      +||+|..||++|..++.|..|+++|+
T Consensus         1 KPy~C~eCgK~F~~~s~L~~HqriHT   26 (26)
T d1x6ea2           1 KPYKCLECGKAFSQNSGLINHQRIHT   26 (26)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHHHHH
T ss_pred             CCccCCCCcCeeccCcccccCccCCC
Confidence            68999999999999999999999995

>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.07  E-value=7e-11  Score=55.27  Aligned_cols=34  Identities=15%  Similarity=0.298  Sum_probs=29.7

Q ss_pred             ccCCCCceecCCccccccChhHHHHHHHHhhCCC
Q psy16578        117 NSQLNGSFICPKCSNRYVYKHNLKQHLKFECGVE  150 (177)
Q Consensus       117 ~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~  150 (177)
                      .+.+++||.|.+|++.|..+++|..|++.+++++
T Consensus         2 ~HTgekP~~C~~C~k~F~~~~~L~~H~~~~H~~~   35 (36)
T d2ct1a2           2 THSGEKPYECYICHARFTQSGTMKMHILQKHTEN   35 (36)
T ss_dssp             CCSCCCSEECTTTCCEESCHHHHHHHHHHHSSSS
T ss_pred             ccCCCCCEeCCCCcccccchHHHHHHcccccCCC
Confidence            3568999999999999999999999998777643

>d2glia3 g.37.1.1 (A:168-197) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.06  E-value=4e-11  Score=53.42  Aligned_cols=26  Identities=27%  Similarity=0.533  Sum_probs=19.1

Q ss_pred             CccCCC--CcccccchhHHHHHHhhhcC
Q psy16578        152 QFKCPY--CDKRCKLKGNLMSHIALKHT  177 (177)
Q Consensus       152 ~~~C~~--C~~~f~~~~~l~~H~~~~h~  177 (177)
                      ||.|++  |++.|+.+++|++|+++|.|
T Consensus         2 p~~C~~~gCgk~F~~~~~L~~H~r~HtG   29 (30)
T d2glia3           2 PHKCTFEGCRKSYSRLENLKTHLRSHTG   29 (30)
T ss_dssp             CCCCCSTTCCCCCSSHHHHHHHHHHTTT
T ss_pred             CeeCCCCCCCceECChhHhhhhcCcCcC
Confidence            577777  77777777777777777765

>d1ncsa_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.04  E-value=3.2e-12  Score=63.67  Aligned_cols=31  Identities=16%  Similarity=0.443  Sum_probs=17.0

Q ss_pred             cCCCCceecCC--ccccccChhHHHHHHHHhhC
Q psy16578        118 SQLNGSFICPK--CSNRYVYKHNLKQHLKFECG  148 (177)
Q Consensus       118 ~~~~~~~~C~~--C~~~f~~~~~l~~H~~~h~~  148 (177)
                      +.+++||.|.+  |+++|...+.|..|+++|+|
T Consensus        13 h~gekpy~C~~~~C~k~F~~~~~L~~H~r~Htg   45 (47)
T d1ncsa_          13 EMPDKTFECLFPGCTKTFKRRYNIRSHIQTHLE   45 (47)
T ss_dssp             EETTTEEECCCTTCCCEECSSSSHHHHHHHHTT
T ss_pred             ccCCCCeECCcCCCCccccCchHHHhhcccccC
Confidence            44555555544  55555555555555555555

>d1ubdc3 g.37.1.1 (C:351-380) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.03  E-value=4.7e-11  Score=53.30  Aligned_cols=26  Identities=35%  Similarity=0.784  Sum_probs=16.3

Q ss_pred             CccCCC--CcccccchhHHHHHHhhhcC
Q psy16578        152 QFKCPY--CDKRCKLKGNLMSHIALKHT  177 (177)
Q Consensus       152 ~~~C~~--C~~~f~~~~~l~~H~~~~h~  177 (177)
                      ||.|++  |++.|+.+++|.+|+++|+|
T Consensus         2 p~~C~~~gCgk~F~~~~~L~~H~r~HTG   29 (30)
T d1ubdc3           2 PFQCTFEGCGKRFSLDFNLRTHVRIHTG   29 (30)
T ss_dssp             CEECCSTTCCCEESCHHHHHHHHHHHHC
T ss_pred             CccCCCCCCCceECcHHHcCccccccCC
Confidence            466655  66666666666666666654

>d1p7aa_ g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Kruppel-like factor 3, Bklf
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.02  E-value=1.2e-10  Score=54.96  Aligned_cols=33  Identities=27%  Similarity=0.416  Sum_probs=29.8

Q ss_pred             cccCCCCceecCCccccccChhHHHHHHHHhhC
Q psy16578        116 RNSQLNGSFICPKCSNRYVYKHNLKQHLKFECG  148 (177)
Q Consensus       116 ~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~  148 (177)
                      ..+.+++||.|..|+++|..++.|..|+++|.+
T Consensus         4 R~HTgeKPy~C~~C~k~F~~~~~L~~H~r~H~~   36 (37)
T d1p7aa_           4 RGSTGIKPFQCPDCDRSFSRSDHLALHRKRHML   36 (37)
T ss_dssp             STTCCSSSBCCTTTCCCBSSHHHHHHHHGGGTC
T ss_pred             CccCCccCeEeCCCCCEecCHHHHHHHHhcCcC
Confidence            456689999999999999999999999999964

>d1ubdc3 g.37.1.1 (C:351-380) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.99  E-value=1.8e-10  Score=51.35  Aligned_cols=28  Identities=29%  Similarity=0.717  Sum_probs=26.0

Q ss_pred             CceecCC--ccccccChhHHHHHHHHhhCC
Q psy16578        122 GSFICPK--CSNRYVYKHNLKQHLKFECGV  149 (177)
Q Consensus       122 ~~~~C~~--C~~~f~~~~~l~~H~~~h~~~  149 (177)
                      +||.|.+  |+++|...+.|..|+++|+|+
T Consensus         1 kp~~C~~~gCgk~F~~~~~L~~H~r~HTGE   30 (30)
T d1ubdc3           1 KPFQCTFEGCGKRFSLDFNLRTHVRIHTGD   30 (30)
T ss_dssp             CCEECCSTTCCCEESCHHHHHHHHHHHHCC
T ss_pred             CCccCCCCCCCceECcHHHcCccccccCCC
Confidence            5899977  999999999999999999983

>d2glia3 g.37.1.1 (A:168-197) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.99  E-value=1.6e-10  Score=51.40  Aligned_cols=28  Identities=32%  Similarity=0.549  Sum_probs=26.1

Q ss_pred             CceecCC--ccccccChhHHHHHHHHhhCC
Q psy16578        122 GSFICPK--CSNRYVYKHNLKQHLKFECGV  149 (177)
Q Consensus       122 ~~~~C~~--C~~~f~~~~~l~~H~~~h~~~  149 (177)
                      +||.|.+  |+++|...+.|..|+++|+|+
T Consensus         1 kp~~C~~~gCgk~F~~~~~L~~H~r~HtGE   30 (30)
T d2glia3           1 KPHKCTFEGCRKSYSRLENLKTHLRSHTGE   30 (30)
T ss_dssp             CCCCCCSTTCCCCCSSHHHHHHHHHHTTTC
T ss_pred             CCeeCCCCCCCceECChhHhhhhcCcCcCC
Confidence            5899988  999999999999999999983

>d1a1ia1 g.37.1.1 (A:103-131) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.98  E-value=8.2e-11  Score=51.92  Aligned_cols=26  Identities=31%  Similarity=0.777  Sum_probs=18.0

Q ss_pred             CccCCC--CcccccchhHHHHHHhhhcC
Q psy16578        152 QFKCPY--CDKRCKLKGNLMSHIALKHT  177 (177)
Q Consensus       152 ~~~C~~--C~~~f~~~~~l~~H~~~~h~  177 (177)
                      ||+|++  |++.|+..++|.+|+++|.|
T Consensus         2 p~~C~~~gC~k~F~~~~~L~~H~r~HtG   29 (29)
T d1a1ia1           2 PYACPVESCDRRFSRSADLTRHIRIHTG   29 (29)
T ss_dssp             CEECCSTTCCCEESSHHHHHHHTHHHHT
T ss_pred             CeECCCCCCCcEECchhHhhhhcCccCC
Confidence            467766  77777777777777777654

>d1sp2a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.93  E-value=2.9e-10  Score=51.12  Aligned_cols=26  Identities=27%  Similarity=0.549  Sum_probs=18.5

Q ss_pred             CccCCC--CcccccchhHHHHHHhhhcC
Q psy16578        152 QFKCPY--CDKRCKLKGNLMSHIALKHT  177 (177)
Q Consensus       152 ~~~C~~--C~~~f~~~~~l~~H~~~~h~  177 (177)
                      ||.|++  |++.|+..++|.+|+++|.|
T Consensus         2 pf~C~~~~C~k~F~~~~~L~~H~r~Htg   29 (31)
T d1sp2a_           2 PFMCTWSYCGKRFTRSDELQRHKRTHTG   29 (31)
T ss_dssp             CCBCCSTTCCCBCSSHHHHHHHHTTTSC
T ss_pred             cCCCcCCCCCcCcCChhHhhhhcCcccc
Confidence            577753  77777777777777777764

>d1zfda_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.91  E-value=4.6e-10  Score=50.67  Aligned_cols=26  Identities=23%  Similarity=0.487  Sum_probs=15.1

Q ss_pred             CCccCCC--CcccccchhHHHHHHhhhc
Q psy16578        151 PQFKCPY--CDKRCKLKGNLMSHIALKH  176 (177)
Q Consensus       151 ~~~~C~~--C~~~f~~~~~l~~H~~~~h  176 (177)
                      +||.|++  |++.|+..++|.+|+++|.
T Consensus         2 rP~~C~~pgC~k~F~r~~~L~~H~r~Ht   29 (32)
T d1zfda_           2 RPYSCDHPGCDKAFVRNHDLIRHKKSHQ   29 (32)
T ss_dssp             CSBCCCCTTCCCCBSSSHHHHHHHGGGT
T ss_pred             cCeECcCCCCCCeeCCHHHHHHHhhhcc
Confidence            3466655  6666666666666665553

>d2dmda2 g.37.1.1 (A:8-33) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.89  E-value=4.7e-10  Score=45.50  Aligned_cols=26  Identities=27%  Similarity=0.466  Sum_probs=22.4

Q ss_pred             CccCCCCcccccchhHHHHHHhhhcC
Q psy16578        152 QFKCPYCDKRCKLKGNLMSHIALKHT  177 (177)
Q Consensus       152 ~~~C~~C~~~f~~~~~l~~H~~~~h~  177 (177)
                      |.+|+.|++.|+++..|..|||.|+|
T Consensus         1 phkc~~c~kcfsrkdklk~hmr~htg   26 (26)
T d2dmda2           1 PHKCEVCGKCFSRKDKLKTHMRCHTG   26 (26)
T ss_dssp             CCCBTTTTBCCCCHHHHHHHGGGCCC
T ss_pred             CCccchhhhHhcchhHHHHHhhccCC
Confidence            46889999999999999999998876

>d1ncsa_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.89  E-value=5.5e-10  Score=55.38  Aligned_cols=39  Identities=28%  Similarity=0.517  Sum_probs=33.0

Q ss_pred             hHHHHHHHHhhCCCCCccCCC--CcccccchhHHHHHHhhhcC
Q psy16578        137 HNLKQHLKFECGVEPQFKCPY--CDKRCKLKGNLMSHIALKHT  177 (177)
Q Consensus       137 ~~l~~H~~~h~~~~~~~~C~~--C~~~f~~~~~l~~H~~~~h~  177 (177)
                      ..|..|+. |++ +++|.|.+  |++.|+..++|.+|+++|.|
T Consensus         5 ~~l~~h~~-h~g-ekpy~C~~~~C~k~F~~~~~L~~H~r~Htg   45 (47)
T d1ncsa_           5 GSIDKYVK-EMP-DKTFECLFPGCTKTFKRRYNIRSHIQTHLE   45 (47)
T ss_dssp             SSGGGSCE-EET-TTEEECCCTTCCCEECSSSSHHHHHHHHTT
T ss_pred             chhcchhh-ccC-CCCeECCcCCCCccccCchHHHhhcccccC
Confidence            34556664 888 67799988  99999999999999999986

>d1ubdc4 g.37.1.1 (C:381-408) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.88  E-value=2.9e-10  Score=49.56  Aligned_cols=25  Identities=36%  Similarity=0.788  Sum_probs=18.4

Q ss_pred             CccCCC--CcccccchhHHHHHHhhhc
Q psy16578        152 QFKCPY--CDKRCKLKGNLMSHIALKH  176 (177)
Q Consensus       152 ~~~C~~--C~~~f~~~~~l~~H~~~~h  176 (177)
                      ||.|++  |++.|+..++|++|+++|+
T Consensus         2 Pf~C~~~gC~K~F~~~~~L~~H~r~HT   28 (28)
T d1ubdc4           2 PYVCPFDGCNKKFAQSTNLKSHILTHA   28 (28)
T ss_dssp             CCCCCSTTCCCCCSSTTTTHHHHHHHC
T ss_pred             CcCCCCCCcCCcCCCHHHHHHHHhhcc
Confidence            577777  7777777777777777763

>d1sp2a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.84  E-value=9.3e-10  Score=49.41  Aligned_cols=28  Identities=25%  Similarity=0.673  Sum_probs=25.6

Q ss_pred             CceecC--CccccccChhHHHHHHHHhhCC
Q psy16578        122 GSFICP--KCSNRYVYKHNLKQHLKFECGV  149 (177)
Q Consensus       122 ~~~~C~--~C~~~f~~~~~l~~H~~~h~~~  149 (177)
                      +||.|+  .|+++|...++|..|+++|+|+
T Consensus         1 kpf~C~~~~C~k~F~~~~~L~~H~r~Htge   30 (31)
T d1sp2a_           1 RPFMCTWSYCGKRFTRSDELQRHKRTHTGE   30 (31)
T ss_dssp             CCCBCCSTTCCCBCSSHHHHHHHHTTTSCC
T ss_pred             CcCCCcCCCCCcCcCChhHhhhhcCccccc
Confidence            589995  5999999999999999999984

>d1a1ia1 g.37.1.1 (A:103-131) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.82  E-value=1.1e-09  Score=48.26  Aligned_cols=27  Identities=26%  Similarity=0.821  Sum_probs=25.2

Q ss_pred             CceecCC--ccccccChhHHHHHHHHhhC
Q psy16578        122 GSFICPK--CSNRYVYKHNLKQHLKFECG  148 (177)
Q Consensus       122 ~~~~C~~--C~~~f~~~~~l~~H~~~h~~  148 (177)
                      +||.|.+  |+++|...+.|..|+++|+|
T Consensus         1 Kp~~C~~~gC~k~F~~~~~L~~H~r~HtG   29 (29)
T d1a1ia1           1 RPYACPVESCDRRFSRSADLTRHIRIHTG   29 (29)
T ss_dssp             CCEECCSTTCCCEESSHHHHHHHTHHHHT
T ss_pred             CCeECCCCCCCcEECchhHhhhhcCccCC
Confidence            5899977  99999999999999999986

>d2dlka2 g.37.1.1 (A:38-73) Zinc finger protein 692, ZNF692 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 692, ZNF692
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.78  E-value=2.3e-09  Score=49.83  Aligned_cols=33  Identities=27%  Similarity=0.787  Sum_probs=29.3

Q ss_pred             cccCc--cchhccChHHHHHHHHHHhCCCCceeCCC
Q psy16578         50 FACPK--CSKTYLRQYTLNAHLRYECGKRPKFKCPH   83 (177)
Q Consensus        50 ~~C~~--C~~~f~~~~~l~~H~~~h~~~~~~~~C~~   83 (177)
                      |.|.+  |++.|.+...|+.|+++|.++++ |.|..
T Consensus         2 f~C~~~~C~k~F~~~~~L~~H~r~Htgekp-y~C~f   36 (36)
T d2dlka2           2 FSCPEPACGKSFNFKKHLKEHMKLHSDTRD-YICEF   36 (36)
T ss_dssp             EECSCTTTCCEESSHHHHHHHHHHHHTSCC-CSCCS
T ss_pred             eECCCCCCCCeeCChhHhccccCeeCCCCC-EeCCC
Confidence            67877  99999999999999999998866 99963

>d1zfda_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.77  E-value=2.4e-09  Score=48.26  Aligned_cols=28  Identities=25%  Similarity=0.585  Sum_probs=26.0

Q ss_pred             CCceecCC--ccccccChhHHHHHHHHhhC
Q psy16578        121 NGSFICPK--CSNRYVYKHNLKQHLKFECG  148 (177)
Q Consensus       121 ~~~~~C~~--C~~~f~~~~~l~~H~~~h~~  148 (177)
                      ++||.|.+  |+++|...++|.+|+++|+.
T Consensus         1 ErP~~C~~pgC~k~F~r~~~L~~H~r~Ht~   30 (32)
T d1zfda_           1 DRPYSCDHPGCDKAFVRNHDLIRHKKSHQE   30 (32)
T ss_dssp             CCSBCCCCTTCCCCBSSSHHHHHHHGGGTC
T ss_pred             CcCeECcCCCCCCeeCCHHHHHHHhhhccC
Confidence            57999987  99999999999999999976

>d1a1ia3 g.37.1.1 (A:160-187) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.76  E-value=2.1e-09  Score=45.02  Aligned_cols=26  Identities=19%  Similarity=0.498  Sum_probs=20.6

Q ss_pred             CCCccCCCCcccccchhHHHHHHhhh
Q psy16578        150 EPQFKCPYCDKRCKLKGNLMSHIALK  175 (177)
Q Consensus       150 ~~~~~C~~C~~~f~~~~~l~~H~~~~  175 (177)
                      ++||.|++||+.|+.+....+|.++|
T Consensus         1 EkPf~C~~CgrkFArsderkRH~kiH   26 (28)
T d1a1ia3           1 EKPFACDICGRKFARSDERKRHTKIH   26 (28)
T ss_dssp             CCCEECTTTCCEESSHHHHHHHHGGG
T ss_pred             CCCcccchhhhhhhcchhhhhhhhhc
Confidence            35688888888888888888888776

>d1ubdc4 g.37.1.1 (C:381-408) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.68  E-value=3.2e-09  Score=46.14  Aligned_cols=26  Identities=27%  Similarity=0.759  Sum_probs=24.1

Q ss_pred             CceecCC--ccccccChhHHHHHHHHhh
Q psy16578        122 GSFICPK--CSNRYVYKHNLKQHLKFEC  147 (177)
Q Consensus       122 ~~~~C~~--C~~~f~~~~~l~~H~~~h~  147 (177)
                      +||.|.+  |+++|...++|..|+++|+
T Consensus         1 rPf~C~~~gC~K~F~~~~~L~~H~r~HT   28 (28)
T d1ubdc4           1 RPYVCPFDGCNKKFAQSTNLKSHILTHA   28 (28)
T ss_dssp             CCCCCCSTTCCCCCSSTTTTHHHHHHHC
T ss_pred             CCcCCCCCCcCCcCCCHHHHHHHHhhcc
Confidence            5899977  9999999999999999985

>d2dmda3 g.37.1.1 (A:62-90) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.65  E-value=6.5e-09  Score=43.17  Aligned_cols=27  Identities=22%  Similarity=0.452  Sum_probs=20.3

Q ss_pred             CCccCCCCcccccchhHHHHHHhhhcC
Q psy16578        151 PQFKCPYCDKRCKLKGNLMSHIALKHT  177 (177)
Q Consensus       151 ~~~~C~~C~~~f~~~~~l~~H~~~~h~  177 (177)
                      +||+|..|.+...+++.|..|+|.|+|
T Consensus         2 rpfkcqlcsy~srnssqltvhlr~htg   28 (29)
T d2dmda3           2 RPFKCQICPYASRNSSQLTVHLRSHTG   28 (29)
T ss_dssp             CCEECSSSSCEESSHHHHHHHHTTCCS
T ss_pred             CcceeeecccccCCchheEEeeecccC
Confidence            457777777777777777777777765

>d2epqa1 g.37.1.1 (A:380-411) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.57  E-value=1.5e-08  Score=42.98  Aligned_cols=24  Identities=29%  Similarity=0.660  Sum_probs=11.9

Q ss_pred             CccCCCCcccccchhHHHHHHhhh
Q psy16578        152 QFKCPYCDKRCKLKGNLMSHIALK  175 (177)
Q Consensus       152 ~~~C~~C~~~f~~~~~l~~H~~~~  175 (177)
                      ||.|++|+..|..+.-+.-|.|.|
T Consensus         3 p~~cpic~qrfkrkdrmsyhvrsh   26 (32)
T d2epqa1           3 PYSCPVCGLRFKRKDRMSYHVRSH   26 (32)
T ss_dssp             SSEETTTTEECSCHHHHHHHHHHH
T ss_pred             CcccchHHHHhhccccceEeeecc
Confidence            355555555555555555554444

>d1klra_ g.37.1.1 (A:) ZFY {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZFY
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.53  E-value=3.2e-08  Score=41.51  Aligned_cols=27  Identities=37%  Similarity=0.787  Sum_probs=23.9

Q ss_pred             CCccCCCCcccccchhHHHHHHhhhcC
Q psy16578        151 PQFKCPYCDKRCKLKGNLMSHIALKHT  177 (177)
Q Consensus       151 ~~~~C~~C~~~f~~~~~l~~H~~~~h~  177 (177)
                      +||+|.+|.+..+.+++|..|+++.|+
T Consensus         1 kpy~cqyc~yrsadssnlkthiktkhs   27 (30)
T d1klra_           1 KTYQCQYCEFRSADSSNLKTHIKTKHS   27 (30)
T ss_dssp             CCCCCSSSSCCCSCSHHHHHHHHHHTS
T ss_pred             CCccccccccccccchhhhhhhhcccc
Confidence            369999999999999999999998875

>d2dmda2 g.37.1.1 (A:8-33) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.49  E-value=2.9e-08  Score=40.15  Aligned_cols=26  Identities=27%  Similarity=0.630  Sum_probs=24.0

Q ss_pred             ceecCCccccccChhHHHHHHHHhhC
Q psy16578        123 SFICPKCSNRYVYKHNLKQHLKFECG  148 (177)
Q Consensus       123 ~~~C~~C~~~f~~~~~l~~H~~~h~~  148 (177)
                      |.+|..|++.|..++.|.-||+.|+|
T Consensus         1 phkc~~c~kcfsrkdklk~hmr~htg   26 (26)
T d2dmda2           1 PHKCEVCGKCFSRKDKLKTHMRCHTG   26 (26)
T ss_dssp             CCCBTTTTBCCCCHHHHHHHGGGCCC
T ss_pred             CCccchhhhHhcchhHHHHHhhccCC
Confidence            46899999999999999999999975

>d1a1ia3 g.37.1.1 (A:160-187) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.45  E-value=7.6e-08  Score=40.22  Aligned_cols=27  Identities=22%  Similarity=0.557  Sum_probs=25.1

Q ss_pred             CCceecCCccccccChhHHHHHHHHhh
Q psy16578        121 NGSFICPKCSNRYVYKHNLKQHLKFEC  147 (177)
Q Consensus       121 ~~~~~C~~C~~~f~~~~~l~~H~~~h~  147 (177)
                      ++||.|..|++.|..+....+|.++|.
T Consensus         1 EkPf~C~~CgrkFArsderkRH~kiH~   27 (28)
T d1a1ia3           1 EKPFACDICGRKFARSDERKRHTKIHL   27 (28)
T ss_dssp             CCCEECTTTCCEESSHHHHHHHHGGGC
T ss_pred             CCCcccchhhhhhhcchhhhhhhhhcc
Confidence            589999999999999999999999884

>d2epqa1 g.37.1.1 (A:380-411) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.40  E-value=1.2e-07  Score=40.13  Aligned_cols=29  Identities=24%  Similarity=0.595  Sum_probs=26.9

Q ss_pred             CCceecCCccccccChhHHHHHHHHhhCC
Q psy16578        121 NGSFICPKCSNRYVYKHNLKQHLKFECGV  149 (177)
Q Consensus       121 ~~~~~C~~C~~~f~~~~~l~~H~~~h~~~  149 (177)
                      ++||.|+.|..+|+.++.+.-|.+.|.|.
T Consensus         1 ekp~~cpic~qrfkrkdrmsyhvrshdg~   29 (32)
T d2epqa1           1 EKPYSCPVCGLRFKRKDRMSYHVRSHDGS   29 (32)
T ss_dssp             CCSSEETTTTEECSCHHHHHHHHHHHSCC
T ss_pred             CCCcccchHHHHhhccccceEeeecccCc
Confidence            58999999999999999999999999773

>d2dmda3 g.37.1.1 (A:62-90) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.33  E-value=1.7e-07  Score=38.84  Aligned_cols=28  Identities=25%  Similarity=0.460  Sum_probs=26.3

Q ss_pred             CCceecCCccccccChhHHHHHHHHhhC
Q psy16578        121 NGSFICPKCSNRYVYKHNLKQHLKFECG  148 (177)
Q Consensus       121 ~~~~~C~~C~~~f~~~~~l~~H~~~h~~  148 (177)
                      ++||+|..|...-.+.+.|..|++.|+|
T Consensus         1 erpfkcqlcsy~srnssqltvhlr~htg   28 (29)
T d2dmda3           1 ERPFKCQICPYASRNSSQLTVHLRSHTG   28 (29)
T ss_dssp             CCCEECSSSSCEESSHHHHHHHHTTCCS
T ss_pred             CCcceeeecccccCCchheEEeeecccC
Confidence            4799999999999999999999999987

>d2glia5 g.37.1.1 (A:229-257) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.29  E-value=2e-07  Score=39.54  Aligned_cols=25  Identities=28%  Similarity=0.574  Sum_probs=12.7

Q ss_pred             ccCCC--CcccccchhHHHHHHhhhcC
Q psy16578        153 FKCPY--CDKRCKLKGNLMSHIALKHT  177 (177)
Q Consensus       153 ~~C~~--C~~~f~~~~~l~~H~~~~h~  177 (177)
                      |.|.+  |++.+...++|+.|++.+||
T Consensus         3 Y~Ck~~gC~K~YtdPSSLRKH~k~~HG   29 (29)
T d2glia5           3 YVCKLPGCTKRYTDPSSLRKHVKTVHG   29 (29)
T ss_dssp             EECCSTTTCCEESSHHHHHHHHHHSCC
T ss_pred             eecccCCCCcccCCHHHHHHHHHhhCC
Confidence            44544  44555555555555555443

>d2glia5 g.37.1.1 (A:229-257) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.24  E-value=4.5e-07  Score=38.42  Aligned_cols=27  Identities=30%  Similarity=0.744  Sum_probs=24.3

Q ss_pred             CceecCC--ccccccChhHHHHHHHHhhC
Q psy16578        122 GSFICPK--CSNRYVYKHNLKQHLKFECG  148 (177)
Q Consensus       122 ~~~~C~~--C~~~f~~~~~l~~H~~~h~~  148 (177)
                      +||.|..  |++++...+.|++|++.+||
T Consensus         1 KPY~Ck~~gC~K~YtdPSSLRKH~k~~HG   29 (29)
T d2glia5           1 KPYVCKLPGCTKRYTDPSSLRKHVKTVHG   29 (29)
T ss_dssp             CCEECCSTTTCCEESSHHHHHHHHHHSCC
T ss_pred             CCeecccCCCCcccCCHHHHHHHHHhhCC
Confidence            5899976  99999999999999998775

>d1bboa1 g.37.1.1 (A:1-28) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.24  E-value=5.7e-07  Score=37.42  Aligned_cols=25  Identities=28%  Similarity=0.588  Sum_probs=18.1

Q ss_pred             eecCCccccccChhHHHHHHHHhhC
Q psy16578        124 FICPKCSNRYVYKHNLKQHLKFECG  148 (177)
Q Consensus       124 ~~C~~C~~~f~~~~~l~~H~~~h~~  148 (177)
                      |.|.+|+..+...+.|.+|+++|++
T Consensus         2 YvC~~Cg~~C~KPSvL~KHIRsHT~   26 (28)
T d1bboa1           2 YICEECGIRAKKPSMLKKHIRTHTD   26 (28)
T ss_dssp             CBCTTTCCBCSSHHHHHHHHHHTSS
T ss_pred             ccccccCcccCCHHHHHHHHHHhcC
Confidence            6677777777777777777777766

>d1ubdc2 g.37.1.1 (C:323-350) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.15  E-value=5.4e-07  Score=37.09  Aligned_cols=25  Identities=20%  Similarity=0.319  Sum_probs=18.9

Q ss_pred             ccCCCCcccccchhHHHHHHhhhcC
Q psy16578        153 FKCPYCDKRCKLKGNLMSHIALKHT  177 (177)
Q Consensus       153 ~~C~~C~~~f~~~~~l~~H~~~~h~  177 (177)
                      ..|.+||+.|.-++.|++|+.+|+|
T Consensus         3 hvc~ecgkaf~essklkrh~lvhtg   27 (28)
T d1ubdc2           3 HVCAECGKAFVESSKLKRHQLVHTG   27 (28)
T ss_dssp             EECTTTCCEESSHHHHHHHGGGTSC
T ss_pred             chHHHHhHHHHHHHHHHHHhhcccC
Confidence            4677788888777778888777765

>d2dmda1 g.37.1.1 (A:34-61) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.15  E-value=5.8e-07  Score=36.87  Aligned_cols=26  Identities=23%  Similarity=0.524  Sum_probs=21.2

Q ss_pred             CCccCCCCcccccchhHHHHHHhhhc
Q psy16578        151 PQFKCPYCDKRCKLKGNLMSHIALKH  176 (177)
Q Consensus       151 ~~~~C~~C~~~f~~~~~l~~H~~~~h  176 (177)
                      +||+|..|++.-..+++|..|+|+|.
T Consensus         2 kp~kck~cdyaaadsssl~kh~rihs   27 (28)
T d2dmda1           2 KPYKCKTCDYAAADSSSLNKHLRIHS   27 (28)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHHHSC
T ss_pred             CCcccccccchhcchhhHhhhhhccc
Confidence            45888888888888888888888874

>d1bboa1 g.37.1.1 (A:1-28) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.14  E-value=8e-07  Score=36.97  Aligned_cols=25  Identities=28%  Similarity=0.478  Sum_probs=23.8

Q ss_pred             ccCCCCcccccchhHHHHHHhhhcC
Q psy16578        153 FKCPYCDKRCKLKGNLMSHIALKHT  177 (177)
Q Consensus       153 ~~C~~C~~~f~~~~~l~~H~~~~h~  177 (177)
                      |.|++|+..++..+-|+.|+|.|++
T Consensus         2 YvC~~Cg~~C~KPSvL~KHIRsHT~   26 (28)
T d1bboa1           2 YICEECGIRAKKPSMLKKHIRTHTD   26 (28)
T ss_dssp             CBCTTTCCBCSSHHHHHHHHHHTSS
T ss_pred             ccccccCcccCCHHHHHHHHHHhcC
Confidence            8999999999999999999999975

>d1bboa2 g.37.1.1 (A:29-57) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.13  E-value=5.5e-07  Score=37.49  Aligned_cols=23  Identities=39%  Similarity=0.859  Sum_probs=17.8

Q ss_pred             CccCCCCcccccchhHHHHHHhh
Q psy16578        152 QFKCPYCDKRCKLKGNLMSHIAL  174 (177)
Q Consensus       152 ~~~C~~C~~~f~~~~~l~~H~~~  174 (177)
                      ||.|..|.+.|..+.+|+.||+.
T Consensus         1 py~C~~CnF~FKTKGNLTKHmkS   23 (29)
T d1bboa2           1 PYHCTYCNFSFKTKGNLTKHMKS   23 (29)
T ss_dssp             CEECSSSSCEESSHHHHHHHHHS
T ss_pred             CcccceeeeeEeeccchhHhhhh
Confidence            47788888888888888888764

>d2epra1 g.37.1.1 (A:350-384) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.11  E-value=8.4e-07  Score=38.44  Aligned_cols=31  Identities=19%  Similarity=0.383  Sum_probs=26.9

Q ss_pred             CceecCCccccccChhHHHHHHHHhhCCCCCc
Q psy16578        122 GSFICPKCSNRYVYKHNLKQHLKFECGVEPQF  153 (177)
Q Consensus       122 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~  153 (177)
                      +...|..||+.|.+...|.+|...|.+ ++||
T Consensus         4 k~~~ce~cgk~frdvyhlnrhklshs~-ekpy   34 (35)
T d2epra1           4 KQVACEICGKIFRDVYHLNRHKLSHSG-EKPY   34 (35)
T ss_dssp             CSEEETTTTEEESSHHHHHHHGGGSCS-CCCC
T ss_pred             hhhhHHHHHHHHHHHHHHHhhhcccCC-CCCC
Confidence            456899999999999999999999988 5556

>d1klra_ g.37.1.1 (A:) ZFY {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZFY
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.03  E-value=3.3e-06  Score=35.24  Aligned_cols=29  Identities=31%  Similarity=0.511  Sum_probs=26.2

Q ss_pred             CceecCCccccccChhHHHHHHHHhhCCC
Q psy16578        122 GSFICPKCSNRYVYKHNLKQHLKFECGVE  150 (177)
Q Consensus       122 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~~  150 (177)
                      +||.|.+|.....+.++|..|+.+.|+.+
T Consensus         1 kpy~cqyc~yrsadssnlkthiktkhske   29 (30)
T d1klra_           1 KTYQCQYCEFRSADSSNLKTHIKTKHSKE   29 (30)
T ss_dssp             CCCCCSSSSCCCSCSHHHHHHHHHHTSSC
T ss_pred             CCccccccccccccchhhhhhhhcccccC
Confidence            58999999999999999999999987744

>d1znfa_ g.37.1.1 (A:) XFIN, third domain {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: XFIN, third domain
species: Xenopus laevis [TaxId: 8355]

Probab=98.02  E-value=1.9e-06  Score=34.33  Aligned_cols=24  Identities=25%  Similarity=0.581  Sum_probs=18.4

Q ss_pred             ccCCCCcccccchhHHHHHHhhhc
Q psy16578        153 FKCPYCDKRCKLKGNLMSHIALKH  176 (177)
Q Consensus       153 ~~C~~C~~~f~~~~~l~~H~~~~h  176 (177)
                      |+|..|...|--+++|.+|+++|-
T Consensus         1 ykcglcersfveksalsrhqrvhk   24 (26)
T d1znfa_           1 YKCGLCERSFVEKSALSRHQRVHK   24 (26)
T ss_dssp             CBCSSSCCBCSSHHHHHHHGGGTC
T ss_pred             CcccchHHHHHHHHHHHHHHHhhc
Confidence            577788888888888888877763

>d1njqa_ g.37.1.3 (A:) SUPERMAN zinc finger domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Plant C2H2 finger (QALGGH zinc finger)
domain: SUPERMAN zinc finger domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.01  E-value=1.5e-06  Score=39.68  Aligned_cols=24  Identities=17%  Similarity=0.654  Sum_probs=15.6

Q ss_pred             CccCCCCcccccchhHHHHHHhhh
Q psy16578        152 QFKCPYCDKRCKLKGNLMSHIALK  175 (177)
Q Consensus       152 ~~~C~~C~~~f~~~~~l~~H~~~~  175 (177)
                      .|.|.+|++.|.+..+|-.||+.|
T Consensus         5 ~~~C~~C~k~F~s~qALGGH~~~H   28 (37)
T d1njqa_           5 SYTCSFCKREFRSAQALGGHMNVH   28 (37)
T ss_dssp             SEECTTTCCEESSHHHHHHHHHTT
T ss_pred             ccCCCCCCCccCCcccccchHhhh
Confidence            366666666666666666666655

>d2adra2 g.37.1.1 (A:131-161) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=98.00  E-value=1.6e-06  Score=37.04  Aligned_cols=26  Identities=19%  Similarity=0.533  Sum_probs=18.1

Q ss_pred             CccCCCCcccccchhHHHHHHhhhcC
Q psy16578        152 QFKCPYCDKRCKLKGNLMSHIALKHT  177 (177)
Q Consensus       152 ~~~C~~C~~~f~~~~~l~~H~~~~h~  177 (177)
                      ||.|.+|++.|+.+.-|-+|...-|+
T Consensus         1 Pf~C~~C~R~FaRrDLlLRH~qKlH~   26 (31)
T d2adra2           1 PYPCGLCNRAFTRRDLLIRHAQKIHS   26 (31)
T ss_dssp             SEECTTTCCEESSHHHHHHHHTTTSC
T ss_pred             CcccccccchhhHHHHHHHHHHHHhc
Confidence            47777777777777777777765553

>d1bboa2 g.37.1.1 (A:29-57) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.00  E-value=2.8e-06  Score=35.29  Aligned_cols=24  Identities=29%  Similarity=0.625  Sum_probs=22.4

Q ss_pred             ceecCCccccccChhHHHHHHHHh
Q psy16578        123 SFICPKCSNRYVYKHNLKQHLKFE  146 (177)
Q Consensus       123 ~~~C~~C~~~f~~~~~l~~H~~~h  146 (177)
                      ||.|..|..+|+++.+|..||...
T Consensus         1 py~C~~CnF~FKTKGNLTKHmkSK   24 (29)
T d1bboa2           1 PYHCTYCNFSFKTKGNLTKHMKSK   24 (29)
T ss_dssp             CEECSSSSCEESSHHHHHHHHHSS
T ss_pred             CcccceeeeeEeeccchhHhhhhh
Confidence            699999999999999999999864

>d2dlqa3 g.37.1.1 (A:63-92) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.95  E-value=6.3e-06  Score=34.16  Aligned_cols=28  Identities=21%  Similarity=0.565  Sum_probs=24.0

Q ss_pred             CCceecCCccccccChhHHHHHHHHhhC
Q psy16578        121 NGSFICPKCSNRYVYKHNLKQHLKFECG  148 (177)
Q Consensus       121 ~~~~~C~~C~~~f~~~~~l~~H~~~h~~  148 (177)
                      +..|.|..|...|..+..|+.||..|+|
T Consensus         2 eqvftcs~cqe~f~rrmelr~hmvshtg   29 (30)
T d2dlqa3           2 EQVFTCSVCQETFRRRMELRLHMVSHTG   29 (30)
T ss_dssp             CCCEECSSSCCEESSHHHHHHHHHHHSS
T ss_pred             cceEEeHHHHHHHHHHHhheeeeecccC
Confidence            3458899999999999999999999887

>d2dlqa4 g.37.1.1 (A:8-34) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.90  E-value=3.8e-06  Score=33.99  Aligned_cols=24  Identities=29%  Similarity=0.422  Sum_probs=17.4

Q ss_pred             cCCCCcccccchhHHHHHHhhhcC
Q psy16578        154 KCPYCDKRCKLKGNLMSHIALKHT  177 (177)
Q Consensus       154 ~C~~C~~~f~~~~~l~~H~~~~h~  177 (177)
                      +|+.|.+.|.++..|..|.|.|+|
T Consensus         2 qcp~c~k~f~skyylkvhnr~htg   25 (27)
T d2dlqa4           2 ECPTCHKKFLSKYYLKVHNRKHTG   25 (27)
T ss_dssp             CCTTTCCCCSSHHHHHHHHHHHSS
T ss_pred             cCcchHHHHHHhHhhhhccccccC
Confidence            577777777777777777777664

>d2dmda1 g.37.1.1 (A:34-61) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.90  E-value=5.8e-06  Score=33.84  Aligned_cols=26  Identities=19%  Similarity=0.510  Sum_probs=24.5

Q ss_pred             CceecCCccccccChhHHHHHHHHhh
Q psy16578        122 GSFICPKCSNRYVYKHNLKQHLKFEC  147 (177)
Q Consensus       122 ~~~~C~~C~~~f~~~~~l~~H~~~h~  147 (177)
                      +||+|..|...-...+.|.+|+++|.
T Consensus         2 kp~kck~cdyaaadsssl~kh~rihs   27 (28)
T d2dmda1           2 KPYKCKTCDYAAADSSSLNKHLRIHS   27 (28)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHHHSC
T ss_pred             CCcccccccchhcchhhHhhhhhccc
Confidence            68999999999999999999999984

>d1ubdc2 g.37.1.1 (C:323-350) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.89  E-value=4.5e-06  Score=34.28  Aligned_cols=25  Identities=28%  Similarity=0.696  Sum_probs=23.5

Q ss_pred             eecCCccccccChhHHHHHHHHhhC
Q psy16578        124 FICPKCSNRYVYKHNLKQHLKFECG  148 (177)
Q Consensus       124 ~~C~~C~~~f~~~~~l~~H~~~h~~  148 (177)
                      ..|..|++.|...+.|.+|+..|++
T Consensus         3 hvc~ecgkaf~essklkrh~lvhtg   27 (28)
T d1ubdc2           3 HVCAECGKAFVESSKLKRHQLVHTG   27 (28)
T ss_dssp             EECTTTCCEESSHHHHHHHGGGTSC
T ss_pred             chHHHHhHHHHHHHHHHHHhhcccC
Confidence            5799999999999999999999987

>d2dlqa3 g.37.1.1 (A:63-92) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.85  E-value=7.8e-06  Score=33.87  Aligned_cols=27  Identities=33%  Similarity=0.751  Sum_probs=19.9

Q ss_pred             CccccCccchhccChHHHHHHHHHHhC
Q psy16578         48 DVFACPKCSKTYLRQYTLNAHLRYECG   74 (177)
Q Consensus        48 ~~~~C~~C~~~f~~~~~l~~H~~~h~~   74 (177)
                      ..|.|.+|...|.++-.|+.||..|.+
T Consensus         3 qvftcs~cqe~f~rrmelr~hmvshtg   29 (30)
T d2dlqa3           3 QVFTCSVCQETFRRRMELRLHMVSHTG   29 (30)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHHHHSS
T ss_pred             ceEEeHHHHHHHHHHHhheeeeecccC
Confidence            457777777777777777777777765

>d1njqa_ g.37.1.3 (A:) SUPERMAN zinc finger domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Plant C2H2 finger (QALGGH zinc finger)
domain: SUPERMAN zinc finger domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.85  E-value=5e-06  Score=37.86  Aligned_cols=28  Identities=14%  Similarity=0.468  Sum_probs=21.3

Q ss_pred             CccccCccchhccChHHHHHHHHHHhCC
Q psy16578         48 DVFACPKCSKTYLRQYTLNAHLRYECGK   75 (177)
Q Consensus        48 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~   75 (177)
                      +.|.|.+|++.|.+..+|-.||+.|...
T Consensus         4 r~~~C~~C~k~F~s~qALGGH~~~Hr~~   31 (37)
T d1njqa_           4 RSYTCSFCKREFRSAQALGGHMNVHRRD   31 (37)
T ss_dssp             SSEECTTTCCEESSHHHHHHHHHTTCCS
T ss_pred             CccCCCCCCCccCCcccccchHhhhcch
Confidence            3578888888888888888888777544

>d1x5wa2 g.37.1.1 (A:36-64) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.82  E-value=5.5e-06  Score=34.50  Aligned_cols=26  Identities=38%  Similarity=0.664  Sum_probs=19.2

Q ss_pred             CccCCCCcccccchhHHHHHHhhhcC
Q psy16578        152 QFKCPYCDKRCKLKGNLMSHIALKHT  177 (177)
Q Consensus       152 ~~~C~~C~~~f~~~~~l~~H~~~~h~  177 (177)
                      ||+|.+|.+--...++|..|++.-|+
T Consensus         2 PFkC~~CsFDtkq~SnL~kH~kk~H~   27 (29)
T d1x5wa2           2 PFKCNYCSFDTKQPSNLSKHMKKFHG   27 (29)
T ss_dssp             SEECSSSSCEESSHHHHHHHHHHHHS
T ss_pred             CcccceecccccCcchHHHHHHHHcc
Confidence            57777777777777777777776664

>d1znfa_ g.37.1.1 (A:) XFIN, third domain {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: XFIN, third domain
species: Xenopus laevis [TaxId: 8355]

Probab=97.76  E-value=8.4e-06  Score=32.41  Aligned_cols=24  Identities=25%  Similarity=0.577  Sum_probs=22.3

Q ss_pred             eecCCccccccChhHHHHHHHHhh
Q psy16578        124 FICPKCSNRYVYKHNLKQHLKFEC  147 (177)
Q Consensus       124 ~~C~~C~~~f~~~~~l~~H~~~h~  147 (177)
                      |+|..|.++|..++.|.+|++.|.
T Consensus         1 ykcglcersfveksalsrhqrvhk   24 (26)
T d1znfa_           1 YKCGLCERSFVEKSALSRHQRVHK   24 (26)
T ss_dssp             CBCSSSCCBCSSHHHHHHHGGGTC
T ss_pred             CcccchHHHHHHHHHHHHHHHhhc
Confidence            689999999999999999999884

>d2drpa2 g.37.1.1 (A:140-165) Tramtrack protein (two zinc-finger peptide) {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Tramtrack protein (two zinc-finger peptide)
species: Drosophila melanogaster [TaxId: 7227]

Probab=97.74  E-value=7.7e-06  Score=32.65  Aligned_cols=24  Identities=33%  Similarity=0.863  Sum_probs=19.9

Q ss_pred             ccCCCCcccccchhHHHHHHhhhc
Q psy16578        153 FKCPYCDKRCKLKGNLMSHIALKH  176 (177)
Q Consensus       153 ~~C~~C~~~f~~~~~l~~H~~~~h  176 (177)
                      |.|+.|-+.|.++.++..|.++-|
T Consensus         2 ypcp~cfkeftrkdnm~ahvkiih   25 (26)
T d2drpa2           2 YPCPFCFKEFTRKDNMTAHVKIIH   25 (26)
T ss_dssp             EECTTTCCEESCHHHHHHHHHHHT
T ss_pred             cCCchhhHHhccccCceEEEEEec
Confidence            778888888888888888888765

>d1x5wa1 g.37.1.1 (A:8-35) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.68  E-value=1.3e-05  Score=32.86  Aligned_cols=24  Identities=29%  Similarity=0.522  Sum_probs=20.8

Q ss_pred             CccCCCCcccccchhHHHHHHhhh
Q psy16578        152 QFKCPYCDKRCKLKGNLMSHIALK  175 (177)
Q Consensus       152 ~~~C~~C~~~f~~~~~l~~H~~~~  175 (177)
                      |-+|+.|.+.++++.+|+.|-|+|
T Consensus         2 pekc~ecsyscsskaalrvh~rih   25 (28)
T d1x5wa1           2 PEKCSECSYSCSSKAALRIHERIH   25 (28)
T ss_dssp             SEECSSSSCEESSHHHHHHHHGGG
T ss_pred             CccCcccccccCcHHHHHHhhccc
Confidence            357999999999999999999887

>d2dlqa4 g.37.1.1 (A:8-34) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.63  E-value=2.9e-05  Score=31.31  Aligned_cols=25  Identities=32%  Similarity=0.648  Sum_probs=23.4

Q ss_pred             ecCCccccccChhHHHHHHHHhhCC
Q psy16578        125 ICPKCSNRYVYKHNLKQHLKFECGV  149 (177)
Q Consensus       125 ~C~~C~~~f~~~~~l~~H~~~h~~~  149 (177)
                      .|+.|.+.|.++.-|..|-+.|+|+
T Consensus         2 qcp~c~k~f~skyylkvhnr~htge   26 (27)
T d2dlqa4           2 ECPTCHKKFLSKYYLKVHNRKHTGE   26 (27)
T ss_dssp             CCTTTCCCCSSHHHHHHHHHHHSSC
T ss_pred             cCcchHHHHHHhHhhhhccccccCC
Confidence            6999999999999999999999984

>d2csha2 g.37.1.1 (A:61-104) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.63  E-value=2.8e-05  Score=35.51  Aligned_cols=26  Identities=15%  Similarity=0.579  Sum_probs=21.0

Q ss_pred             CCCceecCCccccccChhHHHHHHHH
Q psy16578        120 LNGSFICPKCSNRYVYKHNLKQHLKF  145 (177)
Q Consensus       120 ~~~~~~C~~C~~~f~~~~~l~~H~~~  145 (177)
                      +-+||.|..|++.|.+++.+.+|...
T Consensus         2 GiKPYeC~~C~KrFMWRDSF~RH~~~   27 (44)
T d2csha2           2 GIKPYECNICAKRFMWRDSFHRHVTS   27 (44)
T ss_dssp             CCCCEECSSSCCEESCHHHHHHHHHH
T ss_pred             CCCceeccchhhhhhhHHHHHHhhhh
Confidence            45788898899888888888888653

>d2j7ja2 g.37.1.1 (A:29-57) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=97.55  E-value=2.1e-05  Score=32.48  Aligned_cols=22  Identities=41%  Similarity=0.875  Sum_probs=10.3

Q ss_pred             ccCCC--CcccccchhHHHHHHhh
Q psy16578        153 FKCPY--CDKRCKLKGNLMSHIAL  174 (177)
Q Consensus       153 ~~C~~--C~~~f~~~~~l~~H~~~  174 (177)
                      |.|+.  |++.|+..+-|++|-++
T Consensus         4 y~c~hegcdk~fs~ps~lkrhekv   27 (29)
T d2j7ja2           4 YECPHEGCDKRFSLPSRLKRHEKV   27 (29)
T ss_dssp             EECCSTTCCCEESSHHHHHHHHHH
T ss_pred             ccCCccCccccccCHHHHhhhhhc
Confidence            44443  44444444444444443

>d2epra1 g.37.1.1 (A:350-384) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.54  E-value=2e-05  Score=34.04  Aligned_cols=28  Identities=36%  Similarity=0.715  Sum_probs=19.6

Q ss_pred             cccCccchhccChHHHHHHHHHHhCCCC
Q psy16578         50 FACPKCSKTYLRQYTLNAHLRYECGKRP   77 (177)
Q Consensus        50 ~~C~~C~~~f~~~~~l~~H~~~h~~~~~   77 (177)
                      ..|.+||+.|.....|.+|...|.++++
T Consensus         6 ~~ce~cgk~frdvyhlnrhklshs~ekp   33 (35)
T d2epra1           6 VACEICGKIFRDVYHLNRHKLSHSGEKP   33 (35)
T ss_dssp             EEETTTTEEESSHHHHHHHGGGSCSCCC
T ss_pred             hhHHHHHHHHHHHHHHHhhhcccCCCCC
Confidence            4577777777777777777777766644

>d2ct1a1 g.37.1.1 (A:44-71) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.52  E-value=3.1e-05  Score=31.61  Aligned_cols=25  Identities=36%  Similarity=0.740  Sum_probs=20.9

Q ss_pred             ccCCCCcccccchhHHHHHHhhhcC
Q psy16578        153 FKCPYCDKRCKLKGNLMSHIALKHT  177 (177)
Q Consensus       153 ~~C~~C~~~f~~~~~l~~H~~~~h~  177 (177)
                      |+|+.|+...++++.|+.|++--|+
T Consensus         3 ~qcphc~tiiarksdlrvhlrnlhs   27 (28)
T d2ct1a1           3 FHCPHCDTVIARKSDLGVHLRKQHS   27 (28)
T ss_dssp             EECSSSSCEESSHHHHHHHHHHTSC
T ss_pred             ccCCcchhheeehhhhhHHhhhccc
Confidence            8888888888888888888887664

>d2dlqa1 g.37.1.1 (A:93-118) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.51  E-value=4.4e-05  Score=30.27  Aligned_cols=22  Identities=36%  Similarity=0.809  Sum_probs=15.7

Q ss_pred             ceeCCCCccccccchHHHhHHH
Q psy16578         78 KFKCPHCNKKCHQKCNLKSHIA   99 (177)
Q Consensus        78 ~~~C~~C~~~f~~~~~l~~H~~   99 (177)
                      ||+|..|...|+.+.+|+.|+-
T Consensus         2 pykcsscsqqfmqkkdlqshmi   23 (26)
T d2dlqa1           2 PYKCSSCSQQFMQKKDLQSHMI   23 (26)
T ss_dssp             SEECSSSCCEESSHHHHHHHHH
T ss_pred             CCcccHHHHHHHHHHHHHHHHH
Confidence            4777777777777777777763

>d2adra2 g.37.1.1 (A:131-161) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=97.47  E-value=3.8e-05  Score=32.66  Aligned_cols=26  Identities=23%  Similarity=0.455  Sum_probs=18.7

Q ss_pred             ceeCCCCccccccchHHHhHHHHhcC
Q psy16578         78 KFKCPHCNKKCHQKCNLKSHIALKHD  103 (177)
Q Consensus        78 ~~~C~~C~~~f~~~~~l~~H~~~~~~  103 (177)
                      ||.|.+|++.|.....|.+|....|+
T Consensus         1 Pf~C~~C~R~FaRrDLlLRH~qKlH~   26 (31)
T d2adra2           1 PYPCGLCNRAFTRRDLLIRHAQKIHS   26 (31)
T ss_dssp             SEECTTTCCEESSHHHHHHHHTTTSC
T ss_pred             CcccccccchhhHHHHHHHHHHHHhc
Confidence            47777777777777777777766555

>d1tf3a2 g.37.1.1 (A:41-70) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=97.45  E-value=3.6e-05  Score=31.92  Aligned_cols=24  Identities=25%  Similarity=0.433  Sum_probs=11.7

Q ss_pred             ccCCC--CcccccchhHHHHHHhhhc
Q psy16578        153 FKCPY--CDKRCKLKGNLMSHIALKH  176 (177)
Q Consensus       153 ~~C~~--C~~~f~~~~~l~~H~~~~h  176 (177)
                      |.|.+  |.+.|.+-..|.+|..+|.
T Consensus         3 fpc~~egc~kgf~tlhhltrhs~tht   28 (30)
T d1tf3a2           3 FPCKEEGCEKGFTSLHHLTRHSLTHT   28 (30)
T ss_dssp             EECCCSSCCCEESSTTHHHHHHHHHH
T ss_pred             cCcccccccccchhhhhhhhhhcccc
Confidence            44444  4455555555555544443

>d1x5wa2 g.37.1.1 (A:36-64) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.41  E-value=7.7e-05  Score=30.95  Aligned_cols=26  Identities=35%  Similarity=0.599  Sum_probs=15.8

Q ss_pred             ceeCCCCccccccchHHHhHHHHhcC
Q psy16578         78 KFKCPHCNKKCHQKCNLKSHIALKHD  103 (177)
Q Consensus        78 ~~~C~~C~~~f~~~~~l~~H~~~~~~  103 (177)
                      ||+|..|.......++|..|++..|+
T Consensus         2 PFkC~~CsFDtkq~SnL~kH~kk~H~   27 (29)
T d1x5wa2           2 PFKCNYCSFDTKQPSNLSKHMKKFHG   27 (29)
T ss_dssp             SEECSSSSCEESSHHHHHHHHHHHHS
T ss_pred             CcccceecccccCcchHHHHHHHHcc
Confidence            46666666666666666666655554

>d1tf3a2 g.37.1.1 (A:41-70) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=97.39  E-value=0.0001  Score=30.54  Aligned_cols=28  Identities=25%  Similarity=0.514  Sum_probs=24.4

Q ss_pred             CceecC--CccccccChhHHHHHHHHhhCC
Q psy16578        122 GSFICP--KCSNRYVYKHNLKQHLKFECGV  149 (177)
Q Consensus       122 ~~~~C~--~C~~~f~~~~~l~~H~~~h~~~  149 (177)
                      +||.|.  .|.+.|.+...|.+|-.+|+|+
T Consensus         1 ~pfpc~~egc~kgf~tlhhltrhs~thtge   30 (30)
T d1tf3a2           1 KPFPCKEEGCEKGFTSLHHLTRHSLTHTGE   30 (30)
T ss_dssp             CSEECCCSSCCCEESSTTHHHHHHHHHHTC
T ss_pred             CCcCcccccccccchhhhhhhhhhccccCC
Confidence            478885  4999999999999999999883

>d2j7ja2 g.37.1.1 (A:29-57) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=97.35  E-value=0.00012  Score=30.20  Aligned_cols=25  Identities=32%  Similarity=0.708  Sum_probs=22.3

Q ss_pred             CceecC--CccccccChhHHHHHHHHh
Q psy16578        122 GSFICP--KCSNRYVYKHNLKQHLKFE  146 (177)
Q Consensus       122 ~~~~C~--~C~~~f~~~~~l~~H~~~h  146 (177)
                      .||+|+  .|++.|...+.|.+|..+|
T Consensus         2 ~py~c~hegcdk~fs~ps~lkrhekvh   28 (29)
T d2j7ja2           2 LPYECPHEGCDKRFSLPSRLKRHEKVH   28 (29)
T ss_dssp             CCEECCSTTCCCEESSHHHHHHHHHHH
T ss_pred             CCccCCccCccccccCHHHHhhhhhcc
Confidence            479995  5999999999999999887

>d2csha2 g.37.1.1 (A:61-104) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.35  E-value=5.7e-05  Score=34.48  Aligned_cols=24  Identities=21%  Similarity=0.595  Sum_probs=21.6

Q ss_pred             CCCccCCCCcccccchhHHHHHHh
Q psy16578        150 EPQFKCPYCDKRCKLKGNLMSHIA  173 (177)
Q Consensus       150 ~~~~~C~~C~~~f~~~~~l~~H~~  173 (177)
                      -+||.|.+|++.|.-..++.+|.-
T Consensus         3 iKPYeC~~C~KrFMWRDSF~RH~~   26 (44)
T d2csha2           3 IKPYECNICAKRFMWRDSFHRHVT   26 (44)
T ss_dssp             CCCEECSSSCCEESCHHHHHHHHH
T ss_pred             CCceeccchhhhhhhHHHHHHhhh
Confidence            567999999999999999999974

>d2glia4 g.37.1.1 (A:198-228) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.32  E-value=4.8e-05  Score=32.34  Aligned_cols=26  Identities=15%  Similarity=0.526  Sum_probs=16.4

Q ss_pred             CceecCC--ccccccChhHHHHHH-HHhh
Q psy16578        122 GSFICPK--CSNRYVYKHNLKQHL-KFEC  147 (177)
Q Consensus       122 ~~~~C~~--C~~~f~~~~~l~~H~-~~h~  147 (177)
                      +||.|.+  |.+.|.+.+.-.+|+ ++|.
T Consensus         1 kPY~C~~~gC~KafsNsSDraKHqnRTHs   29 (31)
T d2glia4           1 KPYMCEHEGCSKAFSNASDRAKHQNRTHS   29 (31)
T ss_dssp             CCEECCSTTCCCEESSSSTTHHHHHHTTC
T ss_pred             CCccccCCChhhhhcchhhhhhhcccccc
Confidence            3666654  777777766666665 5553

>d2dlqa2 g.37.1.1 (A:35-62) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.28  E-value=8e-05  Score=30.25  Aligned_cols=23  Identities=43%  Similarity=0.700  Sum_probs=19.4

Q ss_pred             CccCCCCcccccchhHHHHHHhh
Q psy16578        152 QFKCPYCDKRCKLKGNLMSHIAL  174 (177)
Q Consensus       152 ~~~C~~C~~~f~~~~~l~~H~~~  174 (177)
                      ||+|..||+.+-.+.+|..|-..
T Consensus         1 pf~c~kcgkcyfrkenllehear   23 (28)
T d2dlqa2           1 PFECPKCGKCYFRKENLLEHEAR   23 (28)
T ss_dssp             SCBCTTTCCBCSSHHHHHHHHHH
T ss_pred             CCccccchhhhhhHhHHHHHHHH
Confidence            58999999999999999888653

>d1bhia_ g.37.1.1 (A:) Transactivation domain of cre-bp1/atf-2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transactivation domain of cre-bp1/atf-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.22  E-value=0.00019  Score=32.27  Aligned_cols=28  Identities=25%  Similarity=0.593  Sum_probs=22.3

Q ss_pred             CCCceec--CCccccccChhHHHHHHHHhh
Q psy16578        120 LNGSFIC--PKCSNRYVYKHNLKQHLKFEC  147 (177)
Q Consensus       120 ~~~~~~C--~~C~~~f~~~~~l~~H~~~h~  147 (177)
                      .++||.|  +-|+.+|.+...|..|...|.
T Consensus         3 ddkPF~C~~pGC~q~F~neDhL~vHk~KH~   32 (38)
T d1bhia_           3 DDKPFLCTAPGCGQRFTNEDHLAVHKHKHE   32 (38)
T ss_dssp             TCCCEECCCTTTCCEESSHHHHHHHHHHHH
T ss_pred             CCCceecCCCCccccccchHHHHHhhhhhe
Confidence            3688888  568888888888888887774

>d2dlqa1 g.37.1.1 (A:93-118) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.22  E-value=0.00011  Score=29.10  Aligned_cols=23  Identities=30%  Similarity=0.644  Sum_probs=17.4

Q ss_pred             CccCCCCcccccchhHHHHHHhh
Q psy16578        152 QFKCPYCDKRCKLKGNLMSHIAL  174 (177)
Q Consensus       152 ~~~C~~C~~~f~~~~~l~~H~~~  174 (177)
                      ||+|..|...|..+..|+.||-.
T Consensus         2 pykcsscsqqfmqkkdlqshmik   24 (26)
T d2dlqa1           2 PYKCSSCSQQFMQKKDLQSHMIK   24 (26)
T ss_dssp             SEECSSSCCEESSHHHHHHHHHH
T ss_pred             CCcccHHHHHHHHHHHHHHHHHh
Confidence            57788888888888778777754

>d1bhia_ g.37.1.1 (A:) Transactivation domain of cre-bp1/atf-2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transactivation domain of cre-bp1/atf-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.18  E-value=0.00014  Score=32.76  Aligned_cols=26  Identities=23%  Similarity=0.471  Sum_probs=23.1

Q ss_pred             CCCccCCC--CcccccchhHHHHHHhhh
Q psy16578        150 EPQFKCPY--CDKRCKLKGNLMSHIALK  175 (177)
Q Consensus       150 ~~~~~C~~--C~~~f~~~~~l~~H~~~~  175 (177)
                      ++||.|..  |+.+|.+...|..|...|
T Consensus         4 dkPF~C~~pGC~q~F~neDhL~vHk~KH   31 (38)
T d1bhia_           4 DKPFLCTAPGCGQRFTNEDHLAVHKHKH   31 (38)
T ss_dssp             CCCEECCCTTTCCEESSHHHHHHHHHHH
T ss_pred             CCceecCCCCccccccchHHHHHhhhhh
Confidence            67799955  999999999999998876

>d2drpa2 g.37.1.1 (A:140-165) Tramtrack protein (two zinc-finger peptide) {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Tramtrack protein (two zinc-finger peptide)
species: Drosophila melanogaster [TaxId: 7227]

Probab=97.02  E-value=0.00025  Score=28.13  Aligned_cols=24  Identities=29%  Similarity=0.725  Sum_probs=19.2

Q ss_pred             cccCccchhccChHHHHHHHHHHh
Q psy16578         50 FACPKCSKTYLRQYTLNAHLRYEC   73 (177)
Q Consensus        50 ~~C~~C~~~f~~~~~l~~H~~~h~   73 (177)
                      |.|+.|-+.|.++.++..|++.-+
T Consensus         2 ypcp~cfkeftrkdnm~ahvkiih   25 (26)
T d2drpa2           2 YPCPFCFKEFTRKDNMTAHVKIIH   25 (26)
T ss_dssp             EECTTTCCEESCHHHHHHHHHHHT
T ss_pred             cCCchhhHHhccccCceEEEEEec
Confidence            678888888888888888877643

>d2eppa1 g.37.1.1 (A:286-338) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.84  E-value=0.00056  Score=32.30  Aligned_cols=25  Identities=20%  Similarity=0.446  Sum_probs=15.8

Q ss_pred             ccccCccchhccChHHHHHHHHHHh
Q psy16578         49 VFACPKCSKTYLRQYTLNAHLRYEC   73 (177)
Q Consensus        49 ~~~C~~C~~~f~~~~~l~~H~~~h~   73 (177)
                      .|.|..|++.|.....|+.|...|-
T Consensus         6 l~pCG~CgK~Ftd~~rLr~HEAQHG   30 (53)
T d2eppa1           6 ILPCGLCGKVFTDANRLRQHEAQHG   30 (53)
T ss_dssp             CCCCTTTCCCCSCHHHHHHHHHHHT
T ss_pred             eeeccccccccCCHHHHhHhHHhcC
Confidence            3566666666666666666666554

>d2ct1a1 g.37.1.1 (A:44-71) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.82  E-value=0.00057  Score=27.78  Aligned_cols=24  Identities=38%  Similarity=0.908  Sum_probs=17.1

Q ss_pred             eeCCCCccccccchHHHhHHHHhc
Q psy16578         79 FKCPHCNKKCHQKCNLKSHIALKH  102 (177)
Q Consensus        79 ~~C~~C~~~f~~~~~l~~H~~~~~  102 (177)
                      |.|+.|+.....+++|+.|++..|
T Consensus         3 ~qcphc~tiiarksdlrvhlrnlh   26 (28)
T d2ct1a1           3 FHCPHCDTVIARKSDLGVHLRKQH   26 (28)
T ss_dssp             EECSSSSCEESSHHHHHHHHHHTS
T ss_pred             ccCCcchhheeehhhhhHHhhhcc
Confidence            677777777777777777776654

>d2eppa1 g.37.1.1 (A:286-338) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.75  E-value=0.00051  Score=32.44  Aligned_cols=27  Identities=22%  Similarity=0.382  Sum_probs=24.1

Q ss_pred             CceecCCccccccChhHHHHHHHHhhC
Q psy16578        122 GSFICPKCSNRYVYKHNLKQHLKFECG  148 (177)
Q Consensus       122 ~~~~C~~C~~~f~~~~~l~~H~~~h~~  148 (177)
                      .-|.|-.|+|.|.....|++|...|-.
T Consensus         5 ~l~pCG~CgK~Ftd~~rLr~HEAQHG~   31 (53)
T d2eppa1           5 GILPCGLCGKVFTDANRLRQHEAQHGV   31 (53)
T ss_dssp             CCCCCTTTCCCCSCHHHHHHHHHHHTT
T ss_pred             ceeeccccccccCCHHHHhHhHHhcCc
Confidence            458999999999999999999998854

>d2dlqa2 g.37.1.1 (A:35-62) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.66  E-value=0.00092  Score=27.04  Aligned_cols=23  Identities=43%  Similarity=0.785  Sum_probs=20.6

Q ss_pred             ceecCCccccccChhHHHHHHHH
Q psy16578        123 SFICPKCSNRYVYKHNLKQHLKF  145 (177)
Q Consensus       123 ~~~C~~C~~~f~~~~~l~~H~~~  145 (177)
                      ||+|..|++.+-.+.+|..|...
T Consensus         1 pf~c~kcgkcyfrkenllehear   23 (28)
T d2dlqa2           1 PFECPKCGKCYFRKENLLEHEAR   23 (28)
T ss_dssp             SCBCTTTCCBCSSHHHHHHHHHH
T ss_pred             CCccccchhhhhhHhHHHHHHHH
Confidence            68999999999999999999754

>d1x6ha1 g.37.1.1 (A:44-80) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.57  E-value=0.00065  Score=29.43  Aligned_cols=21  Identities=24%  Similarity=0.591  Sum_probs=13.7

Q ss_pred             ccCCCCcccccchhHHHHHHh
Q psy16578        153 FKCPYCDKRCKLKGNLMSHIA  173 (177)
Q Consensus       153 ~~C~~C~~~f~~~~~l~~H~~  173 (177)
                      |.|..|++.|.+...+.+|..
T Consensus         5 fvcskcgktftrrntm~rha~   25 (37)
T d1x6ha1           5 FVCSKCGKTFTRRNTMARHAD   25 (37)
T ss_dssp             EECSSSCCEESCHHHHHHHHH
T ss_pred             eeecccccchhcchHHHHHhh
Confidence            666666666666666666654

>d2glia4 g.37.1.1 (A:198-228) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.52  E-value=0.00044  Score=29.31  Aligned_cols=25  Identities=16%  Similarity=0.332  Sum_probs=21.7

Q ss_pred             CCccCCC--CcccccchhHHHHHH-hhh
Q psy16578        151 PQFKCPY--CDKRCKLKGNLMSHI-ALK  175 (177)
Q Consensus       151 ~~~~C~~--C~~~f~~~~~l~~H~-~~~  175 (177)
                      +||.|.+  |.+.|++.+.-..|+ |+|
T Consensus         1 kPY~C~~~gC~KafsNsSDraKHqnRTH   28 (31)
T d2glia4           1 KPYMCEHEGCSKAFSNASDRAKHQNRTH   28 (31)
T ss_dssp             CCEECCSTTCCCEESSSSTTHHHHHHTT
T ss_pred             CCccccCCChhhhhcchhhhhhhccccc
Confidence            3699988  999999999999998 555

>d1x5wa1 g.37.1.1 (A:8-35) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.48  E-value=0.0014  Score=26.65  Aligned_cols=25  Identities=28%  Similarity=0.559  Sum_probs=22.7

Q ss_pred             ceecCCccccccChhHHHHHHHHhh
Q psy16578        123 SFICPKCSNRYVYKHNLKQHLKFEC  147 (177)
Q Consensus       123 ~~~C~~C~~~f~~~~~l~~H~~~h~  147 (177)
                      |-+|..|..++.++..|+.|.++|-
T Consensus         2 pekc~ecsyscsskaalrvh~rihc   26 (28)
T d1x5wa1           2 PEKCSECSYSCSSKAALRIHERIHC   26 (28)
T ss_dssp             SEECSSSSCEESSHHHHHHHHGGGC
T ss_pred             CccCcccccccCcHHHHHHhhcccc
Confidence            4689999999999999999999884

>d2glia2 g.37.1.1 (A:135-167) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.35  E-value=0.0012  Score=28.89  Aligned_cols=20  Identities=15%  Similarity=0.157  Sum_probs=17.2

Q ss_pred             cccccChhHHHHHHHHhhCC
Q psy16578        130 SNRYVYKHNLKQHLKFECGV  149 (177)
Q Consensus       130 ~~~f~~~~~l~~H~~~h~~~  149 (177)
                      ++.|.....|..||+.|+|+
T Consensus        14 ~~pf~a~YkLv~H~R~HTgE   33 (33)
T d2glia2          14 LRPFKAQYMLVVHMRRHTGE   33 (33)
T ss_dssp             TCCCSSHHHHHHHTHHHHCC
T ss_pred             CCcchhHHHHHHHHhhcCCC
Confidence            46799999999999999983

>d1tf3a1 g.37.1.1 (A:1-40) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=96.26  E-value=0.0031  Score=26.40  Aligned_cols=28  Identities=29%  Similarity=0.622  Sum_probs=23.1

Q ss_pred             CceecC--CccccccChhHHHHHHHHhhCC
Q psy16578        122 GSFICP--KCSNRYVYKHNLKQHLKFECGV  149 (177)
Q Consensus       122 ~~~~C~--~C~~~f~~~~~l~~H~~~h~~~  149 (177)
                      +.|.|.  .|+..|...+.|..|+..|+|+
T Consensus         2 k~~iCsf~dC~A~ynk~wkL~AHLckHTGe   31 (31)
T d1tf3a1           2 KRYICSFADCGAAYNKNWKLQAHLSKHTGE   31 (31)
T ss_dssp             CCEECSSGGGCCEESSHHHHHHHHHHHHCC
T ss_pred             CceEeeCCCcchhhccchhhhHHhhhhcCC
Confidence            457784  5999999999999999999873

>d2j7ja1 g.37.1.1 (A:1-28) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=96.11  E-value=0.0032  Score=25.28  Aligned_cols=20  Identities=20%  Similarity=0.345  Sum_probs=13.2

Q ss_pred             CccccccChhHHHHHHHHhh
Q psy16578        128 KCSNRYVYKHNLKQHLKFEC  147 (177)
Q Consensus       128 ~C~~~f~~~~~l~~H~~~h~  147 (177)
                      .|++.|+....|..|+-+|+
T Consensus         8 ~c~kafkkhnqlkvhqf~ht   27 (28)
T d2j7ja1           8 NCGKAFKKHNQLKVHQFSHT   27 (28)
T ss_dssp             TCCCEESSHHHHHHHHHHHH
T ss_pred             CchHHHhhccceEEEeeccc
Confidence            36777777667777666654

>d2j7ja1 g.37.1.1 (A:1-28) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=95.91  E-value=0.002  Score=25.87  Aligned_cols=24  Identities=25%  Similarity=0.510  Sum_probs=20.8

Q ss_pred             ccCCC--CcccccchhHHHHHHhhhc
Q psy16578        153 FKCPY--CDKRCKLKGNLMSHIALKH  176 (177)
Q Consensus       153 ~~C~~--C~~~f~~~~~l~~H~~~~h  176 (177)
                      |.|..  |++.|.....|..|+..|+
T Consensus         2 yvchfe~c~kafkkhnqlkvhqf~ht   27 (28)
T d2j7ja1           2 YVCHFENCGKAFKKHNQLKVHQFSHT   27 (28)
T ss_dssp             EECCSTTCCCEESSHHHHHHHHHHHH
T ss_pred             eEEEecCchHHHhhccceEEEeeccc
Confidence            66755  9999999999999998874

>d2ctda2 g.37.1.1 (A:61-90) Zinc finger protein 512, ZNF512 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 512, ZNF512
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.76  E-value=0.0057  Score=25.12  Aligned_cols=25  Identities=32%  Similarity=0.780  Sum_probs=18.0

Q ss_pred             eeCCCCccccccchHHHhHHHHhcC
Q psy16578         79 FKCPHCNKKCHQKCNLKSHIALKHD  103 (177)
Q Consensus        79 ~~C~~C~~~f~~~~~l~~H~~~~~~  103 (177)
                      |.|..||+...+...+.-|+...|.
T Consensus         3 ftc~hcgkqlks~~gmkyhvmadhn   27 (30)
T d2ctda2           3 FTCHHCGKQLRSLAGMKYHVMANHN   27 (30)
T ss_dssp             CCCSSSCCCCSSHHHHHHHHHHHTC
T ss_pred             eechhHHHHHhhccCceEEEeeccc
Confidence            6777777777777777777666554

>d2ctda2 g.37.1.1 (A:61-90) Zinc finger protein 512, ZNF512 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 512, ZNF512
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.63  E-value=0.0069  Score=24.87  Aligned_cols=24  Identities=25%  Similarity=0.598  Sum_probs=18.7

Q ss_pred             ccCCCCcccccchhHHHHHHhhhc
Q psy16578        153 FKCPYCDKRCKLKGNLMSHIALKH  176 (177)
Q Consensus       153 ~~C~~C~~~f~~~~~l~~H~~~~h  176 (177)
                      |.|..|+++..+...++-|+-.-|
T Consensus         3 ftc~hcgkqlks~~gmkyhvmadh   26 (30)
T d2ctda2           3 FTCHHCGKQLRSLAGMKYHVMANH   26 (30)
T ss_dssp             CCCSSSCCCCSSHHHHHHHHHHHT
T ss_pred             eechhHHHHHhhccCceEEEeecc
Confidence            788888888888888888876544

>d1x6ha1 g.37.1.1 (A:44-80) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.42  E-value=0.0063  Score=26.24  Aligned_cols=25  Identities=20%  Similarity=0.473  Sum_probs=20.1

Q ss_pred             eeCCCCccccccchHHHhHHHHhcC
Q psy16578         79 FKCPHCNKKCHQKCNLKSHIALKHD  103 (177)
Q Consensus        79 ~~C~~C~~~f~~~~~l~~H~~~~~~  103 (177)
                      |.|.-||+.|.....|.+|-....|
T Consensus         5 fvcskcgktftrrntm~rha~nc~g   29 (37)
T d1x6ha1           5 FVCSKCGKTFTRRNTMARHADNCAG   29 (37)
T ss_dssp             EECSSSCCEESCHHHHHHHHHHCCC
T ss_pred             eeecccccchhcchHHHHHhhhcCC
Confidence            7888888888888888888766655

>d1y0jb1 g.37.1.2 (B:1-36) U-shaped transcription factor, different fingers {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: C2HC finger
domain: U-shaped transcription factor, different fingers
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=95.41  E-value=0.0033  Score=26.88  Aligned_cols=22  Identities=27%  Similarity=0.532  Sum_probs=19.3

Q ss_pred             eeCCCCccccccchHHHhHHHH
Q psy16578         79 FKCPHCNKKCHQKCNLKSHIAL  100 (177)
Q Consensus        79 ~~C~~C~~~f~~~~~l~~H~~~  100 (177)
                      |.|+-||..|.+.+.|..|+..
T Consensus         9 f~c~pcgirfss~stleahqty   30 (36)
T d1y0jb1           9 FMCLPCGIAFSSPSTLEAHQAY   30 (36)
T ss_dssp             CBCTTTCCBCSCHHHHHHHTTT
T ss_pred             eeccccceeecChhHHHhhhhe
Confidence            8899999999999999998743

>d1zr9a1 g.37.1.4 (A:28-94) Zinc finger protein 593, ZNF593 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: HkH motif-containing C2H2 finger
domain: Zinc finger protein 593, ZNF593
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.40  E-value=0.0024  Score=33.17  Aligned_cols=21  Identities=24%  Similarity=0.447  Sum_probs=11.5

Q ss_pred             ccCCCCcccccchhHHHHHHh
Q psy16578        153 FKCPYCDKRCKLKGNLMSHIA  173 (177)
Q Consensus       153 ~~C~~C~~~f~~~~~l~~H~~  173 (177)
                      |.|..|++.|.+..+|..|++
T Consensus        16 fYCv~C~K~F~se~~l~~H~k   36 (67)
T d1zr9a1          16 HRCLACARYFIDSTNLKTHFR   36 (67)
T ss_dssp             SEETTTTEECSSHHHHHHHTT
T ss_pred             EecccccCccCCHHHHHHHHc
Confidence            555555555555555555554

>d1yuja_ g.37.1.1 (A:) GAGA factor {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GAGA factor
species: Drosophila melanogaster [TaxId: 7227]

Probab=95.36  E-value=0.023  Score=26.57  Aligned_cols=30  Identities=23%  Similarity=0.364  Sum_probs=22.7

Q ss_pred             CCCccccCccchhccChHHHHHHHHHHhCC
Q psy16578         46 GEDVFACPKCSKTYLRQYTLNAHLRYECGK   75 (177)
Q Consensus        46 ~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~   75 (177)
                      .+.+-.|++|+....+..+|++|+..-|-.
T Consensus        21 s~qpatcpic~avirqsrnlrrhlel~hf~   50 (54)
T d1yuja_          21 SEQPATCPICYAVIRQSRNLRRHLELRHFA   50 (54)
T ss_dssp             TSCCEECTTTCCEESSHHHHHHHHHHHTSC
T ss_pred             ccCCCCCchHHHHHHHHHHHHHHHHHHhhc
Confidence            445678888888888888888888776644

>d1ubdc1 g.37.1.1 (C:295-322) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.33  E-value=0.005  Score=25.06  Aligned_cols=17  Identities=18%  Similarity=0.552  Sum_probs=8.3

Q ss_pred             ccccccChhHHHHHHHH
Q psy16578        129 CSNRYVYKHNLKQHLKF  145 (177)
Q Consensus       129 C~~~f~~~~~l~~H~~~  145 (177)
                      |++.|.+.+.+++|+.+
T Consensus         9 C~K~Frd~saMRKHlht   25 (28)
T d1ubdc1           9 CTKMFRDNSAMRKHLHT   25 (28)
T ss_dssp             CCCEESSHHHHHHHHGG
T ss_pred             HHHHhhchHHHHHHhhc
Confidence            44555555555544443

>d1tf3a3 g.37.1.1 (A:71-101) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=94.99  E-value=0.01  Score=24.33  Aligned_cols=24  Identities=38%  Similarity=0.681  Sum_probs=17.2

Q ss_pred             ccCCC--CcccccchhHHHHHHhhhc
Q psy16578        153 FKCPY--CDKRCKLKGNLMSHIALKH  176 (177)
Q Consensus       153 ~~C~~--C~~~f~~~~~l~~H~~~~h  176 (177)
                      |.|+.  |+..|..++++..|...-|
T Consensus         3 f~cdsd~cdl~fttkanmkkhfnrfh   28 (31)
T d1tf3a3           3 FTCDSDGCDLRFTTKANMKKHFNRFH   28 (31)
T ss_dssp             EECSSSSCCCEESSHHHHHHHHHHHT
T ss_pred             ccccCCCcceEEeehHHHHHHHhhhc
Confidence            56643  7788888888888876554

>d1ubdc1 g.37.1.1 (C:295-322) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.98  E-value=0.0091  Score=24.27  Aligned_cols=18  Identities=17%  Similarity=0.377  Sum_probs=16.7

Q ss_pred             CcccccchhHHHHHHhhh
Q psy16578        158 CDKRCKLKGNLMSHIALK  175 (177)
Q Consensus       158 C~~~f~~~~~l~~H~~~~  175 (177)
                      |.+.|...++++.|+.+|
T Consensus         9 C~K~Frd~saMRKHlhtH   26 (28)
T d1ubdc1           9 CTKMFRDNSAMRKHLHTH   26 (28)
T ss_dssp             CCCEESSHHHHHHHHGGG
T ss_pred             HHHHhhchHHHHHHhhcc
Confidence            889999999999999876

>d1y0jb1 g.37.1.2 (B:1-36) U-shaped transcription factor, different fingers {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: C2HC finger
domain: U-shaped transcription factor, different fingers
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=94.74  E-value=0.0089  Score=25.49  Aligned_cols=21  Identities=29%  Similarity=0.441  Sum_probs=16.0

Q ss_pred             ccCCCCcccccchhHHHHHHh
Q psy16578        153 FKCPYCDKRCKLKGNLMSHIA  173 (177)
Q Consensus       153 ~~C~~C~~~f~~~~~l~~H~~  173 (177)
                      |-|.-||-.|++.+.|..|+.
T Consensus         9 f~c~pcgirfss~stleahqt   29 (36)
T d1y0jb1           9 FMCLPCGIAFSSPSTLEAHQA   29 (36)
T ss_dssp             CBCTTTCCBCSCHHHHHHHTT
T ss_pred             eeccccceeecChhHHHhhhh
Confidence            777778877877777777764

>d1zr9a1 g.37.1.4 (A:28-94) Zinc finger protein 593, ZNF593 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: HkH motif-containing C2H2 finger
domain: Zinc finger protein 593, ZNF593
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.71  E-value=0.005  Score=31.92  Aligned_cols=26  Identities=23%  Similarity=0.664  Sum_probs=20.3

Q ss_pred             CCCccccCccchhccChHHHHHHHHH
Q psy16578         46 GEDVFACPKCSKTYLRQYTLNAHLRY   71 (177)
Q Consensus        46 ~~~~~~C~~C~~~f~~~~~l~~H~~~   71 (177)
                      +...|-|..|++.|.+..+|..|+++
T Consensus        12 G~gqfYCv~C~K~F~se~~l~~H~ks   37 (67)
T d1zr9a1          12 GGGLHRCLACARYFIDSTNLKTHFRS   37 (67)
T ss_dssp             GGGCSEETTTTEECSSHHHHHHHTTC
T ss_pred             CCCEEecccccCccCCHHHHHHHHcc
Confidence            34458888888888888888888765

>d1yuja_ g.37.1.1 (A:) GAGA factor {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GAGA factor
species: Drosophila melanogaster [TaxId: 7227]

Probab=94.49  E-value=0.057  Score=25.16  Aligned_cols=32  Identities=28%  Similarity=0.472  Sum_probs=24.2

Q ss_pred             cccCCCCceecCCccccccChhHHHHHHHHhh
Q psy16578        116 RNSQLNGSFICPKCSNRYVYKHNLKQHLKFEC  147 (177)
Q Consensus       116 ~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~  147 (177)
                      .....+.|-.|+.|+.....+.+|++|+..-|
T Consensus        17 srs~s~qpatcpic~avirqsrnlrrhlel~h   48 (54)
T d1yuja_          17 SRSQSEQPATCPICYAVIRQSRNLRRHLELRH   48 (54)
T ss_dssp             TTTTTSCCEECTTTCCEESSHHHHHHHHHHHT
T ss_pred             ccccccCCCCCchHHHHHHHHHHHHHHHHHHh
Confidence            33455678888888888888888888887543

>d2drpa1 g.37.1.1 (A:103-139) Tramtrack protein (two zinc-finger peptide) {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Tramtrack protein (two zinc-finger peptide)
species: Drosophila melanogaster [TaxId: 7227]

Probab=94.49  E-value=0.011  Score=25.55  Aligned_cols=21  Identities=29%  Similarity=0.622  Sum_probs=10.5

Q ss_pred             ceecCCccccccChhHHHHHH
Q psy16578        123 SFICPKCSNRYVYKHNLKQHL  143 (177)
Q Consensus       123 ~~~C~~C~~~f~~~~~l~~H~  143 (177)
                      .|.|..|.+.+..-+++.+|.
T Consensus         8 ~yRC~~C~r~YTHISNFCRHy   28 (37)
T d2drpa1           8 TYRCKVCSRVYTHISNFCRHY   28 (37)
T ss_dssp             EEECTTTCCEESSHHHHHHHH
T ss_pred             EEEeehhhHHHHHHHHHHHHH
Confidence            345555555555555555444

>d2glia2 g.37.1.1 (A:135-167) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.45  E-value=0.011  Score=25.81  Aligned_cols=19  Identities=16%  Similarity=0.069  Sum_probs=16.7

Q ss_pred             cccccchhHHHHHHhhhcC
Q psy16578        159 DKRCKLKGNLMSHIALKHT  177 (177)
Q Consensus       159 ~~~f~~~~~l~~H~~~~h~  177 (177)
                      ++.|+....|..|||+|+|
T Consensus        14 ~~pf~a~YkLv~H~R~HTg   32 (33)
T d2glia2          14 LRPFKAQYMLVVHMRRHTG   32 (33)
T ss_dssp             TCCCSSHHHHHHHTHHHHC
T ss_pred             CCcchhHHHHHHHHhhcCC
Confidence            3569999999999999986

>d1vd4a_ g.41.3.1 (A:) Transcription initiation factor TFIIE-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Zinc beta-ribbon
family: Transcriptional factor domain
domain: Transcription initiation factor TFIIE-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.32  E-value=0.016  Score=29.47  Aligned_cols=42  Identities=21%  Similarity=0.577  Sum_probs=27.4

Q ss_pred             CCCCCCccccCccchhccChHHHHHHHHHHhCCCCceeCCCCcccc
Q psy16578         43 KPAGEDVFACPKCSKTYLRQYTLNAHLRYECGKRPKFKCPHCNKKC   88 (177)
Q Consensus        43 ~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C~~~f   88 (177)
                      .......|.|+.|++.|+.-.++.-   .-... ..|.|..|+...
T Consensus         8 d~~~~~~y~Cp~C~~~ys~Lda~~L---~d~~~-~~F~C~~C~~el   49 (62)
T d1vd4a_           8 DSTNRASFKCPVCSSTFTDLEANQL---FDPMT-GTFRCTFCHTEV   49 (62)
T ss_dssp             SCCSSSEEECSSSCCEEEHHHHHHH---EETTT-TEEBCSSSCCBC
T ss_pred             ccccCCceECCCCCCCcchhhHHHh---cCcCC-CeEEecCCCCEE
Confidence            3345567999999999986555422   22222 239999998643

>d2drpa1 g.37.1.1 (A:103-139) Tramtrack protein (two zinc-finger peptide) {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Tramtrack protein (two zinc-finger peptide)
species: Drosophila melanogaster [TaxId: 7227]

Probab=93.25  E-value=0.048  Score=23.46  Aligned_cols=27  Identities=22%  Similarity=0.540  Sum_probs=23.6

Q ss_pred             CCCccCCCCcccccchhHHHHHHhhhc
Q psy16578        150 EPQFKCPYCDKRCKLKGNLMSHIALKH  176 (177)
Q Consensus       150 ~~~~~C~~C~~~f~~~~~l~~H~~~~h  176 (177)
                      +..|.|.+|.+.+..-+++.+|.-+.|
T Consensus         6 ~~~yRC~~C~r~YTHISNFCRHyvtSH   32 (37)
T d2drpa1           6 EHTYRCKVCSRVYTHISNFCRHYVTSH   32 (37)
T ss_dssp             TTEEECTTTCCEESSHHHHHHHHHHHS
T ss_pred             CcEEEeehhhHHHHHHHHHHHHHHhhc
Confidence            445999999999999999999987665

>d2dlka1 g.37.1.1 (A:8-37) Zinc finger protein 692, ZNF692 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 692, ZNF692
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.21  E-value=0.036  Score=22.55  Aligned_cols=17  Identities=18%  Similarity=0.268  Sum_probs=9.4

Q ss_pred             CcccccchhHHHHHHhh
Q psy16578        158 CDKRCKLKGNLMSHIAL  174 (177)
Q Consensus       158 C~~~f~~~~~l~~H~~~  174 (177)
                      |++.|++...|.-|.+.
T Consensus         8 c~kifsnrqylnhh~ky   24 (30)
T d2dlka1           8 CGRIFSNRQYLNHHKKY   24 (30)
T ss_dssp             TCCEESSHHHHHHHHHH
T ss_pred             chhhhccHHHHHhHHHH
Confidence            55555555555555543

>d1x6fa1 g.37.1.1 (A:8-82) Zinc finger protein 462, ZNF462 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 462, ZNF462
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.50  E-value=0.082  Score=26.54  Aligned_cols=26  Identities=19%  Similarity=0.498  Sum_probs=18.7

Q ss_pred             CccccCccchhccChHHHHHHHHHHh
Q psy16578         48 DVFACPKCSKTYLRQYTLNAHLRYEC   73 (177)
Q Consensus        48 ~~~~C~~C~~~f~~~~~l~~H~~~h~   73 (177)
                      ..|+|..|+..|-+...|..|+..|.
T Consensus        17 ~~yQC~HCd~K~~s~~el~~hl~~hn   42 (75)
T d1x6fa1          17 STYQCKHCDSKLQSTAELTSHLNIHN   42 (75)
T ss_dssp             SCEECSSSCCEESSHHHHHHHHHHHH
T ss_pred             ceeeechhHHHHhhHHHHHHHHHhcc
Confidence            34777777777777777777776664

>d1x6fa1 g.37.1.1 (A:8-82) Zinc finger protein 462, ZNF462 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 462, ZNF462
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.65  E-value=0.047  Score=27.45  Aligned_cols=24  Identities=21%  Similarity=0.627  Sum_probs=13.7

Q ss_pred             ceecCCccccccChhHHHHHHHHh
Q psy16578        123 SFICPKCSNRYVYKHNLKQHLKFE  146 (177)
Q Consensus       123 ~~~C~~C~~~f~~~~~l~~H~~~h  146 (177)
                      -|.|..|+..|.+-..|..|+..|
T Consensus        18 ~yQC~HCd~K~~s~~el~~hl~~h   41 (75)
T d1x6fa1          18 TYQCKHCDSKLQSTAELTSHLNIH   41 (75)
T ss_dssp             CEECSSSCCEESSHHHHHHHHHHH
T ss_pred             eeeechhHHHHhhHHHHHHHHHhc
Confidence            456666666665555555555443

>d1wjpa3 g.37.1.1 (A:67-107) Zinc finger protein 295, ZNF295 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 295, ZNF295
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.83  E-value=0.059  Score=23.42  Aligned_cols=26  Identities=19%  Similarity=0.433  Sum_probs=23.3

Q ss_pred             eeCCCCccccccchHHHhHHHHhcCC
Q psy16578         79 FKCPHCNKKCHQKCNLKSHIALKHDQ  104 (177)
Q Consensus        79 ~~C~~C~~~f~~~~~l~~H~~~~~~~  104 (177)
                      ..|-+|-+.|++...+-+|+...|..
T Consensus         4 ltclecmrtfkssfsiwrhqvevhnq   29 (41)
T d1wjpa3           4 LTCLECMRTFKSSFSIWRHQVEVHNQ   29 (41)
T ss_dssp             GEEGGGTEECSSHHHHHHHHHHTSCC
T ss_pred             ccHHHHHHHHHHHHHHHHhhheeccc
Confidence            67999999999999999999888864

>d1m36a_ g.37.1.2 (A:) Monocytic leukemia zinc finger protein Moz {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: C2HC finger
domain: Monocytic leukemia zinc finger protein Moz
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.66  E-value=0.12  Score=22.34  Aligned_cols=25  Identities=24%  Similarity=0.436  Sum_probs=21.2

Q ss_pred             CCceecCCccccccChhHHHHHHHH
Q psy16578        121 NGSFICPKCSNRYVYKHNLKQHLKF  145 (177)
Q Consensus       121 ~~~~~C~~C~~~f~~~~~l~~H~~~  145 (177)
                      .+-|.|.+|-+-.++...|.+|+..
T Consensus         5 pkLyiCEfCLKYmks~~~l~RH~~K   29 (33)
T d1m36a_           5 PKLYLCEFCLKYMKSRTILQQHMKK   29 (33)
T ss_dssp             CCCEECSSSCCEESCHHHHHHHHHH
T ss_pred             CeeeeehhhhhhhCCHHHHHHHHHh
Confidence            4568999999999999999999763

>d1nnqa2 g.41.5.1 (A:135-171) Rubrerythrin, C-terminal domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Rubredoxin-like
family: Rubredoxin
domain: Rubrerythrin, C-terminal domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=89.23  E-value=0.12  Score=23.12  Aligned_cols=26  Identities=31%  Similarity=0.768  Sum_probs=19.7

Q ss_pred             CCceecCCccccccChhHHHHHHHHhhCCCCCccCCCCcc
Q psy16578        121 NGSFICPKCSNRYVYKHNLKQHLKFECGVEPQFKCPYCDK  160 (177)
Q Consensus       121 ~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C~~  160 (177)
                      ++.|.|..||..+             .+ +.|-.|++|+.
T Consensus         3 ~~~~~C~vCG~i~-------------~g-~~P~~CPvCg~   28 (37)
T d1nnqa2           3 KKVYICPICGYTA-------------VD-EAPEYCPVCGA   28 (37)
T ss_dssp             SCEEECTTTCCEE-------------ES-CCCSBCTTTCC
T ss_pred             CcEEECCCCCCEe-------------cC-CCCCcCCCCCC
Confidence            4568999998764             34 56789999984

>d1yuza2 g.41.5.1 (A:167-202) Nigerythrin, C-terminal domain {Desulfovibrio vulgaris [TaxId: 881]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Rubredoxin-like
family: Rubredoxin
domain: Nigerythrin, C-terminal domain
species: Desulfovibrio vulgaris [TaxId: 881]

Probab=88.98  E-value=0.15  Score=22.60  Aligned_cols=26  Identities=35%  Similarity=0.710  Sum_probs=19.8

Q ss_pred             CCceecCCccccccChhHHHHHHHHhhCCCCCccCCCCcc
Q psy16578        121 NGSFICPKCSNRYVYKHNLKQHLKFECGVEPQFKCPYCDK  160 (177)
Q Consensus       121 ~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C~~  160 (177)
                      ++-|.|..||...             .+ +.|-.|++|+.
T Consensus         3 ~~~~vC~vCGyi~-------------~g-~~Pe~CPvCg~   28 (36)
T d1yuza2           3 DKFHLCPICGYIH-------------KG-EDFEKCPICFR   28 (36)
T ss_dssp             CCEEECSSSCCEE-------------ES-SCCSBCTTTCC
T ss_pred             CCEEECCCCCCEe-------------eC-CCCCcCCCCCC
Confidence            4678999998653             35 56789999984

>d2gmga1 a.4.5.82 (A:1-105) Hypothetical protein PF0610 {Pyrococcus furiosus [TaxId: 2261]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: PF0610-like
domain: Hypothetical protein PF0610
species: Pyrococcus furiosus [TaxId: 2261]

Probab=87.68  E-value=0.15  Score=28.54  Aligned_cols=28  Identities=25%  Similarity=0.644  Sum_probs=21.0

Q ss_pred             ceeCCCCccccccchHHHhHHHHhcCCCCCCCCccccccccCCCCceecCCccccc
Q psy16578         78 KFKCPHCNKKCHQKCNLKSHIALKHDQLLAPLAPRSYRRNSQLNGSFICPKCSNRY  133 (177)
Q Consensus        78 ~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~C~~~f  133 (177)
                      |-.|..||+.|...                            ..+|-.|+.|...+
T Consensus        67 Pp~CrkCGfvFr~~----------------------------~kkPSRCP~CKSE~   94 (105)
T d2gmga1          67 PAQCRKCGFVFKAE----------------------------INIPSRCPKCKSEW   94 (105)
T ss_dssp             CCBBTTTCCBCCCC----------------------------SSCCSSCSSSCCCC
T ss_pred             ChhhhhcCCeeccc----------------------------CCCCCCCCCCCCcc
Confidence            46799999999532                            35788999997543

>d1wira_ g.37.1.5 (A:) Protein arginine N-methyltransferase 3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: variant C2H2 finger
domain: Protein arginine N-methyltransferase 3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=86.44  E-value=0.34  Score=27.97  Aligned_cols=29  Identities=17%  Similarity=0.194  Sum_probs=25.3

Q ss_pred             CCCceecCCccccccChhHHHHHHHHhhC
Q psy16578        120 LNGSFICPKCSNRYVYKHNLKQHLKFECG  148 (177)
Q Consensus       120 ~~~~~~C~~C~~~f~~~~~l~~H~~~h~~  148 (177)
                      .+.+-.|.+|.+.|.+...+..||+..|+
T Consensus        12 e~~~~~CLFCd~~f~s~~~~l~H~k~~H~   40 (121)
T d1wira_          12 GRQHTPCLFCDRLFASAEETFSHCKLEHQ   40 (121)
T ss_dssp             CCCCEECSSSCCEESSHHHHHHHHHHSSC
T ss_pred             CcccceecccCCccCCHHHHHHHHHHhhC
Confidence            34567899999999999999999998777

>d2ct5a1 g.37.1.6 (A:8-67) Zinc finger BED domain-containing protein 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: BED zinc finger
domain: Zinc finger BED domain-containing protein 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.24  E-value=0.2  Score=24.72  Aligned_cols=23  Identities=30%  Similarity=0.600  Sum_probs=11.8

Q ss_pred             ceecCCccccccCh---hHHHHHHHH
Q psy16578        123 SFICPKCSNRYVYK---HNLKQHLKF  145 (177)
Q Consensus       123 ~~~C~~C~~~f~~~---~~l~~H~~~  145 (177)
                      ...|..|.+.+..+   ++|..|++.
T Consensus        22 ~i~C~lC~k~i~~~GNTtNl~~HL~~   47 (60)
T d2ct5a1          22 KIYCRICMAQIAYSGNTSNLSYHLEK   47 (60)
T ss_dssp             CCEETTTTEECCCCSSTHHHHHHHHH
T ss_pred             chHHHHHHHHhcccCCcchHHHHHHh
Confidence            34566666555433   355555543

>d2yrka1 g.37.1.4 (A:8-55) Zinc finger homeobox protein 4, ZFHX4 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: HkH motif-containing C2H2 finger
domain: Zinc finger homeobox protein 4, ZFHX4
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.21  E-value=0.22  Score=23.25  Aligned_cols=21  Identities=19%  Similarity=0.453  Sum_probs=11.9

Q ss_pred             ccCCCCcccccchhHHHHHHh
Q psy16578        153 FKCPYCDKRCKLKGNLMSHIA  173 (177)
Q Consensus       153 ~~C~~C~~~f~~~~~l~~H~~  173 (177)
                      -.|.+|+..++.+..++.|+.
T Consensus         7 ~eC~lC~vKYs~~~SvrdHiF   27 (48)
T d2yrka1           7 PECTLCGVKYSARLSIRDHIF   27 (48)
T ss_dssp             SCCTTTTCCCCSSSCHHHHHT
T ss_pred             ccCcccceeeeeecchHhhhh
Confidence            456666655555555555553

>d2akla2 g.41.3.5 (A:3-40) Hypothetical protein PA0128, N-terminal domain {Pseudomonas aeruginosa [TaxId: 287]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Zinc beta-ribbon
family: PhnA zinc-binding domain
domain: Hypothetical protein PA0128, N-terminal domain
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=84.37  E-value=0.14  Score=22.91  Aligned_cols=28  Identities=29%  Similarity=0.863  Sum_probs=18.4

Q ss_pred             ecCCccccccChhHHHHHHHHhhCCCCCccCCCCcccccc
Q psy16578        125 ICPKCSNRYVYKHNLKQHLKFECGVEPQFKCPYCDKRCKL  164 (177)
Q Consensus       125 ~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~C~~C~~~f~~  164 (177)
                      .|+.|+..|...+            ...|.|++|+..++.
T Consensus         5 ~CP~C~seytYed------------g~l~vCPeC~hEW~~   32 (38)
T d2akla2           5 PCPQCNSEYTYED------------GALLVCPECAHEWSP   32 (38)
T ss_dssp             CCTTTCCCCCEEC------------SSSEEETTTTEEECT
T ss_pred             cCCCCCCcceEcC------------CCEEECCcccCcCCc
Confidence            4777777665543            223888888877654

>d1zu1a2 g.37.1.4 (A:74-128) dsRNA-binding protein ZFa (ZNF346, JAZ) {African clawed frog (Xenopus laevis) [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: HkH motif-containing C2H2 finger
domain: dsRNA-binding protein ZFa (ZNF346, JAZ)
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

Probab=84.22  E-value=0.67  Score=22.43  Aligned_cols=20  Identities=25%  Similarity=0.622  Sum_probs=16.6

Q ss_pred             ccCccchhccChHHHHHHHH
Q psy16578         51 ACPKCSKTYLRQYTLNAHLR   70 (177)
Q Consensus        51 ~C~~C~~~f~~~~~l~~H~~   70 (177)
                      -|.+|+.+|.+...-..|..
T Consensus        23 ~C~lCn~~Fns~~~AqsHY~   42 (55)
T d1zu1a2          23 CCPVCNMTFSSPVVAESHYI   42 (55)
T ss_dssp             EETTTTEECSSHHHHHHHHT
T ss_pred             hhhhhhcccCCHHHHHHHhh
Confidence            59999999999887777753

>d1wira_ g.37.1.5 (A:) Protein arginine N-methyltransferase 3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: variant C2H2 finger
domain: Protein arginine N-methyltransferase 3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=83.40  E-value=0.71  Score=26.57  Aligned_cols=32  Identities=16%  Similarity=0.294  Sum_probs=25.8

Q ss_pred             CCCCCCccccCccchhccChHHHHHHHHHHhC
Q psy16578         43 KPAGEDVFACPKCSKTYLRQYTLNAHLRYECG   74 (177)
Q Consensus        43 ~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~   74 (177)
                      ......+-.|=.|...|.+...+..|++..|+
T Consensus         9 ~~~e~~~~~CLFCd~~f~s~~~~l~H~k~~H~   40 (121)
T d1wira_           9 PAHGRQHTPCLFCDRLFASAEETFSHCKLEHQ   40 (121)
T ss_dssp             CCCCCCCEECSSSCCEESSHHHHHHHHHHSSC
T ss_pred             CCCCcccceecccCCccCCHHHHHHHHHHhhC
Confidence            33444557899999999999999999988775

>d1jj2y_ g.41.8.1 (Y:) Ribosomal protein L37ae {Archaeon Haloarcula marismortui [TaxId: 2238]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Zn-binding ribosomal proteins
family: Ribosomal protein L37ae
domain: Ribosomal protein L37ae
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=83.07  E-value=0.2  Score=26.02  Aligned_cols=15  Identities=20%  Similarity=0.669  Sum_probs=12.2

Q ss_pred             CCCceecCCcccccc
Q psy16578        120 LNGSFICPKCSNRYV  134 (177)
Q Consensus       120 ~~~~~~C~~C~~~f~  134 (177)
                      ..+.|.|..|++.|.
T Consensus        42 a~GIW~C~kC~~~~A   56 (73)
T d1jj2y_          42 GTGIWMCGHCGYKIA   56 (73)
T ss_dssp             ETTEEEETTTCCEEE
T ss_pred             EEEEEECCCCCCEEe
Confidence            456799999998885

>d1vqoz1 g.41.8.1 (Z:10-82) Ribosomal protein L37ae {Archaeon Haloarcula marismortui [TaxId: 2238]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Zn-binding ribosomal proteins
family: Ribosomal protein L37ae
domain: Ribosomal protein L37ae
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=83.03  E-value=0.2  Score=26.01  Aligned_cols=15  Identities=20%  Similarity=0.685  Sum_probs=12.3

Q ss_pred             CCCceecCCcccccc
Q psy16578        120 LNGSFICPKCSNRYV  134 (177)
Q Consensus       120 ~~~~~~C~~C~~~f~  134 (177)
                      ..+.|.|..|++.|.
T Consensus        42 a~GIW~C~kC~~~~A   56 (73)
T d1vqoz1          42 GTGIWQCSYCDYKFT   56 (73)
T ss_dssp             ETTEEEETTTCCEEE
T ss_pred             EEEEEECCCCCCEEe
Confidence            457899999998885

>d1fu9a_ g.37.1.2 (A:) U-shaped transcription factor, different fingers {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: C2HC finger
domain: U-shaped transcription factor, different fingers
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=83.01  E-value=0.42  Score=20.70  Aligned_cols=21  Identities=19%  Similarity=0.480  Sum_probs=18.3

Q ss_pred             eecCCccccccChhHHHHHHH
Q psy16578        124 FICPKCSNRYVYKHNLKQHLK  144 (177)
Q Consensus       124 ~~C~~C~~~f~~~~~l~~H~~  144 (177)
                      --|..|+-.|.+...++.|..
T Consensus         9 rYC~~CDI~Fn~~~T~~aHKk   29 (36)
T d1fu9a_           9 KYCSTCDISFNYVKTYLAHKQ   29 (36)
T ss_dssp             SEETTTTEECSSHHHHHHHHH
T ss_pred             hHHhhCCceehhHHHHHHHHH
Confidence            469999999999999999854

>d1wjpa2 g.37.1.1 (A:43-66) Zinc finger protein 295, ZNF295 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 295, ZNF295
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.74  E-value=0.51  Score=18.35  Aligned_cols=19  Identities=32%  Similarity=0.520  Sum_probs=12.8

Q ss_pred             cCCCCcccccchhHHHHHH
Q psy16578        154 KCPYCDKRCKLKGNLMSHI  172 (177)
Q Consensus       154 ~C~~C~~~f~~~~~l~~H~  172 (177)
                      .|++|..+|.+..--..|-
T Consensus         2 vcpycslrf~sp~lk~ehe   20 (26)
T d1wjpa2           2 VCPYCSLRFFSPELKQEHE   20 (26)
T ss_dssp             CCTTTCCCBSSHHHHHHHH
T ss_pred             CCCcceeeeCCHHHhhHhh
Confidence            4788888887776555553

>d1wjpa1 g.37.1.1 (A:1-42) Zinc finger protein 295, ZNF295 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 295, ZNF295
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.20  E-value=1.5  Score=19.10  Aligned_cols=25  Identities=20%  Similarity=0.489  Sum_probs=17.8

Q ss_pred             CCccccCccchhccChHHHHHHHHH
Q psy16578         47 EDVFACPKCSKTYLRQYTLNAHLRY   71 (177)
Q Consensus        47 ~~~~~C~~C~~~f~~~~~l~~H~~~   71 (177)
                      +..|.|.+|+..|.+...-..|.+.
T Consensus        14 ke~y~crlcnakl~slleqgnherl   38 (42)
T d1wjpa1          14 KEVYQCRLCNAKLSSLLEQGSHERL   38 (42)
T ss_dssp             CCCCBCTTTCCBCSSHHHHHHHHHH
T ss_pred             cceeeeeehhhhHHHHHHcccHHhH
Confidence            4568999999888876555555543

>d2glia1 g.37.1.1 (A:103-134) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.04  E-value=0.79  Score=19.24  Aligned_cols=21  Identities=24%  Similarity=0.460  Sum_probs=13.2

Q ss_pred             CCCccccccchHHHhHHHHhc
Q psy16578         82 PHCNKKCHQKCNLKSHIALKH  102 (177)
Q Consensus        82 ~~C~~~f~~~~~l~~H~~~~~  102 (177)
                      ..|+..|.+...|..|+..-|
T Consensus         7 ~~C~~eFdtQd~LV~HinndH   27 (32)
T d2glia1           7 DGCSQEFDSQEQLVHHINSEH   27 (32)
T ss_dssp             TTCCCBCSCHHHHHHHHHHHT
T ss_pred             cccccccCCHHHHHHHccccc
Confidence            346666666666666665554