BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy16582
(109 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q3EBC8|DCL2_ARATH Endoribonuclease Dicer homolog 2 OS=Arabidopsis thaliana
GN=At3g03300 PE=1 SV=2
Length = 1388
Score = 64.3 bits (155), Expect = 2e-10, Method: Composition-based stats.
Identities = 26/44 (59%), Positives = 36/44 (81%)
Query: 9 FNRGITNILVATDVLEEGIDIQSCNLVIKFDPPQHTRSYVQSKA 52
F RG+ NI+VAT +LEEG+D+QSCNLVI+FDP + S++QS+
Sbjct: 444 FRRGLVNIIVATSILEEGLDVQSCNLVIRFDPASNICSFIQSRG 487
>sp|P34529|DCR1_CAEEL Endoribonuclease dcr-1 OS=Caenorhabditis elegans GN=dcr-1 PE=1 SV=3
Length = 1910
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 28/44 (63%), Positives = 33/44 (75%)
Query: 9 FNRGITNILVATDVLEEGIDIQSCNLVIKFDPPQHTRSYVQSKA 52
F+R N L+AT VLEEG+D++ CNLVIKFD P RSYVQSK
Sbjct: 449 FHRNEINCLIATSVLEEGVDVKQCNLVIKFDRPLDMRSYVQSKG 492
>sp|Q5N870|DCL3A_ORYSJ Endoribonuclease Dicer homolog 3a OS=Oryza sativa subsp. japonica
GN=DCL3A PE=2 SV=1
Length = 1651
Score = 59.7 bits (143), Expect = 6e-09, Method: Composition-based stats.
Identities = 33/67 (49%), Positives = 40/67 (59%), Gaps = 6/67 (8%)
Query: 1 MDVQTMLSFNRGITNILVATDVLEEGIDIQSCNLVIKFDPPQHTRSYVQSKAFTVVRHKA 60
M T+ SF G N+L TDV EEGI + C+ VI+FD P+ TRSYVQS R +A
Sbjct: 463 MQKDTLDSFRSGKVNLLFTTDVAEEGIHVPECSCVIRFDLPRTTRSYVQS------RGRA 516
Query: 61 EQILSQY 67
Q SQY
Sbjct: 517 RQEDSQY 523
>sp|A0MQH0|DICER_CRIGR Endoribonuclease Dicer OS=Cricetulus griseus GN=DICER1 PE=2 SV=3
Length = 1917
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 26/49 (53%), Positives = 34/49 (69%)
Query: 4 QTMLSFNRGITNILVATDVLEEGIDIQSCNLVIKFDPPQHTRSYVQSKA 52
+ + F TN+L+AT V+EEG+DI CNLV++FD P RSYVQSK
Sbjct: 503 EVLRKFRAHETNLLIATSVVEEGVDIPKCNLVVRFDLPTEYRSYVQSKG 551
Score = 30.0 bits (66), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 19/23 (82%)
Query: 74 LQYNSPKINRLLQLLRRYNPDQR 96
L+Y +PK+ +LL++LR+Y P +R
Sbjct: 370 LKYVTPKVMKLLEILRKYKPYER 392
>sp|Q8R418|DICER_MOUSE Endoribonuclease Dicer OS=Mus musculus GN=Dicer1 PE=1 SV=3
Length = 1916
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 26/49 (53%), Positives = 34/49 (69%)
Query: 4 QTMLSFNRGITNILVATDVLEEGIDIQSCNLVIKFDPPQHTRSYVQSKA 52
+ + F TN+L+AT V+EEG+DI CNLV++FD P RSYVQSK
Sbjct: 503 EVLRKFRAHETNLLIATSVVEEGVDIPKCNLVVRFDLPTEYRSYVQSKG 551
Score = 30.0 bits (66), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 19/23 (82%)
Query: 74 LQYNSPKINRLLQLLRRYNPDQR 96
L+Y +PK+ +LL++LR+Y P +R
Sbjct: 370 LKYVTPKVMKLLEILRKYKPYER 392
>sp|B3DLA6|DICER_XENTR Endoribonuclease Dicer OS=Xenopus tropicalis GN=dicer1 PE=2 SV=2
Length = 1893
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 25/49 (51%), Positives = 34/49 (69%)
Query: 4 QTMLSFNRGITNILVATDVLEEGIDIQSCNLVIKFDPPQHTRSYVQSKA 52
+ + F TN+L+AT ++EEG+DI CNLV++FD P RSYVQSK
Sbjct: 494 EVLRKFRAHETNLLIATSIVEEGVDIPKCNLVVRFDLPSEYRSYVQSKG 542
>sp|Q9UPY3|DICER_HUMAN Endoribonuclease Dicer OS=Homo sapiens GN=DICER1 PE=1 SV=3
Length = 1922
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 24/39 (61%), Positives = 31/39 (79%)
Query: 14 TNILVATDVLEEGIDIQSCNLVIKFDPPQHTRSYVQSKA 52
TN+L+AT ++EEG+DI CNLV++FD P RSYVQSK
Sbjct: 513 TNLLIATSIVEEGVDIPKCNLVVRFDLPTEYRSYVQSKG 551
>sp|Q25BN1|DICER_CHICK Endoribonuclease Dicer OS=Gallus gallus GN=DICER1 PE=2 SV=3
Length = 1921
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 25/49 (51%), Positives = 34/49 (69%)
Query: 4 QTMLSFNRGITNILVATDVLEEGIDIQSCNLVIKFDPPQHTRSYVQSKA 52
+ + F TN+L+AT ++EEG+DI CNLV++FD P RSYVQSK
Sbjct: 503 EVLRKFRAHETNLLIATSIVEEGVDIPKCNLVVRFDLPTEYRSYVQSKG 551
>sp|Q6TUI4|DICER_BOVIN Endoribonuclease Dicer OS=Bos taurus GN=DICER1 PE=2 SV=3
Length = 1923
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 24/39 (61%), Positives = 31/39 (79%)
Query: 14 TNILVATDVLEEGIDIQSCNLVIKFDPPQHTRSYVQSKA 52
TN+L+AT ++EEG+DI CNLV++FD P RSYVQSK
Sbjct: 513 TNLLIATSIVEEGVDIPKCNLVVRFDLPTEYRSYVQSKG 551
>sp|Q6TV19|DICER_DANRE Endoribonuclease Dicer OS=Danio rerio GN=dicer1 PE=2 SV=2
Length = 1865
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 25/49 (51%), Positives = 34/49 (69%)
Query: 4 QTMLSFNRGITNILVATDVLEEGIDIQSCNLVIKFDPPQHTRSYVQSKA 52
+ + F TN+L+AT ++EEG+DI CNLV++FD P RSYVQSK
Sbjct: 489 EVLRKFRAHETNLLIATSIVEEGVDIPKCNLVVRFDLPTEYRSYVQSKG 537
>sp|Q2VF18|DCL2_CRYPA Dicer-like protein 2 OS=Cryphonectria parasitica GN=DCL-2 PE=3 SV=1
Length = 1451
Score = 57.0 bits (136), Expect = 3e-08, Method: Composition-based stats.
Identities = 25/55 (45%), Positives = 37/55 (67%)
Query: 4 QTMLSFNRGITNILVATDVLEEGIDIQSCNLVIKFDPPQHTRSYVQSKAFTVVRH 58
Q + +F G N+LVAT VLEEGID+ +CNL+I FD P + R+++Q + +R
Sbjct: 484 QCLEAFREGRKNMLVATSVLEEGIDVPACNLIICFDKPNNLRAFIQRRGRARMRQ 538
>sp|Q9VCU9|DCR1_DROME Endoribonuclease Dcr-1 OS=Drosophila melanogaster GN=Dcr-1 PE=1
SV=1
Length = 2249
Score = 57.0 bits (136), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 23/38 (60%), Positives = 29/38 (76%)
Query: 15 NILVATDVLEEGIDIQSCNLVIKFDPPQHTRSYVQSKA 52
N+L+ T VLEEGID+ CNLV+++DPP RSYVQ K
Sbjct: 564 NVLIGTSVLEEGIDVPKCNLVVRWDPPTTYRSYVQCKG 601
Score = 30.4 bits (67), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 37/73 (50%), Gaps = 10/73 (13%)
Query: 32 CNLVIKFDPPQHTRSYVQ----SKA----FTVVRHKAEQILSQYPKSERYLQ-YNSPKIN 82
CN +K P H R Y+ S A +++ H + L S + ++ Y+SPK+
Sbjct: 308 CNEKLKVKTP-HERHYLLYCLVSTALIQLYSLCEHAFHRHLGSGSDSRQTIERYSSPKVR 366
Query: 83 RLLQLLRRYNPDQ 95
RLLQ LR + P++
Sbjct: 367 RLLQTLRCFKPEE 379
>sp|Q10HL3|DCL2A_ORYSJ Endoribonuclease Dicer homolog 2a OS=Oryza sativa subsp. japonica
GN=DCL2A PE=2 SV=1
Length = 1410
Score = 56.6 bits (135), Expect = 4e-08, Method: Composition-based stats.
Identities = 23/45 (51%), Positives = 34/45 (75%)
Query: 8 SFNRGITNILVATDVLEEGIDIQSCNLVIKFDPPQHTRSYVQSKA 52
SF +G +I++AT +LEEG+D+ SCNLVI+FDP S++QS+
Sbjct: 452 SFRKGKVHIIIATQILEEGLDVPSCNLVIRFDPSATVCSFIQSRG 496
>sp|Q69LX2|DCL2B_ORYSJ Endoribonuclease Dicer homolog 2b OS=Oryza sativa subsp. japonica
GN=DCL2B PE=2 SV=2
Length = 1377
Score = 56.6 bits (135), Expect = 5e-08, Method: Composition-based stats.
Identities = 23/45 (51%), Positives = 34/45 (75%)
Query: 8 SFNRGITNILVATDVLEEGIDIQSCNLVIKFDPPQHTRSYVQSKA 52
SF +G +I++AT +LEEG+D+ SCNLVI+FDP S++QS+
Sbjct: 452 SFRKGKVHIIIATQILEEGLDVPSCNLVIRFDPSATVCSFIQSRG 496
>sp|Q0CEI2|DCL2_ASPTN Dicer-like protein 2 OS=Aspergillus terreus (strain NIH 2624 / FGSC
A1156) GN=dcl2 PE=3 SV=2
Length = 1377
Score = 55.8 bits (133), Expect = 7e-08, Method: Composition-based stats.
Identities = 25/52 (48%), Positives = 36/52 (69%)
Query: 1 MDVQTMLSFNRGITNILVATDVLEEGIDIQSCNLVIKFDPPQHTRSYVQSKA 52
M T+ F G N++VATDVLEEGIDI +C++VI +D P + +S+VQ +
Sbjct: 438 MQRDTLSEFRSGQKNLIVATDVLEEGIDISACSVVICYDKPANVKSFVQRRG 489
>sp|Q7SCC1|DCL2_NEUCR Dicer-like protein 2 OS=Neurospora crassa (strain ATCC 24698 /
74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=dcl-2
PE=2 SV=3
Length = 1540
Score = 55.5 bits (132), Expect = 9e-08, Method: Composition-based stats.
Identities = 33/95 (34%), Positives = 52/95 (54%), Gaps = 4/95 (4%)
Query: 2 DVQTMLSFNRGITNILVATDVLEEGIDIQSCNLVIKFDPPQHTRSYVQSKAFTVVRHKAE 61
D+ ++ F G N+LVAT VLEEGID+ CNLVI FD P + +S++Q +
Sbjct: 474 DMTSLEGFRLGRFNLLVATSVLEEGIDVPICNLVICFDEPSNIKSFIQRRGRAREVSSTL 533
Query: 62 QILSQYPKSERYLQYNSPKINRLLQLLRRYNPDQR 96
++ Q SE +++ + RL++ RY + R
Sbjct: 534 YLMVQNASSESATDWHN--LERLMK--ERYEDEMR 564
>sp|A2R345|DCL21_ASPNC Dicer-like protein 2-1 OS=Aspergillus niger (strain CBS 513.88 /
FGSC A1513) GN=dcl2-1 PE=3 SV=2
Length = 1387
Score = 55.5 bits (132), Expect = 9e-08, Method: Composition-based stats.
Identities = 26/64 (40%), Positives = 39/64 (60%)
Query: 1 MDVQTMLSFNRGITNILVATDVLEEGIDIQSCNLVIKFDPPQHTRSYVQSKAFTVVRHKA 60
M T+ F G N+++ATDVLEEGIDI +C++V+ FD P + +S+VQ + R
Sbjct: 440 MQRDTLSEFRTGQKNLIIATDVLEEGIDISACSVVVCFDKPPNLKSFVQRRGRARHRQST 499
Query: 61 EQIL 64
I+
Sbjct: 500 YAIM 503
>sp|A4RHU9|DCL2_MAGO7 Dicer-like protein 2 OS=Magnaporthe oryzae (strain 70-15 / ATCC
MYA-4617 / FGSC 8958) GN=DCL2 PE=3 SV=3
Length = 1485
Score = 55.5 bits (132), Expect = 1e-07, Method: Composition-based stats.
Identities = 26/63 (41%), Positives = 38/63 (60%)
Query: 2 DVQTMLSFNRGITNILVATDVLEEGIDIQSCNLVIKFDPPQHTRSYVQSKAFTVVRHKAE 61
D+ + F G N+LVAT VLEEGID+ CNLVI FD P + +S++Q + +R
Sbjct: 486 DLLALEKFRSGAINLLVATSVLEEGIDVPVCNLVICFDMPANLKSFIQRRGRARMRESKL 545
Query: 62 QIL 64
++
Sbjct: 546 HLM 548
>sp|Q2VF19|DCL1_CRYPA Dicer-like protein 1 OS=Cryphonectria parasitica GN=DCL-1 PE=3 SV=1
Length = 1548
Score = 54.7 bits (130), Expect = 2e-07, Method: Composition-based stats.
Identities = 34/103 (33%), Positives = 53/103 (51%), Gaps = 13/103 (12%)
Query: 3 VQTMLSFNRGITNILVATDVLEEGIDIQSCNLVIKFDPPQHTRSYVQSKAFTVVRHKAEQ 62
++T+LSF +G TN + AT V EEG+DI CNL+I+FD + Y+QS R +A Q
Sbjct: 494 IRTILSFKKGNTNCIFATSVAEEGLDIPDCNLIIRFDICKTMIQYIQS------RGRARQ 547
Query: 63 ILSQYPK-------SERYLQYNSPKINRLLQLLRRYNPDQRTI 98
S Y R + + + + +LL+ P+ R +
Sbjct: 548 ADSTYIHLIEGGNGDHRRIMHQNAENEKLLRRFCNTQPEDRLL 590
>sp|A7LFZ6|DCL4_ORYSJ Endoribonuclease Dicer homolog 4 OS=Oryza sativa subsp. japonica
GN=DCL4 PE=2 SV=1
Length = 1657
Score = 53.1 bits (126), Expect = 4e-07, Method: Composition-based stats.
Identities = 23/44 (52%), Positives = 33/44 (75%)
Query: 9 FNRGITNILVATDVLEEGIDIQSCNLVIKFDPPQHTRSYVQSKA 52
F+ G N+LVAT V EEG+DIQ+C LV++FD P+ S++QS+
Sbjct: 473 FSSGEVNLLVATSVGEEGLDIQTCCLVVRFDLPETVASFIQSRG 516
>sp|A1C9M6|DCL2_ASPCL Dicer-like protein 2 OS=Aspergillus clavatus (strain ATCC 1007 /
CBS 513.65 / DSM 816 / NCTC 3887 / NRRL 1) GN=dcl2 PE=3
SV=1
Length = 1389
Score = 53.1 bits (126), Expect = 4e-07, Method: Composition-based stats.
Identities = 31/95 (32%), Positives = 52/95 (54%), Gaps = 5/95 (5%)
Query: 3 VQTMLSFNRGITNILVATDVLEEGIDIQSCNLVIKFDPPQHTRSYVQSKAFTVVRHKAEQ 62
+ T+ F G N+++ATDVLEEGIDI +C++V+ +D P + +S+VQ + R K
Sbjct: 441 LSTLDDFRSGHKNLIIATDVLEEGIDISACSVVVCYDKPPNLKSFVQRRG--RARQKQST 498
Query: 63 ILSQYPKSERYLQYNSPKINRLLQ-LLRRYNPDQR 96
+P + ++ K L Q ++ Y D+R
Sbjct: 499 YAIMFPAEDS--AFDLAKWQTLEQAMIEAYQDDER 531
>sp|Q0UL22|DCL2_PHANO Dicer-like protein 2 OS=Phaeosphaeria nodorum (strain SN15 / ATCC
MYA-4574 / FGSC 10173) GN=DCL2 PE=3 SV=2
Length = 1399
Score = 52.8 bits (125), Expect = 6e-07, Method: Composition-based stats.
Identities = 22/48 (45%), Positives = 36/48 (75%)
Query: 5 TMLSFNRGITNILVATDVLEEGIDIQSCNLVIKFDPPQHTRSYVQSKA 52
T+ +F G N+++AT VLEEGID+ SC+LV+ F+ P++ +S+VQ +
Sbjct: 441 TLENFRAGKLNLILATSVLEEGIDVSSCHLVVCFESPKNLKSFVQRRG 488
>sp|A1D9Z6|DCL2_NEOFI Dicer-like protein 2 OS=Neosartorya fischeri (strain ATCC 1020 /
DSM 3700 / FGSC A1164 / NRRL 181) GN=dcl2 PE=3 SV=1
Length = 1388
Score = 52.8 bits (125), Expect = 6e-07, Method: Composition-based stats.
Identities = 22/48 (45%), Positives = 35/48 (72%)
Query: 5 TMLSFNRGITNILVATDVLEEGIDIQSCNLVIKFDPPQHTRSYVQSKA 52
T+ F G N+++ATDVLEEGIDI +C++V+ +D P + +S+VQ +
Sbjct: 443 TLDDFRSGRKNLIIATDVLEEGIDISACSVVVCYDKPPNLKSFVQRRG 490
>sp|Q09884|DCR1_SCHPO Protein Dicer OS=Schizosaccharomyces pombe (strain 972 / ATCC
24843) GN=dcr1 PE=1 SV=1
Length = 1374
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/48 (50%), Positives = 32/48 (66%)
Query: 5 TMLSFNRGITNILVATDVLEEGIDIQSCNLVIKFDPPQHTRSYVQSKA 52
T+ F G N+L+AT V EEGID+ SCNLVI+F+ + YVQS+
Sbjct: 415 TLHKFKTGKYNVLIATAVAEEGIDVPSCNLVIRFNICRTVTQYVQSRG 462
>sp|Q2UNX5|DCL2_ASPOR Dicer-like protein 2 OS=Aspergillus oryzae (strain ATCC 42149 / RIB
40) GN=dcl2 PE=3 SV=1
Length = 1377
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 32/48 (66%)
Query: 5 TMLSFNRGITNILVATDVLEEGIDIQSCNLVIKFDPPQHTRSYVQSKA 52
TM F G N++V T VLEEGID+ +C +V+ FD P + +S++Q +
Sbjct: 440 TMDDFRSGRKNLIVTTSVLEEGIDVTACRVVVCFDKPANLKSFIQRRG 487
>sp|Q4WA22|DCL2_ASPFU Dicer-like protein 2 OS=Neosartorya fumigata (strain ATCC MYA-4609
/ Af293 / CBS 101355 / FGSC A1100) GN=dcl2 PE=3 SV=2
Length = 1388
Score = 51.2 bits (121), Expect = 2e-06, Method: Composition-based stats.
Identities = 20/48 (41%), Positives = 35/48 (72%)
Query: 5 TMLSFNRGITNILVATDVLEEGIDIQSCNLVIKFDPPQHTRSYVQSKA 52
T+ F G N+++ATDVLEEGID+ +C++V+ +D P + +S++Q +
Sbjct: 443 TLDDFRSGRKNLIIATDVLEEGIDLSACSVVVCYDKPPNLKSFIQRRG 490
>sp|Q7XD96|DCL3B_ORYSJ Endoribonuclease Dicer homolog 3b OS=Oryza sativa subsp. japonica
GN=DCL3B PE=2 SV=2
Length = 1637
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 23/48 (47%), Positives = 32/48 (66%)
Query: 5 TMLSFNRGITNILVATDVLEEGIDIQSCNLVIKFDPPQHTRSYVQSKA 52
T+ F G N+L TDV EEG+D+ +C+ VI+FD P+ SYVQS+
Sbjct: 462 TLDLFRAGKVNLLFTTDVTEEGVDVPNCSCVIRFDLPRTVCSYVQSRG 509
>sp|A4RKC3|DCL1_MAGO7 Dicer-like protein 1 OS=Magnaporthe oryzae (strain 70-15 / ATCC
MYA-4617 / FGSC 8958) GN=DCL1 PE=3 SV=2
Length = 1591
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 43/79 (54%)
Query: 4 QTMLSFNRGITNILVATDVLEEGIDIQSCNLVIKFDPPQHTRSYVQSKAFTVVRHKAEQI 63
QT+ F G N L AT + EEG+DI CN+VI+FD T Y+QS+ +R+
Sbjct: 512 QTVSRFRDGEINCLFATSIAEEGLDIPGCNVVIRFDLHGTTIQYIQSRGRARMRNSWFIH 571
Query: 64 LSQYPKSERYLQYNSPKIN 82
++++ E ++ ++N
Sbjct: 572 MTEFGNPEHNRRWFQDRVN 590
>sp|Q0UI93|DCL1_PHANO Dicer-like protein 1 OS=Phaeosphaeria nodorum (strain SN15 / ATCC
MYA-4574 / FGSC 10173) GN=DCL1 PE=3 SV=2
Length = 1522
Score = 49.7 bits (117), Expect = 5e-06, Method: Composition-based stats.
Identities = 27/62 (43%), Positives = 36/62 (58%), Gaps = 2/62 (3%)
Query: 3 VQTMLSFNRGITNILVATDVLEEGIDIQSCNLVIKFDPPQHTRSYVQSKAFTVVRHKAEQ 62
+ T+ F RG N L AT V EEG+DI CNLV++FD + YVQS+ RH+ +
Sbjct: 469 ILTLQKFRRGELNCLFATSVAEEGLDIPQCNLVVRFDLYRTMIGYVQSRG--RARHRNSK 526
Query: 63 IL 64
L
Sbjct: 527 YL 528
>sp|P84634|DCL4_ARATH Dicer-like protein 4 OS=Arabidopsis thaliana GN=DCL4 PE=1 SV=2
Length = 1702
Score = 49.3 bits (116), Expect = 8e-06, Method: Composition-based stats.
Identities = 21/38 (55%), Positives = 30/38 (78%)
Query: 15 NILVATDVLEEGIDIQSCNLVIKFDPPQHTRSYVQSKA 52
N+LVAT V EEG+DIQ+C LVI++D P+ S++QS+
Sbjct: 550 NLLVATKVGEEGLDIQTCCLVIRYDLPETVTSFIQSRG 587
>sp|Q8LMR2|DCL1_ORYSJ Endoribonuclease Dicer homolog 1 OS=Oryza sativa subsp. japonica
GN=DCL1 PE=3 SV=1
Length = 1883
Score = 49.3 bits (116), Expect = 8e-06, Method: Composition-based stats.
Identities = 22/48 (45%), Positives = 32/48 (66%)
Query: 5 TMLSFNRGITNILVATDVLEEGIDIQSCNLVIKFDPPQHTRSYVQSKA 52
T+ F G +LVAT V EEG+DI+ CN+VI+FD + +Y+QS+
Sbjct: 692 TISKFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRG 739
>sp|Q1DKI1|DCL1_COCIM Dicer-like protein 1 OS=Coccidioides immitis (strain RS) GN=DCL1
PE=3 SV=3
Length = 1500
Score = 49.3 bits (116), Expect = 8e-06, Method: Composition-based stats.
Identities = 22/50 (44%), Positives = 31/50 (62%)
Query: 3 VQTMLSFNRGITNILVATDVLEEGIDIQSCNLVIKFDPPQHTRSYVQSKA 52
V ++SF +G N L AT V EEG+DI CNL+++FD Y+QS+
Sbjct: 495 VLAVVSFRKGEVNCLFATSVAEEGLDIPDCNLIVRFDLASTLTQYIQSRG 544
>sp|Q0CW42|DCL1_ASPTN Dicer-like protein 1 OS=Aspergillus terreus (strain NIH 2624 / FGSC
A1156) GN=dcl1 PE=3 SV=2
Length = 1519
Score = 48.9 bits (115), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 24/50 (48%), Positives = 31/50 (62%)
Query: 3 VQTMLSFNRGITNILVATDVLEEGIDIQSCNLVIKFDPPQHTRSYVQSKA 52
+ TM+ F G N L AT V EEG+DI CNLV++FD + YVQS+
Sbjct: 504 ILTMVRFRTGEINCLFATAVAEEGLDIPDCNLVVRFDLYKTLIQYVQSRG 553
>sp|A2RAF3|DCL1_ASPNC Dicer-like protein 1 OS=Aspergillus niger (strain CBS 513.88 / FGSC
A1513) GN=dcl1 PE=3 SV=2
Length = 1525
Score = 48.9 bits (115), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 23/48 (47%), Positives = 30/48 (62%)
Query: 5 TMLSFNRGITNILVATDVLEEGIDIQSCNLVIKFDPPQHTRSYVQSKA 52
+++ F G N L AT V EEG+DI CNLV++FD Q YVQS+
Sbjct: 514 SLVKFRTGEINCLFATSVAEEGLDIPDCNLVVRFDLYQTLIQYVQSRG 561
>sp|P0C5H7|DCL2_EMENI Dicer-like protein 2 OS=Emericella nidulans (strain FGSC A4 / ATCC
38163 / CBS 112.46 / NRRL 194 / M139) GN=dcl2 PE=3 SV=1
Length = 1429
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 35/52 (67%)
Query: 1 MDVQTMLSFNRGITNILVATDVLEEGIDIQSCNLVIKFDPPQHTRSYVQSKA 52
M T+ F G N++VATDVL+EGID+ +C++VI ++ P+ S++Q +
Sbjct: 403 MQPDTLDDFRYGRKNLIVATDVLKEGIDVSACSVVICYNIPKGFESFIQRRG 454
>sp|Q9SP32|DCL1_ARATH Endoribonuclease Dicer homolog 1 OS=Arabidopsis thaliana GN=DCL1
PE=1 SV=2
Length = 1909
Score = 48.1 bits (113), Expect = 1e-05, Method: Composition-based stats.
Identities = 21/48 (43%), Positives = 32/48 (66%)
Query: 5 TMLSFNRGITNILVATDVLEEGIDIQSCNLVIKFDPPQHTRSYVQSKA 52
T+ F G +LVAT V EEG+DI+ CN+V++FD + +Y+QS+
Sbjct: 715 TISKFRDGHVTLLVATSVAEEGLDIRQCNVVMRFDLAKTVLAYIQSRG 762
>sp|A1CBC9|DCL1_ASPCL Dicer-like protein 1 OS=Aspergillus clavatus (strain ATCC 1007 /
CBS 513.65 / DSM 816 / NCTC 3887 / NRRL 1) GN=dcl1 PE=3
SV=2
Length = 1534
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 29/48 (60%)
Query: 5 TMLSFNRGITNILVATDVLEEGIDIQSCNLVIKFDPPQHTRSYVQSKA 52
++ F +G N L AT V EEG+DI CNLV++FD YVQS+
Sbjct: 520 ALVKFRKGEINCLFATSVAEEGLDIPDCNLVVRFDLYHTLIQYVQSRG 567
>sp|Q2U6C4|DCL1_ASPOR Dicer-like protein 1 OS=Aspergillus oryzae (strain ATCC 42149 / RIB
40) GN=dcl1 PE=3 SV=2
Length = 1523
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 41/83 (49%), Gaps = 8/83 (9%)
Query: 5 TMLSFNRGITNILVATDVLEEGIDIQSCNLVIKFDPPQHTRSYVQSKAFTVVRHKAEQIL 64
++ F G N L AT V EEG+DI CNLV++FD YVQS+ RH +
Sbjct: 512 ALVKFRSGEINCLFATSVAEEGLDIPDCNLVVRFDLYNTLIQYVQSRG--RARHSSSTYA 569
Query: 65 SQYPKSERYLQYNSPKINRLLQL 87
S + YN+ RL+++
Sbjct: 570 SMIER------YNADHAARLVEV 586
>sp|Q4WVE3|DCL1_ASPFU Dicer-like protein 1 OS=Neosartorya fumigata (strain ATCC MYA-4609
/ Af293 / CBS 101355 / FGSC A1100) GN=dcl1 PE=3 SV=3
Length = 1537
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/48 (47%), Positives = 29/48 (60%)
Query: 5 TMLSFNRGITNILVATDVLEEGIDIQSCNLVIKFDPPQHTRSYVQSKA 52
++ F G N L AT V EEG+DI CNLVI+FD + YVQS+
Sbjct: 523 ALVKFRTGEINCLFATSVAEEGLDIPDCNLVIRFDLYRTLIQYVQSRG 570
>sp|Q5ADL0|PRP5_CANAL Pre-mRNA-processing ATP-dependent RNA helicase PRP5 OS=Candida
albicans (strain SC5314 / ATCC MYA-2876) GN=PRP5 PE=3
SV=1
Length = 884
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 29/46 (63%), Gaps = 1/46 (2%)
Query: 3 VQTMLSFNRGITNILVATDVLEEGIDIQSCNLVIKFDPPQHTRSYV 48
++ S + GI NIL+AT + G+D+++ LVI FDPP H YV
Sbjct: 597 IKEFASMDSGI-NILIATSIAARGLDVRNLGLVINFDPPNHMEDYV 641
>sp|A2QX45|DCL22_ASPNC Dicer-like protein 2-2 OS=Aspergillus niger (strain CBS 513.88 /
FGSC A1513) GN=dcl2-2 PE=3 SV=2
Length = 1362
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 32/49 (65%)
Query: 4 QTMLSFNRGITNILVATDVLEEGIDIQSCNLVIKFDPPQHTRSYVQSKA 52
+T+ F +G N+++ TD LEEGID+ +CN V+ F+ +S++Q +
Sbjct: 413 ETLEKFRQGSLNLIITTDALEEGIDVPACNTVLNFNCQLSLKSFIQRRG 461
>sp|Q96C10|DHX58_HUMAN Probable ATP-dependent RNA helicase DHX58 OS=Homo sapiens GN=DHX58
PE=1 SV=1
Length = 678
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 43/80 (53%), Gaps = 4/80 (5%)
Query: 9 FNRGITNILVATDVLEEGIDIQSCNLVIKFDPPQHTRSYVQSKAFTVVRHKAEQILSQYP 68
F G N+LVAT V EEG+DI CN+V+++ + S VQ++ R +A+Q + +
Sbjct: 427 FQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARG----RARADQSVYAFV 482
Query: 69 KSERYLQYNSPKINRLLQLL 88
+E + IN L+ L
Sbjct: 483 ATEGSRELKRELINEALETL 502
>sp|A1DE13|DCL1_NEOFI Dicer-like protein 1 OS=Neosartorya fischeri (strain ATCC 1020 /
DSM 3700 / FGSC A1164 / NRRL 181) GN=dcl1 PE=3 SV=1
Length = 1538
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 29/48 (60%)
Query: 5 TMLSFNRGITNILVATDVLEEGIDIQSCNLVIKFDPPQHTRSYVQSKA 52
++ F G N L AT V EEG+DI CNLV++FD + YVQS+
Sbjct: 524 ALVKFRTGEINCLFATSVAEEGLDIPDCNLVVRFDLYRTLIQYVQSRG 571
>sp|Q1DW80|DCL2_COCIM Dicer-like protein 2 OS=Coccidioides immitis (strain RS) GN=DCL2
PE=3 SV=3
Length = 1435
Score = 46.6 bits (109), Expect = 5e-05, Method: Composition-based stats.
Identities = 20/41 (48%), Positives = 30/41 (73%)
Query: 12 GITNILVATDVLEEGIDIQSCNLVIKFDPPQHTRSYVQSKA 52
G ++++AT VLEEGID+ C+LVI FD P+ RS++Q +
Sbjct: 478 GKKDLIIATAVLEEGIDVPICDLVICFDLPKDLRSFIQRRG 518
>sp|A3LS22|RRP3_PICST ATP-dependent rRNA helicase RRP3 OS=Scheffersomyces stipitis
(strain ATCC 58785 / CBS 6054 / NBRC 10063 / NRRL
Y-11545) GN=RRP3 PE=3 SV=3
Length = 484
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 27/41 (65%)
Query: 9 FNRGITNILVATDVLEEGIDIQSCNLVIKFDPPQHTRSYVQ 49
F G NIL+ATDV G+DI S ++VI +D P +++YV
Sbjct: 356 FKSGTANILIATDVAARGLDIPSVDVVINYDIPTDSKAYVH 396
>sp|Q54VT4|DDX47_DICDI Probable ATP-dependent RNA helicase ddx47 OS=Dictyostelium
discoideum GN=ddx47 PE=3 SV=1
Length = 546
Score = 45.8 bits (107), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 20/41 (48%), Positives = 28/41 (68%)
Query: 9 FNRGITNILVATDVLEEGIDIQSCNLVIKFDPPQHTRSYVQ 49
F +G +ILVATDV G+DI S +LVI +D P +++ YV
Sbjct: 404 FKQGTKSILVATDVAARGLDIPSVDLVINYDVPTNSKEYVH 444
>sp|Q2H0G2|DCL1_CHAGB Dicer-like protein 1 OS=Chaetomium globosum (strain ATCC 6205 / CBS
148.51 / DSM 1962 / NBRC 6347 / NRRL 1970) GN=DCL1 PE=3
SV=2
Length = 1607
Score = 45.4 bits (106), Expect = 1e-04, Method: Composition-based stats.
Identities = 20/50 (40%), Positives = 31/50 (62%)
Query: 3 VQTMLSFNRGITNILVATDVLEEGIDIQSCNLVIKFDPPQHTRSYVQSKA 52
V T++ F +G N + AT V EEG+DI CN++I++D Y+QS+
Sbjct: 535 VLTIIKFKKGELNCIFATSVAEEGLDIPDCNVIIRYDLNNTLIQYIQSRG 584
>sp|Q99J87|DHX58_MOUSE Probable ATP-dependent RNA helicase DHX58 OS=Mus musculus GN=Dhx58
PE=1 SV=2
Length = 678
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 49/95 (51%), Gaps = 12/95 (12%)
Query: 9 FNRGITNILVATDVLEEGIDIQSCNLVIKFDPPQHTRSYVQSKAFTVVRHKAEQILSQYP 68
F GI ++LVAT V EEG+DI CN+V+++ + S VQ++ R +A Q + +
Sbjct: 427 FRDGILSLLVATSVAEEGLDIAQCNVVVRYGLLTNEISMVQARG----RARAGQSVYSFL 482
Query: 69 KSERYLQYNSPKINRLLQLL--------RRYNPDQ 95
+E + N L++L ++ +PD+
Sbjct: 483 ATEGSREMKRELTNEALEVLMEKAVAAVQKMDPDE 517
>sp|Q9Y7C4|ROK1_CANAL ATP-dependent RNA helicase CHR1 OS=Candida albicans (strain SC5314
/ ATCC MYA-2876) GN=CHR1 PE=3 SV=1
Length = 578
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 34/63 (53%)
Query: 9 FNRGITNILVATDVLEEGIDIQSCNLVIKFDPPQHTRSYVQSKAFTVVRHKAEQILSQYP 68
F G +L+ TDVL G+D + NLVI +D PQ ++YV T KA + ++ +
Sbjct: 424 FKNGDIWVLITTDVLARGVDFKGVNLVINYDVPQSAQAYVHRIGRTGRGGKAGKAVTFFT 483
Query: 69 KSE 71
K +
Sbjct: 484 KED 486
>sp|Q2NL08|DDX55_BOVIN ATP-dependent RNA helicase DDX55 OS=Bos taurus GN=DDX55 PE=2 SV=1
Length = 601
Score = 45.1 bits (105), Expect = 1e-04, Method: Composition-based stats.
Identities = 22/74 (29%), Positives = 38/74 (51%), Gaps = 1/74 (1%)
Query: 4 QTMLSFNRGITNILVATDVLEEGIDIQSCNLVIKFDPPQHTRSYVQSKAFTV-VRHKAEQ 62
+ + F + + ILV TDV+ GIDI N V+++DPP + ++V T + H
Sbjct: 309 KIFMEFRKLQSGILVCTDVMARGIDIPEVNWVLQYDPPSNASAFVHRCGRTARIGHGGSA 368
Query: 63 ILSQYPKSERYLQY 76
++ P E Y+ +
Sbjct: 369 LVFLLPMEESYISF 382
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.324 0.137 0.394
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 36,414,861
Number of Sequences: 539616
Number of extensions: 1230032
Number of successful extensions: 6249
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 1160
Number of HSP's successfully gapped in prelim test: 26
Number of HSP's that attempted gapping in prelim test: 5035
Number of HSP's gapped (non-prelim): 1239
length of query: 109
length of database: 191,569,459
effective HSP length: 77
effective length of query: 32
effective length of database: 150,019,027
effective search space: 4800608864
effective search space used: 4800608864
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 55 (25.8 bits)