RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy16581
         (194 letters)



>gnl|CDD|215724 pfam00110, wnt, wnt family.  Wnt genes have been identified in
           vertebrates and invertebrates but not in plants,
           unicellular eukaryotes or prokaryotes. In humans, 19 WNT
           proteins are known. Because of their insolubility little
           is known about Wnt protein structure, but all have 23 or
           24 Cys residues whose spacing is highly conserved.
           Signal transduction by Wnt proteins (including the
           Wnt/beta-catenin, the Wnt/Ca++, and the Wnt/polarity
           pathway) is mediated by receptors of the Frizzled and
           LDL-receptor-related protein (LRP) families.
          Length = 308

 Score =  237 bits (608), Expect = 4e-79
 Identities = 90/148 (60%), Positives = 111/148 (75%), Gaps = 3/148 (2%)

Query: 42  QAVIRASKVTCKCHGVSGSCSMITCWQQLTPFREIGEFLRDKYDSATEVRISKRGK---L 98
           +AV R  K  CKCHGVSGSC++ TCW+QL  FRE+G+ L++KYD A +V ++ RGK   L
Sbjct: 153 KAVKRNMKTECKCHGVSGSCTLKTCWKQLPDFREVGDLLKEKYDGAIKVEVNNRGKRRRL 212

Query: 99  QVKNPRFSRPTVNDLVYIDESPNYCVRNPSLGSLGTQGRECNRTSRGLDSCHLLCCGRGY 158
             KNP+   PT  DLVY+++SP+YC RNPSLGSLGT+GRECN+TS G D C LLCCGRGY
Sbjct: 213 VRKNPKSKPPTSTDLVYLEDSPDYCERNPSLGSLGTRGRECNKTSSGTDGCDLLCCGRGY 272

Query: 159 NTAKVTRTFRCRCKFHWCCHVQCQQCTE 186
           NT  V    RC CKFHWCC+V+C+ C E
Sbjct: 273 NTRTVVVVERCNCKFHWCCYVKCKTCRE 300


>gnl|CDD|128408 smart00097, WNT1, found in Wnt-1. 
          Length = 305

 Score =  226 bits (579), Expect = 1e-74
 Identities = 86/149 (57%), Positives = 108/149 (72%), Gaps = 3/149 (2%)

Query: 42  QAVIRASKVTCKCHGVSGSCSMITCWQQLTPFREIGEFLRDKYDSATEVRISKRGK---L 98
            AV +  K  CKCHGVSGSC++ TCW QL  FR++G++L++KYD A+EV + KRG     
Sbjct: 150 LAVKKTMKRECKCHGVSGSCTVKTCWLQLPDFRKVGDYLKEKYDGASEVEVDKRGTNKAP 209

Query: 99  QVKNPRFSRPTVNDLVYIDESPNYCVRNPSLGSLGTQGRECNRTSRGLDSCHLLCCGRGY 158
             KN  F  PT  DLVY++ SP++C +NP  GSLGTQGR+CN+TS+GLD C LLCCGRGY
Sbjct: 210 VPKNSTFKPPTETDLVYLESSPDFCEKNPKTGSLGTQGRQCNKTSKGLDGCDLLCCGRGY 269

Query: 159 NTAKVTRTFRCRCKFHWCCHVQCQQCTEI 187
           NT  V    RC CKFHWCC+V+C+QC E 
Sbjct: 270 NTRTVEVVERCNCKFHWCCYVKCKQCRET 298


>gnl|CDD|150898 pfam10298, WhiA_N, Sporulation Regulator WhiA N terminal.  This
           domain is found at the N terminal of sporulation factor
           WhiA. This domain is related to the LAGLIDADG Homing
           endonuclease domain while the C terminal domain of WhiA
           is predicted to be a DNA binding helix-turn-helix
           domain.
          Length = 86

 Score = 28.3 bits (64), Expect = 0.92
 Identities = 9/32 (28%), Positives = 18/32 (56%), Gaps = 1/32 (3%)

Query: 74  REIGEFLRDKYDSATEVRISKRGKLQVKNPRF 105
           R I   L++ Y   +E+ + ++ KL+ KN  +
Sbjct: 38  RRIYSLLKELYGINSELLVRRKMKLK-KNNVY 68


>gnl|CDD|238561 cd01141, TroA_d, Periplasmic binding protein TroA_d.  These
           proteins are predicted to function as initial receptors
           in the ABC metal ion uptake in eubacteria and archaea.
           They belong to the TroA superfamily of helical backbone
           metal receptor proteins that share a distinct fold and
           ligand binding mechanism.  A typical TroA protein is
           comprised of two globular subdomains connected by a
           single helix and can bind their ligands in the cleft
           between these domains.
          Length = 186

 Score = 28.9 bits (65), Expect = 1.1
 Identities = 13/60 (21%), Positives = 19/60 (31%), Gaps = 6/60 (10%)

Query: 73  FREIGEFLRDKYDSATEVRISKRGKLQVKNPRFSRPTV------NDLVYIDESPNYCVRN 126
               G    DK D A      +   L  K    ++PTV        L Y+    +Y  + 
Sbjct: 115 AAFYGVGKEDKADEAFAQIAGRYRDLAKKVSNLNKPTVAIGKPVKGLWYMPGGNSYVAKM 174


>gnl|CDD|227093 COG4750, LicC, CTP:phosphocholine cytidylyltransferase involved in
           choline phosphorylation for cell surface LPS epitopes
           [Cell envelope biogenesis, outer membrane].
          Length = 231

 Score = 27.8 bits (62), Expect = 3.3
 Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 7/56 (12%)

Query: 74  REIGEFLRDKYDSATEVRISKRGKLQVKNPRFSRPTVNDLV---YIDESPNYCVRN 126
           +E  E+L+DKYD    V +    K +  N  +S     D +   YI +S NY  +N
Sbjct: 57  KEQFEYLKDKYD----VTLVYNPKYREYNNIYSLYLARDFLNNTYIIDSDNYLTKN 108


>gnl|CDD|177447 PHA02664, PHA02664, hypothetical protein; Provisional.
          Length = 534

 Score = 27.3 bits (60), Expect = 5.9
 Identities = 12/29 (41%), Positives = 15/29 (51%), Gaps = 1/29 (3%)

Query: 29  RPARFNFDFWLCLQAVIRASKVTCKC-HG 56
           RPAR  F  W+CL   +R     C+  HG
Sbjct: 96  RPARHVFTVWVCLSGEVRIYAECCQAGHG 124


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.327    0.138    0.471 

Gapped
Lambda     K      H
   0.267   0.0725    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 9,228,982
Number of extensions: 780401
Number of successful extensions: 646
Number of sequences better than 10.0: 1
Number of HSP's gapped: 643
Number of HSP's successfully gapped: 14
Length of query: 194
Length of database: 10,937,602
Length adjustment: 92
Effective length of query: 102
Effective length of database: 6,857,034
Effective search space: 699417468
Effective search space used: 699417468
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 56 (25.4 bits)