Query psy16582
Match_columns 109
No_of_seqs 137 out of 1078
Neff 8.2
Searched_HMMs 46136
Date Fri Aug 16 16:40:25 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16582.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/16582hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0331|consensus 99.9 1.8E-24 3.9E-29 166.4 8.3 88 1-94 379-466 (519)
2 KOG0330|consensus 99.9 1.2E-23 2.7E-28 156.5 6.6 68 2-69 339-406 (476)
3 KOG0335|consensus 99.9 6.6E-23 1.4E-27 156.2 8.4 95 1-101 375-469 (482)
4 KOG0333|consensus 99.9 6E-23 1.3E-27 157.3 6.7 73 1-73 555-627 (673)
5 KOG0336|consensus 99.9 1.2E-22 2.6E-27 152.7 8.0 89 1-95 503-591 (629)
6 KOG0328|consensus 99.9 9.9E-23 2.2E-27 147.2 6.7 72 1-72 304-375 (400)
7 KOG0345|consensus 99.9 1.2E-22 2.6E-27 153.9 6.8 107 1-107 295-415 (567)
8 PLN00206 DEAD-box ATP-dependen 99.9 3.9E-22 8.5E-27 154.9 9.8 71 1-71 406-476 (518)
9 PTZ00110 helicase; Provisional 99.9 5.3E-22 1.1E-26 155.0 10.3 71 1-71 415-485 (545)
10 COG0513 SrmB Superfamily II DN 99.9 1.6E-22 3.6E-27 157.0 6.4 69 1-69 311-379 (513)
11 PRK04837 ATP-dependent RNA hel 99.9 1.7E-22 3.7E-27 153.2 5.8 72 1-72 293-364 (423)
12 KOG0340|consensus 99.9 3.2E-22 6.9E-27 147.7 6.7 69 1-69 292-360 (442)
13 KOG0341|consensus 99.9 9.1E-22 2E-26 147.2 6.9 93 1-98 459-551 (610)
14 PRK01297 ATP-dependent RNA hel 99.8 4.2E-21 9.1E-26 147.5 8.4 73 1-73 373-445 (475)
15 PRK11776 ATP-dependent RNA hel 99.8 3.3E-21 7E-26 147.5 7.6 72 1-72 280-351 (460)
16 PRK10590 ATP-dependent RNA hel 99.8 4.2E-21 9.1E-26 147.0 7.6 71 1-71 283-353 (456)
17 KOG0342|consensus 99.8 4.6E-21 9.9E-26 145.7 7.0 74 1-74 368-441 (543)
18 PRK11192 ATP-dependent RNA hel 99.8 9.3E-21 2E-25 143.9 7.8 72 1-72 283-354 (434)
19 KOG0338|consensus 99.8 1.7E-20 3.6E-25 143.8 8.0 72 2-73 465-536 (691)
20 PRK04537 ATP-dependent RNA hel 99.8 1.2E-20 2.7E-25 148.1 7.4 72 1-72 295-366 (572)
21 PRK11634 ATP-dependent RNA hel 99.8 2.1E-20 4.6E-25 148.1 8.2 71 1-71 283-353 (629)
22 KOG0344|consensus 99.8 3.6E-20 7.9E-25 143.0 8.6 71 1-71 426-496 (593)
23 PTZ00424 helicase 45; Provisio 99.8 2E-20 4.4E-25 140.2 6.1 72 1-72 305-376 (401)
24 KOG0326|consensus 99.8 3.4E-20 7.5E-25 135.9 6.3 77 1-77 360-436 (459)
25 TIGR00614 recQ_fam ATP-depende 99.8 4.9E-20 1.1E-24 141.7 7.5 70 1-70 264-333 (470)
26 KOG0332|consensus 99.8 3.6E-20 7.8E-25 137.7 6.3 70 1-70 368-443 (477)
27 KOG0350|consensus 99.8 5.9E-20 1.3E-24 140.3 6.7 68 2-69 472-539 (620)
28 COG1111 MPH1 ERCC4-like helica 99.8 1.6E-19 3.5E-24 137.9 9.0 92 1-93 413-507 (542)
29 KOG0348|consensus 99.8 6.7E-20 1.5E-24 141.0 6.7 83 1-83 485-568 (708)
30 PF00271 Helicase_C: Helicase 99.8 1E-19 2.2E-24 108.4 5.9 58 1-58 21-78 (78)
31 TIGR03817 DECH_helic helicase/ 99.8 1.2E-19 2.5E-24 146.1 8.0 68 1-68 317-384 (742)
32 PLN03137 ATP-dependent DNA hel 99.8 1.4E-19 3E-24 149.0 7.5 69 1-69 718-786 (1195)
33 PRK11057 ATP-dependent DNA hel 99.8 1.6E-19 3.6E-24 142.5 7.6 71 1-71 274-344 (607)
34 TIGR01389 recQ ATP-dependent D 99.8 1.6E-18 3.4E-23 136.4 7.6 71 1-71 262-332 (591)
35 KOG0354|consensus 99.7 1.3E-17 2.9E-22 132.5 8.9 68 1-69 462-529 (746)
36 COG0514 RecQ Superfamily II DN 99.7 1.2E-17 2.6E-22 130.7 8.2 71 1-71 268-338 (590)
37 KOG0343|consensus 99.7 1.5E-17 3.4E-22 128.6 7.0 73 2-74 354-427 (758)
38 KOG0347|consensus 99.7 3.8E-18 8.3E-23 131.8 3.6 70 2-71 502-571 (731)
39 TIGR00580 mfd transcription-re 99.7 3.7E-17 8.1E-22 133.9 9.1 71 1-71 700-771 (926)
40 KOG0327|consensus 99.7 2.7E-17 5.9E-22 122.2 6.5 72 1-72 301-372 (397)
41 PRK10917 ATP-dependent DNA hel 99.7 5.9E-17 1.3E-21 129.5 8.8 68 1-68 519-587 (681)
42 TIGR00643 recG ATP-dependent D 99.7 6.2E-17 1.3E-21 128.4 8.6 67 1-67 496-563 (630)
43 PRK13767 ATP-dependent helicas 99.7 8.1E-17 1.8E-21 131.6 7.5 65 1-65 328-395 (876)
44 KOG0346|consensus 99.7 1.2E-16 2.5E-21 121.1 6.6 74 2-75 307-415 (569)
45 PRK10689 transcription-repair 99.7 2.7E-16 5.9E-21 131.1 9.0 70 1-70 849-919 (1147)
46 KOG0334|consensus 99.7 1.9E-16 4.1E-21 128.5 7.7 74 1-74 651-725 (997)
47 PRK04914 ATP-dependent helicas 99.7 1.8E-16 3.8E-21 130.1 7.4 67 1-67 532-600 (956)
48 PRK13766 Hef nuclease; Provisi 99.6 8E-16 1.7E-20 124.1 9.9 67 1-67 411-477 (773)
49 TIGR00631 uvrb excinuclease AB 99.6 6.4E-16 1.4E-20 123.1 9.1 71 1-72 480-555 (655)
50 smart00490 HELICc helicase sup 99.6 3.5E-16 7.7E-21 92.4 5.7 58 1-58 25-82 (82)
51 PRK12898 secA preprotein trans 99.6 5E-16 1.1E-20 123.2 7.7 74 2-75 510-591 (656)
52 PRK09751 putative ATP-dependen 99.6 9.5E-16 2.1E-20 129.6 8.0 58 1-58 315-372 (1490)
53 PHA02653 RNA helicase NPH-II; 99.6 7.1E-16 1.5E-20 123.1 6.2 68 3-71 435-515 (675)
54 PRK05298 excinuclease ABC subu 99.6 1.5E-15 3.3E-20 121.0 7.8 68 1-69 484-556 (652)
55 KOG4284|consensus 99.6 1.1E-15 2.3E-20 120.3 6.4 72 1-72 310-381 (980)
56 KOG0339|consensus 99.6 2.7E-15 5.9E-20 115.5 7.6 87 1-94 506-593 (731)
57 PRK09200 preprotein translocas 99.6 5.2E-15 1.1E-19 119.4 8.2 63 13-75 476-546 (790)
58 cd00079 HELICc Helicase superf 99.6 3.5E-15 7.5E-20 95.2 5.5 65 1-65 66-130 (131)
59 TIGR01970 DEAH_box_HrpB ATP-de 99.6 2.5E-15 5.4E-20 122.1 5.6 70 1-71 250-337 (819)
60 TIGR01587 cas3_core CRISPR-ass 99.6 9E-15 1.9E-19 108.5 8.0 61 4-67 269-333 (358)
61 PRK02362 ski2-like helicase; P 99.5 1.6E-14 3.5E-19 116.3 7.2 69 1-69 317-396 (737)
62 PRK11664 ATP-dependent RNA hel 99.5 6.5E-15 1.4E-19 119.7 4.0 69 1-70 253-339 (812)
63 TIGR00963 secA preprotein tran 99.5 6E-14 1.3E-18 112.4 9.2 74 1-74 441-521 (745)
64 TIGR00603 rad25 DNA repair hel 99.5 5.8E-14 1.3E-18 112.6 8.6 61 1-61 529-591 (732)
65 KOG0349|consensus 99.5 2.6E-14 5.7E-19 108.8 4.6 69 1-69 546-614 (725)
66 PHA02558 uvsW UvsW helicase; P 99.5 1.3E-13 2.8E-18 107.1 7.3 60 1-60 382-442 (501)
67 TIGR03714 secA2 accessory Sec 99.5 1.6E-13 3.4E-18 110.4 7.8 62 13-75 472-542 (762)
68 KOG0351|consensus 99.5 1.2E-13 2.5E-18 113.3 6.5 70 1-70 523-592 (941)
69 COG1200 RecG RecG-like helicas 99.4 7.2E-13 1.6E-17 104.7 8.2 70 1-70 521-591 (677)
70 KOG0352|consensus 99.4 3.7E-13 7.9E-18 102.3 6.2 71 1-71 293-363 (641)
71 PRK00254 ski2-like helicase; P 99.4 3.4E-13 7.3E-18 108.5 5.7 68 1-68 309-386 (720)
72 PRK05580 primosome assembly pr 99.4 6.6E-13 1.4E-17 106.4 6.9 68 2-69 469-548 (679)
73 PRK12906 secA preprotein trans 99.4 2E-12 4.3E-17 104.5 8.6 71 5-75 480-558 (796)
74 TIGR02621 cas3_GSU0051 CRISPR- 99.4 1.3E-12 2.8E-17 106.2 7.4 54 4-60 316-380 (844)
75 PRK12900 secA preprotein trans 99.4 1.5E-12 3.3E-17 106.6 7.4 75 1-75 634-716 (1025)
76 KOG0329|consensus 99.4 2.5E-13 5.5E-18 97.7 2.6 54 17-70 302-355 (387)
77 PRK11131 ATP-dependent RNA hel 99.3 7.5E-13 1.6E-17 111.1 4.6 66 2-70 328-411 (1294)
78 PRK01172 ski2-like helicase; P 99.3 1.6E-12 3.4E-17 104.0 6.1 65 1-66 299-374 (674)
79 KOG0337|consensus 99.3 1.6E-13 3.4E-18 103.8 0.2 68 4-71 302-369 (529)
80 TIGR00595 priA primosomal prot 99.3 3.5E-12 7.5E-17 99.4 7.4 65 3-67 302-378 (505)
81 COG1197 Mfd Transcription-repa 99.3 6.2E-12 1.4E-16 104.0 8.3 72 2-73 844-916 (1139)
82 COG1201 Lhr Lhr-like helicases 99.3 5.7E-12 1.2E-16 102.1 6.8 75 2-76 293-368 (814)
83 TIGR01967 DEAH_box_HrpA ATP-de 99.3 2.9E-12 6.2E-17 107.7 4.6 66 2-70 321-404 (1283)
84 PRK14701 reverse gyrase; Provi 99.2 1.6E-11 3.4E-16 105.5 4.5 63 2-64 367-450 (1638)
85 COG1061 SSL2 DNA or RNA helica 99.2 5.9E-11 1.3E-15 91.2 7.2 56 1-56 320-375 (442)
86 TIGR03158 cas3_cyano CRISPR-as 99.1 4.7E-11 1E-15 89.4 4.3 43 10-55 315-357 (357)
87 COG4098 comFA Superfamily II D 99.1 3.9E-10 8.6E-15 83.9 8.6 65 2-66 344-412 (441)
88 COG0556 UvrB Helicase subunit 99.1 2.4E-10 5.2E-15 88.9 6.8 76 1-77 484-564 (663)
89 PRK09401 reverse gyrase; Revie 99.1 1E-10 2.2E-15 98.4 4.5 52 4-55 367-429 (1176)
90 PRK11448 hsdR type I restricti 99.0 1.2E-09 2.5E-14 91.7 7.8 56 2-57 744-800 (1123)
91 PLN03142 Probable chromatin-re 98.9 4.8E-09 1E-13 87.4 8.9 63 1-63 525-590 (1033)
92 COG1205 Distinct helicase fami 98.9 8.4E-10 1.8E-14 90.5 4.0 67 1-67 352-419 (851)
93 PRK09694 helicase Cas3; Provis 98.9 2.3E-09 5E-14 88.1 6.0 54 3-59 607-664 (878)
94 KOG0353|consensus 98.9 1.7E-09 3.7E-14 81.9 4.1 64 6-69 360-466 (695)
95 TIGR01054 rgy reverse gyrase. 98.8 8.5E-09 1.8E-13 87.0 5.0 41 3-43 365-410 (1171)
96 KOG4150|consensus 98.8 1.6E-08 3.4E-13 79.9 6.0 64 2-65 572-635 (1034)
97 COG1198 PriA Primosomal protei 98.6 5.4E-08 1.2E-12 78.7 5.7 69 3-71 524-604 (730)
98 PRK12904 preprotein translocas 98.6 2E-07 4.4E-12 76.2 8.8 74 1-74 466-577 (830)
99 COG1204 Superfamily II helicas 98.6 9.9E-08 2.1E-12 77.8 5.8 57 2-58 329-394 (766)
100 PRK13107 preprotein translocas 98.3 2.4E-06 5.2E-11 70.4 7.1 72 1-74 487-595 (908)
101 PRK13104 secA preprotein trans 98.3 3E-06 6.6E-11 69.8 7.6 72 1-74 482-591 (896)
102 COG1202 Superfamily II helicas 98.3 1.6E-06 3.5E-11 68.7 5.1 78 1-78 478-561 (830)
103 KOG0926|consensus 98.1 9.9E-07 2.2E-11 71.9 2.0 65 2-67 619-701 (1172)
104 COG1643 HrpA HrpA-like helicas 98.1 1.9E-06 4E-11 70.9 3.2 67 2-69 302-386 (845)
105 KOG0949|consensus 98.1 4.9E-06 1.1E-10 69.0 5.2 63 7-69 982-1047(1330)
106 KOG0950|consensus 98.1 8.6E-06 1.9E-10 67.2 6.5 59 1-59 536-598 (1008)
107 KOG0953|consensus 98.0 1.4E-05 3E-10 63.1 6.3 67 6-73 400-480 (700)
108 COG1203 CRISPR-associated heli 98.0 9.1E-06 2E-10 66.2 5.5 54 10-66 491-546 (733)
109 KOG0920|consensus 98.0 2.3E-06 5E-11 70.7 1.1 68 1-69 458-543 (924)
110 KOG0947|consensus 97.9 1.6E-05 3.5E-10 65.9 4.7 62 8-69 651-722 (1248)
111 KOG0390|consensus 97.9 4.4E-05 9.5E-10 62.3 6.6 63 1-63 633-698 (776)
112 KOG0922|consensus 97.9 1E-05 2.2E-10 64.6 2.9 67 2-69 305-389 (674)
113 TIGR01407 dinG_rel DnaQ family 97.8 0.0001 2.3E-09 60.9 8.0 66 1-66 713-811 (850)
114 PRK12903 secA preprotein trans 97.8 8.6E-05 1.9E-09 61.4 6.8 65 10-74 470-543 (925)
115 KOG0384|consensus 97.8 0.00017 3.8E-09 61.0 8.5 80 2-81 738-825 (1373)
116 KOG0924|consensus 97.7 1.7E-05 3.7E-10 64.1 2.2 67 2-69 612-696 (1042)
117 KOG0385|consensus 97.7 0.00012 2.6E-09 59.8 6.9 65 1-65 525-592 (971)
118 PF13307 Helicase_C_2: Helicas 97.7 0.00015 3.3E-09 48.9 6.4 68 2-69 48-149 (167)
119 KOG0923|consensus 97.7 1.7E-05 3.7E-10 63.8 1.9 65 2-67 521-603 (902)
120 TIGR00348 hsdR type I site-spe 97.6 0.00028 6E-09 57.1 7.5 53 3-56 580-633 (667)
121 PF13871 Helicase_C_4: Helicas 97.5 0.00057 1.2E-08 50.0 7.5 57 5-61 53-117 (278)
122 KOG0952|consensus 97.5 0.00035 7.7E-09 58.6 6.8 68 2-69 411-490 (1230)
123 KOG0951|consensus 97.5 0.00027 5.9E-09 60.3 6.0 57 2-58 622-688 (1674)
124 smart00492 HELICc3 helicase su 97.4 0.00052 1.1E-08 45.4 6.0 40 2-41 36-78 (141)
125 KOG0948|consensus 97.4 2.7E-05 5.8E-10 63.4 -0.2 62 8-69 467-538 (1041)
126 KOG0387|consensus 97.4 0.00025 5.4E-09 58.0 5.2 61 2-62 586-648 (923)
127 PRK12326 preprotein translocas 97.4 0.00037 7.9E-09 56.9 5.7 65 10-74 471-551 (764)
128 COG0553 HepA Superfamily II DN 97.4 0.001 2.2E-08 54.2 8.0 63 1-63 749-813 (866)
129 PRK12899 secA preprotein trans 97.3 0.00096 2.1E-08 55.7 7.5 65 10-74 612-685 (970)
130 smart00491 HELICc2 helicase su 97.3 0.0015 3.3E-08 43.1 7.0 40 3-42 34-80 (142)
131 KOG0701|consensus 97.3 6.7E-05 1.4E-09 65.1 0.2 58 2-59 343-400 (1606)
132 COG4581 Superfamily II RNA hel 97.2 0.00062 1.3E-08 57.3 5.5 64 3-66 460-533 (1041)
133 PRK12901 secA preprotein trans 97.2 0.0018 4E-08 54.6 7.6 63 11-73 673-744 (1112)
134 COG4889 Predicted helicase [Ge 97.1 0.0004 8.8E-09 57.9 3.1 51 8-58 523-573 (1518)
135 PRK13103 secA preprotein trans 97.1 0.0033 7.1E-08 52.5 8.3 77 10-86 493-608 (913)
136 KOG0392|consensus 97.1 0.0016 3.4E-08 55.7 6.1 63 1-63 1381-1445(1549)
137 PRK08074 bifunctional ATP-depe 97.0 0.0034 7.5E-08 52.6 7.9 65 2-66 793-890 (928)
138 PRK14873 primosome assembly pr 96.9 0.0033 7.2E-08 51.1 6.7 64 2-71 461-540 (665)
139 COG1199 DinG Rad3-related DNA 96.9 0.0029 6.2E-08 50.9 6.2 65 2-66 516-614 (654)
140 PRK07246 bifunctional ATP-depe 96.7 0.0087 1.9E-07 49.7 7.7 66 2-67 683-781 (820)
141 PRK11747 dinG ATP-dependent DN 96.7 0.009 1.9E-07 48.8 7.6 40 2-41 570-615 (697)
142 KOG0389|consensus 96.5 0.0066 1.4E-07 50.0 5.9 68 1-68 815-886 (941)
143 KOG0925|consensus 96.5 0.0036 7.8E-08 49.4 3.7 55 14-69 314-386 (699)
144 TIGR00596 rad1 DNA repair prot 96.4 0.011 2.4E-07 49.1 6.4 47 18-67 431-511 (814)
145 KOG1123|consensus 96.3 0.02 4.2E-07 45.6 6.8 58 1-58 576-635 (776)
146 TIGR00604 rad3 DNA repair heli 96.2 0.024 5.2E-07 46.3 7.5 66 2-67 567-671 (705)
147 KOG0388|consensus 96.0 0.022 4.7E-07 47.0 6.0 61 2-62 1083-1144(1185)
148 TIGR02562 cas3_yersinia CRISPR 95.9 0.018 4E-07 48.9 5.3 45 12-59 837-881 (1110)
149 COG1110 Reverse gyrase [DNA re 95.7 0.01 2.2E-07 50.2 3.3 41 2-42 372-417 (1187)
150 CHL00122 secA preprotein trans 95.3 0.084 1.8E-06 44.2 7.3 27 48-74 609-635 (870)
151 KOG4439|consensus 95.2 0.063 1.4E-06 44.1 5.9 63 1-63 784-849 (901)
152 TIGR03117 cas_csf4 CRISPR-asso 95.0 0.16 3.5E-06 41.3 7.9 68 2-69 507-616 (636)
153 COG4096 HsdR Type I site-speci 95.0 0.031 6.7E-07 46.4 3.9 53 4-56 470-524 (875)
154 KOG1513|consensus 94.3 0.053 1.1E-06 45.4 3.5 53 7-59 851-911 (1300)
155 KOG0391|consensus 94.1 0.18 4E-06 43.9 6.4 66 2-67 1315-1384(1958)
156 KOG1000|consensus 94.1 0.084 1.8E-06 42.0 4.2 63 1-63 530-594 (689)
157 KOG1015|consensus 93.5 0.11 2.4E-06 44.3 4.2 60 1-60 1202-1265(1567)
158 PF10593 Z1: Z1 domain; Inter 93.2 0.4 8.7E-06 34.4 6.2 80 14-93 136-217 (239)
159 KOG0386|consensus 92.8 0.22 4.7E-06 42.4 4.9 60 1-60 764-826 (1157)
160 KOG1002|consensus 92.0 0.73 1.6E-05 37.0 6.5 66 2-67 677-746 (791)
161 PF06862 DUF1253: Protein of u 88.9 4.9 0.00011 31.6 8.7 67 3-69 340-414 (442)
162 COG0653 SecA Preprotein transl 88.4 1.1 2.4E-05 37.6 5.1 63 11-73 474-548 (822)
163 KOG1016|consensus 83.4 1.4 3E-05 37.4 3.3 62 1-62 775-839 (1387)
164 PF02399 Herpes_ori_bp: Origin 80.2 3.7 8.1E-05 34.6 4.7 55 12-66 325-385 (824)
165 PRK12902 secA preprotein trans 80.2 1.9 4.1E-05 36.7 3.1 37 48-84 666-703 (939)
166 COG1197 Mfd Transcription-repa 79.2 2.2 4.7E-05 37.1 3.2 37 1-37 685-722 (1139)
167 COG0610 Type I site-specific r 76.3 7.5 0.00016 33.4 5.6 64 4-68 582-651 (962)
168 KOG0298|consensus 74.8 2.7 5.8E-05 37.0 2.6 55 4-60 1259-1314(1394)
169 PF10657 RC-P840_PscD: Photosy 73.4 6.9 0.00015 25.5 3.7 37 3-39 64-106 (144)
170 KOG0921|consensus 73.0 1.6 3.5E-05 37.3 0.9 58 3-60 690-765 (1282)
171 PRK10917 ATP-dependent DNA hel 70.5 4.3 9.4E-05 33.3 2.8 36 2-37 353-389 (681)
172 KOG0701|consensus 69.7 1.3 2.8E-05 39.7 -0.3 54 3-56 711-764 (1606)
173 COG3587 Restriction endonuclea 68.4 24 0.00051 30.3 6.5 45 12-56 482-526 (985)
174 PF11576 DUF3236: Protein of u 68.0 4.6 0.0001 27.0 2.0 50 4-66 53-114 (154)
175 COG1200 RecG RecG-like helicas 68.0 6.6 0.00014 32.4 3.3 37 1-37 353-390 (677)
176 COG1110 Reverse gyrase [DNA re 66.9 4.6 0.0001 35.0 2.3 20 2-21 170-189 (1187)
177 COG4019 Uncharacterized protei 64.5 9.8 0.00021 25.1 3.0 29 25-66 87-115 (156)
178 TIGR00580 mfd transcription-re 63.9 6 0.00013 33.8 2.4 36 2-37 543-579 (926)
179 PRK10689 transcription-repair 62.4 6.4 0.00014 34.5 2.4 36 2-37 692-728 (1147)
180 PRK15483 type III restriction- 61.1 10 0.00022 32.7 3.3 44 13-56 501-544 (986)
181 KOG1133|consensus 60.3 51 0.0011 27.8 6.9 66 4-69 674-779 (821)
182 TIGR00643 recG ATP-dependent D 59.6 9 0.0002 31.1 2.7 36 2-37 327-363 (630)
183 COG1182 AcpD Acyl carrier prot 57.5 17 0.00038 25.6 3.5 39 4-56 80-118 (202)
184 PHA03371 circ protein; Provisi 56.0 8.4 0.00018 27.7 1.7 78 22-99 29-125 (240)
185 PF14824 Sirohm_synth_M: Siroh 55.2 8.6 0.00019 18.7 1.2 13 10-22 1-13 (30)
186 TIGR01054 rgy reverse gyrase. 50.5 9.4 0.0002 33.5 1.5 31 42-72 515-549 (1171)
187 PRK09401 reverse gyrase; Revie 48.2 10 0.00022 33.3 1.4 31 42-72 517-551 (1176)
188 KOG1001|consensus 45.0 2.2 4.8E-05 35.2 -2.9 62 2-63 578-641 (674)
189 KOG0327|consensus 44.8 99 0.0021 24.1 6.0 91 10-103 119-209 (397)
190 KOG1131|consensus 43.9 1.2E+02 0.0027 25.0 6.6 33 11-43 588-624 (755)
191 cd01294 DHOase Dihydroorotase 42.0 23 0.00051 26.1 2.3 25 1-25 222-246 (335)
192 PRK05580 primosome assembly pr 40.9 43 0.00092 27.7 3.8 37 2-39 230-266 (679)
193 KOG2340|consensus 38.8 1.1E+02 0.0023 25.3 5.5 52 5-56 594-647 (698)
194 PF07013 DUF1314: Protein of u 36.8 38 0.00082 23.3 2.5 78 22-99 8-102 (177)
195 COG1212 KdsB CMP-2-keto-3-deox 36.6 37 0.00081 24.6 2.5 30 1-30 199-232 (247)
196 TIGR00595 priA primosomal prot 35.0 46 0.001 26.5 3.1 37 2-39 65-101 (505)
197 PF10141 ssDNA-exonuc_C: Singl 33.6 1.6E+02 0.0034 20.2 7.1 28 24-51 44-71 (195)
198 PRK12902 secA preprotein trans 32.8 26 0.00056 30.2 1.4 20 11-30 486-506 (939)
199 cd06404 PB1_aPKC PB1 domain is 30.3 1.3E+02 0.0027 18.2 3.8 33 34-66 12-44 (83)
200 TIGR03590 PseG pseudaminic aci 30.1 1.5E+02 0.0033 21.3 4.9 39 6-47 96-134 (279)
201 PRK05583 ribosomal protein L7A 29.6 60 0.0013 20.1 2.4 25 3-27 23-48 (104)
202 PF07313 DUF1460: Protein of u 29.4 27 0.00058 24.8 0.9 32 5-39 150-181 (216)
203 PRK05451 dihydroorotase; Provi 27.3 56 0.0012 24.4 2.3 25 1-25 228-252 (345)
204 PRK13601 putative L7Ae-like ri 26.3 91 0.002 18.6 2.7 23 3-25 14-37 (82)
205 cd03770 SR_TndX_transposase Se 25.1 88 0.0019 20.1 2.7 20 3-22 58-77 (140)
206 TIGR00856 pyrC_dimer dihydroor 25.0 67 0.0015 24.1 2.4 27 1-27 225-251 (341)
207 PRK06683 hypothetical protein; 24.1 1.1E+02 0.0023 18.2 2.7 23 3-25 17-40 (82)
208 PRK07283 hypothetical protein; 23.2 91 0.002 19.0 2.4 25 3-27 24-49 (98)
209 PRK07714 hypothetical protein; 23.2 90 0.0019 19.0 2.3 25 3-27 24-49 (100)
210 PHA02783 uncharacterized prote 23.1 56 0.0012 21.4 1.4 48 13-60 57-107 (181)
211 PF12761 End3: Actin cytoskele 22.9 65 0.0014 22.6 1.8 14 44-57 67-80 (195)
212 PRK14873 primosome assembly pr 22.8 1.4E+02 0.003 24.9 3.9 38 1-39 228-265 (665)
213 PF02142 MGS: MGS-like domain 22.1 93 0.002 18.5 2.2 19 4-22 51-69 (95)
214 PF12614 RRF_GI: Ribosome recy 22.0 54 0.0012 21.5 1.2 14 42-55 7-20 (128)
215 PF14091 DUF4269: Domain of un 21.9 1.9E+02 0.0042 19.4 3.8 43 4-49 8-52 (152)
216 smart00851 MGS MGS-like domain 21.9 1.1E+02 0.0023 18.0 2.4 18 4-21 46-63 (90)
217 PTZ00106 60S ribosomal protein 21.3 1.1E+02 0.0024 19.2 2.5 23 3-25 31-54 (108)
218 PRK13602 putative ribosomal pr 20.8 1.4E+02 0.0029 17.6 2.7 23 3-25 17-40 (82)
219 PF04312 DUF460: Protein of un 20.0 1.3E+02 0.0028 20.0 2.6 22 2-23 65-86 (138)
No 1
>KOG0331|consensus
Probab=99.91 E-value=1.8e-24 Score=166.44 Aligned_cols=88 Identities=25% Similarity=0.386 Sum_probs=74.7
Q ss_pred ChHHHHHHHhcCCccEEEEcCccccccccCCCCEEEEeCCCCCHHHHHHHHhhcccCCCceEEEEeccCchHHHhhcchH
Q psy16582 1 MDVQTMLSFNRGITNILVATDVLEEGIDIQSCNLVIKFDPPQHTRSYVQSKAFTVVRHKAEQILSQYPKSERYLQYNSPK 80 (109)
Q Consensus 1 er~~~~~~F~~g~~~iLV~T~~~~~Gldi~~v~~Vi~~d~p~~~~~y~qr~GR~gR~g~~~~~~~~~~~~~~~~~~~~~~ 80 (109)
||+.+|+.|++|++.||||||+++||||+|+|++|||||+|.++++|+||+||+||+|++|..+.|+...+.. .
T Consensus 379 eR~~~L~~FreG~~~vLVATdVAaRGLDi~dV~lVInydfP~~vEdYVHRiGRTGRa~~~G~A~tfft~~~~~------~ 452 (519)
T KOG0331|consen 379 ERDWVLKGFREGKSPVLVATDVAARGLDVPDVDLVINYDFPNNVEDYVHRIGRTGRAGKKGTAITFFTSDNAK------L 452 (519)
T ss_pred HHHHHHHhcccCCcceEEEcccccccCCCccccEEEeCCCCCCHHHHHhhcCccccCCCCceEEEEEeHHHHH------H
Confidence 5889999999999999999999999999999999999999999999999999999999988888875544333 3
Q ss_pred HHHHHHHHhhcCcc
Q psy16582 81 INRLLQLLRRYNPD 94 (109)
Q Consensus 81 ~~~~~~~~~~~~~~ 94 (109)
...+.+.+++.++.
T Consensus 453 a~~l~~~l~e~~q~ 466 (519)
T KOG0331|consen 453 ARELIKVLREAGQT 466 (519)
T ss_pred HHHHHHHHHHccCC
Confidence 44555566555543
No 2
>KOG0330|consensus
Probab=99.89 E-value=1.2e-23 Score=156.47 Aligned_cols=68 Identities=25% Similarity=0.511 Sum_probs=64.2
Q ss_pred hHHHHHHHhcCCccEEEEcCccccccccCCCCEEEEeCCCCCHHHHHHHHhhcccCCCceEEEEeccC
Q psy16582 2 DVQTMLSFNRGITNILVATDVLEEGIDIQSCNLVIKFDPPQHTRSYVQSKAFTVVRHKAEQILSQYPK 69 (109)
Q Consensus 2 r~~~~~~F~~g~~~iLV~T~~~~~Gldi~~v~~Vi~~d~p~~~~~y~qr~GR~gR~g~~~~~~~~~~~ 69 (109)
|..++++|++|..+||||||+++||+|+|+|++|||||+|.+..+|+||+||++|.|.+|.++.+...
T Consensus 339 Rlg~l~~Fk~~~r~iLv~TDVaSRGLDip~Vd~VVNyDiP~~skDYIHRvGRtaRaGrsG~~ItlVtq 406 (476)
T KOG0330|consen 339 RLGALNKFKAGARSILVCTDVASRGLDIPHVDVVVNYDIPTHSKDYIHRVGRTARAGRSGKAITLVTQ 406 (476)
T ss_pred HHHHHHHHhccCCcEEEecchhcccCCCCCceEEEecCCCCcHHHHHHHcccccccCCCcceEEEEeh
Confidence 67789999999999999999999999999999999999999999999999999999999988887543
No 3
>KOG0335|consensus
Probab=99.88 E-value=6.6e-23 Score=156.18 Aligned_cols=95 Identities=24% Similarity=0.310 Sum_probs=84.1
Q ss_pred ChHHHHHHHhcCCccEEEEcCccccccccCCCCEEEEeCCCCCHHHHHHHHhhcccCCCceEEEEeccCchHHHhhcchH
Q psy16582 1 MDVQTMLSFNRGITNILVATDVLEEGIDIQSCNLVIKFDPPQHTRSYVQSKAFTVVRHKAEQILSQYPKSERYLQYNSPK 80 (109)
Q Consensus 1 er~~~~~~F~~g~~~iLV~T~~~~~Gldi~~v~~Vi~~d~p~~~~~y~qr~GR~gR~g~~~~~~~~~~~~~~~~~~~~~~ 80 (109)
||.++++.|++|++.+||||++++||+|+|+|++|||||+|.+..+|+||+||+||.|..|.++.|+.. ....-
T Consensus 375 er~~al~~Fr~g~~pvlVaT~VaaRGlDi~~V~hVInyDmP~d~d~YvHRIGRTGR~Gn~G~atsf~n~------~~~~i 448 (482)
T KOG0335|consen 375 EREQALNDFRNGKAPVLVATNVAARGLDIPNVKHVINYDMPADIDDYVHRIGRTGRVGNGGRATSFFNE------KNQNI 448 (482)
T ss_pred HHHHHHHHhhcCCcceEEEehhhhcCCCCCCCceeEEeecCcchhhHHHhccccccCCCCceeEEEecc------ccchh
Confidence 588999999999999999999999999999999999999999999999999999999999999998762 22233
Q ss_pred HHHHHHHHhhcCcccHHHHhh
Q psy16582 81 INRLLQLLRRYNPDQRTIIFC 101 (109)
Q Consensus 81 ~~~~~~~~~~~~~~~r~~~~~ 101 (109)
...+.+.+.+..+....+|..
T Consensus 449 ~~~L~~~l~ea~q~vP~wl~~ 469 (482)
T KOG0335|consen 449 AKALVEILTEANQEVPQWLSE 469 (482)
T ss_pred HHHHHHHHHHhcccCcHHHHh
Confidence 566788888888888888865
No 4
>KOG0333|consensus
Probab=99.88 E-value=6e-23 Score=157.27 Aligned_cols=73 Identities=29% Similarity=0.391 Sum_probs=68.4
Q ss_pred ChHHHHHHHhcCCccEEEEcCccccccccCCCCEEEEeCCCCCHHHHHHHHhhcccCCCceEEEEeccCchHH
Q psy16582 1 MDVQTMLSFNRGITNILVATDVLEEGIDIQSCNLVIKFDPPQHTRSYVQSKAFTVVRHKAEQILSQYPKSERY 73 (109)
Q Consensus 1 er~~~~~~F~~g~~~iLV~T~~~~~Gldi~~v~~Vi~~d~p~~~~~y~qr~GR~gR~g~~~~~~~~~~~~~~~ 73 (109)
+|+.++.+|++|..+||||||+++||||+|+|.+|||||++.+..+|.||+||+||+|+.|.++.|+...+.-
T Consensus 555 QRe~aL~~fr~~t~dIlVaTDvAgRGIDIpnVSlVinydmaksieDYtHRIGRTgRAGk~GtaiSflt~~dt~ 627 (673)
T KOG0333|consen 555 QRENALADFREGTGDILVATDVAGRGIDIPNVSLVINYDMAKSIEDYTHRIGRTGRAGKSGTAISFLTPADTA 627 (673)
T ss_pred HHHHHHHHHHhcCCCEEEEecccccCCCCCccceeeecchhhhHHHHHHHhccccccccCceeEEEeccchhH
Confidence 4788999999999999999999999999999999999999999999999999999999999999997665543
No 5
>KOG0336|consensus
Probab=99.88 E-value=1.2e-22 Score=152.66 Aligned_cols=89 Identities=24% Similarity=0.349 Sum_probs=74.4
Q ss_pred ChHHHHHHHhcCCccEEEEcCccccccccCCCCEEEEeCCCCCHHHHHHHHhhcccCCCceEEEEeccCchHHHhhcchH
Q psy16582 1 MDVQTMLSFNRGITNILVATDVLEEGIDIQSCNLVIKFDPPQHTRSYVQSKAFTVVRHKAEQILSQYPKSERYLQYNSPK 80 (109)
Q Consensus 1 er~~~~~~F~~g~~~iLV~T~~~~~Gldi~~v~~Vi~~d~p~~~~~y~qr~GR~gR~g~~~~~~~~~~~~~~~~~~~~~~ 80 (109)
+|+.+++.|++|+++||||||+++||+|+|++.||+|||+|.+.+.|+||+||+||.|+.|..+.+...++.. .
T Consensus 503 DrE~al~~~ksG~vrILvaTDlaSRGlDv~DiTHV~NyDFP~nIeeYVHRvGrtGRaGr~G~sis~lt~~D~~------~ 576 (629)
T KOG0336|consen 503 DREMALEDFKSGEVRILVATDLASRGLDVPDITHVYNYDFPRNIEEYVHRVGRTGRAGRTGTSISFLTRNDWS------M 576 (629)
T ss_pred hHHHHHHhhhcCceEEEEEechhhcCCCchhcceeeccCCCccHHHHHHHhcccccCCCCcceEEEEehhhHH------H
Confidence 4789999999999999999999999999999999999999999999999999999999998888876544332 2
Q ss_pred HHHHHHHHhhcCccc
Q psy16582 81 INRLLQLLRRYNPDQ 95 (109)
Q Consensus 81 ~~~~~~~~~~~~~~~ 95 (109)
+..+++.|++.+++.
T Consensus 577 a~eLI~ILe~aeQev 591 (629)
T KOG0336|consen 577 AEELIQILERAEQEV 591 (629)
T ss_pred HHHHHHHHHHhhhhC
Confidence 344555555555443
No 6
>KOG0328|consensus
Probab=99.88 E-value=9.9e-23 Score=147.19 Aligned_cols=72 Identities=24% Similarity=0.371 Sum_probs=68.5
Q ss_pred ChHHHHHHHhcCCccEEEEcCccccccccCCCCEEEEeCCCCCHHHHHHHHhhcccCCCceEEEEeccCchH
Q psy16582 1 MDVQTMLSFNRGITNILVATDVLEEGIDIQSCNLVIKFDPPQHTRSYVQSKAFTVVRHKAEQILSQYPKSER 72 (109)
Q Consensus 1 er~~~~~~F~~g~~~iLV~T~~~~~Gldi~~v~~Vi~~d~p~~~~~y~qr~GR~gR~g~~~~~~~~~~~~~~ 72 (109)
||++++++||+|+.+|||+||+.+||+|+|.|++|||||+|.+.+.|+||+||+||.|++|.++.|...++.
T Consensus 304 ERd~im~dFRsg~SrvLitTDVwaRGiDv~qVslviNYDLP~nre~YIHRIGRSGRFGRkGvainFVk~~d~ 375 (400)
T KOG0328|consen 304 ERDKIMNDFRSGKSRVLITTDVWARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDL 375 (400)
T ss_pred HHHHHHHHhhcCCceEEEEechhhccCCcceeEEEEecCCCccHHHHhhhhccccccCCcceEEEEecHHHH
Confidence 689999999999999999999999999999999999999999999999999999999999999999766544
No 7
>KOG0345|consensus
Probab=99.87 E-value=1.2e-22 Score=153.90 Aligned_cols=107 Identities=23% Similarity=0.395 Sum_probs=91.2
Q ss_pred ChHHHHHHHhcCCccEEEEcCccccccccCCCCEEEEeCCCCCHHHHHHHHhhcccCCCceEEEEe-ccCchHHHhhcch
Q psy16582 1 MDVQTMLSFNRGITNILVATDVLEEGIDIQSCNLVIKFDPPQHTRSYVQSKAFTVVRHKAEQILSQ-YPKSERYLQYNSP 79 (109)
Q Consensus 1 er~~~~~~F~~g~~~iLV~T~~~~~Gldi~~v~~Vi~~d~p~~~~~y~qr~GR~gR~g~~~~~~~~-~~~~~~~~~~~~~ 79 (109)
.|..++++|+.-.-.+|+|||+++||||+|+|++||+||+|.++++|+||+||++|.|+.|.+++| .+.++.|+++..-
T Consensus 295 ~R~k~~~~F~~~~~~vl~~TDVaARGlDip~iD~VvQ~DpP~~~~~FvHR~GRTaR~gr~G~Aivfl~p~E~aYveFl~i 374 (567)
T KOG0345|consen 295 ARAKVLEAFRKLSNGVLFCTDVAARGLDIPGIDLVVQFDPPKDPSSFVHRCGRTARAGREGNAIVFLNPREEAYVEFLRI 374 (567)
T ss_pred hHHHHHHHHHhccCceEEeehhhhccCCCCCceEEEecCCCCChhHHHhhcchhhhccCccceEEEecccHHHHHHHHHh
Confidence 378899999998888999999999999999999999999999999999999999999987776655 6778888765321
Q ss_pred H------------HHH-HHHHHhhcCcccHHHHhhcccccc
Q psy16582 80 K------------INR-LLQLLRRYNPDQRTIIFCQRRATI 107 (109)
Q Consensus 80 ~------------~~~-~~~~~~~~~~~~r~~~~~~~~~~~ 107 (109)
. .+. +.+.+..+-...|.+++.+.+||+
T Consensus 375 ~~~v~le~~~~e~~~~~~~~~ir~~~~~DR~~~dkG~kAFV 415 (567)
T KOG0345|consen 375 KGKVELERIDTEKASLSVYQDIRSIISKDRAVLDKGLKAFV 415 (567)
T ss_pred cCccchhhhcccccchhHHHHHHHHhcccHHHHhhhHHHHH
Confidence 1 112 577888888899999999999975
No 8
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=99.87 E-value=3.9e-22 Score=154.91 Aligned_cols=71 Identities=24% Similarity=0.328 Sum_probs=66.6
Q ss_pred ChHHHHHHHhcCCccEEEEcCccccccccCCCCEEEEeCCCCCHHHHHHHHhhcccCCCceEEEEeccCch
Q psy16582 1 MDVQTMLSFNRGITNILVATDVLEEGIDIQSCNLVIKFDPPQHTRSYVQSKAFTVVRHKAEQILSQYPKSE 71 (109)
Q Consensus 1 er~~~~~~F~~g~~~iLV~T~~~~~Gldi~~v~~Vi~~d~p~~~~~y~qr~GR~gR~g~~~~~~~~~~~~~ 71 (109)
+|.+++++|++|+++|||||+++++|+|+|+|++|||||+|.+..+|+||+||+||.|..|.++.++..++
T Consensus 406 eR~~il~~Fr~G~~~ILVaTdvl~rGiDip~v~~VI~~d~P~s~~~yihRiGRaGR~g~~G~ai~f~~~~~ 476 (518)
T PLN00206 406 ERREVMKSFLVGEVPVIVATGVLGRGVDLLRVRQVIIFDMPNTIKEYIHQIGRASRMGEKGTAIVFVNEED 476 (518)
T ss_pred HHHHHHHHHHCCCCCEEEEecHhhccCCcccCCEEEEeCCCCCHHHHHHhccccccCCCCeEEEEEEchhH
Confidence 58899999999999999999999999999999999999999999999999999999999888888866544
No 9
>PTZ00110 helicase; Provisional
Probab=99.87 E-value=5.3e-22 Score=155.03 Aligned_cols=71 Identities=24% Similarity=0.353 Sum_probs=66.4
Q ss_pred ChHHHHHHHhcCCccEEEEcCccccccccCCCCEEEEeCCCCCHHHHHHHHhhcccCCCceEEEEeccCch
Q psy16582 1 MDVQTMLSFNRGITNILVATDVLEEGIDIQSCNLVIKFDPPQHTRSYVQSKAFTVVRHKAEQILSQYPKSE 71 (109)
Q Consensus 1 er~~~~~~F~~g~~~iLV~T~~~~~Gldi~~v~~Vi~~d~p~~~~~y~qr~GR~gR~g~~~~~~~~~~~~~ 71 (109)
||++++++|++|+++|||||+++++|+|+|+|++|||||+|.+..+|+||+||+||.|..+.++.++..++
T Consensus 415 eR~~il~~F~~G~~~ILVaTdv~~rGIDi~~v~~VI~~d~P~s~~~yvqRiGRtGR~G~~G~ai~~~~~~~ 485 (545)
T PTZ00110 415 ERTWVLNEFKTGKSPIMIATDVASRGLDVKDVKYVINFDFPNQIEDYVHRIGRTGRAGAKGASYTFLTPDK 485 (545)
T ss_pred HHHHHHHHHhcCCCcEEEEcchhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccccCCCCceEEEEECcch
Confidence 57889999999999999999999999999999999999999999999999999999999888888865543
No 10
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=99.87 E-value=1.6e-22 Score=156.97 Aligned_cols=69 Identities=28% Similarity=0.364 Sum_probs=66.2
Q ss_pred ChHHHHHHHhcCCccEEEEcCccccccccCCCCEEEEeCCCCCHHHHHHHHhhcccCCCceEEEEeccC
Q psy16582 1 MDVQTMLSFNRGITNILVATDVLEEGIDIQSCNLVIKFDPPQHTRSYVQSKAFTVVRHKAEQILSQYPK 69 (109)
Q Consensus 1 er~~~~~~F~~g~~~iLV~T~~~~~Gldi~~v~~Vi~~d~p~~~~~y~qr~GR~gR~g~~~~~~~~~~~ 69 (109)
+|++++++|++|+++||||||+++||||+|+|++|||||+|.+.+.|+||+||+||.|.+|..+.|+.+
T Consensus 311 ~R~~~l~~F~~g~~~vLVaTDvaaRGiDi~~v~~VinyD~p~~~e~yvHRiGRTgRaG~~G~ai~fv~~ 379 (513)
T COG0513 311 ERDRALEKFKDGELRVLVATDVAARGLDIPDVSHVINYDLPLDPEDYVHRIGRTGRAGRKGVAISFVTE 379 (513)
T ss_pred HHHHHHHHHHcCCCCEEEEechhhccCCccccceeEEccCCCCHHHheeccCccccCCCCCeEEEEeCc
Confidence 588999999999999999999999999999999999999999999999999999999999999998765
No 11
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.87 E-value=1.7e-22 Score=153.19 Aligned_cols=72 Identities=26% Similarity=0.344 Sum_probs=67.6
Q ss_pred ChHHHHHHHhcCCccEEEEcCccccccccCCCCEEEEeCCCCCHHHHHHHHhhcccCCCceEEEEeccCchH
Q psy16582 1 MDVQTMLSFNRGITNILVATDVLEEGIDIQSCNLVIKFDPPQHTRSYVQSKAFTVVRHKAEQILSQYPKSER 72 (109)
Q Consensus 1 er~~~~~~F~~g~~~iLV~T~~~~~Gldi~~v~~Vi~~d~p~~~~~y~qr~GR~gR~g~~~~~~~~~~~~~~ 72 (109)
+|.+++++|++|+++||||||++++|+|+|+|++|||||+|.+..+|+||+||+||.|+.|.++.+..+++.
T Consensus 293 ~R~~~l~~F~~g~~~vLVaTdv~~rGiDip~v~~VI~~d~P~s~~~yiqR~GR~gR~G~~G~ai~~~~~~~~ 364 (423)
T PRK04837 293 KRLRILEEFTRGDLDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYA 364 (423)
T ss_pred HHHHHHHHHHcCCCcEEEEechhhcCCCccccCEEEEeCCCCchhheEeccccccCCCCCeeEEEEeCHHHH
Confidence 578999999999999999999999999999999999999999999999999999999999999988766543
No 12
>KOG0340|consensus
Probab=99.86 E-value=3.2e-22 Score=147.69 Aligned_cols=69 Identities=25% Similarity=0.423 Sum_probs=64.9
Q ss_pred ChHHHHHHHhcCCccEEEEcCccccccccCCCCEEEEeCCCCCHHHHHHHHhhcccCCCceEEEEeccC
Q psy16582 1 MDVQTMLSFNRGITNILVATDVLEEGIDIQSCNLVIKFDPPQHTRSYVQSKAFTVVRHKAEQILSQYPK 69 (109)
Q Consensus 1 er~~~~~~F~~g~~~iLV~T~~~~~Gldi~~v~~Vi~~d~p~~~~~y~qr~GR~gR~g~~~~~~~~~~~ 69 (109)
||-.++.+||++..+||||||+++||+|+|+|++|||||+|.++..|+||+||+.|.|+.|..+.++..
T Consensus 292 eR~~aLsrFrs~~~~iliaTDVAsRGLDIP~V~LVvN~diPr~P~~yiHRvGRtARAGR~G~aiSivt~ 360 (442)
T KOG0340|consen 292 ERLAALSRFRSNAARILIATDVASRGLDIPTVELVVNHDIPRDPKDYIHRVGRTARAGRKGMAISIVTQ 360 (442)
T ss_pred HHHHHHHHHhhcCccEEEEechhhcCCCCCceeEEEecCCCCCHHHHHHhhcchhcccCCcceEEEech
Confidence 577889999999999999999999999999999999999999999999999999999999988887653
No 13
>KOG0341|consensus
Probab=99.85 E-value=9.1e-22 Score=147.23 Aligned_cols=93 Identities=24% Similarity=0.312 Sum_probs=75.1
Q ss_pred ChHHHHHHHhcCCccEEEEcCccccccccCCCCEEEEeCCCCCHHHHHHHHhhcccCCCceEEEEeccCchHHHhhcchH
Q psy16582 1 MDVQTMLSFNRGITNILVATDVLEEGIDIQSCNLVIKFDPPQHTRSYVQSKAFTVVRHKAEQILSQYPKSERYLQYNSPK 80 (109)
Q Consensus 1 er~~~~~~F~~g~~~iLV~T~~~~~Gldi~~v~~Vi~~d~p~~~~~y~qr~GR~gR~g~~~~~~~~~~~~~~~~~~~~~~ 80 (109)
+|..+++.||.|+.+||||||+++.|+|+|++++|||||+|...++|+||+||+||.|+.|....|..+.... ..
T Consensus 459 dR~~ai~afr~gkKDVLVATDVASKGLDFp~iqHVINyDMP~eIENYVHRIGRTGRsg~~GiATTfINK~~~e-----sv 533 (610)
T KOG0341|consen 459 DRHYAIEAFRAGKKDVLVATDVASKGLDFPDIQHVINYDMPEEIENYVHRIGRTGRSGKTGIATTFINKNQEE-----SV 533 (610)
T ss_pred HHHHHHHHHhcCCCceEEEecchhccCCCccchhhccCCChHHHHHHHHHhcccCCCCCcceeeeeecccchH-----HH
Confidence 4778999999999999999999999999999999999999999999999999999999999999886553322 12
Q ss_pred HHHHHHHHhhcCcccHHH
Q psy16582 81 INRLLQLLRRYNPDQRTI 98 (109)
Q Consensus 81 ~~~~~~~~~~~~~~~r~~ 98 (109)
...+..++.+..+.....
T Consensus 534 LlDLK~LL~EakQ~vP~~ 551 (610)
T KOG0341|consen 534 LLDLKHLLQEAKQEVPPV 551 (610)
T ss_pred HHHHHHHHHHhhccCCHH
Confidence 233444455544444333
No 14
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.84 E-value=4.2e-21 Score=147.53 Aligned_cols=73 Identities=27% Similarity=0.382 Sum_probs=67.9
Q ss_pred ChHHHHHHHhcCCccEEEEcCccccccccCCCCEEEEeCCCCCHHHHHHHHhhcccCCCceEEEEeccCchHH
Q psy16582 1 MDVQTMLSFNRGITNILVATDVLEEGIDIQSCNLVIKFDPPQHTRSYVQSKAFTVVRHKAEQILSQYPKSERY 73 (109)
Q Consensus 1 er~~~~~~F~~g~~~iLV~T~~~~~Gldi~~v~~Vi~~d~p~~~~~y~qr~GR~gR~g~~~~~~~~~~~~~~~ 73 (109)
+|.+++++|++|++++||||+++++|+|+|+|++||+||+|.+..+|+||+||+||.|..|.++++..+++.+
T Consensus 373 ~R~~~~~~Fr~G~~~vLvaT~~l~~GIDi~~v~~VI~~~~P~s~~~y~Qr~GRaGR~g~~g~~i~~~~~~d~~ 445 (475)
T PRK01297 373 KRIKTLEGFREGKIRVLVATDVAGRGIHIDGISHVINFTLPEDPDDYVHRIGRTGRAGASGVSISFAGEDDAF 445 (475)
T ss_pred HHHHHHHHHhCCCCcEEEEccccccCCcccCCCEEEEeCCCCCHHHHHHhhCccCCCCCCceEEEEecHHHHH
Confidence 4789999999999999999999999999999999999999999999999999999999999888887665544
No 15
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=99.84 E-value=3.3e-21 Score=147.50 Aligned_cols=72 Identities=25% Similarity=0.265 Sum_probs=67.3
Q ss_pred ChHHHHHHHhcCCccEEEEcCccccccccCCCCEEEEeCCCCCHHHHHHHHhhcccCCCceEEEEeccCchH
Q psy16582 1 MDVQTMLSFNRGITNILVATDVLEEGIDIQSCNLVIKFDPPQHTRSYVQSKAFTVVRHKAEQILSQYPKSER 72 (109)
Q Consensus 1 er~~~~~~F~~g~~~iLV~T~~~~~Gldi~~v~~Vi~~d~p~~~~~y~qr~GR~gR~g~~~~~~~~~~~~~~ 72 (109)
+|++++++|++|+++|||||+++++|+|+|++++|||||+|.+..+|+||+||+||.|..|.++.++.+++.
T Consensus 280 eR~~~l~~F~~g~~~vLVaTdv~~rGiDi~~v~~VI~~d~p~~~~~yiqR~GRtGR~g~~G~ai~l~~~~e~ 351 (460)
T PRK11776 280 DRDQVLVRFANRSCSVLVATDVAARGLDIKALEAVINYELARDPEVHVHRIGRTGRAGSKGLALSLVAPEEM 351 (460)
T ss_pred HHHHHHHHHHcCCCcEEEEecccccccchhcCCeEEEecCCCCHhHhhhhcccccCCCCcceEEEEEchhHH
Confidence 588999999999999999999999999999999999999999999999999999999999998888765544
No 16
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=99.84 E-value=4.2e-21 Score=147.03 Aligned_cols=71 Identities=25% Similarity=0.367 Sum_probs=65.7
Q ss_pred ChHHHHHHHhcCCccEEEEcCccccccccCCCCEEEEeCCCCCHHHHHHHHhhcccCCCceEEEEeccCch
Q psy16582 1 MDVQTMLSFNRGITNILVATDVLEEGIDIQSCNLVIKFDPPQHTRSYVQSKAFTVVRHKAEQILSQYPKSE 71 (109)
Q Consensus 1 er~~~~~~F~~g~~~iLV~T~~~~~Gldi~~v~~Vi~~d~p~~~~~y~qr~GR~gR~g~~~~~~~~~~~~~ 71 (109)
+|.+++++|++|+++|||||+++++|+|+|+|++|||||+|.+..+|+||+||+||.|..+.++.++..++
T Consensus 283 ~R~~~l~~F~~g~~~iLVaTdv~~rGiDip~v~~VI~~~~P~~~~~yvqR~GRaGR~g~~G~ai~l~~~~d 353 (456)
T PRK10590 283 ARTRALADFKSGDIRVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDE 353 (456)
T ss_pred HHHHHHHHHHcCCCcEEEEccHHhcCCCcccCCEEEEeCCCCCHHHhhhhccccccCCCCeeEEEEecHHH
Confidence 47899999999999999999999999999999999999999999999999999999998888887755443
No 17
>KOG0342|consensus
Probab=99.84 E-value=4.6e-21 Score=145.74 Aligned_cols=74 Identities=27% Similarity=0.427 Sum_probs=66.3
Q ss_pred ChHHHHHHHhcCCccEEEEcCccccccccCCCCEEEEeCCCCCHHHHHHHHhhcccCCCceEEEEeccCchHHH
Q psy16582 1 MDVQTMLSFNRGITNILVATDVLEEGIDIQSCNLVIKFDPPQHTRSYVQSKAFTVVRHKAEQILSQYPKSERYL 74 (109)
Q Consensus 1 er~~~~~~F~~g~~~iLV~T~~~~~Gldi~~v~~Vi~~d~p~~~~~y~qr~GR~gR~g~~~~~~~~~~~~~~~~ 74 (109)
.|..+..+|++.+.-|||||||++||+|+|+|++||+||+|.++.+|+||+||+||.|+.|..+.+..+.+.++
T Consensus 368 kRT~~~~~F~kaesgIL~cTDVaARGlD~P~V~~VvQ~~~P~d~~~YIHRvGRTaR~gk~G~alL~l~p~El~F 441 (543)
T KOG0342|consen 368 KRTSTFFEFCKAESGILVCTDVAARGLDIPDVDWVVQYDPPSDPEQYIHRVGRTAREGKEGKALLLLAPWELGF 441 (543)
T ss_pred ccchHHHHHhhcccceEEecchhhccCCCCCceEEEEeCCCCCHHHHHHHhccccccCCCceEEEEeChhHHHH
Confidence 47789999999999999999999999999999999999999999999999999999998888777655555443
No 18
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=99.83 E-value=9.3e-21 Score=143.93 Aligned_cols=72 Identities=28% Similarity=0.397 Sum_probs=66.3
Q ss_pred ChHHHHHHHhcCCccEEEEcCccccccccCCCCEEEEeCCCCCHHHHHHHHhhcccCCCceEEEEeccCchH
Q psy16582 1 MDVQTMLSFNRGITNILVATDVLEEGIDIQSCNLVIKFDPPQHTRSYVQSKAFTVVRHKAEQILSQYPKSER 72 (109)
Q Consensus 1 er~~~~~~F~~g~~~iLV~T~~~~~Gldi~~v~~Vi~~d~p~~~~~y~qr~GR~gR~g~~~~~~~~~~~~~~ 72 (109)
+|.+++++|++|+++|||||+++++|+|+|+|++|||||+|.+...|+||+||+||.|..+.++++....+.
T Consensus 283 ~R~~~l~~f~~G~~~vLVaTd~~~~GiDip~v~~VI~~d~p~s~~~yiqr~GR~gR~g~~g~ai~l~~~~d~ 354 (434)
T PRK11192 283 KRNEAIKRLTDGRVNVLVATDVAARGIDIDDVSHVINFDMPRSADTYLHRIGRTGRAGRKGTAISLVEAHDH 354 (434)
T ss_pred HHHHHHHHHhCCCCcEEEEccccccCccCCCCCEEEEECCCCCHHHHhhcccccccCCCCceEEEEecHHHH
Confidence 478999999999999999999999999999999999999999999999999999999998888887654433
No 19
>KOG0338|consensus
Probab=99.83 E-value=1.7e-20 Score=143.77 Aligned_cols=72 Identities=24% Similarity=0.423 Sum_probs=67.1
Q ss_pred hHHHHHHHhcCCccEEEEcCccccccccCCCCEEEEeCCCCCHHHHHHHHhhcccCCCceEEEEeccCchHH
Q psy16582 2 DVQTMLSFNRGITNILVATDVLEEGIDIQSCNLVIKFDPPQHTRSYVQSKAFTVVRHKAEQILSQYPKSERY 73 (109)
Q Consensus 2 r~~~~~~F~~g~~~iLV~T~~~~~Gldi~~v~~Vi~~d~p~~~~~y~qr~GR~gR~g~~~~~~~~~~~~~~~ 73 (109)
|-+++++|+.+++++|||||+++||+||+.|..||||++|.+...|+||+||+.|.|+.|..+.+..+.+.-
T Consensus 465 RlesL~kFk~~eidvLiaTDvAsRGLDI~gV~tVINy~mP~t~e~Y~HRVGRTARAGRaGrsVtlvgE~dRk 536 (691)
T KOG0338|consen 465 RLESLEKFKKEEIDVLIATDVASRGLDIEGVQTVINYAMPKTIEHYLHRVGRTARAGRAGRSVTLVGESDRK 536 (691)
T ss_pred HHHHHHHHHhccCCEEEEechhhccCCccceeEEEeccCchhHHHHHHHhhhhhhcccCcceEEEeccccHH
Confidence 668899999999999999999999999999999999999999999999999999999999999987665443
No 20
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.83 E-value=1.2e-20 Score=148.12 Aligned_cols=72 Identities=25% Similarity=0.310 Sum_probs=67.1
Q ss_pred ChHHHHHHHhcCCccEEEEcCccccccccCCCCEEEEeCCCCCHHHHHHHHhhcccCCCceEEEEeccCchH
Q psy16582 1 MDVQTMLSFNRGITNILVATDVLEEGIDIQSCNLVIKFDPPQHTRSYVQSKAFTVVRHKAEQILSQYPKSER 72 (109)
Q Consensus 1 er~~~~~~F~~g~~~iLV~T~~~~~Gldi~~v~~Vi~~d~p~~~~~y~qr~GR~gR~g~~~~~~~~~~~~~~ 72 (109)
+|++++++|++|+++|||||+++++|||+|+|++|||||+|.+..+|+||+||+||.|..+.+++|..+.+.
T Consensus 295 eR~~il~~Fr~G~~~VLVaTdv~arGIDip~V~~VInyd~P~s~~~yvqRiGRaGR~G~~G~ai~~~~~~~~ 366 (572)
T PRK04537 295 KRESLLNRFQKGQLEILVATDVAARGLHIDGVKYVYNYDLPFDAEDYVHRIGRTARLGEEGDAISFACERYA 366 (572)
T ss_pred HHHHHHHHHHcCCCeEEEEehhhhcCCCccCCCEEEEcCCCCCHHHHhhhhcccccCCCCceEEEEecHHHH
Confidence 478999999999999999999999999999999999999999999999999999999999998888655443
No 21
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=99.82 E-value=2.1e-20 Score=148.10 Aligned_cols=71 Identities=31% Similarity=0.443 Sum_probs=65.8
Q ss_pred ChHHHHHHHhcCCccEEEEcCccccccccCCCCEEEEeCCCCCHHHHHHHHhhcccCCCceEEEEeccCch
Q psy16582 1 MDVQTMLSFNRGITNILVATDVLEEGIDIQSCNLVIKFDPPQHTRSYVQSKAFTVVRHKAEQILSQYPKSE 71 (109)
Q Consensus 1 er~~~~~~F~~g~~~iLV~T~~~~~Gldi~~v~~Vi~~d~p~~~~~y~qr~GR~gR~g~~~~~~~~~~~~~ 71 (109)
+|++++++|++|+++|||||+++++|+|+|+|++|||||+|.+..+|+||+||+||.|+.+.+++++...+
T Consensus 283 ~R~~il~~Fr~G~~~ILVATdv~arGIDip~V~~VI~~d~P~~~e~yvqRiGRtGRaGr~G~ai~~v~~~e 353 (629)
T PRK11634 283 LREQTLERLKDGRLDILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRE 353 (629)
T ss_pred HHHHHHHHHhCCCCCEEEEcchHhcCCCcccCCEEEEeCCCCCHHHHHHHhccccCCCCcceEEEEechHH
Confidence 47889999999999999999999999999999999999999999999999999999999888888765443
No 22
>KOG0344|consensus
Probab=99.82 E-value=3.6e-20 Score=142.95 Aligned_cols=71 Identities=31% Similarity=0.470 Sum_probs=67.1
Q ss_pred ChHHHHHHHhcCCccEEEEcCccccccccCCCCEEEEeCCCCCHHHHHHHHhhcccCCCceEEEEeccCch
Q psy16582 1 MDVQTMLSFNRGITNILVATDVLEEGIDIQSCNLVIKFDPPQHTRSYVQSKAFTVVRHKAEQILSQYPKSE 71 (109)
Q Consensus 1 er~~~~~~F~~g~~~iLV~T~~~~~Gldi~~v~~Vi~~d~p~~~~~y~qr~GR~gR~g~~~~~~~~~~~~~ 71 (109)
+|++++++||.|++++||||++++||+|+.+++.|||||+|.+..+|+||+||+||+|+++.++.|+++++
T Consensus 426 qrde~~~~FR~g~IwvLicTdll~RGiDf~gvn~VInyD~p~s~~syihrIGRtgRag~~g~Aitfytd~d 496 (593)
T KOG0344|consen 426 QRDETMERFRIGKIWVLICTDLLARGIDFKGVNLVINYDFPQSDLSYIHRIGRTGRAGRSGKAITFYTDQD 496 (593)
T ss_pred HHHHHHHHHhccCeeEEEehhhhhccccccCcceEEecCCCchhHHHHHHhhccCCCCCCcceEEEecccc
Confidence 47899999999999999999999999999999999999999999999999999999999999998876643
No 23
>PTZ00424 helicase 45; Provisional
Probab=99.81 E-value=2e-20 Score=140.20 Aligned_cols=72 Identities=25% Similarity=0.379 Sum_probs=66.8
Q ss_pred ChHHHHHHHhcCCccEEEEcCccccccccCCCCEEEEeCCCCCHHHHHHHHhhcccCCCceEEEEeccCchH
Q psy16582 1 MDVQTMLSFNRGITNILVATDVLEEGIDIQSCNLVIKFDPPQHTRSYVQSKAFTVVRHKAEQILSQYPKSER 72 (109)
Q Consensus 1 er~~~~~~F~~g~~~iLV~T~~~~~Gldi~~v~~Vi~~d~p~~~~~y~qr~GR~gR~g~~~~~~~~~~~~~~ 72 (109)
+|+.++++|++|+++|||||+++++|+|+|++++||+||+|.+..+|+||+||+||.|..|.++.++.+++.
T Consensus 305 ~R~~i~~~f~~g~~~vLvaT~~l~~GiDip~v~~VI~~~~p~s~~~y~qr~GRagR~g~~G~~i~l~~~~~~ 376 (401)
T PTZ00424 305 DRDLIMREFRSGSTRVLITTDLLARGIDVQQVSLVINYDLPASPENYIHRIGRSGRFGRKGVAINFVTPDDI 376 (401)
T ss_pred HHHHHHHHHHcCCCCEEEEcccccCCcCcccCCEEEEECCCCCHHHEeecccccccCCCCceEEEEEcHHHH
Confidence 478899999999999999999999999999999999999999999999999999999998988888755443
No 24
>KOG0326|consensus
Probab=99.81 E-value=3.4e-20 Score=135.92 Aligned_cols=77 Identities=26% Similarity=0.404 Sum_probs=71.0
Q ss_pred ChHHHHHHHhcCCccEEEEcCccccccccCCCCEEEEeCCCCCHHHHHHHHhhcccCCCceEEEEeccCchHHHhhc
Q psy16582 1 MDVQTMLSFNRGITNILVATDVLEEGIDIQSCNLVIKFDPPQHTRSYVQSKAFTVVRHKAEQILSQYPKSERYLQYN 77 (109)
Q Consensus 1 er~~~~~~F~~g~~~iLV~T~~~~~Gldi~~v~~Vi~~d~p~~~~~y~qr~GR~gR~g~~~~~~~~~~~~~~~~~~~ 77 (109)
.|..++.+|++|.++.|||||++.||+|++.|++|||||+|.+.++|.||+||+||.|.-|.++.+...++.+..+.
T Consensus 360 hRNrVFHdFr~G~crnLVctDL~TRGIDiqavNvVINFDfpk~aEtYLHRIGRsGRFGhlGlAInLityedrf~L~~ 436 (459)
T KOG0326|consen 360 HRNRVFHDFRNGKCRNLVCTDLFTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRFGHLGLAINLITYEDRFNLYR 436 (459)
T ss_pred hhhhhhhhhhccccceeeehhhhhcccccceeeEEEecCCCCCHHHHHHHccCCccCCCcceEEEEEehhhhhhHHH
Confidence 37889999999999999999999999999999999999999999999999999999999999999977777764443
No 25
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.81 E-value=4.9e-20 Score=141.68 Aligned_cols=70 Identities=20% Similarity=0.242 Sum_probs=65.3
Q ss_pred ChHHHHHHHhcCCccEEEEcCccccccccCCCCEEEEeCCCCCHHHHHHHHhhcccCCCceEEEEeccCc
Q psy16582 1 MDVQTMLSFNRGITNILVATDVLEEGIDIQSCNLVIKFDPPQHTRSYVQSKAFTVVRHKAEQILSQYPKS 70 (109)
Q Consensus 1 er~~~~~~F~~g~~~iLV~T~~~~~Gldi~~v~~Vi~~d~p~~~~~y~qr~GR~gR~g~~~~~~~~~~~~ 70 (109)
+|++++++|++|+++|||||+++++|+|+|+|++|||||+|.+..+|+||+||+||.|..+.++.++...
T Consensus 264 eR~~i~~~F~~g~~~vLVaT~~~~~GID~p~V~~VI~~~~P~s~~~y~Qr~GRaGR~G~~~~~~~~~~~~ 333 (470)
T TIGR00614 264 ARDDVHHKFQRDEIQVVVATVAFGMGINKPDVRFVIHYSLPKSMESYYQESGRAGRDGLPSECHLFYAPA 333 (470)
T ss_pred HHHHHHHHHHcCCCcEEEEechhhccCCcccceEEEEeCCCCCHHHHHhhhcCcCCCCCCceEEEEechh
Confidence 5789999999999999999999999999999999999999999999999999999999888887776543
No 26
>KOG0332|consensus
Probab=99.81 E-value=3.6e-20 Score=137.66 Aligned_cols=70 Identities=20% Similarity=0.333 Sum_probs=65.7
Q ss_pred ChHHHHHHHhcCCccEEEEcCccccccccCCCCEEEEeCCC------CCHHHHHHHHhhcccCCCceEEEEeccCc
Q psy16582 1 MDVQTMLSFNRGITNILVATDVLEEGIDIQSCNLVIKFDPP------QHTRSYVQSKAFTVVRHKAEQILSQYPKS 70 (109)
Q Consensus 1 er~~~~~~F~~g~~~iLV~T~~~~~Gldi~~v~~Vi~~d~p------~~~~~y~qr~GR~gR~g~~~~~~~~~~~~ 70 (109)
+|..+++.||.|..+|||+|++++||+|++.|++|||||+| .+.+.|+||+||+||.|+.|.++.+....
T Consensus 368 ~R~~ii~~Fr~g~~kVLitTnV~ARGiDv~qVs~VvNydlP~~~~~~pD~etYlHRiGRtGRFGkkG~a~n~v~~~ 443 (477)
T KOG0332|consen 368 QRAAIIDRFREGKEKVLITTNVCARGIDVAQVSVVVNYDLPVKYTGEPDYETYLHRIGRTGRFGKKGLAINLVDDK 443 (477)
T ss_pred HHHHHHHHHhcCcceEEEEechhhcccccceEEEEEecCCccccCCCCCHHHHHHHhcccccccccceEEEeeccc
Confidence 58899999999999999999999999999999999999999 57999999999999999999999986543
No 27
>KOG0350|consensus
Probab=99.80 E-value=5.9e-20 Score=140.29 Aligned_cols=68 Identities=26% Similarity=0.506 Sum_probs=64.4
Q ss_pred hHHHHHHHhcCCccEEEEcCccccccccCCCCEEEEeCCCCCHHHHHHHHhhcccCCCceEEEEeccC
Q psy16582 2 DVQTMLSFNRGITNILVATDVLEEGIDIQSCNLVIKFDPPQHTRSYVQSKAFTVVRHKAEQILSQYPK 69 (109)
Q Consensus 2 r~~~~~~F~~g~~~iLV~T~~~~~Gldi~~v~~Vi~~d~p~~~~~y~qr~GR~gR~g~~~~~~~~~~~ 69 (109)
|.+.+++|..|++++|||||+++||+|+.+|+.|||||+|.+...|+||+||++|+|+.|.++.+...
T Consensus 472 r~k~l~~f~~g~i~vLIcSD~laRGiDv~~v~~VINYd~P~~~ktyVHR~GRTARAgq~G~a~tll~~ 539 (620)
T KOG0350|consen 472 RYKMLEKFAKGDINVLICSDALARGIDVNDVDNVINYDPPASDKTYVHRAGRTARAGQDGYAITLLDK 539 (620)
T ss_pred HHHHHHHHhcCCceEEEehhhhhcCCcccccceEeecCCCchhhHHHHhhcccccccCCceEEEeecc
Confidence 67889999999999999999999999999999999999999999999999999999999998888544
No 28
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=99.80 E-value=1.6e-19 Score=137.90 Aligned_cols=92 Identities=26% Similarity=0.369 Sum_probs=75.1
Q ss_pred ChHHHHHHHhcCCccEEEEcCccccccccCCCCEEEEeCCCCCHHHHHHHHhhcccCCCceEEEEe-ccC--chHHHhhc
Q psy16582 1 MDVQTMLSFNRGITNILVATDVLEEGIDIQSCNLVIKFDPPQHTRSYVQSKAFTVVRHKAEQILSQ-YPK--SERYLQYN 77 (109)
Q Consensus 1 er~~~~~~F~~g~~~iLV~T~~~~~Gldi~~v~~Vi~~d~p~~~~~y~qr~GR~gR~g~~~~~~~~-~~~--~~~~~~~~ 77 (109)
||.+++++|++|++++||||+++++|+|+|+|++||.|++-+|...++||.||+||. ++|.++++ +.. ++.|....
T Consensus 413 eQ~eiI~~Fr~Ge~nVLVaTSVgEEGLDIp~vDlVifYEpvpSeIR~IQR~GRTGR~-r~Grv~vLvt~gtrdeayy~~s 491 (542)
T COG1111 413 EQKEIIDQFRKGEYNVLVATSVGEEGLDIPEVDLVIFYEPVPSEIRSIQRKGRTGRK-RKGRVVVLVTEGTRDEAYYYSS 491 (542)
T ss_pred HHHHHHHHHhcCCceEEEEcccccccCCCCcccEEEEecCCcHHHHHHHhhCccccC-CCCeEEEEEecCchHHHHHHHH
Confidence 578999999999999999999999999999999999999999999999999999998 44454444 433 56666666
Q ss_pred chHHHHHHHHHhhcCc
Q psy16582 78 SPKINRLLQLLRRYNP 93 (109)
Q Consensus 78 ~~~~~~~~~~~~~~~~ 93 (109)
..+...+...+.....
T Consensus 492 ~rke~~m~e~i~~~~~ 507 (542)
T COG1111 492 RRKEQKMIESIRGLSL 507 (542)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 6666666666555554
No 29
>KOG0348|consensus
Probab=99.80 E-value=6.7e-20 Score=141.01 Aligned_cols=83 Identities=23% Similarity=0.401 Sum_probs=71.9
Q ss_pred ChHHHHHHHhcCCccEEEEcCccccccccCCCCEEEEeCCCCCHHHHHHHHhhcccCCCceEEEE-eccCchHHHhhcch
Q psy16582 1 MDVQTMLSFNRGITNILVATDVLEEGIDIQSCNLVIKFDPPQHTRSYVQSKAFTVVRHKAEQILS-QYPKSERYLQYNSP 79 (109)
Q Consensus 1 er~~~~~~F~~g~~~iLV~T~~~~~Gldi~~v~~Vi~~d~p~~~~~y~qr~GR~gR~g~~~~~~~-~~~~~~~~~~~~~~ 79 (109)
||+.++..|+...-.||.|||+++||+|+|+|++||+||+|.++.+|+||+||+.|.|..|..+. +.+.+.+|+.+..+
T Consensus 485 eRts~f~~Fs~~~~~VLLcTDVAaRGLDlP~V~~vVQYd~P~s~adylHRvGRTARaG~kG~alLfL~P~Eaey~~~l~~ 564 (708)
T KOG0348|consen 485 ERTSVFQEFSHSRRAVLLCTDVAARGLDLPHVGLVVQYDPPFSTADYLHRVGRTARAGEKGEALLFLLPSEAEYVNYLKK 564 (708)
T ss_pred HHHHHHHhhccccceEEEehhhhhccCCCCCcCeEEEeCCCCCHHHHHHHhhhhhhccCCCceEEEecccHHHHHHHHHh
Confidence 57889999998888899999999999999999999999999999999999999999997666554 57888888877655
Q ss_pred HHHH
Q psy16582 80 KINR 83 (109)
Q Consensus 80 ~~~~ 83 (109)
....
T Consensus 565 ~~~~ 568 (708)
T KOG0348|consen 565 HHIM 568 (708)
T ss_pred hcch
Confidence 4433
No 30
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B ....
Probab=99.80 E-value=1e-19 Score=108.41 Aligned_cols=58 Identities=33% Similarity=0.500 Sum_probs=56.1
Q ss_pred ChHHHHHHHhcCCccEEEEcCccccccccCCCCEEEEeCCCCCHHHHHHHHhhcccCC
Q psy16582 1 MDVQTMLSFNRGITNILVATDVLEEGIDIQSCNLVIKFDPPQHTRSYVQSKAFTVVRH 58 (109)
Q Consensus 1 er~~~~~~F~~g~~~iLV~T~~~~~Gldi~~v~~Vi~~d~p~~~~~y~qr~GR~gR~g 58 (109)
+|++++++|++|+.+|||||+++++|+|+|.+++||++++|++...|.|++||++|.|
T Consensus 21 ~r~~~~~~f~~~~~~vli~t~~~~~Gid~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~g 78 (78)
T PF00271_consen 21 ERQEILKKFNSGEIRVLIATDILGEGIDLPDASHVIFYDPPWSPEEYIQRIGRAGRIG 78 (78)
T ss_dssp HHHHHHHHHHTTSSSEEEESCGGTTSSTSTTESEEEESSSESSHHHHHHHHTTSSTTT
T ss_pred HHHHHHHHhhccCceEEEeeccccccccccccccccccccCCCHHHHHHHhhcCCCCC
Confidence 4789999999999999999999999999999999999999999999999999999986
No 31
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=99.80 E-value=1.2e-19 Score=146.07 Aligned_cols=68 Identities=18% Similarity=0.101 Sum_probs=64.6
Q ss_pred ChHHHHHHHhcCCccEEEEcCccccccccCCCCEEEEeCCCCCHHHHHHHHhhcccCCCceEEEEecc
Q psy16582 1 MDVQTMLSFNRGITNILVATDVLEEGIDIQSCNLVIKFDPPQHTRSYVQSKAFTVVRHKAEQILSQYP 68 (109)
Q Consensus 1 er~~~~~~F~~g~~~iLV~T~~~~~Gldi~~v~~Vi~~d~p~~~~~y~qr~GR~gR~g~~~~~~~~~~ 68 (109)
+|.+++++|++|++++|||||++++|||+|++++|||||+|.+..+|+||+||+||.|+.+.++.+..
T Consensus 317 eR~~ie~~f~~G~i~vLVaTd~lerGIDI~~vd~VI~~~~P~s~~~y~qRiGRaGR~G~~g~ai~v~~ 384 (742)
T TIGR03817 317 DRRELERALRDGELLGVATTNALELGVDISGLDAVVIAGFPGTRASLWQQAGRAGRRGQGALVVLVAR 384 (742)
T ss_pred HHHHHHHHHHcCCceEEEECchHhccCCcccccEEEEeCCCCCHHHHHHhccccCCCCCCcEEEEEeC
Confidence 58899999999999999999999999999999999999999999999999999999999888887754
No 32
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=99.79 E-value=1.4e-19 Score=148.97 Aligned_cols=69 Identities=17% Similarity=0.189 Sum_probs=65.4
Q ss_pred ChHHHHHHHhcCCccEEEEcCccccccccCCCCEEEEeCCCCCHHHHHHHHhhcccCCCceEEEEeccC
Q psy16582 1 MDVQTMLSFNRGITNILVATDVLEEGIDIQSCNLVIKFDPPQHTRSYVQSKAFTVVRHKAEQILSQYPK 69 (109)
Q Consensus 1 er~~~~~~F~~g~~~iLV~T~~~~~Gldi~~v~~Vi~~d~p~~~~~y~qr~GR~gR~g~~~~~~~~~~~ 69 (109)
+|+.++++|+.|+++|||||+++++|||+|+|++|||||+|.+.++|+||+||+||.|..+.++.++..
T Consensus 718 eR~~vqe~F~~Gei~VLVATdAFGMGIDkPDVR~VIHydlPkSiEsYyQriGRAGRDG~~g~cILlys~ 786 (1195)
T PLN03137 718 QRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYYSY 786 (1195)
T ss_pred HHHHHHHHHhcCCCcEEEEechhhcCCCccCCcEEEEcCCCCCHHHHHhhhcccCCCCCCceEEEEecH
Confidence 578999999999999999999999999999999999999999999999999999999998888888654
No 33
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=99.79 E-value=1.6e-19 Score=142.54 Aligned_cols=71 Identities=23% Similarity=0.323 Sum_probs=65.6
Q ss_pred ChHHHHHHHhcCCccEEEEcCccccccccCCCCEEEEeCCCCCHHHHHHHHhhcccCCCceEEEEeccCch
Q psy16582 1 MDVQTMLSFNRGITNILVATDVLEEGIDIQSCNLVIKFDPPQHTRSYVQSKAFTVVRHKAEQILSQYPKSE 71 (109)
Q Consensus 1 er~~~~~~F~~g~~~iLV~T~~~~~Gldi~~v~~Vi~~d~p~~~~~y~qr~GR~gR~g~~~~~~~~~~~~~ 71 (109)
+|++++++|+.|+++|||||+++++|+|+|+|++|||||+|.+..+|+||+||+||.|..+.++.++...+
T Consensus 274 ~R~~i~~~F~~g~~~VLVaT~a~~~GIDip~V~~VI~~d~P~s~~~y~Qr~GRaGR~G~~~~~ill~~~~d 344 (607)
T PRK11057 274 VRADVQEAFQRDDLQIVVATVAFGMGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPAD 344 (607)
T ss_pred HHHHHHHHHHCCCCCEEEEechhhccCCCCCcCEEEEeCCCCCHHHHHHHhhhccCCCCCceEEEEeCHHH
Confidence 47899999999999999999999999999999999999999999999999999999998888777765443
No 34
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=99.76 E-value=1.6e-18 Score=136.42 Aligned_cols=71 Identities=21% Similarity=0.310 Sum_probs=65.3
Q ss_pred ChHHHHHHHhcCCccEEEEcCccccccccCCCCEEEEeCCCCCHHHHHHHHhhcccCCCceEEEEeccCch
Q psy16582 1 MDVQTMLSFNRGITNILVATDVLEEGIDIQSCNLVIKFDPPQHTRSYVQSKAFTVVRHKAEQILSQYPKSE 71 (109)
Q Consensus 1 er~~~~~~F~~g~~~iLV~T~~~~~Gldi~~v~~Vi~~d~p~~~~~y~qr~GR~gR~g~~~~~~~~~~~~~ 71 (109)
+|+.++++|++|+++|||||+++++|+|+|+|++||+||+|.+..+|+|++||+||.|..+.++.++...+
T Consensus 262 ~R~~i~~~F~~g~~~vlVaT~a~~~GID~p~v~~VI~~~~p~s~~~y~Q~~GRaGR~G~~~~~il~~~~~d 332 (591)
T TIGR01389 262 VRAENQEDFLYDDVKVMVATNAFGMGIDKPNVRFVIHYDMPGNLESYYQEAGRAGRDGLPAEAILLYSPAD 332 (591)
T ss_pred HHHHHHHHHHcCCCcEEEEechhhccCcCCCCCEEEEcCCCCCHHHHhhhhccccCCCCCceEEEecCHHH
Confidence 47889999999999999999999999999999999999999999999999999999998877777765443
No 35
>KOG0354|consensus
Probab=99.73 E-value=1.3e-17 Score=132.49 Aligned_cols=68 Identities=32% Similarity=0.428 Sum_probs=61.2
Q ss_pred ChHHHHHHHhcCCccEEEEcCccccccccCCCCEEEEeCCCCCHHHHHHHHhhcccCCCceEEEEeccC
Q psy16582 1 MDVQTMLSFNRGITNILVATDVLEEGIDIQSCNLVIKFDPPQHTRSYVQSKAFTVVRHKAEQILSQYPK 69 (109)
Q Consensus 1 er~~~~~~F~~g~~~iLV~T~~~~~Gldi~~v~~Vi~~d~p~~~~~y~qr~GR~gR~g~~~~~~~~~~~ 69 (109)
+|++++++|++|++++||||+++++||||+.|++||-||...++..++||+|| ||...+..++.+...
T Consensus 462 ~Q~evl~~Fr~G~~NvLVATSV~EEGLDI~ec~lVIcYd~~snpIrmIQrrGR-gRa~ns~~vll~t~~ 529 (746)
T KOG0354|consen 462 EQKEVLDKFRDGEINVLVATSVAEEGLDIGECNLVICYDYSSNPIRMVQRRGR-GRARNSKCVLLTTGS 529 (746)
T ss_pred HHHHHHHHHhCCCccEEEEecchhccCCcccccEEEEecCCccHHHHHHHhcc-ccccCCeEEEEEcch
Confidence 47899999999999999999999999999999999999999999999999999 998666555555533
No 36
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=99.73 E-value=1.2e-17 Score=130.68 Aligned_cols=71 Identities=21% Similarity=0.295 Sum_probs=66.5
Q ss_pred ChHHHHHHHhcCCccEEEEcCccccccccCCCCEEEEeCCCCCHHHHHHHHhhcccCCCceEEEEeccCch
Q psy16582 1 MDVQTMLSFNRGITNILVATDVLEEGIDIQSCNLVIKFDPPQHTRSYVQSKAFTVVRHKAEQILSQYPKSE 71 (109)
Q Consensus 1 er~~~~~~F~~g~~~iLV~T~~~~~Gldi~~v~~Vi~~d~p~~~~~y~qr~GR~gR~g~~~~~~~~~~~~~ 71 (109)
||+.+.++|..++++|+|||.++++|||-|+|++|||||+|.+.++|+|.+|||||.|....++.++.+.+
T Consensus 268 eR~~~q~~f~~~~~~iiVAT~AFGMGIdKpdVRfViH~~lP~s~EsYyQE~GRAGRDG~~a~aill~~~~D 338 (590)
T COG0514 268 ERERVQQAFLNDEIKVMVATNAFGMGIDKPDVRFVIHYDLPGSIESYYQETGRAGRDGLPAEAILLYSPED 338 (590)
T ss_pred HHHHHHHHHhcCCCcEEEEeccccCccCCCCceEEEEecCCCCHHHHHHHHhhccCCCCcceEEEeecccc
Confidence 57889999999999999999999999999999999999999999999999999999999888888876544
No 37
>KOG0343|consensus
Probab=99.71 E-value=1.5e-17 Score=128.58 Aligned_cols=73 Identities=23% Similarity=0.370 Sum_probs=63.9
Q ss_pred hHHHHHHHhcCCccEEEEcCccccccccCCCCEEEEeCCCCCHHHHHHHHhhcccCCCceEEEE-eccCchHHH
Q psy16582 2 DVQTMLSFNRGITNILVATDVLEEGIDIQSCNLVIKFDPPQHTRSYVQSKAFTVVRHKAEQILS-QYPKSERYL 74 (109)
Q Consensus 2 r~~~~~~F~~g~~~iLV~T~~~~~Gldi~~v~~Vi~~d~p~~~~~y~qr~GR~gR~g~~~~~~~-~~~~~~~~~ 74 (109)
|.+++++|-...--||+|||+++||+|+|.|+|||++|+|.++.+|+||+||+.|.+..|..+. +++.+++++
T Consensus 354 R~ev~~~F~~~~~~vLF~TDv~aRGLDFpaVdwViQ~DCPedv~tYIHRvGRtAR~~~~G~sll~L~psEeE~~ 427 (758)
T KOG0343|consen 354 RIEVYKKFVRKRAVVLFCTDVAARGLDFPAVDWVIQVDCPEDVDTYIHRVGRTARYKERGESLLMLTPSEEEAM 427 (758)
T ss_pred HHHHHHHHHHhcceEEEeehhhhccCCCcccceEEEecCchhHHHHHHHhhhhhcccCCCceEEEEcchhHHHH
Confidence 6788999999899999999999999999999999999999999999999999999987666544 466663443
No 38
>KOG0347|consensus
Probab=99.71 E-value=3.8e-18 Score=131.76 Aligned_cols=70 Identities=23% Similarity=0.382 Sum_probs=65.3
Q ss_pred hHHHHHHHhcCCccEEEEcCccccccccCCCCEEEEeCCCCCHHHHHHHHhhcccCCCceEEEEeccCch
Q psy16582 2 DVQTMLSFNRGITNILVATDVLEEGIDIQSCNLVIKFDPPQHTRSYVQSKAFTVVRHKAEQILSQYPKSE 71 (109)
Q Consensus 2 r~~~~~~F~~g~~~iLV~T~~~~~Gldi~~v~~Vi~~d~p~~~~~y~qr~GR~gR~g~~~~~~~~~~~~~ 71 (109)
|-+.+++|++...-||||||+++||+|||+|+|||||.+|.+.+-|+||.||++|++..|..+.++.+.+
T Consensus 502 RLknLEkF~~~~~~VLiaTDVAARGLDIp~V~HVIHYqVPrtseiYVHRSGRTARA~~~Gvsvml~~P~e 571 (731)
T KOG0347|consen 502 RLKNLEKFKQSPSGVLIATDVAARGLDIPGVQHVIHYQVPRTSEIYVHRSGRTARANSEGVSVMLCGPQE 571 (731)
T ss_pred HHHhHHHHhcCCCeEEEeehhhhccCCCCCcceEEEeecCCccceeEecccccccccCCCeEEEEeChHH
Confidence 5678999999999999999999999999999999999999999999999999999999888888876655
No 39
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=99.71 E-value=3.7e-17 Score=133.92 Aligned_cols=71 Identities=25% Similarity=0.313 Sum_probs=65.2
Q ss_pred ChHHHHHHHhcCCccEEEEcCccccccccCCCCEEEEeCCCC-CHHHHHHHHhhcccCCCceEEEEeccCch
Q psy16582 1 MDVQTMLSFNRGITNILVATDVLEEGIDIQSCNLVIKFDPPQ-HTRSYVQSKAFTVVRHKAEQILSQYPKSE 71 (109)
Q Consensus 1 er~~~~~~F~~g~~~iLV~T~~~~~Gldi~~v~~Vi~~d~p~-~~~~y~qr~GR~gR~g~~~~~~~~~~~~~ 71 (109)
+|++++++|++|+++|||||+++++|+|+|++++||++|.|. +..+|+||+||+||.|+.+.++++++...
T Consensus 700 eRe~im~~F~~Gk~~ILVaT~iie~GIDIp~v~~VIi~~a~~~gls~l~Qr~GRvGR~g~~g~aill~~~~~ 771 (926)
T TIGR00580 700 ELEEVMLEFYKGEFQVLVCTTIIETGIDIPNANTIIIERADKFGLAQLYQLRGRVGRSKKKAYAYLLYPHQK 771 (926)
T ss_pred HHHHHHHHHHcCCCCEEEECChhhcccccccCCEEEEecCCCCCHHHHHHHhcCCCCCCCCeEEEEEECCcc
Confidence 478999999999999999999999999999999999999975 67899999999999999999998876543
No 40
>KOG0327|consensus
Probab=99.70 E-value=2.7e-17 Score=122.19 Aligned_cols=72 Identities=22% Similarity=0.387 Sum_probs=67.4
Q ss_pred ChHHHHHHHhcCCccEEEEcCccccccccCCCCEEEEeCCCCCHHHHHHHHhhcccCCCceEEEEeccCchH
Q psy16582 1 MDVQTMLSFNRGITNILVATDVLEEGIDIQSCNLVIKFDPPQHTRSYVQSKAFTVVRHKAEQILSQYPKSER 72 (109)
Q Consensus 1 er~~~~~~F~~g~~~iLV~T~~~~~Gldi~~v~~Vi~~d~p~~~~~y~qr~GR~gR~g~~~~~~~~~~~~~~ 72 (109)
+|+.+++.|++|+.+|||+|++++||+|+.++.+|||||+|....+|+||+||+||.|.+|..+++..+++.
T Consensus 301 ~R~~~~~ef~~gssrvlIttdl~argidv~~~slvinydlP~~~~~yihR~gr~gr~grkg~~in~v~~~d~ 372 (397)
T KOG0327|consen 301 ERDTLMREFRSGSSRVLITTDLLARGIDVQQVSLVVNYDLPARKENYIHRIGRAGRFGRKGVAINFVTEEDV 372 (397)
T ss_pred hhhHHHHHhhcCCceEEeeccccccccchhhcceeeeeccccchhhhhhhcccccccCCCceeeeeehHhhH
Confidence 578899999999999999999999999999999999999999999999999999999999999998655433
No 41
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=99.70 E-value=5.9e-17 Score=129.55 Aligned_cols=68 Identities=21% Similarity=0.248 Sum_probs=63.3
Q ss_pred ChHHHHHHHhcCCccEEEEcCccccccccCCCCEEEEeCCCC-CHHHHHHHHhhcccCCCceEEEEecc
Q psy16582 1 MDVQTMLSFNRGITNILVATDVLEEGIDIQSCNLVIKFDPPQ-HTRSYVQSKAFTVVRHKAEQILSQYP 68 (109)
Q Consensus 1 er~~~~~~F~~g~~~iLV~T~~~~~Gldi~~v~~Vi~~d~p~-~~~~y~qr~GR~gR~g~~~~~~~~~~ 68 (109)
||++++++|++|+++|||||+++++|+|+|++++||++|.|. +...|.|++||+||.|..+.++.++.
T Consensus 519 eR~~i~~~F~~g~~~ILVaT~vie~GiDip~v~~VIi~~~~r~gls~lhQ~~GRvGR~g~~g~~ill~~ 587 (681)
T PRK10917 519 EKDAVMAAFKAGEIDILVATTVIEVGVDVPNATVMVIENAERFGLAQLHQLRGRVGRGAAQSYCVLLYK 587 (681)
T ss_pred HHHHHHHHHHcCCCCEEEECcceeeCcccCCCcEEEEeCCCCCCHHHHHHHhhcccCCCCceEEEEEEC
Confidence 588999999999999999999999999999999999999997 57888899999999999888888863
No 42
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=99.70 E-value=6.2e-17 Score=128.43 Aligned_cols=67 Identities=24% Similarity=0.289 Sum_probs=62.8
Q ss_pred ChHHHHHHHhcCCccEEEEcCccccccccCCCCEEEEeCCCC-CHHHHHHHHhhcccCCCceEEEEec
Q psy16582 1 MDVQTMLSFNRGITNILVATDVLEEGIDIQSCNLVIKFDPPQ-HTRSYVQSKAFTVVRHKAEQILSQY 67 (109)
Q Consensus 1 er~~~~~~F~~g~~~iLV~T~~~~~Gldi~~v~~Vi~~d~p~-~~~~y~qr~GR~gR~g~~~~~~~~~ 67 (109)
||++++++|++|+++|||||+++++|+|+|++++||++|.|. +..+|.|++||+||.|..+.++.++
T Consensus 496 eR~~i~~~F~~g~~~ILVaT~vie~GvDiP~v~~VIi~~~~r~gls~lhQ~~GRvGR~g~~g~~il~~ 563 (630)
T TIGR00643 496 EKEAVMEEFREGEVDILVATTVIEVGVDVPNATVMVIEDAERFGLSQLHQLRGRVGRGDHQSYCLLVY 563 (630)
T ss_pred HHHHHHHHHHcCCCCEEEECceeecCcccCCCcEEEEeCCCcCCHHHHHHHhhhcccCCCCcEEEEEE
Confidence 578999999999999999999999999999999999999996 6788899999999999988888876
No 43
>PRK13767 ATP-dependent helicase; Provisional
Probab=99.68 E-value=8.1e-17 Score=131.61 Aligned_cols=65 Identities=23% Similarity=0.348 Sum_probs=58.5
Q ss_pred ChHHHHHHHhcCCccEEEEcCccccccccCCCCEEEEeCCCCCHHHHHHHHhhcccCC-C--ceEEEE
Q psy16582 1 MDVQTMLSFNRGITNILVATDVLEEGIDIQSCNLVIKFDPPQHTRSYVQSKAFTVVRH-K--AEQILS 65 (109)
Q Consensus 1 er~~~~~~F~~g~~~iLV~T~~~~~Gldi~~v~~Vi~~d~p~~~~~y~qr~GR~gR~g-~--~~~~~~ 65 (109)
+|.+++++|++|++++||||+++++|||+|++++||+||.|.+..+|+||+||+||.+ . .+.++.
T Consensus 328 ~R~~ve~~fk~G~i~vLVaTs~Le~GIDip~Vd~VI~~~~P~sv~~ylQRiGRaGR~~g~~~~g~ii~ 395 (876)
T PRK13767 328 VRLEVEEKLKRGELKVVVSSTSLELGIDIGYIDLVVLLGSPKSVSRLLQRIGRAGHRLGEVSKGRIIV 395 (876)
T ss_pred HHHHHHHHHHcCCCeEEEECChHHhcCCCCCCcEEEEeCCCCCHHHHHHhcccCCCCCCCCCcEEEEE
Confidence 4788999999999999999999999999999999999999999999999999999863 2 344444
No 44
>KOG0346|consensus
Probab=99.67 E-value=1.2e-16 Score=121.09 Aligned_cols=74 Identities=27% Similarity=0.443 Sum_probs=65.8
Q ss_pred hHHHHHHHhcCCccEEEEcCc-----------------------------------cccccccCCCCEEEEeCCCCCHHH
Q psy16582 2 DVQTMLSFNRGITNILVATDV-----------------------------------LEEGIDIQSCNLVIKFDPPQHTRS 46 (109)
Q Consensus 2 r~~~~~~F~~g~~~iLV~T~~-----------------------------------~~~Gldi~~v~~Vi~~d~p~~~~~ 46 (109)
|--++++|..|.++|+||||. .+||||+.+|..|+|||+|.++.+
T Consensus 307 R~Hii~QFNkG~YdivIAtD~s~~~~~~eee~kgk~~e~~~kndkkskkK~D~E~GVsRGIDF~~V~~VlNFD~P~t~~s 386 (569)
T KOG0346|consen 307 RCHIIEQFNKGLYDIVIATDDSADGDKLEEEVKGKSDEKNPKNDKKSKKKLDKESGVSRGIDFHHVSNVLNFDFPETVTS 386 (569)
T ss_pred hhhHHHHhhCcceeEEEEccCccchhhhhccccccccccCCCCccccccccCchhchhccccchheeeeeecCCCCchHH
Confidence 456899999999999999992 238999999999999999999999
Q ss_pred HHHHHhhcccCCCceEEEEeccCchHHHh
Q psy16582 47 YVQSKAFTVVRHKAEQILSQYPKSERYLQ 75 (109)
Q Consensus 47 y~qr~GR~gR~g~~~~~~~~~~~~~~~~~ 75 (109)
|+||+||++|.+++|.++.|+.+.+.+..
T Consensus 387 YIHRvGRTaRg~n~GtalSfv~P~e~~g~ 415 (569)
T KOG0346|consen 387 YIHRVGRTARGNNKGTALSFVSPKEEFGK 415 (569)
T ss_pred HHHhccccccCCCCCceEEEecchHHhhh
Confidence 99999999999999999999766665543
No 45
>PRK10689 transcription-repair coupling factor; Provisional
Probab=99.66 E-value=2.7e-16 Score=131.06 Aligned_cols=70 Identities=23% Similarity=0.206 Sum_probs=61.5
Q ss_pred ChHHHHHHHhcCCccEEEEcCccccccccCCCCEEEEeCCC-CCHHHHHHHHhhcccCCCceEEEEeccCc
Q psy16582 1 MDVQTMLSFNRGITNILVATDVLEEGIDIQSCNLVIKFDPP-QHTRSYVQSKAFTVVRHKAEQILSQYPKS 70 (109)
Q Consensus 1 er~~~~~~F~~g~~~iLV~T~~~~~Gldi~~v~~Vi~~d~p-~~~~~y~qr~GR~gR~g~~~~~~~~~~~~ 70 (109)
+|++++++|++|+++|||||+++++|+|+|++++||..+.. .+..+|+||+||+||.|+.+.++++++..
T Consensus 849 eRe~im~~Fr~Gk~~VLVaTdIierGIDIP~v~~VIi~~ad~fglaq~~Qr~GRvGR~g~~g~a~ll~~~~ 919 (1147)
T PRK10689 849 ELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHP 919 (1147)
T ss_pred HHHHHHHHHHhcCCCEEEECchhhcccccccCCEEEEecCCCCCHHHHHHHhhccCCCCCceEEEEEeCCC
Confidence 47899999999999999999999999999999999955443 35678999999999999999999887654
No 46
>KOG0334|consensus
Probab=99.66 E-value=1.9e-16 Score=128.51 Aligned_cols=74 Identities=27% Similarity=0.435 Sum_probs=67.4
Q ss_pred ChHHHHHHHhcCCccEEEEcCccccccccCCCCEEEEeCCCCCHHHHHHHHhhcccCCCceEEEEeccC-chHHH
Q psy16582 1 MDVQTMLSFNRGITNILVATDVLEEGIDIQSCNLVIKFDPPQHTRSYVQSKAFTVVRHKAEQILSQYPK-SERYL 74 (109)
Q Consensus 1 er~~~~~~F~~g~~~iLV~T~~~~~Gldi~~v~~Vi~~d~p~~~~~y~qr~GR~gR~g~~~~~~~~~~~-~~~~~ 74 (109)
+|..++++||+|.+++||||+++++|+|+.++.+|||||+|.+..+|+||+||+||.|.++.+++|..+ +..+.
T Consensus 651 dR~sti~dfK~~~~~LLvaTsvvarGLdv~~l~Lvvnyd~pnh~edyvhR~gRTgragrkg~AvtFi~p~q~~~a 725 (997)
T KOG0334|consen 651 DRSSTIEDFKNGVVNLLVATSVVARGLDVKELILVVNYDFPNHYEDYVHRVGRTGRAGRKGAAVTFITPDQLKYA 725 (997)
T ss_pred HHHhHHHHHhccCceEEEehhhhhcccccccceEEEEcccchhHHHHHHHhcccccCCccceeEEEeChHHhhhH
Confidence 478899999999999999999999999999999999999999999999999999999998888888655 34443
No 47
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=99.66 E-value=1.8e-16 Score=130.07 Aligned_cols=67 Identities=15% Similarity=0.119 Sum_probs=61.1
Q ss_pred ChHHHHHHHhcC--CccEEEEcCccccccccCCCCEEEEeCCCCCHHHHHHHHhhcccCCCceEEEEec
Q psy16582 1 MDVQTMLSFNRG--ITNILVATDVLEEGIDIQSCNLVIKFDPPQHTRSYVQSKAFTVVRHKAEQILSQY 67 (109)
Q Consensus 1 er~~~~~~F~~g--~~~iLV~T~~~~~Gldi~~v~~Vi~~d~p~~~~~y~qr~GR~gR~g~~~~~~~~~ 67 (109)
||+++++.|+++ .++|||||+++++|+|++.+++|||||+|+++..|.||+||++|.|+++.+..+.
T Consensus 532 eR~~~~~~F~~~~~~~~VLIsTdvgseGlNlq~a~~VInfDlP~nP~~~eQRIGR~~RiGQ~~~V~i~~ 600 (956)
T PRK04914 532 ERDRAAAYFADEEDGAQVLLCSEIGSEGRNFQFASHLVLFDLPFNPDLLEQRIGRLDRIGQKHDIQIHV 600 (956)
T ss_pred HHHHHHHHHhcCCCCccEEEechhhccCCCcccccEEEEecCCCCHHHHHHHhcccccCCCCceEEEEE
Confidence 588999999984 6999999999999999999999999999999999999999999999877665543
No 48
>PRK13766 Hef nuclease; Provisional
Probab=99.65 E-value=8e-16 Score=124.06 Aligned_cols=67 Identities=30% Similarity=0.408 Sum_probs=59.8
Q ss_pred ChHHHHHHHhcCCccEEEEcCccccccccCCCCEEEEeCCCCCHHHHHHHHhhcccCCCceEEEEec
Q psy16582 1 MDVQTMLSFNRGITNILVATDVLEEGIDIQSCNLVIKFDPPQHTRSYVQSKAFTVVRHKAEQILSQY 67 (109)
Q Consensus 1 er~~~~~~F~~g~~~iLV~T~~~~~Gldi~~v~~Vi~~d~p~~~~~y~qr~GR~gR~g~~~~~~~~~ 67 (109)
+|.+++++|++|++++||||+++++|+|+|+|++||+||+|++...|+||+||+||.|.+..++..+
T Consensus 411 ~r~~~~~~F~~g~~~vLvaT~~~~eGldi~~~~~VI~yd~~~s~~r~iQR~GR~gR~~~~~v~~l~~ 477 (773)
T PRK13766 411 EQIEILDKFRAGEFNVLVSTSVAEEGLDIPSVDLVIFYEPVPSEIRSIQRKGRTGRQEEGRVVVLIA 477 (773)
T ss_pred HHHHHHHHHHcCCCCEEEECChhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccCcCCCCEEEEEEe
Confidence 4678999999999999999999999999999999999999999999999999999987654444333
No 49
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=99.65 E-value=6.4e-16 Score=123.10 Aligned_cols=71 Identities=21% Similarity=0.290 Sum_probs=63.2
Q ss_pred ChHHHHHHHhcCCccEEEEcCccccccccCCCCEEEEeC-----CCCCHHHHHHHHhhcccCCCceEEEEeccCchH
Q psy16582 1 MDVQTMLSFNRGITNILVATDVLEEGIDIQSCNLVIKFD-----PPQHTRSYVQSKAFTVVRHKAEQILSQYPKSER 72 (109)
Q Consensus 1 er~~~~~~F~~g~~~iLV~T~~~~~Gldi~~v~~Vi~~d-----~p~~~~~y~qr~GR~gR~g~~~~~~~~~~~~~~ 72 (109)
+|.+++++|+.|++.|||||+++++|+|+|++++||++| .|.+..+|+||+||+||. ..|.++.+.+..+.
T Consensus 480 eR~~~l~~fr~G~i~VLV~t~~L~rGfDiP~v~lVvi~DadifG~p~~~~~~iqriGRagR~-~~G~vi~~~~~~~~ 555 (655)
T TIGR00631 480 ERVEIIRDLRLGEFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSERSLIQTIGRAARN-VNGKVIMYADKITD 555 (655)
T ss_pred HHHHHHHHHhcCCceEEEEcChhcCCeeeCCCcEEEEeCcccccCCCCHHHHHHHhcCCCCC-CCCEEEEEEcCCCH
Confidence 478899999999999999999999999999999999998 899999999999999998 45667776655443
No 50
>smart00490 HELICc helicase superfamily c-terminal domain.
Probab=99.65 E-value=3.5e-16 Score=92.42 Aligned_cols=58 Identities=34% Similarity=0.481 Sum_probs=55.4
Q ss_pred ChHHHHHHHhcCCccEEEEcCccccccccCCCCEEEEeCCCCCHHHHHHHHhhcccCC
Q psy16582 1 MDVQTMLSFNRGITNILVATDVLEEGIDIQSCNLVIKFDPPQHTRSYVQSKAFTVVRH 58 (109)
Q Consensus 1 er~~~~~~F~~g~~~iLV~T~~~~~Gldi~~v~~Vi~~d~p~~~~~y~qr~GR~gR~g 58 (109)
+|.++++.|+.|...+||+|+++++|+|+|++++||.+++|++...|.|++||++|.|
T Consensus 25 ~r~~~~~~f~~~~~~vli~t~~~~~Gi~~~~~~~vi~~~~~~~~~~~~Q~~gR~~R~g 82 (82)
T smart00490 25 EREEILEKFNNGKIKVLVATDVAERGLDLPGVDLVIIYDLPWSPASYIQRIGRAGRAG 82 (82)
T ss_pred HHHHHHHHHHcCCCeEEEECChhhCCcChhcCCEEEEeCCCCCHHHHHHhhcccccCC
Confidence 4678999999999999999999999999999999999999999999999999999975
No 51
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=99.64 E-value=5e-16 Score=123.21 Aligned_cols=74 Identities=18% Similarity=0.110 Sum_probs=65.0
Q ss_pred hHHHHHHHhcCCccEEEEcCccccccccC---CCC-----EEEEeCCCCCHHHHHHHHhhcccCCCceEEEEeccCchHH
Q psy16582 2 DVQTMLSFNRGITNILVATDVLEEGIDIQ---SCN-----LVIKFDPPQHTRSYVQSKAFTVVRHKAEQILSQYPKSERY 73 (109)
Q Consensus 2 r~~~~~~F~~g~~~iLV~T~~~~~Gldi~---~v~-----~Vi~~d~p~~~~~y~qr~GR~gR~g~~~~~~~~~~~~~~~ 73 (109)
++..+..|+.+...|+||||+++||+||+ +|. +||+||+|.+...|.||+||+||.|..|.++++...++..
T Consensus 510 rE~~ii~~ag~~g~VlVATdmAgRGtDI~l~~~V~~~GGLhVI~~d~P~s~r~y~hr~GRTGRqG~~G~s~~~is~eD~l 589 (656)
T PRK12898 510 EEAAIVARAGQRGRITVATNMAGRGTDIKLEPGVAARGGLHVILTERHDSARIDRQLAGRCGRQGDPGSYEAILSLEDDL 589 (656)
T ss_pred HHHHHHHHcCCCCcEEEEccchhcccCcCCccchhhcCCCEEEEcCCCCCHHHHHHhcccccCCCCCeEEEEEechhHHH
Confidence 56677778888888999999999999999 676 9999999999999999999999999999998887666655
Q ss_pred Hh
Q psy16582 74 LQ 75 (109)
Q Consensus 74 ~~ 75 (109)
+.
T Consensus 590 ~~ 591 (656)
T PRK12898 590 LQ 591 (656)
T ss_pred HH
Confidence 53
No 52
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=99.62 E-value=9.5e-16 Score=129.64 Aligned_cols=58 Identities=28% Similarity=0.268 Sum_probs=55.7
Q ss_pred ChHHHHHHHhcCCccEEEEcCccccccccCCCCEEEEeCCCCCHHHHHHHHhhcccCC
Q psy16582 1 MDVQTMLSFNRGITNILVATDVLEEGIDIQSCNLVIKFDPPQHTRSYVQSKAFTVVRH 58 (109)
Q Consensus 1 er~~~~~~F~~g~~~iLV~T~~~~~Gldi~~v~~Vi~~d~p~~~~~y~qr~GR~gR~g 58 (109)
+|..+.++|++|++++||||+.+++|||+++|++||||+.|.+..+|+||+||+||..
T Consensus 315 eR~~IE~~fK~G~LrvLVATssLELGIDIg~VDlVIq~gsP~sVas~LQRiGRAGR~~ 372 (1490)
T PRK09751 315 QRAITEQALKSGELRCVVATSSLELGIDMGAVDLVIQVATPLSVASGLQRIGRAGHQV 372 (1490)
T ss_pred HHHHHHHHHHhCCceEEEeCcHHHccCCcccCCEEEEeCCCCCHHHHHHHhCCCCCCC
Confidence 4789999999999999999999999999999999999999999999999999999963
No 53
>PHA02653 RNA helicase NPH-II; Provisional
Probab=99.62 E-value=7.1e-16 Score=123.08 Aligned_cols=68 Identities=15% Similarity=0.122 Sum_probs=60.3
Q ss_pred HHHHHHH-hcCCccEEEEcCccccccccCCCCEEEEeC---CCC---------CHHHHHHHHhhcccCCCceEEEEeccC
Q psy16582 3 VQTMLSF-NRGITNILVATDVLEEGIDIQSCNLVIKFD---PPQ---------HTRSYVQSKAFTVVRHKAEQILSQYPK 69 (109)
Q Consensus 3 ~~~~~~F-~~g~~~iLV~T~~~~~Gldi~~v~~Vi~~d---~p~---------~~~~y~qr~GR~gR~g~~~~~~~~~~~ 69 (109)
++++++| ++|+.+||||||++++|+|+|+|++||++| .|. |.++|+||+||+||. .+|.++.++.+
T Consensus 435 eq~l~~ff~~gk~kILVATdIAERGIDIp~V~~VID~G~~k~p~~~~g~~~~iSkasa~QRaGRAGR~-~~G~c~rLyt~ 513 (675)
T PHA02653 435 DEILEKVYSSKNPSIIISTPYLESSVTIRNATHVYDTGRVYVPEPFGGKEMFISKSMRTQRKGRVGRV-SPGTYVYFYDL 513 (675)
T ss_pred HHHHHHHhccCceeEEeccChhhccccccCeeEEEECCCccCCCcccCcccccCHHHHHHhccCcCCC-CCCeEEEEECH
Confidence 4677888 799999999999999999999999999999 665 888999999999999 67888888766
Q ss_pred ch
Q psy16582 70 SE 71 (109)
Q Consensus 70 ~~ 71 (109)
++
T Consensus 514 ~~ 515 (675)
T PHA02653 514 DL 515 (675)
T ss_pred HH
Confidence 54
No 54
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=99.61 E-value=1.5e-15 Score=121.01 Aligned_cols=68 Identities=24% Similarity=0.336 Sum_probs=61.3
Q ss_pred ChHHHHHHHhcCCccEEEEcCccccccccCCCCEEEEeCC-----CCCHHHHHHHHhhcccCCCceEEEEeccC
Q psy16582 1 MDVQTMLSFNRGITNILVATDVLEEGIDIQSCNLVIKFDP-----PQHTRSYVQSKAFTVVRHKAEQILSQYPK 69 (109)
Q Consensus 1 er~~~~~~F~~g~~~iLV~T~~~~~Gldi~~v~~Vi~~d~-----p~~~~~y~qr~GR~gR~g~~~~~~~~~~~ 69 (109)
+|.+++++|+.|++.|||||+++++|+|+|++++||++|. |.+..+|+||+||+||. ..|.++.++..
T Consensus 484 ~R~~~l~~f~~g~i~vlV~t~~L~rGfdlp~v~lVii~d~eifG~~~~~~~yiqr~GR~gR~-~~G~~i~~~~~ 556 (652)
T PRK05298 484 ERVEIIRDLRLGEFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARN-VNGKVILYADK 556 (652)
T ss_pred HHHHHHHHHHcCCceEEEEeCHHhCCccccCCcEEEEeCCcccccCCCHHHHHHHhccccCC-CCCEEEEEecC
Confidence 4788999999999999999999999999999999999885 78999999999999996 56777777654
No 55
>KOG4284|consensus
Probab=99.61 E-value=1.1e-15 Score=120.30 Aligned_cols=72 Identities=19% Similarity=0.242 Sum_probs=65.8
Q ss_pred ChHHHHHHHhcCCccEEEEcCccccccccCCCCEEEEeCCCCCHHHHHHHHhhcccCCCceEEEEeccCchH
Q psy16582 1 MDVQTMLSFNRGITNILVATDVLEEGIDIQSCNLVIKFDPPQHTRSYVQSKAFTVVRHKAEQILSQYPKSER 72 (109)
Q Consensus 1 er~~~~~~F~~g~~~iLV~T~~~~~Gldi~~v~~Vi~~d~p~~~~~y~qr~GR~gR~g~~~~~~~~~~~~~~ 72 (109)
+|..+++++|.-.++|||+||+.+||||-++|++|||.|.|.+-..|.||+||+||.|..|..+.++..++.
T Consensus 310 ~Rl~a~~~lr~f~~rILVsTDLtaRGIDa~~vNLVVNiD~p~d~eTY~HRIGRAgRFG~~G~aVT~~~~~~e 381 (980)
T KOG4284|consen 310 DRLLAVDQLRAFRVRILVSTDLTARGIDADNVNLVVNIDAPADEETYFHRIGRAGRFGAHGAAVTLLEDERE 381 (980)
T ss_pred HHHHHHHHhhhceEEEEEecchhhccCCccccceEEecCCCcchHHHHHHhhhcccccccceeEEEeccchh
Confidence 466788899999999999999999999999999999999999999999999999999999998888655444
No 56
>KOG0339|consensus
Probab=99.60 E-value=2.7e-15 Score=115.48 Aligned_cols=87 Identities=20% Similarity=0.246 Sum_probs=73.5
Q ss_pred ChHHHHHHHhcCCccEEEEcCccccccccCCCCEEEEeCCCCCHHHHHHHHhhcccCCCceEEEEecc-CchHHHhhcch
Q psy16582 1 MDVQTMLSFNRGITNILVATDVLEEGIDIQSCNLVIKFDPPQHTRSYVQSKAFTVVRHKAEQILSQYP-KSERYLQYNSP 79 (109)
Q Consensus 1 er~~~~~~F~~g~~~iLV~T~~~~~Gldi~~v~~Vi~~d~p~~~~~y~qr~GR~gR~g~~~~~~~~~~-~~~~~~~~~~~ 79 (109)
||.+++.+|+.+.+.|||+||++.||+|||++..|||||+-.+...|.||+||+||.|..|.++.+.. ++..+
T Consensus 506 ~rn~~ls~fKkk~~~VlvatDvaargldI~~ikTVvnyD~ardIdththrigrtgRag~kGvayTlvTeKDa~f------ 579 (731)
T KOG0339|consen 506 ERNEVLSKFKKKRKPVLVATDVAARGLDIPSIKTVVNYDFARDIDTHTHRIGRTGRAGEKGVAYTLVTEKDAEF------ 579 (731)
T ss_pred HHHHHHHHHhhcCCceEEEeeHhhcCCCccccceeecccccchhHHHHHHhhhcccccccceeeEEechhhHHH------
Confidence 58899999999999999999999999999999999999999999999999999999999888888743 44333
Q ss_pred HHHHHHHHHhhcCcc
Q psy16582 80 KINRLLQLLRRYNPD 94 (109)
Q Consensus 80 ~~~~~~~~~~~~~~~ 94 (109)
...+...|+-..+.
T Consensus 580 -AG~LVnnLe~agQn 593 (731)
T KOG0339|consen 580 -AGHLVNNLEGAGQN 593 (731)
T ss_pred -hhHHHHHHhhcccc
Confidence 34445555555543
No 57
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=99.58 E-value=5.2e-15 Score=119.44 Aligned_cols=63 Identities=17% Similarity=0.145 Sum_probs=56.6
Q ss_pred CccEEEEcCcccccccc---CCCC-----EEEEeCCCCCHHHHHHHHhhcccCCCceEEEEeccCchHHHh
Q psy16582 13 ITNILVATDVLEEGIDI---QSCN-----LVIKFDPPQHTRSYVQSKAFTVVRHKAEQILSQYPKSERYLQ 75 (109)
Q Consensus 13 ~~~iLV~T~~~~~Gldi---~~v~-----~Vi~~d~p~~~~~y~qr~GR~gR~g~~~~~~~~~~~~~~~~~ 75 (109)
..+|+|||++++||+|+ |.|. +||+||+|.+...|.||+||+||.|.+|.++++...++..+.
T Consensus 476 ~g~VlIATdmAgRG~DI~l~~~V~~~GGL~VI~~d~p~s~r~y~qr~GRtGR~G~~G~s~~~is~eD~l~~ 546 (790)
T PRK09200 476 KGAVTVATNMAGRGTDIKLGEGVHELGGLAVIGTERMESRRVDLQLRGRSGRQGDPGSSQFFISLEDDLLK 546 (790)
T ss_pred CCeEEEEccchhcCcCCCcccccccccCcEEEeccCCCCHHHHHHhhccccCCCCCeeEEEEEcchHHHHH
Confidence 44799999999999999 6998 999999999999999999999999999998888776666553
No 58
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=99.58 E-value=3.5e-15 Score=95.21 Aligned_cols=65 Identities=28% Similarity=0.406 Sum_probs=60.1
Q ss_pred ChHHHHHHHhcCCccEEEEcCccccccccCCCCEEEEeCCCCCHHHHHHHHhhcccCCCceEEEE
Q psy16582 1 MDVQTMLSFNRGITNILVATDVLEEGIDIQSCNLVIKFDPPQHTRSYVQSKAFTVVRHKAEQILS 65 (109)
Q Consensus 1 er~~~~~~F~~g~~~iLV~T~~~~~Gldi~~v~~Vi~~d~p~~~~~y~qr~GR~gR~g~~~~~~~ 65 (109)
++..+++.|++|...+|++|+++++|+|+|.+++||.+++|++...|.|++||++|.|..+.++.
T Consensus 66 ~~~~~~~~f~~~~~~ili~t~~~~~G~d~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~~~~~~~~~ 130 (131)
T cd00079 66 EREEVLKDFREGEIVVLVATDVIARGIDLPNVSVVINYDLPWSPSSYLQRIGRAGRAGQKGTAIL 130 (131)
T ss_pred HHHHHHHHHHcCCCcEEEEcChhhcCcChhhCCEEEEeCCCCCHHHheecccccccCCCCceEEe
Confidence 36788999999999999999999999999999999999999999999999999999997666543
No 59
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.57 E-value=2.5e-15 Score=122.08 Aligned_cols=70 Identities=13% Similarity=0.141 Sum_probs=61.9
Q ss_pred ChHHHHHHHhcCCccEEEEcCccccccccCCCCEEEEeCCCCC------------------HHHHHHHHhhcccCCCceE
Q psy16582 1 MDVQTMLSFNRGITNILVATDVLEEGIDIQSCNLVIKFDPPQH------------------TRSYVQSKAFTVVRHKAEQ 62 (109)
Q Consensus 1 er~~~~~~F~~g~~~iLV~T~~~~~Gldi~~v~~Vi~~d~p~~------------------~~~y~qr~GR~gR~g~~~~ 62 (109)
+|+++++.|++|+.+||||||++++|||+|+|++||++++|.. -.+|.||.||+||. ..|.
T Consensus 250 eq~~~~~~~~~G~rkVlVATnIAErgItIp~V~~VID~Gl~r~~~yd~~~g~~~L~~~~iSkasa~QR~GRAGR~-~~G~ 328 (819)
T TIGR01970 250 AQDRAIKPDPQGRRKVVLATNIAETSLTIEGIRVVIDSGLARVARFDPKTGITRLETVRISQASATQRAGRAGRL-EPGV 328 (819)
T ss_pred HHHHHHhhcccCCeEEEEecchHhhcccccCceEEEEcCcccccccccccCCceeeEEEECHHHHHhhhhhcCCC-CCCE
Confidence 4788999999999999999999999999999999999999853 35799999999999 7788
Q ss_pred EEEeccCch
Q psy16582 63 ILSQYPKSE 71 (109)
Q Consensus 63 ~~~~~~~~~ 71 (109)
++.++++++
T Consensus 329 cyrL~t~~~ 337 (819)
T TIGR01970 329 CYRLWSEEQ 337 (819)
T ss_pred EEEeCCHHH
Confidence 888876543
No 60
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=99.57 E-value=9e-15 Score=108.48 Aligned_cols=61 Identities=18% Similarity=0.214 Sum_probs=52.4
Q ss_pred HHHHHHhcCCccEEEEcCccccccccCCCCEEEEeCCCCCHHHHHHHHhhcccCCCc----eEEEEec
Q psy16582 4 QTMLSFNRGITNILVATDVLEEGIDIQSCNLVIKFDPPQHTRSYVQSKAFTVVRHKA----EQILSQY 67 (109)
Q Consensus 4 ~~~~~F~~g~~~iLV~T~~~~~Gldi~~v~~Vi~~d~p~~~~~y~qr~GR~gR~g~~----~~~~~~~ 67 (109)
+++++|++|+.++||||+++++|+|++ +++||+++.| ..+|+||+||+||.|++ +.++.+.
T Consensus 269 ~~~~~f~~~~~~ilvaT~~~~~GiDi~-~~~vi~~~~~--~~~~iqr~GR~gR~g~~~~~~~~~~v~~ 333 (358)
T TIGR01587 269 ELLEEMKKNEKFVIVATQVIEASLDIS-ADVMITELAP--IDSLIQRLGRLHRYGRKNGENFEVYIIT 333 (358)
T ss_pred HHHHHhcCCCCeEEEECcchhceeccC-CCEEEEcCCC--HHHHHHHhccccCCCCCCCCCCeEEEEe
Confidence 468999999999999999999999995 8899998877 68999999999998753 3566654
No 61
>PRK02362 ski2-like helicase; Provisional
Probab=99.53 E-value=1.6e-14 Score=116.34 Aligned_cols=69 Identities=13% Similarity=0.186 Sum_probs=61.7
Q ss_pred ChHHHHHHHhcCCccEEEEcCccccccccCCCCEEEE----eC-----CCCCHHHHHHHHhhcccCCCc--eEEEEeccC
Q psy16582 1 MDVQTMLSFNRGITNILVATDVLEEGIDIQSCNLVIK----FD-----PPQHTRSYVQSKAFTVVRHKA--EQILSQYPK 69 (109)
Q Consensus 1 er~~~~~~F~~g~~~iLV~T~~~~~Gldi~~v~~Vi~----~d-----~p~~~~~y~qr~GR~gR~g~~--~~~~~~~~~ 69 (109)
+|+.+.+.|++|.++|||||+.+++|+|+|.+.+||+ || .|.+..+|.|++|||||.|.. |.++.++..
T Consensus 317 eR~~ve~~Fr~G~i~VLvaT~tla~GvnlPa~~VVI~~~~~yd~~~g~~~~s~~~y~Qm~GRAGR~g~d~~G~~ii~~~~ 396 (737)
T PRK02362 317 HRELVEDAFRDRLIKVISSTPTLAAGLNLPARRVIIRDYRRYDGGAGMQPIPVLEYHQMAGRAGRPGLDPYGEAVLLAKS 396 (737)
T ss_pred HHHHHHHHHHcCCCeEEEechhhhhhcCCCceEEEEecceeecCCCCceeCCHHHHHHHhhcCCCCCCCCCceEEEEecC
Confidence 4788999999999999999999999999999999997 77 689999999999999998853 667776654
No 62
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=99.52 E-value=6.5e-15 Score=119.66 Aligned_cols=69 Identities=19% Similarity=0.222 Sum_probs=60.7
Q ss_pred ChHHHHHHHhcCCccEEEEcCccccccccCCCCEEEEeCCCCC------------------HHHHHHHHhhcccCCCceE
Q psy16582 1 MDVQTMLSFNRGITNILVATDVLEEGIDIQSCNLVIKFDPPQH------------------TRSYVQSKAFTVVRHKAEQ 62 (109)
Q Consensus 1 er~~~~~~F~~g~~~iLV~T~~~~~Gldi~~v~~Vi~~d~p~~------------------~~~y~qr~GR~gR~g~~~~ 62 (109)
+|+++++.|++|+.+||||||++++|||+|+|++||+++++.. ..+|.||.||+||. ..|.
T Consensus 253 eq~~~~~~~~~G~rkVlvATnIAErsLtIp~V~~VID~Gl~r~~~yd~~~g~~~L~~~~iSkasa~QR~GRaGR~-~~G~ 331 (812)
T PRK11664 253 EQQKAILPAPAGRRKVVLATNIAETSLTIEGIRLVVDSGLERVARFDPKTGLTRLVTQRISQASMTQRAGRAGRL-EPGI 331 (812)
T ss_pred HHHHHhccccCCCeEEEEecchHHhcccccCceEEEECCCcccccccccCCcceeEEEeechhhhhhhccccCCC-CCcE
Confidence 4778999999999999999999999999999999999887753 35899999999998 5788
Q ss_pred EEEeccCc
Q psy16582 63 ILSQYPKS 70 (109)
Q Consensus 63 ~~~~~~~~ 70 (109)
++.++.++
T Consensus 332 cyrL~t~~ 339 (812)
T PRK11664 332 CLHLYSKE 339 (812)
T ss_pred EEEecCHH
Confidence 88877654
No 63
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=99.52 E-value=6e-14 Score=112.45 Aligned_cols=74 Identities=12% Similarity=0.050 Sum_probs=66.6
Q ss_pred ChHHHHHHHhcCCccEEEEcCccccccccCC-------CCEEEEeCCCCCHHHHHHHHhhcccCCCceEEEEeccCchHH
Q psy16582 1 MDVQTMLSFNRGITNILVATDVLEEGIDIQS-------CNLVIKFDPPQHTRSYVQSKAFTVVRHKAEQILSQYPKSERY 73 (109)
Q Consensus 1 er~~~~~~F~~g~~~iLV~T~~~~~Gldi~~-------v~~Vi~~d~p~~~~~y~qr~GR~gR~g~~~~~~~~~~~~~~~ 73 (109)
+|+..+.+|+.+...|+|||++++||+|++. .-+||++++|.+...|.|++||+||.|.+|...++...++..
T Consensus 441 ~rEa~ii~~ag~~g~VtIATnmAgRGtDI~l~~V~~~GGl~VI~t~~p~s~ri~~q~~GRtGRqG~~G~s~~~ls~eD~l 520 (745)
T TIGR00963 441 EREAEIIAQAGRKGAVTIATNMAGRGTDIKLEEVKELGGLYVIGTERHESRRIDNQLRGRSGRQGDPGSSRFFLSLEDNL 520 (745)
T ss_pred HHHHHHHHhcCCCceEEEEeccccCCcCCCccchhhcCCcEEEecCCCCcHHHHHHHhccccCCCCCcceEEEEeccHHH
Confidence 4778899999999999999999999999998 449999999999999999999999999999888886665555
Q ss_pred H
Q psy16582 74 L 74 (109)
Q Consensus 74 ~ 74 (109)
+
T Consensus 521 ~ 521 (745)
T TIGR00963 521 M 521 (745)
T ss_pred H
Confidence 4
No 64
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.51 E-value=5.8e-14 Score=112.65 Aligned_cols=61 Identities=18% Similarity=0.255 Sum_probs=56.1
Q ss_pred ChHHHHHHHhcC-CccEEEEcCccccccccCCCCEEEEeCCC-CCHHHHHHHHhhcccCCCce
Q psy16582 1 MDVQTMLSFNRG-ITNILVATDVLEEGIDIQSCNLVIKFDPP-QHTRSYVQSKAFTVVRHKAE 61 (109)
Q Consensus 1 er~~~~~~F~~g-~~~iLV~T~~~~~Gldi~~v~~Vi~~d~p-~~~~~y~qr~GR~gR~g~~~ 61 (109)
||++++++|++| .+++||+|+++.+|+|+|++++||+++.| .+...|+||+||++|.+.++
T Consensus 529 ER~~il~~Fr~~~~i~vLv~SkVgdeGIDlP~a~vvI~~s~~~gS~~q~iQRlGRilR~~~~~ 591 (732)
T TIGR00603 529 ERMQILQNFQHNPKVNTIFLSKVGDTSIDLPEANVLIQISSHYGSRRQEAQRLGRILRAKKGS 591 (732)
T ss_pred HHHHHHHHHHhCCCccEEEEecccccccCCCCCCEEEEeCCCCCCHHHHHHHhcccccCCCCC
Confidence 689999999975 88999999999999999999999999998 59999999999999987543
No 65
>KOG0349|consensus
Probab=99.49 E-value=2.6e-14 Score=108.79 Aligned_cols=69 Identities=20% Similarity=0.265 Sum_probs=64.3
Q ss_pred ChHHHHHHHhcCCccEEEEcCccccccccCCCCEEEEeCCCCCHHHHHHHHhhcccCCCceEEEEeccC
Q psy16582 1 MDVQTMLSFNRGITNILVATDVLEEGIDIQSCNLVIKFDPPQHTRSYVQSKAFTVVRHKAEQILSQYPK 69 (109)
Q Consensus 1 er~~~~~~F~~g~~~iLV~T~~~~~Gldi~~v~~Vi~~d~p~~~~~y~qr~GR~gR~g~~~~~~~~~~~ 69 (109)
||++-++.|+.++++.|||||+++||+|+..+.++||.-+|.....|+||+||+||..+-+..+.+...
T Consensus 546 Erk~nle~Fkk~dvkflictdvaargldi~g~p~~invtlpd~k~nyvhrigrvgraermglaislvat 614 (725)
T KOG0349|consen 546 ERKANLESFKKFDVKFLICTDVAARGLDITGLPFMINVTLPDDKTNYVHRIGRVGRAERMGLAISLVAT 614 (725)
T ss_pred HHHHHHHhhhhcCeEEEEEehhhhccccccCCceEEEEecCcccchhhhhhhccchhhhcceeEEEeec
Confidence 678899999999999999999999999999999999999999999999999999999888887777543
No 66
>PHA02558 uvsW UvsW helicase; Provisional
Probab=99.47 E-value=1.3e-13 Score=107.06 Aligned_cols=60 Identities=23% Similarity=0.225 Sum_probs=56.0
Q ss_pred ChHHHHHHHhcCCccEEEEc-CccccccccCCCCEEEEeCCCCCHHHHHHHHhhcccCCCc
Q psy16582 1 MDVQTMLSFNRGITNILVAT-DVLEEGIDIQSCNLVIKFDPPQHTRSYVQSKAFTVVRHKA 60 (109)
Q Consensus 1 er~~~~~~F~~g~~~iLV~T-~~~~~Gldi~~v~~Vi~~d~p~~~~~y~qr~GR~gR~g~~ 60 (109)
+|+++++.|++|+..+|||| +++++|+|+|++++||+++++.+...|+||+||++|.+.+
T Consensus 382 eR~~i~~~~~~~~~~vLvaT~~~l~eG~Dip~ld~vIl~~p~~s~~~~~QriGR~~R~~~~ 442 (501)
T PHA02558 382 DRNEMKKIAEGGKGIIIVASYGVFSTGISIKNLHHVIFAHPSKSKIIVLQSIGRVLRKHGS 442 (501)
T ss_pred HHHHHHHHHhCCCCeEEEEEcceeccccccccccEEEEecCCcchhhhhhhhhccccCCCC
Confidence 47788999999999999998 8999999999999999999999999999999999998754
No 67
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=99.46 E-value=1.6e-13 Score=110.44 Aligned_cols=62 Identities=11% Similarity=0.047 Sum_probs=54.8
Q ss_pred CccEEEEcCccccccccC---------CCCEEEEeCCCCCHHHHHHHHhhcccCCCceEEEEeccCchHHHh
Q psy16582 13 ITNILVATDVLEEGIDIQ---------SCNLVIKFDPPQHTRSYVQSKAFTVVRHKAEQILSQYPKSERYLQ 75 (109)
Q Consensus 13 ~~~iLV~T~~~~~Gldi~---------~v~~Vi~~d~p~~~~~y~qr~GR~gR~g~~~~~~~~~~~~~~~~~ 75 (109)
...|+||||+++||+|++ .+.+|++|++|..... .||+||+||.|.+|...++...++..+.
T Consensus 472 ~g~VlIATdmAgRGtDI~l~~~v~~~GGL~vIit~~~ps~rid-~qr~GRtGRqG~~G~s~~~is~eD~l~~ 542 (762)
T TIGR03714 472 KGAVTVATSMAGRGTDIKLGKGVAELGGLAVIGTERMENSRVD-LQLRGRSGRQGDPGSSQFFVSLEDDLIK 542 (762)
T ss_pred CCeEEEEccccccccCCCCCccccccCCeEEEEecCCCCcHHH-HHhhhcccCCCCceeEEEEEccchhhhh
Confidence 347999999999999999 9999999999998877 9999999999999998888766666553
No 68
>KOG0351|consensus
Probab=99.46 E-value=1.2e-13 Score=113.31 Aligned_cols=70 Identities=17% Similarity=0.187 Sum_probs=65.6
Q ss_pred ChHHHHHHHhcCCccEEEEcCccccccccCCCCEEEEeCCCCCHHHHHHHHhhcccCCCceEEEEeccCc
Q psy16582 1 MDVQTMLSFNRGITNILVATDVLEEGIDIQSCNLVIKFDPPQHTRSYVQSKAFTVVRHKAEQILSQYPKS 70 (109)
Q Consensus 1 er~~~~~~F~~g~~~iLV~T~~~~~Gldi~~v~~Vi~~d~p~~~~~y~qr~GR~gR~g~~~~~~~~~~~~ 70 (109)
+|+.+.++|-.++++|+|||=++++|||.|+|+.||||.+|.+.+.|+|.+|||||.|....++.++...
T Consensus 523 ~R~~Vq~~w~~~~~~VivATVAFGMGIdK~DVR~ViH~~lPks~E~YYQE~GRAGRDG~~s~C~l~y~~~ 592 (941)
T KOG0351|consen 523 ERETVQKAWMSDKIRVIVATVAFGMGIDKPDVRFVIHYSLPKSFEGYYQEAGRAGRDGLPSSCVLLYGYA 592 (941)
T ss_pred HHHHHHHHHhcCCCeEEEEEeeccCCCCCCceeEEEECCCchhHHHHHHhccccCcCCCcceeEEecchh
Confidence 5788999999999999999999999999999999999999999999999999999999988888876543
No 69
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=99.42 E-value=7.2e-13 Score=104.74 Aligned_cols=70 Identities=20% Similarity=0.215 Sum_probs=63.2
Q ss_pred ChHHHHHHHhcCCccEEEEcCccccccccCCCCEEEEeCCC-CCHHHHHHHHhhcccCCCceEEEEeccCc
Q psy16582 1 MDVQTMLSFNRGITNILVATDVLEEGIDIQSCNLVIKFDPP-QHTRSYVQSKAFTVVRHKAEQILSQYPKS 70 (109)
Q Consensus 1 er~~~~~~F~~g~~~iLV~T~~~~~Gldi~~v~~Vi~~d~p-~~~~~y~qr~GR~gR~g~~~~~~~~~~~~ 70 (109)
|++++|++|++|+++|||||++++-|+|+|+..++|..|.- ...+++.|..||+||.+..+.|+.++...
T Consensus 521 eKd~vM~~Fk~~e~~ILVaTTVIEVGVdVPnATvMVIe~AERFGLaQLHQLRGRVGRG~~qSyC~Ll~~~~ 591 (677)
T COG1200 521 EKDAVMEAFKEGEIDILVATTVIEVGVDVPNATVMVIENAERFGLAQLHQLRGRVGRGDLQSYCVLLYKPP 591 (677)
T ss_pred HHHHHHHHHHcCCCcEEEEeeEEEecccCCCCeEEEEechhhhhHHHHHHhccccCCCCcceEEEEEeCCC
Confidence 68899999999999999999999999999999999988866 46889999999999999888888876443
No 70
>KOG0352|consensus
Probab=99.41 E-value=3.7e-13 Score=102.33 Aligned_cols=71 Identities=17% Similarity=0.216 Sum_probs=66.3
Q ss_pred ChHHHHHHHhcCCccEEEEcCccccccccCCCCEEEEeCCCCCHHHHHHHHhhcccCCCceEEEEeccCch
Q psy16582 1 MDVQTMLSFNRGITNILVATDVLEEGIDIQSCNLVIKFDPPQHTRSYVQSKAFTVVRHKAEQILSQYPKSE 71 (109)
Q Consensus 1 er~~~~~~F~~g~~~iLV~T~~~~~Gldi~~v~~Vi~~d~p~~~~~y~qr~GR~gR~g~~~~~~~~~~~~~ 71 (109)
||.++.+++.++++.|++||..+++|+|-|+|+.|||||+|.++..|+|..||+||.|..+.+-..+..++
T Consensus 293 ERTeVQe~WM~~~~PvI~AT~SFGMGVDKp~VRFViHW~~~qn~AgYYQESGRAGRDGk~SyCRLYYsR~D 363 (641)
T KOG0352|consen 293 ERTEVQEKWMNNEIPVIAATVSFGMGVDKPDVRFVIHWSPSQNLAGYYQESGRAGRDGKRSYCRLYYSRQD 363 (641)
T ss_pred hhHHHHHHHhcCCCCEEEEEeccccccCCcceeEEEecCchhhhHHHHHhccccccCCCccceeeeecccc
Confidence 68999999999999999999999999999999999999999999999999999999999988877765543
No 71
>PRK00254 ski2-like helicase; Provisional
Probab=99.40 E-value=3.4e-13 Score=108.53 Aligned_cols=68 Identities=16% Similarity=0.205 Sum_probs=57.7
Q ss_pred ChHHHHHHHhcCCccEEEEcCccccccccCCCCEEEE-------eCCCC-CHHHHHHHHhhcccCC--CceEEEEecc
Q psy16582 1 MDVQTMLSFNRGITNILVATDVLEEGIDIQSCNLVIK-------FDPPQ-HTRSYVQSKAFTVVRH--KAEQILSQYP 68 (109)
Q Consensus 1 er~~~~~~F~~g~~~iLV~T~~~~~Gldi~~v~~Vi~-------~d~p~-~~~~y~qr~GR~gR~g--~~~~~~~~~~ 68 (109)
+|..+.+.|++|.++|||||+.+++|+|+|.+++||. ++.|. ...+|.||+||+||.| ..|.++.++.
T Consensus 309 eR~~ve~~F~~G~i~VLvaT~tLa~Gvnipa~~vVI~~~~~~~~~~~~~~~~~~~~Qm~GRAGR~~~d~~G~~ii~~~ 386 (720)
T PRK00254 309 ERVLIEDAFREGLIKVITATPTLSAGINLPAFRVIIRDTKRYSNFGWEDIPVLEIQQMMGRAGRPKYDEVGEAIIVAT 386 (720)
T ss_pred HHHHHHHHHHCCCCeEEEeCcHHhhhcCCCceEEEECCceEcCCCCceeCCHHHHHHhhhccCCCCcCCCceEEEEec
Confidence 4788999999999999999999999999999999994 55554 5679999999999976 4566666654
No 72
>PRK05580 primosome assembly protein PriA; Validated
Probab=99.39 E-value=6.6e-13 Score=106.40 Aligned_cols=68 Identities=25% Similarity=0.235 Sum_probs=58.0
Q ss_pred hHHHHHHHhcCCccEEEEcCccccccccCCCCEEE--EeCCCCC----------HHHHHHHHhhcccCCCceEEEEeccC
Q psy16582 2 DVQTMLSFNRGITNILVATDVLEEGIDIQSCNLVI--KFDPPQH----------TRSYVQSKAFTVVRHKAEQILSQYPK 69 (109)
Q Consensus 2 r~~~~~~F~~g~~~iLV~T~~~~~Gldi~~v~~Vi--~~d~p~~----------~~~y~qr~GR~gR~g~~~~~~~~~~~ 69 (109)
+++++++|++|+++|||+|+++++|+|+|+|++|+ +.|.+.+ ...|+|++||+||.+..|.++..+..
T Consensus 469 ~~~~l~~f~~g~~~ILVgT~~iakG~d~p~v~lV~il~aD~~l~~pdfra~Er~~~~l~q~~GRagR~~~~g~viiqT~~ 548 (679)
T PRK05580 469 LEQLLAQFARGEADILIGTQMLAKGHDFPNVTLVGVLDADLGLFSPDFRASERTFQLLTQVAGRAGRAEKPGEVLIQTYH 548 (679)
T ss_pred HHHHHHHHhcCCCCEEEEChhhccCCCCCCcCEEEEEcCchhccCCccchHHHHHHHHHHHHhhccCCCCCCEEEEEeCC
Confidence 67899999999999999999999999999999985 4555543 36789999999999888888876543
No 73
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=99.38 E-value=2e-12 Score=104.49 Aligned_cols=71 Identities=13% Similarity=0.099 Sum_probs=58.9
Q ss_pred HHHHHhcCCccEEEEcCccccccccC---CCC-----EEEEeCCCCCHHHHHHHHhhcccCCCceEEEEeccCchHHHh
Q psy16582 5 TMLSFNRGITNILVATDVLEEGIDIQ---SCN-----LVIKFDPPQHTRSYVQSKAFTVVRHKAEQILSQYPKSERYLQ 75 (109)
Q Consensus 5 ~~~~F~~g~~~iLV~T~~~~~Gldi~---~v~-----~Vi~~d~p~~~~~y~qr~GR~gR~g~~~~~~~~~~~~~~~~~ 75 (109)
.+-.+..+...|+|||++++||+||+ +|. +||++++|.+...|.|++||+||.|.+|...++...++..+.
T Consensus 480 ~ii~~ag~~g~VtIATnmAGRGtDI~l~~~V~~~GGLhVI~te~pes~ri~~Ql~GRtGRqG~~G~s~~~~sleD~l~~ 558 (796)
T PRK12906 480 EIIMNAGQRGAVTIATNMAGRGTDIKLGPGVKELGGLAVIGTERHESRRIDNQLRGRSGRQGDPGSSRFYLSLEDDLMR 558 (796)
T ss_pred HHHHhcCCCceEEEEeccccCCCCCCCCcchhhhCCcEEEeeecCCcHHHHHHHhhhhccCCCCcceEEEEeccchHHH
Confidence 33334444555999999999999994 899 999999999999999999999999999988887766655553
No 74
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=99.37 E-value=1.3e-12 Score=106.15 Aligned_cols=54 Identities=22% Similarity=0.130 Sum_probs=47.6
Q ss_pred HHHHHHhc----CC-------ccEEEEcCccccccccCCCCEEEEeCCCCCHHHHHHHHhhcccCCCc
Q psy16582 4 QTMLSFNR----GI-------TNILVATDVLEEGIDIQSCNLVIKFDPPQHTRSYVQSKAFTVVRHKA 60 (109)
Q Consensus 4 ~~~~~F~~----g~-------~~iLV~T~~~~~Gldi~~v~~Vi~~d~p~~~~~y~qr~GR~gR~g~~ 60 (109)
+++++|++ |+ ..|||||+++++|+|++. ++||++..| .++|+||+||+||.|+.
T Consensus 316 ~il~~Fk~~~~~g~~~~~~~g~~ILVATdVaerGLDId~-d~VI~d~aP--~esyIQRiGRtgR~G~~ 380 (844)
T TIGR02621 316 EIFNRFLPQMLSGSRARPQQGTVYLVCTSAGEVGVNISA-DHLVCDLAP--FESMQQRFGRVNRFGEL 380 (844)
T ss_pred HHHHHHhccccccccccccccceEEeccchhhhcccCCc-ceEEECCCC--HHHHHHHhcccCCCCCC
Confidence 77999987 54 789999999999999987 899998877 58999999999999863
No 75
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=99.37 E-value=1.5e-12 Score=106.61 Aligned_cols=75 Identities=9% Similarity=0.075 Sum_probs=65.7
Q ss_pred ChHHHHHHHhcCCccEEEEcCccccccccC---CCCE-----EEEeCCCCCHHHHHHHHhhcccCCCceEEEEeccCchH
Q psy16582 1 MDVQTMLSFNRGITNILVATDVLEEGIDIQ---SCNL-----VIKFDPPQHTRSYVQSKAFTVVRHKAEQILSQYPKSER 72 (109)
Q Consensus 1 er~~~~~~F~~g~~~iLV~T~~~~~Gldi~---~v~~-----Vi~~d~p~~~~~y~qr~GR~gR~g~~~~~~~~~~~~~~ 72 (109)
+|+..+.+|+.+...|+|||++++||+||+ .|.. ||+++.|.+...|.|++||+||.|.+|...+++..++.
T Consensus 634 ~REa~Iia~AG~~g~VtIATNMAGRGtDIkl~~~V~~vGGL~VIgterhes~Rid~Ql~GRtGRqGdpGsS~ffvSleD~ 713 (1025)
T PRK12900 634 DREAEIVAEAGQKGAVTIATNMAGRGTDIKLGEGVRELGGLFILGSERHESRRIDRQLRGRAGRQGDPGESVFYVSLEDE 713 (1025)
T ss_pred HhHHHHHHhcCCCCeEEEeccCcCCCCCcCCccchhhhCCceeeCCCCCchHHHHHHHhhhhhcCCCCcceEEEechhHH
Confidence 478889999999999999999999999999 5543 48999999999999999999999999998888776666
Q ss_pred HHh
Q psy16582 73 YLQ 75 (109)
Q Consensus 73 ~~~ 75 (109)
.+.
T Consensus 714 Lmr 716 (1025)
T PRK12900 714 LMR 716 (1025)
T ss_pred HHH
Confidence 553
No 76
>KOG0329|consensus
Probab=99.37 E-value=2.5e-13 Score=97.71 Aligned_cols=54 Identities=26% Similarity=0.423 Sum_probs=50.9
Q ss_pred EEEcCccccccccCCCCEEEEeCCCCCHHHHHHHHhhcccCCCceEEEEeccCc
Q psy16582 17 LVATDVLEEGIDIQSCNLVIKFDPPQHTRSYVQSKAFTVVRHKAEQILSQYPKS 70 (109)
Q Consensus 17 LV~T~~~~~Gldi~~v~~Vi~~d~p~~~~~y~qr~GR~gR~g~~~~~~~~~~~~ 70 (109)
||||++++||+|+..+++|+|||+|.+..+|.||+||+||.|.+|..+.+...+
T Consensus 302 ~vat~lfgrgmdiervNi~~NYdmp~~~DtYlHrv~rAgrfGtkglaitfvs~e 355 (387)
T KOG0329|consen 302 LVATDLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDE 355 (387)
T ss_pred hHHhhhhccccCcccceeeeccCCCCCchHHHHHhhhhhccccccceeehhcch
Confidence 899999999999999999999999999999999999999999999988886543
No 77
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=99.35 E-value=7.5e-13 Score=111.07 Aligned_cols=66 Identities=20% Similarity=0.167 Sum_probs=54.5
Q ss_pred hHHHHHHHhcCCccEEEEcCccccccccCCCCEEEEeC---------------CC---CCHHHHHHHHhhcccCCCceEE
Q psy16582 2 DVQTMLSFNRGITNILVATDVLEEGIDIQSCNLVIKFD---------------PP---QHTRSYVQSKAFTVVRHKAEQI 63 (109)
Q Consensus 2 r~~~~~~F~~g~~~iLV~T~~~~~Gldi~~v~~Vi~~d---------------~p---~~~~~y~qr~GR~gR~g~~~~~ 63 (109)
|+++++. .|..+||||||++++|||+|+|++||+++ +| -|..+|.||.||+||. ..|.+
T Consensus 328 Q~~Vf~~--~g~rkIIVATNIAEtSITIpgI~yVID~Gl~k~~~Yd~~~~~~~Lp~~~iSkasa~QRaGRAGR~-~~G~c 404 (1294)
T PRK11131 328 QNRVFQS--HSGRRIVLATNVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRV-SEGIC 404 (1294)
T ss_pred HHHHhcc--cCCeeEEEeccHHhhccccCcceEEEECCCccccccccccCcccCCeeecCHhhHhhhccccCCC-CCcEE
Confidence 5556554 57889999999999999999999999986 34 4568999999999999 67778
Q ss_pred EEeccCc
Q psy16582 64 LSQYPKS 70 (109)
Q Consensus 64 ~~~~~~~ 70 (109)
+.+++++
T Consensus 405 ~rLyte~ 411 (1294)
T PRK11131 405 IRLYSED 411 (1294)
T ss_pred EEeCCHH
Confidence 8877653
No 78
>PRK01172 ski2-like helicase; Provisional
Probab=99.34 E-value=1.6e-12 Score=103.96 Aligned_cols=65 Identities=14% Similarity=-0.046 Sum_probs=52.9
Q ss_pred ChHHHHHHHhcCCccEEEEcCccccccccCCCCEEEEeCC---------CCCHHHHHHHHhhcccCCC--ceEEEEe
Q psy16582 1 MDVQTMLSFNRGITNILVATDVLEEGIDIQSCNLVIKFDP---------PQHTRSYVQSKAFTVVRHK--AEQILSQ 66 (109)
Q Consensus 1 er~~~~~~F~~g~~~iLV~T~~~~~Gldi~~v~~Vi~~d~---------p~~~~~y~qr~GR~gR~g~--~~~~~~~ 66 (109)
+|+.+.+.|++|.++|||||+++++|+|+|...+ |.+|. |.+..+|.||+||+||.|. .|.++.+
T Consensus 299 eR~~ve~~f~~g~i~VLvaT~~la~Gvnipa~~V-II~~~~~~~~~~~~~~s~~~~~Qm~GRAGR~g~d~~g~~~i~ 374 (674)
T PRK01172 299 QRRFIEEMFRNRYIKVIVATPTLAAGVNLPARLV-IVRDITRYGNGGIRYLSNMEIKQMIGRAGRPGYDQYGIGYIY 374 (674)
T ss_pred HHHHHHHHHHcCCCeEEEecchhhccCCCcceEE-EEcCceEeCCCCceeCCHHHHHHHhhcCCCCCCCCcceEEEE
Confidence 4788999999999999999999999999998654 44443 4578899999999999883 3444444
No 79
>KOG0337|consensus
Probab=99.34 E-value=1.6e-13 Score=103.77 Aligned_cols=68 Identities=25% Similarity=0.324 Sum_probs=61.9
Q ss_pred HHHHHHhcCCccEEEEcCccccccccCCCCEEEEeCCCCCHHHHHHHHhhcccCCCceEEEEeccCch
Q psy16582 4 QTMLSFNRGITNILVATDVLEEGIDIQSCNLVIKFDPPQHTRSYVQSKAFTVVRHKAEQILSQYPKSE 71 (109)
Q Consensus 4 ~~~~~F~~g~~~iLV~T~~~~~Gldi~~v~~Vi~~d~p~~~~~y~qr~GR~gR~g~~~~~~~~~~~~~ 71 (109)
.-+.+|+.++..+||.||+++||+|+|-.+.|||||+|.+..-|+||+||+.|.|+.+..+.++..++
T Consensus 302 ~~~~~F~~~k~~~lvvTdvaaRG~diplldnvinyd~p~~~klFvhRVgr~aragrtg~aYs~V~~~~ 369 (529)
T KOG0337|consen 302 INGRDFRGRKTSILVVTDVAARGLDIPLLDNVINYDFPPDDKLFVHRVGRVARAGRTGRAYSLVASTD 369 (529)
T ss_pred hccccccCCccceEEEehhhhccCCCccccccccccCCCCCceEEEEecchhhccccceEEEEEeccc
Confidence 34678999999999999999999999999999999999999999999999999999988888754443
No 80
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.33 E-value=3.5e-12 Score=99.38 Aligned_cols=65 Identities=18% Similarity=0.200 Sum_probs=55.6
Q ss_pred HHHHHHHhcCCccEEEEcCccccccccCCCCEEE--EeCCCC----------CHHHHHHHHhhcccCCCceEEEEec
Q psy16582 3 VQTMLSFNRGITNILVATDVLEEGIDIQSCNLVI--KFDPPQ----------HTRSYVQSKAFTVVRHKAEQILSQY 67 (109)
Q Consensus 3 ~~~~~~F~~g~~~iLV~T~~~~~Gldi~~v~~Vi--~~d~p~----------~~~~y~qr~GR~gR~g~~~~~~~~~ 67 (109)
++++++|++|+++|||+|+++++|+|+|+|++|+ +.|... ....|+|++||+||.+++|.++..+
T Consensus 302 ~~~l~~f~~g~~~ILVgT~~i~kG~d~~~v~lV~vl~aD~~l~~pd~ra~E~~~~ll~q~~GRagR~~~~g~viiqt 378 (505)
T TIGR00595 302 EALLNQFANGKADILIGTQMIAKGHHFPNVTLVGVLDADSGLHSPDFRAAERGFQLLTQVAGRAGRAEDPGQVIIQT 378 (505)
T ss_pred HHHHHHHhcCCCCEEEeCcccccCCCCCcccEEEEEcCcccccCcccchHHHHHHHHHHHHhccCCCCCCCEEEEEe
Confidence 6799999999999999999999999999999885 566432 2567899999999998888877654
No 81
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=99.32 E-value=6.2e-12 Score=103.97 Aligned_cols=72 Identities=25% Similarity=0.289 Sum_probs=64.7
Q ss_pred hHHHHHHHhcCCccEEEEcCccccccccCCCCEEEEeCCC-CCHHHHHHHHhhcccCCCceEEEEeccCchHH
Q psy16582 2 DVQTMLSFNRGITNILVATDVLEEGIDIQSCNLVIKFDPP-QHTRSYVQSKAFTVVRHKAEQILSQYPKSERY 73 (109)
Q Consensus 2 r~~~~~~F~~g~~~iLV~T~~~~~Gldi~~v~~Vi~~d~p-~~~~~y~qr~GR~gR~g~~~~~~~~~~~~~~~ 73 (109)
-+++|.+|.+|+++|||||++++-|||+|+++.+|..+.- ...+++.|..||+||++..+.+++++++.+..
T Consensus 844 LE~vM~~F~~g~~dVLv~TTIIEtGIDIPnANTiIIe~AD~fGLsQLyQLRGRVGRS~~~AYAYfl~p~~k~l 916 (1139)
T COG1197 844 LEEVMLDFYNGEYDVLVCTTIIETGIDIPNANTIIIERADKFGLAQLYQLRGRVGRSNKQAYAYFLYPPQKAL 916 (1139)
T ss_pred HHHHHHHHHcCCCCEEEEeeeeecCcCCCCCceEEEeccccccHHHHHHhccccCCccceEEEEEeecCcccc
Confidence 4789999999999999999999999999999998876655 46889999999999999999999998876655
No 82
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=99.29 E-value=5.7e-12 Score=102.10 Aligned_cols=75 Identities=23% Similarity=0.307 Sum_probs=61.0
Q ss_pred hHHHHHHHhcCCccEEEEcCccccccccCCCCEEEEeCCCCCHHHHHHHHhhcccC-CCceEEEEeccCchHHHhh
Q psy16582 2 DVQTMLSFNRGITNILVATDVLEEGIDIQSCNLVIKFDPPQHTRSYVQSKAFTVVR-HKAEQILSQYPKSERYLQY 76 (109)
Q Consensus 2 r~~~~~~F~~g~~~iLV~T~~~~~Gldi~~v~~Vi~~d~p~~~~~y~qr~GR~gR~-g~~~~~~~~~~~~~~~~~~ 76 (109)
|.++-++|++|+.+.+|||+.++.|||+.++++||+|+.|.++..++||+||+|+. +..+..+.+..+.++.++.
T Consensus 293 R~~vE~~lk~G~lravV~TSSLELGIDiG~vdlVIq~~SP~sV~r~lQRiGRsgHr~~~~Skg~ii~~~r~dllE~ 368 (814)
T COG1201 293 RLEVEERLKEGELKAVVATSSLELGIDIGDIDLVIQLGSPKSVNRFLQRIGRAGHRLGEVSKGIIIAEDRDDLLEC 368 (814)
T ss_pred HHHHHHHHhcCCceEEEEccchhhccccCCceEEEEeCCcHHHHHHhHhccccccccCCcccEEEEecCHHHHHHH
Confidence 67888999999999999999999999999999999999999999999999999974 3333333333334444433
No 83
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.28 E-value=2.9e-12 Score=107.73 Aligned_cols=66 Identities=17% Similarity=0.156 Sum_probs=52.8
Q ss_pred hHHHHHHHhcCCccEEEEcCccccccccCCCCEEEEeCCCC------------------CHHHHHHHHhhcccCCCceEE
Q psy16582 2 DVQTMLSFNRGITNILVATDVLEEGIDIQSCNLVIKFDPPQ------------------HTRSYVQSKAFTVVRHKAEQI 63 (109)
Q Consensus 2 r~~~~~~F~~g~~~iLV~T~~~~~Gldi~~v~~Vi~~d~p~------------------~~~~y~qr~GR~gR~g~~~~~ 63 (109)
|+++++.+ +..+|+|||+++++|+|+|+|.+||+++++. |.++|.||.||+||.+ .|.+
T Consensus 321 Q~~vf~~~--~~rkIVLATNIAEtSLTIpgV~yVIDsGl~r~~~yd~~~~~~~L~~~~ISkasa~QRaGRAGR~~-~G~c 397 (1283)
T TIGR01967 321 QQRVFQPH--SGRRIVLATNVAETSLTVPGIHYVIDTGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVA-PGIC 397 (1283)
T ss_pred HHHHhCCC--CCceEEEeccHHHhccccCCeeEEEeCCCccccccccccCccccCCccCCHHHHHHHhhhhCCCC-CceE
Confidence 44454332 2468999999999999999999999998543 5689999999999997 6777
Q ss_pred EEeccCc
Q psy16582 64 LSQYPKS 70 (109)
Q Consensus 64 ~~~~~~~ 70 (109)
+.+++++
T Consensus 398 yRLyte~ 404 (1283)
T TIGR01967 398 IRLYSEE 404 (1283)
T ss_pred EEecCHH
Confidence 7776544
No 84
>PRK14701 reverse gyrase; Provisional
Probab=99.19 E-value=1.6e-11 Score=105.49 Aligned_cols=63 Identities=11% Similarity=0.169 Sum_probs=55.7
Q ss_pred hHHHHHHHhcCCccEEEEc----CccccccccCC-CCEEEEeCCCC---CHHHHHHHH-------------hhcccCCCc
Q psy16582 2 DVQTMLSFNRGITNILVAT----DVLEEGIDIQS-CNLVIKFDPPQ---HTRSYVQSK-------------AFTVVRHKA 60 (109)
Q Consensus 2 r~~~~~~F~~g~~~iLV~T----~~~~~Gldi~~-v~~Vi~~d~p~---~~~~y~qr~-------------GR~gR~g~~ 60 (109)
|.+++++|++|+++||||| ++++||||+|+ |++||+||+|. +...|.|.. ||+||.|..
T Consensus 367 R~~~l~~F~~G~~~VLVaT~s~~gvaaRGIDiP~~Vryvi~~~~Pk~~~~~e~~~~~~~~~~~~~~~~~~~~~a~~~g~~ 446 (1638)
T PRK14701 367 NKKGFDLFEEGEIDYLIGVATYYGTLVRGLDLPERIRFAVFYGVPKFRFRVDLEDPTIYRILGLLSEILKIEEELKEGIP 446 (1638)
T ss_pred HHHHHHHHHcCCCCEEEEecCCCCeeEecCccCCccCEEEEeCCCCCCcchhhcccchhhhhcchHHHHHhhhhcccCCc
Confidence 7889999999999999999 59999999999 99999999999 888777765 999998876
Q ss_pred eEEE
Q psy16582 61 EQIL 64 (109)
Q Consensus 61 ~~~~ 64 (109)
...+
T Consensus 447 ~~~~ 450 (1638)
T PRK14701 447 IEGV 450 (1638)
T ss_pred chhH
Confidence 5544
No 85
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=99.19 E-value=5.9e-11 Score=91.16 Aligned_cols=56 Identities=25% Similarity=0.427 Sum_probs=54.7
Q ss_pred ChHHHHHHHhcCCccEEEEcCccccccccCCCCEEEEeCCCCCHHHHHHHHhhccc
Q psy16582 1 MDVQTMLSFNRGITNILVATDVLEEGIDIQSCNLVIKFDPPQHTRSYVQSKAFTVV 56 (109)
Q Consensus 1 er~~~~~~F~~g~~~iLV~T~~~~~Gldi~~v~~Vi~~d~p~~~~~y~qr~GR~gR 56 (109)
||+++++.|+.|++++||++.++.+|+|+|+++++|....+.|...|+||+||.-|
T Consensus 320 eR~~il~~fr~g~~~~lv~~~vl~EGvDiP~~~~~i~~~~t~S~~~~~Q~lGR~LR 375 (442)
T COG1061 320 EREAILERFRTGGIKVLVTVKVLDEGVDIPDADVLIILRPTGSRRLFIQRLGRGLR 375 (442)
T ss_pred HHHHHHHHHHcCCCCEEEEeeeccceecCCCCcEEEEeCCCCcHHHHHHHhhhhcc
Confidence 68999999999999999999999999999999999999999999999999999999
No 86
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=99.13 E-value=4.7e-11 Score=89.41 Aligned_cols=43 Identities=19% Similarity=0.274 Sum_probs=37.9
Q ss_pred hcCCccEEEEcCccccccccCCCCEEEEeCCCCCHHHHHHHHhhcc
Q psy16582 10 NRGITNILVATDVLEEGIDIQSCNLVIKFDPPQHTRSYVQSKAFTV 55 (109)
Q Consensus 10 ~~g~~~iLV~T~~~~~Gldi~~v~~Vi~~d~p~~~~~y~qr~GR~g 55 (109)
+.++.+|||||+++++|+|++.+ +|| ++ |.+..+|+||+||+|
T Consensus 315 ~~~~~~iLVaTdv~~rGiDi~~~-~vi-~~-p~~~~~yiqR~GR~g 357 (357)
T TIGR03158 315 RAMQFDILLGTSTVDVGVDFKRD-WLI-FS-ARDAAAFWQRLGRLG 357 (357)
T ss_pred HhccCCEEEEecHHhcccCCCCc-eEE-EC-CCCHHHHhhhcccCC
Confidence 45678999999999999999987 566 56 899999999999997
No 87
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=99.12 E-value=3.9e-10 Score=83.93 Aligned_cols=65 Identities=15% Similarity=0.210 Sum_probs=55.0
Q ss_pred hHHHHHHHhcCCccEEEEcCccccccccCCCCEEEE-e-CCCCCHHHHHHHHhhcccCC--CceEEEEe
Q psy16582 2 DVQTMLSFNRGITNILVATDVLEEGIDIQSCNLVIK-F-DPPQHTRSYVQSKAFTVVRH--KAEQILSQ 66 (109)
Q Consensus 2 r~~~~~~F~~g~~~iLV~T~~~~~Gldi~~v~~Vi~-~-d~p~~~~~y~qr~GR~gR~g--~~~~~~~~ 66 (109)
|.+.+++||+|++.+||+|++++||+.+|+|++.+. - ..-.+.++++|-.||+||.- ..|.+.+|
T Consensus 344 R~EkV~~fR~G~~~lLiTTTILERGVTfp~vdV~Vlgaeh~vfTesaLVQIaGRvGRs~~~PtGdv~FF 412 (441)
T COG4098 344 RKEKVEAFRDGKITLLITTTILERGVTFPNVDVFVLGAEHRVFTESALVQIAGRVGRSLERPTGDVLFF 412 (441)
T ss_pred HHHHHHHHHcCceEEEEEeehhhcccccccceEEEecCCcccccHHHHHHHhhhccCCCcCCCCcEEEE
Confidence 678899999999999999999999999999998654 2 23367889999999999965 35667666
No 88
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=99.10 E-value=2.4e-10 Score=88.89 Aligned_cols=76 Identities=21% Similarity=0.277 Sum_probs=62.7
Q ss_pred ChHHHHHHHhcCCccEEEEcCccccccccCCCCEEEEeC-----CCCCHHHHHHHHhhcccCCCceEEEEeccCchHHHh
Q psy16582 1 MDVQTMLSFNRGITNILVATDVLEEGIDIQSCNLVIKFD-----PPQHTRSYVQSKAFTVVRHKAEQILSQYPKSERYLQ 75 (109)
Q Consensus 1 er~~~~~~F~~g~~~iLV~T~~~~~Gldi~~v~~Vi~~d-----~p~~~~~y~qr~GR~gR~g~~~~~~~~~~~~~~~~~ 75 (109)
||.+++.++|.|.++|||+-+++-+|+|+|.|.+|..+| +..|..+++|-+|||.|.-. |.++...+.-...++
T Consensus 484 ER~eIirdLR~G~~DvLVGINLLREGLDiPEVsLVAIlDADKeGFLRse~SLIQtIGRAARN~~-GkvIlYAD~iT~sM~ 562 (663)
T COG0556 484 ERVEIIRDLRLGEFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKVILYADKITDSMQ 562 (663)
T ss_pred HHHHHHHHHhcCCccEEEeehhhhccCCCcceeEEEEeecCccccccccchHHHHHHHHhhccC-CeEEEEchhhhHHHH
Confidence 688999999999999999999999999999999998877 56899999999999999744 455555554333333
Q ss_pred hc
Q psy16582 76 YN 77 (109)
Q Consensus 76 ~~ 77 (109)
..
T Consensus 563 ~A 564 (663)
T COG0556 563 KA 564 (663)
T ss_pred HH
Confidence 33
No 89
>PRK09401 reverse gyrase; Reviewed
Probab=99.08 E-value=1e-10 Score=98.37 Aligned_cols=52 Identities=21% Similarity=0.285 Sum_probs=48.4
Q ss_pred HHHHHHhcCCccEEEE----cCccccccccCC-CCEEEEeCCCC------CHHHHHHHHhhcc
Q psy16582 4 QTMLSFNRGITNILVA----TDVLEEGIDIQS-CNLVIKFDPPQ------HTRSYVQSKAFTV 55 (109)
Q Consensus 4 ~~~~~F~~g~~~iLV~----T~~~~~Gldi~~-v~~Vi~~d~p~------~~~~y~qr~GR~g 55 (109)
+.+++|++|+++|||| ||+++||||+|+ |++|||||+|. ....|.||+||+-
T Consensus 367 ~~l~~F~~G~~~VLVatas~tdv~aRGIDiP~~IryVI~y~vP~~~~~~~~~~~~~~~~~r~~ 429 (1176)
T PRK09401 367 RKFEKFEEGEVDVLVGVASYYGVLVRGIDLPERIRYAIFYGVPKFKFSLEEELAPPFLLLRLL 429 (1176)
T ss_pred HHHHHHHCCCCCEEEEecCCCCceeecCCCCcceeEEEEeCCCCEEEeccccccCHHHHHHHH
Confidence 4679999999999999 699999999999 89999999998 6788999999996
No 90
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=99.00 E-value=1.2e-09 Score=91.74 Aligned_cols=56 Identities=23% Similarity=0.215 Sum_probs=53.1
Q ss_pred hHHHHHHHhcCCc-cEEEEcCccccccccCCCCEEEEeCCCCCHHHHHHHHhhcccC
Q psy16582 2 DVQTMLSFNRGIT-NILVATDVLEEGIDIQSCNLVIKFDPPQHTRSYVQSKAFTVVR 57 (109)
Q Consensus 2 r~~~~~~F~~g~~-~iLV~T~~~~~Gldi~~v~~Vi~~d~p~~~~~y~qr~GR~gR~ 57 (109)
+++++++|+++.. +|||+++++..|+|+|.|.+||.++++.|...|+|++||+.|.
T Consensus 744 ~~~li~~Fk~~~~p~IlVsvdmL~TG~DvP~v~~vVf~rpvkS~~lf~QmIGRgtR~ 800 (1123)
T PRK11448 744 PDQLIRRFKNERLPNIVVTVDLLTTGIDVPSICNLVFLRRVRSRILYEQMLGRATRL 800 (1123)
T ss_pred hHHHHHHHhCCCCCeEEEEecccccCCCcccccEEEEecCCCCHHHHHHHHhhhccC
Confidence 5679999999987 6999999999999999999999999999999999999999995
No 91
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=98.94 E-value=4.8e-09 Score=87.35 Aligned_cols=63 Identities=16% Similarity=0.210 Sum_probs=55.6
Q ss_pred ChHHHHHHHhcC---CccEEEEcCccccccccCCCCEEEEeCCCCCHHHHHHHHhhcccCCCceEE
Q psy16582 1 MDVQTMLSFNRG---ITNILVATDVLEEGIDIQSCNLVIKFDPPQHTRSYVQSKAFTVVRHKAEQI 63 (109)
Q Consensus 1 er~~~~~~F~~g---~~~iLV~T~~~~~Gldi~~v~~Vi~~d~p~~~~~y~qr~GR~gR~g~~~~~ 63 (109)
+|++++++|... ..-+|++|.+++.|||+..+++||+||+||++..+.|++||+.|.|....+
T Consensus 525 eRq~~Id~Fn~~~s~~~VfLLSTrAGGlGINLt~Ad~VIiyD~dWNP~~d~QAidRaHRIGQkk~V 590 (1033)
T PLN03142 525 DRDASIDAFNKPGSEKFVFLLSTRAGGLGINLATADIVILYDSDWNPQVDLQAQDRAHRIGQKKEV 590 (1033)
T ss_pred HHHHHHHHhccccCCceEEEEeccccccCCchhhCCEEEEeCCCCChHHHHHHHHHhhhcCCCceE
Confidence 478999999753 345789999999999999999999999999999999999999999965443
No 92
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=98.92 E-value=8.4e-10 Score=90.52 Aligned_cols=67 Identities=27% Similarity=0.276 Sum_probs=60.3
Q ss_pred ChHHHHHHHhcCCccEEEEcCccccccccCCCCEEEEeCCCC-CHHHHHHHHhhcccCCCceEEEEec
Q psy16582 1 MDVQTMLSFNRGITNILVATDVLEEGIDIQSCNLVIKFDPPQ-HTRSYVQSKAFTVVRHKAEQILSQY 67 (109)
Q Consensus 1 er~~~~~~F~~g~~~iLV~T~~~~~Gldi~~v~~Vi~~d~p~-~~~~y~qr~GR~gR~g~~~~~~~~~ 67 (109)
+|.++..+|++|+..++++|+.++-|+|+.+++.||.+..|. +..+++||.||+||.+.....+...
T Consensus 352 er~~ie~~~~~g~~~~~~st~AlelgidiG~ldavi~~g~P~~s~~~~~Q~~GRaGR~~~~~l~~~v~ 419 (851)
T COG1205 352 ERRRIEAEFKEGELLGVIATNALELGIDIGSLDAVIAYGYPGVSVLSFRQRAGRAGRRGQESLVLVVL 419 (851)
T ss_pred HHHHHHHHHhcCCccEEecchhhhhceeehhhhhHhhcCCCCchHHHHHHhhhhccCCCCCceEEEEe
Confidence 467889999999999999999999999999999999999999 8999999999999998555544443
No 93
>PRK09694 helicase Cas3; Provisional
Probab=98.91 E-value=2.3e-09 Score=88.09 Aligned_cols=54 Identities=26% Similarity=0.342 Sum_probs=46.9
Q ss_pred HHHHHHH-hcCC---ccEEEEcCccccccccCCCCEEEEeCCCCCHHHHHHHHhhcccCCC
Q psy16582 3 VQTMLSF-NRGI---TNILVATDVLEEGIDIQSCNLVIKFDPPQHTRSYVQSKAFTVVRHK 59 (109)
Q Consensus 3 ~~~~~~F-~~g~---~~iLV~T~~~~~Gldi~~v~~Vi~~d~p~~~~~y~qr~GR~gR~g~ 59 (109)
+++++.| ++|+ ..|||||+++++|+|+ +++++|....| ..+|+||+||++|.+.
T Consensus 607 ~~vl~~fgk~g~r~~~~ILVaTQViE~GLDI-d~DvlItdlaP--idsLiQRaGR~~R~~~ 664 (878)
T PRK09694 607 QRVIENFGKNGKRNQGRILVATQVVEQSLDL-DFDWLITQLCP--VDLLFQRLGRLHRHHR 664 (878)
T ss_pred HHHHHHHHhcCCcCCCeEEEECcchhheeec-CCCeEEECCCC--HHHHHHHHhccCCCCC
Confidence 4578889 6776 4799999999999999 58999998888 6799999999999774
No 94
>KOG0353|consensus
Probab=98.88 E-value=1.7e-09 Score=81.90 Aligned_cols=64 Identities=20% Similarity=0.242 Sum_probs=57.2
Q ss_pred HHHHhcCCccEEEEcCccccccccCCCCEEEEeCCCCCHHHHHH------------------------------------
Q psy16582 6 MLSFNRGITNILVATDVLEEGIDIQSCNLVIKFDPPQHTRSYVQ------------------------------------ 49 (109)
Q Consensus 6 ~~~F~~g~~~iLV~T~~~~~Gldi~~v~~Vi~~d~p~~~~~y~q------------------------------------ 49 (109)
-+.+-+|+++|+|+|-.+++|||-|+|++||+..+|.+.+.|+|
T Consensus 360 hq~w~a~eiqvivatvafgmgidkpdvrfvihhsl~ksienyyqasarillrmtkqknksdtggstqinilevctnfkif 439 (695)
T KOG0353|consen 360 HQGWIAGEIQVIVATVAFGMGIDKPDVRFVIHHSLPKSIENYYQASARILLRMTKQKNKSDTGGSTQINILEVCTNFKIF 439 (695)
T ss_pred cccccccceEEEEEEeeecccCCCCCeeEEEecccchhHHHHHHHHHHHHHHHhhhcccccCCCcceeehhhhhccceee
Confidence 34567899999999999999999999999999999999999999
Q ss_pred -------HHhhcccCCCceEEEEeccC
Q psy16582 50 -------SKAFTVVRHKAEQILSQYPK 69 (109)
Q Consensus 50 -------r~GR~gR~g~~~~~~~~~~~ 69 (109)
..||+||.+.+..++.++.-
T Consensus 440 favfsekesgragrd~~~a~cilyy~~ 466 (695)
T KOG0353|consen 440 FAVFSEKESGRAGRDDMKADCILYYGF 466 (695)
T ss_pred eeeecchhccccccCCCcccEEEEech
Confidence 78999999988777776543
No 95
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=98.77 E-value=8.5e-09 Score=87.01 Aligned_cols=41 Identities=17% Similarity=0.387 Sum_probs=38.3
Q ss_pred HHHHHHHhcCCccEEEE----cCccccccccCC-CCEEEEeCCCCC
Q psy16582 3 VQTMLSFNRGITNILVA----TDVLEEGIDIQS-CNLVIKFDPPQH 43 (109)
Q Consensus 3 ~~~~~~F~~g~~~iLV~----T~~~~~Gldi~~-v~~Vi~~d~p~~ 43 (109)
++++++|++|+++|||| ||+++||||+|+ |++|||||+|..
T Consensus 365 ~~~l~~Fr~G~~~vLVata~~tdv~aRGIDip~~V~~vI~~~~P~~ 410 (1171)
T TIGR01054 365 KEDYEKFAEGEIDVLIGVASYYGTLVRGLDLPERVRYAVFLGVPKF 410 (1171)
T ss_pred HHHHHHHHcCCCCEEEEeccccCcccccCCCCccccEEEEECCCCE
Confidence 57899999999999999 599999999999 899999999964
No 96
>KOG4150|consensus
Probab=98.77 E-value=1.6e-08 Score=79.89 Aligned_cols=64 Identities=22% Similarity=0.190 Sum_probs=57.2
Q ss_pred hHHHHHHHhcCCccEEEEcCccccccccCCCCEEEEeCCCCCHHHHHHHHhhcccCCCceEEEE
Q psy16582 2 DVQTMLSFNRGITNILVATDVLEEGIDIQSCNLVIKFDPPQHTRSYVQSKAFTVVRHKAEQILS 65 (109)
Q Consensus 2 r~~~~~~F~~g~~~iLV~T~~~~~Gldi~~v~~Vi~~d~p~~~~~y~qr~GR~gR~g~~~~~~~ 65 (109)
|.++-.++-.|+..-+|+|++++.|||+.+.+.|++.++|.|...+.|..||+||.++.+..+.
T Consensus 572 RRKIE~~~F~G~L~giIaTNALELGIDIG~LDAVl~~GFP~S~aNl~QQ~GRAGRRNk~SLavy 635 (1034)
T KOG4150|consen 572 RRKIESDLFGGKLCGIIATNALELGIDIGHLDAVLHLGFPGSIANLWQQAGRAGRRNKPSLAVY 635 (1034)
T ss_pred HHHHHHHhhCCeeeEEEecchhhhccccccceeEEEccCchhHHHHHHHhccccccCCCceEEE
Confidence 5566677778999999999999999999999999999999999999999999999887665443
No 97
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=98.64 E-value=5.4e-08 Score=78.68 Aligned_cols=69 Identities=19% Similarity=0.232 Sum_probs=55.1
Q ss_pred HHHHHHHhcCCccEEEEcCccccccccCCCCEEEEeCCC--C----------CHHHHHHHHhhcccCCCceEEEEeccCc
Q psy16582 3 VQTMLSFNRGITNILVATDVLEEGIDIQSCNLVIKFDPP--Q----------HTRSYVQSKAFTVVRHKAEQILSQYPKS 70 (109)
Q Consensus 3 ~~~~~~F~~g~~~iLV~T~~~~~Gldi~~v~~Vi~~d~p--~----------~~~~y~qr~GR~gR~g~~~~~~~~~~~~ 70 (109)
+..+++|.+|+.+|||.|.++..|.|+|++.+|...|.- . ....+.|-.||+||.+++|.++..+...
T Consensus 524 ~~~l~~~~~ge~dILiGTQmiaKG~~fp~vtLVgvl~aD~~L~~~DfRA~Er~fqll~QvaGRAgR~~~~G~VvIQT~~P 603 (730)
T COG1198 524 EDLLDQFANGEADILIGTQMIAKGHDFPNVTLVGVLDADTGLGSPDFRASERTFQLLMQVAGRAGRAGKPGEVVIQTYNP 603 (730)
T ss_pred HHHHHHHhCCCCCeeecchhhhcCCCcccceEEEEEechhhhcCCCcchHHHHHHHHHHHHhhhccCCCCCeEEEEeCCC
Confidence 467999999999999999999999999999997544322 1 2555689999999998877777765443
Q ss_pred h
Q psy16582 71 E 71 (109)
Q Consensus 71 ~ 71 (109)
+
T Consensus 604 ~ 604 (730)
T COG1198 604 D 604 (730)
T ss_pred C
Confidence 3
No 98
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=98.63 E-value=2e-07 Score=76.21 Aligned_cols=74 Identities=12% Similarity=0.056 Sum_probs=62.7
Q ss_pred ChHHHHHHHhcCCccEEEEcCccccccccCCC-------------------------------------C-EEEEeCCCC
Q psy16582 1 MDVQTMLSFNRGITNILVATDVLEEGIDIQSC-------------------------------------N-LVIKFDPPQ 42 (109)
Q Consensus 1 er~~~~~~F~~g~~~iLV~T~~~~~Gldi~~v-------------------------------------~-~Vi~~d~p~ 42 (109)
+|+..+.+|+.+...|+|||++++||+||+-= . +||--..|.
T Consensus 466 eREa~Iia~Ag~~g~VtIATNmAGRGtDI~LgGn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~GGLhVigTerhe 545 (830)
T PRK12904 466 EREAEIIAQAGRPGAVTIATNMAGRGTDIKLGGNPEMLAAALLEEETEEQIAKIKAEWQEEHEEVLEAGGLHVIGTERHE 545 (830)
T ss_pred HHHHHHHHhcCCCceEEEecccccCCcCccCCCchhhhhhhhhhhhhhHHHHHHHHHHhhhhhhHHHcCCCEEEecccCc
Confidence 47888999999999999999999999999853 1 688888999
Q ss_pred CHHHHHHHHhhcccCCCceEEEEeccCchHHH
Q psy16582 43 HTRSYVQSKAFTVVRHKAEQILSQYPKSERYL 74 (109)
Q Consensus 43 ~~~~y~qr~GR~gR~g~~~~~~~~~~~~~~~~ 74 (109)
|..-=-|..||+||.|.+|..-++..-++..+
T Consensus 546 srRid~QlrGRagRQGdpGss~f~lSleD~l~ 577 (830)
T PRK12904 546 SRRIDNQLRGRSGRQGDPGSSRFYLSLEDDLM 577 (830)
T ss_pred hHHHHHHhhcccccCCCCCceeEEEEcCcHHH
Confidence 99889999999999998888777665554444
No 99
>COG1204 Superfamily II helicase [General function prediction only]
Probab=98.58 E-value=9.9e-08 Score=77.76 Aligned_cols=57 Identities=18% Similarity=0.258 Sum_probs=50.7
Q ss_pred hHHHHHHHhcCCccEEEEcCccccccccCCCCEEE----EeC-----CCCCHHHHHHHHhhcccCC
Q psy16582 2 DVQTMLSFNRGITNILVATDVLEEGIDIQSCNLVI----KFD-----PPQHTRSYVQSKAFTVVRH 58 (109)
Q Consensus 2 r~~~~~~F~~g~~~iLV~T~~~~~Gldi~~v~~Vi----~~d-----~p~~~~~y~qr~GR~gR~g 58 (109)
|+-+-+.|+.|.++|||||+.++.|++.|.-.+|| -|| .+-+..+|.|..|||||.|
T Consensus 329 R~~vE~~Fr~g~ikVlv~TpTLA~GVNLPA~~VIIk~~~~y~~~~g~~~i~~~dv~QM~GRAGRPg 394 (766)
T COG1204 329 RQLVEDAFRKGKIKVLVSTPTLAAGVNLPARTVIIKDTRRYDPKGGIVDIPVLDVLQMAGRAGRPG 394 (766)
T ss_pred HHHHHHHHhcCCceEEEechHHhhhcCCcceEEEEeeeEEEcCCCCeEECchhhHhhccCcCCCCC
Confidence 55677889999999999999999999999877776 377 6678999999999999988
No 100
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=98.29 E-value=2.4e-06 Score=70.39 Aligned_cols=72 Identities=13% Similarity=0.036 Sum_probs=57.5
Q ss_pred ChHHHHHHHhcCCccEEEEcCccccccccCCC--------------------------------C-----EEEEeCCCCC
Q psy16582 1 MDVQTMLSFNRGITNILVATDVLEEGIDIQSC--------------------------------N-----LVIKFDPPQH 43 (109)
Q Consensus 1 er~~~~~~F~~g~~~iLV~T~~~~~Gldi~~v--------------------------------~-----~Vi~~d~p~~ 43 (109)
|++.+.++|+.|. |+|||++++||+||.== . +||--..+.|
T Consensus 487 Ea~ii~~Ag~~G~--VtIATnmAGRGTDIkLggn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGL~VIgTerheS 564 (908)
T PRK13107 487 EAEIVAQAGRTGA--VTIATNMAGRGTDIVLGGNWNMEIEALENPTAEQKAKIKADWQIRHDEVVAAGGLHILGTERHES 564 (908)
T ss_pred HHHHHHhCCCCCc--EEEecCCcCCCcceecCCchHHhhhhhcchhhHHHHHHHHHHHhhHHHHHHcCCCEEEecccCch
Confidence 4567788899988 99999999999998721 1 6788888888
Q ss_pred HHHHHHHHhhcccCCCceEEEEeccCchHHH
Q psy16582 44 TRSYVQSKAFTVVRHKAEQILSQYPKSERYL 74 (109)
Q Consensus 44 ~~~y~qr~GR~gR~g~~~~~~~~~~~~~~~~ 74 (109)
..-=-|..||+||.|.+|..-++..-++..+
T Consensus 565 rRID~QLrGRaGRQGDPGss~f~lSlED~L~ 595 (908)
T PRK13107 565 RRIDNQLRGRAGRQGDAGSSRFYLSMEDSLM 595 (908)
T ss_pred HHHHhhhhcccccCCCCCceeEEEEeCcHHH
Confidence 8888999999999998888777655544443
No 101
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=98.28 E-value=3e-06 Score=69.83 Aligned_cols=72 Identities=13% Similarity=0.029 Sum_probs=57.4
Q ss_pred ChHHHHHHHhcCCccEEEEcCccccccccCCC------------------------------------C--EEEEeCCCC
Q psy16582 1 MDVQTMLSFNRGITNILVATDVLEEGIDIQSC------------------------------------N--LVIKFDPPQ 42 (109)
Q Consensus 1 er~~~~~~F~~g~~~iLV~T~~~~~Gldi~~v------------------------------------~--~Vi~~d~p~ 42 (109)
|++.+.++|+.|. |+|||++++||+||.== . +||--..+.
T Consensus 482 Ea~iia~Ag~~G~--VtIATNmAGRGtDI~Lggn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGL~VIgTerhe 559 (896)
T PRK13104 482 EAQIIAEAGRPGA--VTIATNMAGRGTDIVLGGSLAADLANLPADASEQEKEAVKKEWQKRHDEVIAAGGLRIIGSERHE 559 (896)
T ss_pred HHHHHHhCCCCCc--EEEeccCccCCcceecCCchhhhhhccccchhhHHHHHHHHHhhhhhhHHHHcCCCEEEeeccCc
Confidence 4677889999995 99999999999998721 1 577777888
Q ss_pred CHHHHHHHHhhcccCCCceEEEEeccCchHHH
Q psy16582 43 HTRSYVQSKAFTVVRHKAEQILSQYPKSERYL 74 (109)
Q Consensus 43 ~~~~y~qr~GR~gR~g~~~~~~~~~~~~~~~~ 74 (109)
|..-=-|..||+||.|.+|..-++.+-++..+
T Consensus 560 srRID~QLrGRaGRQGDPGss~f~lSleD~l~ 591 (896)
T PRK13104 560 SRRIDNQLRGRAGRQGDPGSSRFYLSLEDNLM 591 (896)
T ss_pred hHHHHHHhccccccCCCCCceEEEEEcCcHHH
Confidence 88777999999999998888777655554444
No 102
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=98.25 E-value=1.6e-06 Score=68.68 Aligned_cols=78 Identities=12% Similarity=0.130 Sum_probs=62.9
Q ss_pred ChHHHHHHHhcCCccEEEEcCccccccccCCCCEEEE---eCCC-CCHHHHHHHHhhcccCC--CceEEEEeccCchHHH
Q psy16582 1 MDVQTMLSFNRGITNILVATDVLEEGIDIQSCNLVIK---FDPP-QHTRSYVQSKAFTVVRH--KAEQILSQYPKSERYL 74 (109)
Q Consensus 1 er~~~~~~F~~g~~~iLV~T~~~~~Gldi~~v~~Vi~---~d~p-~~~~~y~qr~GR~gR~g--~~~~~~~~~~~~~~~~ 74 (109)
||+.+-.+|.++++.++|+|-+++.|+|+|.-++|.. ++.- .++..|.|..||+||.+ ..|.++.+......|.
T Consensus 478 eRk~vE~~F~~q~l~~VVTTAAL~AGVDFPASQVIFEsLaMG~~WLs~~EF~QM~GRAGRp~yHdrGkVyllvepg~~Y~ 557 (830)
T COG1202 478 ERKSVERAFAAQELAAVVTTAALAAGVDFPASQVIFESLAMGIEWLSVREFQQMLGRAGRPDYHDRGKVYLLVEPGKKYH 557 (830)
T ss_pred HHHHHHHHHhcCCcceEeehhhhhcCCCCchHHHHHHHHHcccccCCHHHHHHHhcccCCCCcccCceEEEEecCChhhc
Confidence 5788889999999999999999999999998776532 3333 37899999999999987 5778888877777776
Q ss_pred hhcc
Q psy16582 75 QYNS 78 (109)
Q Consensus 75 ~~~~ 78 (109)
....
T Consensus 558 ~~m~ 561 (830)
T COG1202 558 ASME 561 (830)
T ss_pred cccc
Confidence 5443
No 103
>KOG0926|consensus
Probab=98.15 E-value=9.9e-07 Score=71.87 Aligned_cols=65 Identities=18% Similarity=0.242 Sum_probs=50.7
Q ss_pred hHHHHHHHhcCCccEEEEcCccccccccCCCCEEEE--------eCCCCCHHHH----------HHHHhhcccCCCceEE
Q psy16582 2 DVQTMLSFNRGITNILVATDVLEEGIDIQSCNLVIK--------FDPPQHTRSY----------VQSKAFTVVRHKAEQI 63 (109)
Q Consensus 2 r~~~~~~F~~g~~~iLV~T~~~~~Gldi~~v~~Vi~--------~d~p~~~~~y----------~qr~GR~gR~g~~~~~ 63 (109)
|.++++.--.|.--++|+|++++-.+.||+|.+||. ||--.++.+| -||+|||||-|.+ ++
T Consensus 619 Q~RVF~~~p~g~RLcVVaTNVAETSLTIPgIkYVVD~Gr~K~R~Yd~~TGV~~FeV~wiSkASadQRAGRAGRtgpG-Hc 697 (1172)
T KOG0926|consen 619 QMRVFDEVPKGERLCVVATNVAETSLTIPGIKYVVDCGRVKERLYDSKTGVSSFEVDWISKASADQRAGRAGRTGPG-HC 697 (1172)
T ss_pred hhhhccCCCCCceEEEEeccchhcccccCCeeEEEeccchhhhccccccCceeEEEEeeeccccchhccccCCCCCC-ce
Confidence 455666666788889999999999999999999997 5555554444 7999999998655 55
Q ss_pred EEec
Q psy16582 64 LSQY 67 (109)
Q Consensus 64 ~~~~ 67 (109)
+.++
T Consensus 698 YRLY 701 (1172)
T KOG0926|consen 698 YRLY 701 (1172)
T ss_pred eehh
Confidence 5554
No 104
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=98.12 E-value=1.9e-06 Score=70.90 Aligned_cols=67 Identities=21% Similarity=0.282 Sum_probs=50.8
Q ss_pred hHHHHHHHhcCCccEEEEcCccccccccCCCCEEEE--------eCC----------CCCHHHHHHHHhhcccCCCceEE
Q psy16582 2 DVQTMLSFNRGITNILVATDVLEEGIDIQSCNLVIK--------FDP----------PQHTRSYVQSKAFTVVRHKAEQI 63 (109)
Q Consensus 2 r~~~~~~F~~g~~~iLV~T~~~~~Gldi~~v~~Vi~--------~d~----------p~~~~~y~qr~GR~gR~g~~~~~ 63 (109)
|.++++.-..|+-+|++||++++-+|.||+|.+||. ||. |-|-.+..||.||+||.+ .|.+
T Consensus 302 Q~rvF~p~~~~~RKVVlATNIAETSLTI~gIr~VIDsG~ak~~~y~~~~g~~~L~~~~ISqAsA~QRaGRAGR~~-pGic 380 (845)
T COG1643 302 QVRVFEPAPGGKRKVVLATNIAETSLTIPGIRYVIDSGLAKEKRYDPRTGLTRLETEPISKASADQRAGRAGRTG-PGIC 380 (845)
T ss_pred HHhhcCCCCCCcceEEEEccccccceeeCCeEEEecCCcccccccccccCceeeeEEEechhhhhhhccccccCC-CceE
Confidence 455555444565669999999999999999999997 332 245778899999999974 5567
Q ss_pred EEeccC
Q psy16582 64 LSQYPK 69 (109)
Q Consensus 64 ~~~~~~ 69 (109)
+.++.+
T Consensus 381 yRLyse 386 (845)
T COG1643 381 YRLYSE 386 (845)
T ss_pred EEecCH
Confidence 776654
No 105
>KOG0949|consensus
Probab=98.10 E-value=4.9e-06 Score=69.01 Aligned_cols=63 Identities=21% Similarity=0.203 Sum_probs=52.3
Q ss_pred HHHhcCCccEEEEcCccccccccCCCCEEEEeC-CCCCHHHHHHHHhhcccCC--CceEEEEeccC
Q psy16582 7 LSFNRGITNILVATDVLEEGIDIQSCNLVIKFD-PPQHTRSYVQSKAFTVVRH--KAEQILSQYPK 69 (109)
Q Consensus 7 ~~F~~g~~~iLV~T~~~~~Gldi~~v~~Vi~~d-~p~~~~~y~qr~GR~gR~g--~~~~~~~~~~~ 69 (109)
=-||+|...||+||..++-||++|--.+|.--| +-.++..|.|..|||||.| .-|.++++-.+
T Consensus 982 vLFR~g~L~VlfaT~TLsLGiNMPCrTVvF~gDsLQL~plny~QmaGRAGRRGFD~lGnV~FmgiP 1047 (1330)
T KOG0949|consen 982 VLFRQGHLQVLFATETLSLGINMPCRTVVFAGDSLQLDPLNYKQMAGRAGRRGFDTLGNVVFMGIP 1047 (1330)
T ss_pred HHhhcCceEEEEEeeehhcccCCCceeEEEeccccccCchhHHhhhccccccccccccceEEEeCc
Confidence 358999999999999999999999877776655 4467899999999999998 45777776444
No 106
>KOG0950|consensus
Probab=98.10 E-value=8.6e-06 Score=67.16 Aligned_cols=59 Identities=19% Similarity=0.142 Sum_probs=50.8
Q ss_pred ChHHHHHHHhcCCccEEEEcCccccccccCCCCEEEEeCC----CCCHHHHHHHHhhcccCCC
Q psy16582 1 MDVQTMLSFNRGITNILVATDVLEEGIDIQSCNLVIKFDP----PQHTRSYVQSKAFTVVRHK 59 (109)
Q Consensus 1 er~~~~~~F~~g~~~iLV~T~~~~~Gldi~~v~~Vi~~d~----p~~~~~y~qr~GR~gR~g~ 59 (109)
||+.+-..||.|.+.|++||+.++-|++.|..+++|-.-+ +.+...|.|++|||||.|.
T Consensus 536 ER~~iE~afr~g~i~vl~aTSTlaaGVNLPArRVIiraP~~g~~~l~~~~YkQM~GRAGR~gi 598 (1008)
T KOG0950|consen 536 EREIIEAAFREGNIFVLVATSTLAAGVNLPARRVIIRAPYVGREFLTRLEYKQMVGRAGRTGI 598 (1008)
T ss_pred hHHHHHHHHHhcCeEEEEecchhhccCcCCcceeEEeCCccccchhhhhhHHhhhhhhhhccc
Confidence 4666667999999999999999999999999999987532 3567889999999999883
No 107
>KOG0953|consensus
Probab=98.03 E-value=1.4e-05 Score=63.09 Aligned_cols=67 Identities=13% Similarity=0.142 Sum_probs=51.4
Q ss_pred HHHHhc--CCccEEEEcCccccccccCCCCEEEEeCCC---------CCHHHHHHHHhhcccCCC---ceEEEEeccCch
Q psy16582 6 MLSFNR--GITNILVATDVLEEGIDIQSCNLVIKFDPP---------QHTRSYVQSKAFTVVRHK---AEQILSQYPKSE 71 (109)
Q Consensus 6 ~~~F~~--g~~~iLV~T~~~~~Gldi~~v~~Vi~~d~p---------~~~~~y~qr~GR~gR~g~---~~~~~~~~~~~~ 71 (109)
-..|.+ ++++||||||++++|+++ +++-||-|++- -...+-.|-.|||||.|. .|.++.+..++-
T Consensus 400 A~~FNd~~~e~dvlVAsDAIGMGLNL-~IrRiiF~sl~Kysg~e~~~it~sqikQIAGRAGRf~s~~~~G~vTtl~~eDL 478 (700)
T KOG0953|consen 400 AALFNDPSNECDVLVASDAIGMGLNL-NIRRIIFYSLIKYSGRETEDITVSQIKQIAGRAGRFGSKYPQGEVTTLHSEDL 478 (700)
T ss_pred HHHhCCCCCccceEEeeccccccccc-ceeEEEEeecccCCcccceeccHHHHHHHhhcccccccCCcCceEEEeeHhhH
Confidence 355765 899999999999999996 67788877654 467888999999999874 466776654433
Q ss_pred HH
Q psy16582 72 RY 73 (109)
Q Consensus 72 ~~ 73 (109)
..
T Consensus 479 ~~ 480 (700)
T KOG0953|consen 479 KL 480 (700)
T ss_pred HH
Confidence 33
No 108
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=98.03 E-value=9.1e-06 Score=66.21 Aligned_cols=54 Identities=24% Similarity=0.268 Sum_probs=43.2
Q ss_pred hcCCccEEEEcCccccccccCCCCEEEEeCCCCCHHHHHHHHhhcccCC--CceEEEEe
Q psy16582 10 NRGITNILVATDVLEEGIDIQSCNLVIKFDPPQHTRSYVQSKAFTVVRH--KAEQILSQ 66 (109)
Q Consensus 10 ~~g~~~iLV~T~~~~~Gldi~~v~~Vi~~d~p~~~~~y~qr~GR~gR~g--~~~~~~~~ 66 (109)
+.+...|+|||++++-|+|+. .+++|-= +....+++||+||+.|.| .++.++..
T Consensus 491 ~~~~~~IvVaTQVIEagvDid-fd~mITe--~aPidSLIQR~GRv~R~g~~~~~~~~v~ 546 (733)
T COG1203 491 KQNEGFIVVATQVIEAGVDID-FDVLITE--LAPIDSLIQRAGRVNRHGKKENGKIYVY 546 (733)
T ss_pred hccCCeEEEEeeEEEEEeccc-cCeeeec--CCCHHHHHHHHHHHhhcccccCCceeEe
Confidence 677889999999999999986 6666543 445778999999999998 45555554
No 109
>KOG0920|consensus
Probab=97.97 E-value=2.3e-06 Score=70.66 Aligned_cols=68 Identities=19% Similarity=0.282 Sum_probs=52.7
Q ss_pred ChHHHHHHHhcCCccEEEEcCccccccccCCCCEEEE--------eCCCCCHH----------HHHHHHhhcccCCCceE
Q psy16582 1 MDVQTMLSFNRGITNILVATDVLEEGIDIQSCNLVIK--------FDPPQHTR----------SYVQSKAFTVVRHKAEQ 62 (109)
Q Consensus 1 er~~~~~~F~~g~~~iLV~T~~~~~Gldi~~v~~Vi~--------~d~p~~~~----------~y~qr~GR~gR~g~~~~ 62 (109)
||+.+++.--.|.-+|+++|++++-.|.|++|-+||. ||+-.+.. +-.||.||+||. ..|.
T Consensus 458 eQ~~VF~~pp~g~RKIIlaTNIAETSITIdDVvyVIDsG~~Ke~~yD~~~~~s~l~~~wvSkAna~QR~GRAGRv-~~G~ 536 (924)
T KOG0920|consen 458 EQQAVFKRPPKGTRKIILATNIAETSITIDDVVYVIDSGLVKEKSYDPERKVSCLLLSWVSKANAKQRRGRAGRV-RPGI 536 (924)
T ss_pred HHHHhcCCCCCCcchhhhhhhhHhhcccccCeEEEEecCeeeeeeecccCCcchhheeeccccchHHhcccccCc-cCCe
Confidence 4566666666788999999999999999999999997 66554433 348999999997 5556
Q ss_pred EEEeccC
Q psy16582 63 ILSQYPK 69 (109)
Q Consensus 63 ~~~~~~~ 69 (109)
++.+++.
T Consensus 537 cy~L~~~ 543 (924)
T KOG0920|consen 537 CYHLYTR 543 (924)
T ss_pred eEEeech
Confidence 6665543
No 110
>KOG0947|consensus
Probab=97.90 E-value=1.6e-05 Score=65.87 Aligned_cols=62 Identities=19% Similarity=0.336 Sum_probs=49.1
Q ss_pred HHhcCCccEEEEcCccccccccCCCCEEEE----eC----CCCCHHHHHHHHhhcccCC--CceEEEEeccC
Q psy16582 8 SFNRGITNILVATDVLEEGIDIQSCNLVIK----FD----PPQHTRSYVQSKAFTVVRH--KAEQILSQYPK 69 (109)
Q Consensus 8 ~F~~g~~~iLV~T~~~~~Gldi~~v~~Vi~----~d----~p~~~~~y~qr~GR~gR~g--~~~~~~~~~~~ 69 (109)
-|..|-++||+||..+++|+++|.-.+|+. +| --..+-.|.|..|||||.| ..|.++.+...
T Consensus 651 LFqrGlVKVLFATETFAMGVNMPARtvVF~Sl~KhDG~efR~L~PGEytQMAGRAGRRGlD~tGTVii~~~~ 722 (1248)
T KOG0947|consen 651 LFQRGLVKVLFATETFAMGVNMPARTVVFSSLRKHDGNEFRELLPGEYTQMAGRAGRRGLDETGTVIIMCKD 722 (1248)
T ss_pred HHhcCceEEEeehhhhhhhcCCCceeEEeeehhhccCcceeecCChhHHhhhccccccccCcCceEEEEecC
Confidence 478999999999999999999998777764 11 1135778999999999998 56777776533
No 111
>KOG0390|consensus
Probab=97.87 E-value=4.4e-05 Score=62.33 Aligned_cols=63 Identities=17% Similarity=0.201 Sum_probs=55.1
Q ss_pred ChHHHHHHHhcCCc--c-EEEEcCccccccccCCCCEEEEeCCCCCHHHHHHHHhhcccCCCceEE
Q psy16582 1 MDVQTMLSFNRGIT--N-ILVATDVLEEGIDIQSCNLVIKFDPPQHTRSYVQSKAFTVVRHKAEQI 63 (109)
Q Consensus 1 er~~~~~~F~~g~~--~-iLV~T~~~~~Gldi~~v~~Vi~~d~p~~~~~y~qr~GR~gR~g~~~~~ 63 (109)
+|+.+++.|.+... . .|.+|.+.+.||++-..+.||.||+.|+++.=.|.++|+-|.|++..+
T Consensus 633 qRq~~vd~FN~p~~~~~vfLlSsKAgg~GinLiGAsRlil~D~dWNPa~d~QAmaR~~RdGQKk~v 698 (776)
T KOG0390|consen 633 QRQKLVDTFNDPESPSFVFLLSSKAGGEGLNLIGASRLILFDPDWNPAVDQQAMARAWRDGQKKPV 698 (776)
T ss_pred HHHHHHHhccCCCCCceEEEEecccccCceeecccceEEEeCCCCCchhHHHHHHHhccCCCcceE
Confidence 58899999986433 3 568888999999999999999999999999999999999999975444
No 112
>KOG0922|consensus
Probab=97.87 E-value=1e-05 Score=64.60 Aligned_cols=67 Identities=15% Similarity=0.256 Sum_probs=51.1
Q ss_pred hHHHHHHHhcCCccEEEEcCccccccccCCCCEEEE--------eCC----------CCCHHHHHHHHhhcccCCCceEE
Q psy16582 2 DVQTMLSFNRGITNILVATDVLEEGIDIQSCNLVIK--------FDP----------PQHTRSYVQSKAFTVVRHKAEQI 63 (109)
Q Consensus 2 r~~~~~~F~~g~~~iLV~T~~~~~Gldi~~v~~Vi~--------~d~----------p~~~~~y~qr~GR~gR~g~~~~~ 63 (109)
|.++++.-..|.-+|+++|++++-.+.||.+.+||. |++ |-|-++=.||.||+||.|. |.+
T Consensus 305 Q~rvF~p~p~g~RKvIlsTNIAETSlTI~GI~YVVDsG~vK~~~y~p~~g~~~L~v~~ISkasA~QRaGRAGRt~p-Gkc 383 (674)
T KOG0922|consen 305 QSRVFDPAPPGKRKVILSTNIAETSLTIDGIRYVVDSGFVKQKKYNPRTGLDSLIVVPISKASANQRAGRAGRTGP-GKC 383 (674)
T ss_pred hhccccCCCCCcceEEEEcceeeeeEEecceEEEEcCCceEEEeeccccCccceeEEechHHHHhhhcccCCCCCC-ceE
Confidence 344444444688889999999999999999999987 443 4467788999999999754 466
Q ss_pred EEeccC
Q psy16582 64 LSQYPK 69 (109)
Q Consensus 64 ~~~~~~ 69 (109)
+.++.+
T Consensus 384 yRLYte 389 (674)
T KOG0922|consen 384 YRLYTE 389 (674)
T ss_pred EEeeeH
Confidence 665543
No 113
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=97.81 E-value=0.0001 Score=60.95 Aligned_cols=66 Identities=20% Similarity=0.195 Sum_probs=50.4
Q ss_pred ChHHHHHHHhcCCccEEEEcCccccccccCCCC--EEEEeCCCCC------------------------------HHHHH
Q psy16582 1 MDVQTMLSFNRGITNILVATDVLEEGIDIQSCN--LVIKFDPPQH------------------------------TRSYV 48 (109)
Q Consensus 1 er~~~~~~F~~g~~~iLV~T~~~~~Gldi~~v~--~Vi~~d~p~~------------------------------~~~y~ 48 (109)
+|.+++++|++|+..||+||+.+.+|+|+|+.. .||...+|.. ...+.
T Consensus 713 ~r~~ll~~F~~~~~~iLlgt~sf~EGVD~~g~~l~~viI~~LPf~~p~dp~~~a~~~~~~~~g~~~f~~~~lP~A~~~l~ 792 (850)
T TIGR01407 713 SRAKIKKRFNNGEKAILLGTSSFWEGVDFPGNGLVCLVIPRLPFANPKHPLTKKYWQKLEQEGKNPFYDYVLPMAIIRLR 792 (850)
T ss_pred cHHHHHHHHHhCCCeEEEEcceeecccccCCCceEEEEEeCCCCCCCCCHHHHHHHHHHHHhcCCchHHhhHHHHHHHHH
Confidence 367899999999999999999999999999866 4666666631 12347
Q ss_pred HHHhhcccCCCc-eEEEEe
Q psy16582 49 QSKAFTVVRHKA-EQILSQ 66 (109)
Q Consensus 49 qr~GR~gR~g~~-~~~~~~ 66 (109)
|.+||.-|.... |.++.+
T Consensus 793 Qa~GRlIRs~~D~G~v~il 811 (850)
T TIGR01407 793 QALGRLIRRENDRGSIVIL 811 (850)
T ss_pred HhhccccccCCceEEEEEE
Confidence 889999997754 444444
No 114
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=97.77 E-value=8.6e-05 Score=61.36 Aligned_cols=65 Identities=17% Similarity=0.161 Sum_probs=52.3
Q ss_pred hcC-CccEEEEcCccccccccCCCC--------EEEEeCCCCCHHHHHHHHhhcccCCCceEEEEeccCchHHH
Q psy16582 10 NRG-ITNILVATDVLEEGIDIQSCN--------LVIKFDPPQHTRSYVQSKAFTVVRHKAEQILSQYPKSERYL 74 (109)
Q Consensus 10 ~~g-~~~iLV~T~~~~~Gldi~~v~--------~Vi~~d~p~~~~~y~qr~GR~gR~g~~~~~~~~~~~~~~~~ 74 (109)
..| .-.|.|||++++||.||.--. +||....|.|..-=-|..||+||.|.+|..-++..-++..+
T Consensus 470 ~AG~~GaVTIATNMAGRGTDI~Lg~~V~~~GGLhVIgTerheSrRIDnQLrGRaGRQGDpGss~f~lSLeD~L~ 543 (925)
T PRK12903 470 KAGQKGAITIATNMAGRGTDIKLSKEVLELGGLYVLGTDKAESRRIDNQLRGRSGRQGDVGESRFFISLDDQLF 543 (925)
T ss_pred hCCCCCeEEEecccccCCcCccCchhHHHcCCcEEEecccCchHHHHHHHhcccccCCCCCcceEEEecchHHH
Confidence 456 455899999999999998433 89999999998888899999999998888766655554444
No 115
>KOG0384|consensus
Probab=97.75 E-value=0.00017 Score=61.04 Aligned_cols=80 Identities=21% Similarity=0.227 Sum_probs=64.3
Q ss_pred hHHHHHHHhc---CCccEEEEcCccccccccCCCCEEEEeCCCCCHHHHHHHHhhcccCCCceE--EEEeccC---chHH
Q psy16582 2 DVQTMLSFNR---GITNILVATDVLEEGIDIQSCNLVIKFDPPQHTRSYVQSKAFTVVRHKAEQ--ILSQYPK---SERY 73 (109)
Q Consensus 2 r~~~~~~F~~---g~~~iLV~T~~~~~Gldi~~v~~Vi~~d~p~~~~~y~qr~GR~gR~g~~~~--~~~~~~~---~~~~ 73 (109)
|+.+|+.|.. ...-.|.||=+.+-||++..++.||.||.-|++.+=+|...||.|-|.+.. ++.++.. ++++
T Consensus 738 Rq~AIDhFnap~SddFvFLLSTRAGGLGINLatADTVIIFDSDWNPQNDLQAqARaHRIGQkk~VnVYRLVTk~TvEeEi 817 (1373)
T KOG0384|consen 738 RQQAIDHFNAPDSDDFVFLLSTRAGGLGINLATADTVIIFDSDWNPQNDLQAQARAHRIGQKKHVNVYRLVTKNTVEEEI 817 (1373)
T ss_pred HHHHHHhccCCCCCceEEEEecccCcccccccccceEEEeCCCCCcchHHHHHHHHHhhcccceEEEEEEecCCchHHHH
Confidence 7889999985 456689999999999999999999999999999999999999999996544 4444433 5556
Q ss_pred HhhcchHH
Q psy16582 74 LQYNSPKI 81 (109)
Q Consensus 74 ~~~~~~~~ 81 (109)
+.....+.
T Consensus 818 lERAk~Km 825 (1373)
T KOG0384|consen 818 LERAKLKM 825 (1373)
T ss_pred HHHHHHHh
Confidence 55544433
No 116
>KOG0924|consensus
Probab=97.73 E-value=1.7e-05 Score=64.08 Aligned_cols=67 Identities=16% Similarity=0.185 Sum_probs=51.3
Q ss_pred hHHHHHHHhcCCccEEEEcCccccccccCCCCEEEEeC------------------CCCCHHHHHHHHhhcccCCCceEE
Q psy16582 2 DVQTMLSFNRGITNILVATDVLEEGIDIQSCNLVIKFD------------------PPQHTRSYVQSKAFTVVRHKAEQI 63 (109)
Q Consensus 2 r~~~~~~F~~g~~~iLV~T~~~~~Gldi~~v~~Vi~~d------------------~p~~~~~y~qr~GR~gR~g~~~~~ 63 (109)
|.+++.+-..|.-+++|||++++-.+.+|.+.+||..+ .|-|-.+-.||.|||||.|. |.+
T Consensus 612 Q~kiFq~a~~~vRK~IvATNIAETSLTi~gI~yVID~Gy~K~kvyn~~~G~D~L~~~pIS~AnA~QRaGRAGRt~p-G~c 690 (1042)
T KOG0924|consen 612 QAKIFQKAEGGVRKCIVATNIAETSLTIPGIRYVIDTGYCKLKVYNPRIGMDALQIVPISQANADQRAGRAGRTGP-GTC 690 (1042)
T ss_pred hhhhcccCCCCceeEEEeccchhhceeecceEEEEecCceeeeecccccccceeEEEechhccchhhccccCCCCC-cce
Confidence 34555555577888999999999999999999999844 34456677999999999854 466
Q ss_pred EEeccC
Q psy16582 64 LSQYPK 69 (109)
Q Consensus 64 ~~~~~~ 69 (109)
+.++..
T Consensus 691 YRlYTe 696 (1042)
T KOG0924|consen 691 YRLYTE 696 (1042)
T ss_pred eeehhh
Confidence 665543
No 117
>KOG0385|consensus
Probab=97.73 E-value=0.00012 Score=59.76 Aligned_cols=65 Identities=15% Similarity=0.156 Sum_probs=55.9
Q ss_pred ChHHHHHHHhcCC---ccEEEEcCccccccccCCCCEEEEeCCCCCHHHHHHHHhhcccCCCceEEEE
Q psy16582 1 MDVQTMLSFNRGI---TNILVATDVLEEGIDIQSCNLVIKFDPPQHTRSYVQSKAFTVVRHKAEQILS 65 (109)
Q Consensus 1 er~~~~~~F~~g~---~~iLV~T~~~~~Gldi~~v~~Vi~~d~p~~~~~y~qr~GR~gR~g~~~~~~~ 65 (109)
||.++++.|.... .=.|++|-+.+-||++..++.||.||..|++..=.|..-||.|-|....+.+
T Consensus 525 eR~~aI~~fn~~~s~~FiFlLSTRAGGLGINL~aADtVIlyDSDWNPQ~DLQAmDRaHRIGQ~K~V~V 592 (971)
T KOG0385|consen 525 EREDAIEAFNAPPSEKFIFLLSTRAGGLGINLTAADTVILYDSDWNPQVDLQAMDRAHRIGQKKPVVV 592 (971)
T ss_pred HHHHHHHhcCCCCcceEEEEEeccccccccccccccEEEEecCCCCchhhhHHHHHHHhhCCcCceEE
Confidence 5889999998654 3367999999999999999999999999999999999999999996544433
No 118
>PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A.
Probab=97.71 E-value=0.00015 Score=48.89 Aligned_cols=68 Identities=22% Similarity=0.251 Sum_probs=46.6
Q ss_pred hHHHHHHHhcCCccEEEEcC--ccccccccCC--CCEEEEeCCCCC----H--------------------------HHH
Q psy16582 2 DVQTMLSFNRGITNILVATD--VLEEGIDIQS--CNLVIKFDPPQH----T--------------------------RSY 47 (109)
Q Consensus 2 r~~~~~~F~~g~~~iLV~T~--~~~~Gldi~~--v~~Vi~~d~p~~----~--------------------------~~y 47 (109)
..+.++.|+.++-.||+++. .+.+|+|+++ ++.||...+|.- + ...
T Consensus 48 ~~~~l~~~~~~~~~il~~v~~g~~~EGiD~~~~~~r~vii~glPfp~~~d~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l 127 (167)
T PF13307_consen 48 RDELLEEFKRGEGAILLAVAGGSFSEGIDFPGDLLRAVIIVGLPFPPPSDPLVQAKREYLDKQGKNPFRDWYLPPAIRKL 127 (167)
T ss_dssp HHHHHHHHCCSSSEEEEEETTSCCGSSS--ECESEEEEEEES-----TTCHHHHHHHHHHHHCCTTCHHHHTHHHHHHHH
T ss_pred HHHHHHHHHhccCeEEEEEecccEEEeecCCCchhheeeecCCCCCCCCCHHHHHHHHHHHHHhccchhhHhhHHHHHHH
Confidence 46889999999999999999 9999999996 888999888831 1 112
Q ss_pred HHHHhhcccCCCceEEEEeccC
Q psy16582 48 VQSKAFTVVRHKAEQILSQYPK 69 (109)
Q Consensus 48 ~qr~GR~gR~g~~~~~~~~~~~ 69 (109)
.|.+||+=|......++.+.++
T Consensus 128 ~Qa~GR~iR~~~D~g~i~llD~ 149 (167)
T PF13307_consen 128 KQAIGRLIRSEDDYGVIILLDS 149 (167)
T ss_dssp HHHHHCC--STT-EEEEEEESG
T ss_pred hhhcCcceeccCCcEEEEEEcC
Confidence 7889999998766555555443
No 119
>KOG0923|consensus
Probab=97.71 E-value=1.7e-05 Score=63.77 Aligned_cols=65 Identities=17% Similarity=0.182 Sum_probs=48.7
Q ss_pred hHHHHHHHhcCCccEEEEcCccccccccCCCCEEEEeCC------------------CCCHHHHHHHHhhcccCCCceEE
Q psy16582 2 DVQTMLSFNRGITNILVATDVLEEGIDIQSCNLVIKFDP------------------PQHTRSYVQSKAFTVVRHKAEQI 63 (109)
Q Consensus 2 r~~~~~~F~~g~~~iLV~T~~~~~Gldi~~v~~Vi~~d~------------------p~~~~~y~qr~GR~gR~g~~~~~ 63 (109)
|..+++.--.|--+|++||++++-.|.|++|.+||.-++ |-|-.+-.||.||+||.|.+. |
T Consensus 521 QakIFePtP~gaRKVVLATNIAETSlTIdgI~yViDpGf~K~nsynprtGmesL~v~piSKAsA~QRaGRAGRtgPGK-C 599 (902)
T KOG0923|consen 521 QAKIFEPTPPGARKVVLATNIAETSLTIDGIKYVIDPGFVKQNSYNPRTGMESLLVTPISKASANQRAGRAGRTGPGK-C 599 (902)
T ss_pred HHhhcCCCCCCceeEEEeecchhhceeecCeEEEecCccccccCcCCCcCceeEEEeeechhhhhhhccccCCCCCCc-e
Confidence 344555445677889999999999999999999997332 335666799999999987654 4
Q ss_pred EEec
Q psy16582 64 LSQY 67 (109)
Q Consensus 64 ~~~~ 67 (109)
+.++
T Consensus 600 fRLY 603 (902)
T KOG0923|consen 600 FRLY 603 (902)
T ss_pred EEee
Confidence 4443
No 120
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=97.61 E-value=0.00028 Score=57.13 Aligned_cols=53 Identities=21% Similarity=0.232 Sum_probs=46.9
Q ss_pred HHHHHHHhc-CCccEEEEcCccccccccCCCCEEEEeCCCCCHHHHHHHHhhccc
Q psy16582 3 VQTMLSFNR-GITNILVATDVLEEGIDIQSCNLVIKFDPPQHTRSYVQSKAFTVV 56 (109)
Q Consensus 3 ~~~~~~F~~-g~~~iLV~T~~~~~Gldi~~v~~Vi~~d~p~~~~~y~qr~GR~gR 56 (109)
++++++|+. +..+|||+++.+..|.|.|.++.++..-+..+. .++|.+||+-|
T Consensus 580 ~~~~~~Fk~~~~~~ilIVvdmllTGFDaP~l~tLyldKplk~h-~LlQai~R~nR 633 (667)
T TIGR00348 580 YKDLERFKKEENPKLLIVVDMLLTGFDAPILNTLYLDKPLKYH-GLLQAIARTNR 633 (667)
T ss_pred HHHHHHhcCCCCceEEEEEcccccccCCCccceEEEecccccc-HHHHHHHHhcc
Confidence 478899986 689999999999999999999999888776654 58999999999
No 121
>PF13871 Helicase_C_4: Helicase_C-like
Probab=97.53 E-value=0.00057 Score=50.04 Aligned_cols=57 Identities=16% Similarity=0.234 Sum_probs=48.6
Q ss_pred HHHHHhcCCccEEEEcCccccccccCC--------CCEEEEeCCCCCHHHHHHHHhhcccCCCce
Q psy16582 5 TMLSFNRGITNILVATDVLEEGIDIQS--------CNLVIKFDPPQHTRSYVQSKAFTVVRHKAE 61 (109)
Q Consensus 5 ~~~~F~~g~~~iLV~T~~~~~Gldi~~--------v~~Vi~~d~p~~~~~y~qr~GR~gR~g~~~ 61 (109)
..+.|.+|+..|+|.|+.++.|+.+.. -++-|...+||+....+|..||+.|.|...
T Consensus 53 e~~~F~~g~k~v~iis~AgstGiSlHAd~~~~nqr~Rv~i~le~pwsad~aiQ~~GR~hRsnQ~~ 117 (278)
T PF13871_consen 53 EKQAFMDGEKDVAIISDAGSTGISLHADRRVKNQRRRVHITLELPWSADKAIQQFGRTHRSNQVS 117 (278)
T ss_pred HHHHHhCCCceEEEEecccccccchhccccCCCCCceEEEEeeCCCCHHHHHHHhcccccccccc
Confidence 456899999999999999999998773 224577899999999999999999998643
No 122
>KOG0952|consensus
Probab=97.50 E-value=0.00035 Score=58.61 Aligned_cols=68 Identities=15% Similarity=0.194 Sum_probs=50.4
Q ss_pred hHHHHHHHhcCCccEEEEcCccccccccCCCCEEEE----eCCCC------CHHHHHHHHhhcccCC--CceEEEEeccC
Q psy16582 2 DVQTMLSFNRGITNILVATDVLEEGIDIQSCNLVIK----FDPPQ------HTRSYVQSKAFTVVRH--KAEQILSQYPK 69 (109)
Q Consensus 2 r~~~~~~F~~g~~~iLV~T~~~~~Gldi~~v~~Vi~----~d~p~------~~~~y~qr~GR~gR~g--~~~~~~~~~~~ 69 (109)
|.-.-+-|..|.++||+||..++-|+++|.--++|- ||... +.-+-+|-.|||||.. ..|..+..+..
T Consensus 411 R~l~E~~F~~G~i~vL~cTaTLAwGVNLPA~aViIKGT~~ydsskg~f~dlgilDVlQifGRAGRPqFd~~G~giIiTt~ 490 (1230)
T KOG0952|consen 411 RQLVEKEFKEGHIKVLCCTATLAWGVNLPAYAVIIKGTQVYDSSKGSFVDLGILDVLQIFGRAGRPQFDSSGEGIIITTR 490 (1230)
T ss_pred HHHHHHHHhcCCceEEEecceeeeccCCcceEEEecCCcccccccCceeeehHHHHHHHHhccCCCCCCCCceEEEEecc
Confidence 444557799999999999999999999997655553 55443 3556799999999975 45555555433
No 123
>KOG0951|consensus
Probab=97.48 E-value=0.00027 Score=60.29 Aligned_cols=57 Identities=21% Similarity=0.268 Sum_probs=49.4
Q ss_pred hHHHHHHHhcCCccEEEEcCccccccccCCCCEEEE----eCCC------CCHHHHHHHHhhcccCC
Q psy16582 2 DVQTMLSFNRGITNILVATDVLEEGIDIQSCNLVIK----FDPP------QHTRSYVQSKAFTVVRH 58 (109)
Q Consensus 2 r~~~~~~F~~g~~~iLV~T~~~~~Gldi~~v~~Vi~----~d~p------~~~~~y~qr~GR~gR~g 58 (109)
|+.+-+-|+.|.+++||+|-.++.|++.|.-.++|- ||+- .++.+-.|+.||+||.+
T Consensus 622 R~~~EdLf~~g~iqvlvstatlawgvnlpahtViikgtqvy~pekg~w~elsp~dv~qmlgragrp~ 688 (1674)
T KOG0951|consen 622 RELVEDLFADGHIQVLVSTATLAWGVNLPAHTVIIKGTQVYDPEKGRWTELSPLDVMQMLGRAGRPQ 688 (1674)
T ss_pred HHHHHHHHhcCceeEEEeehhhhhhcCCCcceEEecCccccCcccCccccCCHHHHHHHHhhcCCCc
Confidence 556677899999999999999999999999888874 6643 57889999999999976
No 124
>smart00492 HELICc3 helicase superfamily c-terminal domain.
Probab=97.45 E-value=0.00052 Score=45.37 Aligned_cols=40 Identities=25% Similarity=0.314 Sum_probs=32.9
Q ss_pred hHHHHHHHhcCC-ccEEEEcCccccccccCC--CCEEEEeCCC
Q psy16582 2 DVQTMLSFNRGI-TNILVATDVLEEGIDIQS--CNLVIKFDPP 41 (109)
Q Consensus 2 r~~~~~~F~~g~-~~iLV~T~~~~~Gldi~~--v~~Vi~~d~p 41 (109)
..+++++|+... ..||++|.-+++|+|+|+ ++.||...+|
T Consensus 36 ~~~~l~~f~~~~~~~iL~~~~~~~EGiD~~g~~~r~vii~glP 78 (141)
T smart00492 36 TGKLLEKYVEACENAILLATARFSEGVDFPGDYLRAVIIDGLP 78 (141)
T ss_pred HHHHHHHHHHcCCCEEEEEccceecceecCCCCeeEEEEEecC
Confidence 367899998654 379999988999999996 6788888877
No 125
>KOG0948|consensus
Probab=97.44 E-value=2.7e-05 Score=63.38 Aligned_cols=62 Identities=19% Similarity=0.354 Sum_probs=48.8
Q ss_pred HHhcCCccEEEEcCccccccccCCCCEEEE----eCCC----CCHHHHHHHHhhcccCC--CceEEEEeccC
Q psy16582 8 SFNRGITNILVATDVLEEGIDIQSCNLVIK----FDPP----QHTRSYVQSKAFTVVRH--KAEQILSQYPK 69 (109)
Q Consensus 8 ~F~~g~~~iLV~T~~~~~Gldi~~v~~Vi~----~d~p----~~~~~y~qr~GR~gR~g--~~~~~~~~~~~ 69 (109)
-|..|-+++|.||..++.|+++|.-.+|.- ||=- -+.-.|+|..|||||.| ..|.++.+.+.
T Consensus 467 LFqEGLvKvLFATETFsiGLNMPAkTVvFT~~rKfDG~~fRwissGEYIQMSGRAGRRG~DdrGivIlmiDe 538 (1041)
T KOG0948|consen 467 LFQEGLVKVLFATETFSIGLNMPAKTVVFTAVRKFDGKKFRWISSGEYIQMSGRAGRRGIDDRGIVILMIDE 538 (1041)
T ss_pred HHhccHHHHHHhhhhhhhccCCcceeEEEeeccccCCcceeeecccceEEecccccccCCCCCceEEEEecC
Confidence 478999999999999999999998777753 3322 24567999999999998 45777776543
No 126
>KOG0387|consensus
Probab=97.44 E-value=0.00025 Score=58.02 Aligned_cols=61 Identities=21% Similarity=0.234 Sum_probs=54.2
Q ss_pred hHHHHHHHhcCCcc--EEEEcCccccccccCCCCEEEEeCCCCCHHHHHHHHhhcccCCCceE
Q psy16582 2 DVQTMLSFNRGITN--ILVATDVLEEGIDIQSCNLVIKFDPPQHTRSYVQSKAFTVVRHKAEQ 62 (109)
Q Consensus 2 r~~~~~~F~~g~~~--iLV~T~~~~~Gldi~~v~~Vi~~d~p~~~~~y~qr~GR~gR~g~~~~ 62 (109)
|...+++|..++.- .|++|-+.+-|+++..++-||.||+-|+++.=.|..-|+-|.|.+..
T Consensus 586 R~~lVd~Fne~~s~~VFLLTTrvGGLGlNLTgAnRVIIfDPdWNPStD~QAreRawRiGQkkd 648 (923)
T KOG0387|consen 586 RQKLVDRFNEDESIFVFLLTTRVGGLGLNLTGANRVIIFDPDWNPSTDNQARERAWRIGQKKD 648 (923)
T ss_pred hhHHHHhhcCCCceEEEEEEecccccccccccCceEEEECCCCCCccchHHHHHHHhhcCccc
Confidence 67889999977554 56899999999999999999999999999999999999999995433
No 127
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=97.40 E-value=0.00037 Score=56.87 Aligned_cols=65 Identities=15% Similarity=0.084 Sum_probs=51.3
Q ss_pred hcCC-ccEEEEcCccccccccCCCC---------------EEEEeCCCCCHHHHHHHHhhcccCCCceEEEEeccCchHH
Q psy16582 10 NRGI-TNILVATDVLEEGIDIQSCN---------------LVIKFDPPQHTRSYVQSKAFTVVRHKAEQILSQYPKSERY 73 (109)
Q Consensus 10 ~~g~-~~iLV~T~~~~~Gldi~~v~---------------~Vi~~d~p~~~~~y~qr~GR~gR~g~~~~~~~~~~~~~~~ 73 (109)
..|+ -.|-|||++++||.||.-=. +||-...+.|..-=-|..||+||.|.+|..-++..-++..
T Consensus 471 ~AG~~gaVTIATNMAGRGTDIkLg~~~~~~~~~V~~~GGLhVIgTerheSrRID~QLrGRaGRQGDpGss~f~lSleDdl 550 (764)
T PRK12326 471 EAGKYGAVTVSTQMAGRGTDIRLGGSDEADRDRVAELGGLHVIGTGRHRSERLDNQLRGRAGRQGDPGSSVFFVSLEDDV 550 (764)
T ss_pred hcCCCCcEEEEecCCCCccCeecCCCcccchHHHHHcCCcEEEeccCCchHHHHHHHhcccccCCCCCceeEEEEcchhH
Confidence 3454 44889999999999987321 7898999999999999999999999888877665544444
Q ss_pred H
Q psy16582 74 L 74 (109)
Q Consensus 74 ~ 74 (109)
+
T Consensus 551 ~ 551 (764)
T PRK12326 551 V 551 (764)
T ss_pred H
Confidence 3
No 128
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=97.37 E-value=0.001 Score=54.20 Aligned_cols=63 Identities=16% Similarity=0.146 Sum_probs=54.6
Q ss_pred ChHHHHHHHhcC--CccEEEEcCccccccccCCCCEEEEeCCCCCHHHHHHHHhhcccCCCceEE
Q psy16582 1 MDVQTMLSFNRG--ITNILVATDVLEEGIDIQSCNLVIKFDPPQHTRSYVQSKAFTVVRHKAEQI 63 (109)
Q Consensus 1 er~~~~~~F~~g--~~~iLV~T~~~~~Gldi~~v~~Vi~~d~p~~~~~y~qr~GR~gR~g~~~~~ 63 (109)
+|.+.+++|.++ ..-.|++|.+.+.|++....++||+||+.+++....|...|+-|.|....+
T Consensus 749 ~r~~~i~~f~~~~~~~v~lls~kagg~glnLt~a~~vi~~d~~wnp~~~~Qa~dRa~RigQ~~~v 813 (866)
T COG0553 749 RRQELIDRFNADEEEKVFLLSLKAGGLGLNLTGADTVILFDPWWNPAVELQAIDRAHRIGQKRPV 813 (866)
T ss_pred hHHHHHHHhhcCCCCceEEEEecccccceeecccceEEEeccccChHHHHHHHHHHHHhcCccee
Confidence 378899999986 344668888999999999999999999999999999999999998865443
No 129
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=97.34 E-value=0.00096 Score=55.75 Aligned_cols=65 Identities=20% Similarity=0.107 Sum_probs=52.0
Q ss_pred hcCC-ccEEEEcCccccccccCCC---C-----EEEEeCCCCCHHHHHHHHhhcccCCCceEEEEeccCchHHH
Q psy16582 10 NRGI-TNILVATDVLEEGIDIQSC---N-----LVIKFDPPQHTRSYVQSKAFTVVRHKAEQILSQYPKSERYL 74 (109)
Q Consensus 10 ~~g~-~~iLV~T~~~~~Gldi~~v---~-----~Vi~~d~p~~~~~y~qr~GR~gR~g~~~~~~~~~~~~~~~~ 74 (109)
..|+ -.|.|||++++||.||.-= . +||.-..|.|..---|..||+||.|.+|..-++..-++..+
T Consensus 612 ~AG~~g~VTIATNmAGRGTDIkl~~~v~~~GGLhVIgTer~es~Rid~Ql~GRagRQGdpGss~f~lSlEDdL~ 685 (970)
T PRK12899 612 GAGKLGAVTVATNMAGRGTDIKLDEEAVAVGGLYVIGTSRHQSRRIDRQLRGRCARLGDPGAAKFFLSFEDRLM 685 (970)
T ss_pred hcCCCCcEEEeeccccCCcccccCchHHhcCCcEEEeeccCchHHHHHHHhcccccCCCCCceeEEEEcchHHH
Confidence 3454 4588999999999998732 2 68889999999999999999999999888777665555544
No 130
>smart00491 HELICc2 helicase superfamily c-terminal domain.
Probab=97.31 E-value=0.0015 Score=43.15 Aligned_cols=40 Identities=23% Similarity=0.326 Sum_probs=32.1
Q ss_pred HHHHHHHhcCCc---cEEEEcCc--cccccccCC--CCEEEEeCCCC
Q psy16582 3 VQTMLSFNRGIT---NILVATDV--LEEGIDIQS--CNLVIKFDPPQ 42 (109)
Q Consensus 3 ~~~~~~F~~g~~---~iLV~T~~--~~~Gldi~~--v~~Vi~~d~p~ 42 (109)
.+++++|++..- .||+++.- +++|+|+|+ ++.||...+|.
T Consensus 34 ~~~l~~f~~~~~~~g~iL~~v~~G~~~EGiD~~g~~~r~vii~glPf 80 (142)
T smart00491 34 EELLEKYSAACEARGALLLAVARGKVSEGIDFPDDLGRAVIIVGIPF 80 (142)
T ss_pred HHHHHHHHHhcCCCCEEEEEEeCCeeecceecCCCccEEEEEEecCC
Confidence 478999997543 58888876 999999996 77899888773
No 131
>KOG0701|consensus
Probab=97.27 E-value=6.7e-05 Score=65.10 Aligned_cols=58 Identities=41% Similarity=0.650 Sum_probs=54.6
Q ss_pred hHHHHHHHhcCCccEEEEcCccccccccCCCCEEEEeCCCCCHHHHHHHHhhcccCCC
Q psy16582 2 DVQTMLSFNRGITNILVATDVLEEGIDIQSCNLVIKFDPPQHTRSYVQSKAFTVVRHK 59 (109)
Q Consensus 2 r~~~~~~F~~g~~~iLV~T~~~~~Gldi~~v~~Vi~~d~p~~~~~y~qr~GR~gR~g~ 59 (109)
+.+++..|....+++|++|.++.+|+|++.|+.|+.++.|....+|+|..||+.+...
T Consensus 343 ~~~vl~~~~~~~ln~L~~~~~~~e~~d~~~~~~~~~~~~~~~~~~~vq~~~r~~~~~~ 400 (1606)
T KOG0701|consen 343 QAEVLRRFHFHELNLLIATSVLEEGVDVPKCNLVVLFDAPTYYRSYVQKKGRARAADS 400 (1606)
T ss_pred hHHHHHHHhhhhhhHHHHHHHHHhhcchhhhhhheeccCcchHHHHHHhhcccccchh
Confidence 6789999999999999999999999999999999999999999999999999987543
No 132
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=97.25 E-value=0.00062 Score=57.33 Aligned_cols=64 Identities=20% Similarity=0.267 Sum_probs=51.0
Q ss_pred HHHHHHHhcCCccEEEEcCccccccccCCCCEEE----EeC----CCCCHHHHHHHHhhcccCCC--ceEEEEe
Q psy16582 3 VQTMLSFNRGITNILVATDVLEEGIDIQSCNLVI----KFD----PPQHTRSYVQSKAFTVVRHK--AEQILSQ 66 (109)
Q Consensus 3 ~~~~~~F~~g~~~iLV~T~~~~~Gldi~~v~~Vi----~~d----~p~~~~~y~qr~GR~gR~g~--~~~~~~~ 66 (109)
.-+-+-|..|-++|+.+|.+++.|+++|--.+|+ .|| -..+...|.|..||+||.|- .|.+++.
T Consensus 460 ~~vE~Lfq~GLvkvvFaTeT~s~GiNmPartvv~~~l~K~dG~~~r~L~~gEy~QmsGRAGRRGlD~~G~vI~~ 533 (1041)
T COG4581 460 ELVEELFQEGLVKVVFATETFAIGINMPARTVVFTSLSKFDGNGHRWLSPGEYTQMSGRAGRRGLDVLGTVIVI 533 (1041)
T ss_pred HHHHHHHhccceeEEeehhhhhhhcCCcccceeeeeeEEecCCceeecChhHHHHhhhhhccccccccceEEEe
Confidence 4455678999999999999999999999877764 244 34578899999999999983 4555554
No 133
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=97.18 E-value=0.0018 Score=54.60 Aligned_cols=63 Identities=14% Similarity=0.118 Sum_probs=49.4
Q ss_pred cC-CccEEEEcCccccccccCC---CC-----EEEEeCCCCCHHHHHHHHhhcccCCCceEEEEeccCchHH
Q psy16582 11 RG-ITNILVATDVLEEGIDIQS---CN-----LVIKFDPPQHTRSYVQSKAFTVVRHKAEQILSQYPKSERY 73 (109)
Q Consensus 11 ~g-~~~iLV~T~~~~~Gldi~~---v~-----~Vi~~d~p~~~~~y~qr~GR~gR~g~~~~~~~~~~~~~~~ 73 (109)
.| .-.|-|||++++||.||.= |. +||--..+.|..---|..||+||.|.+|..-++..-++..
T Consensus 673 AG~~GaVTIATNMAGRGTDIkLg~~V~e~GGL~VIgTerheSrRID~QLrGRaGRQGDPGsS~f~lSLEDdL 744 (1112)
T PRK12901 673 AGQPGTVTIATNMAGRGTDIKLSPEVKAAGGLAIIGTERHESRRVDRQLRGRAGRQGDPGSSQFYVSLEDNL 744 (1112)
T ss_pred cCCCCcEEEeccCcCCCcCcccchhhHHcCCCEEEEccCCCcHHHHHHHhcccccCCCCCcceEEEEcccHH
Confidence 44 3448899999999999871 22 6888889999999999999999999888766665444433
No 134
>COG4889 Predicted helicase [General function prediction only]
Probab=97.11 E-value=0.0004 Score=57.86 Aligned_cols=51 Identities=27% Similarity=0.408 Sum_probs=46.6
Q ss_pred HHhcCCccEEEEcCccccccccCCCCEEEEeCCCCCHHHHHHHHhhcccCC
Q psy16582 8 SFNRGITNILVATDVLEEGIDIQSCNLVIKFDPPQHTRSYVQSKAFTVVRH 58 (109)
Q Consensus 8 ~F~~g~~~iLV~T~~~~~Gldi~~v~~Vi~~d~p~~~~~y~qr~GR~gR~g 58 (109)
.|...+++||----++++|+|+|..+.||-||+-.+.-+.+|.+||+-|..
T Consensus 523 ~~~~neckIlSNaRcLSEGVDVPaLDsViFf~pr~smVDIVQaVGRVMRKa 573 (1518)
T COG4889 523 TFEPNECKILSNARCLSEGVDVPALDSVIFFDPRSSMVDIVQAVGRVMRKA 573 (1518)
T ss_pred CCCcchheeeccchhhhcCCCccccceEEEecCchhHHHHHHHHHHHHHhC
Confidence 456678999988889999999999999999999999999999999999954
No 135
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=97.10 E-value=0.0033 Score=52.48 Aligned_cols=77 Identities=14% Similarity=0.173 Sum_probs=54.7
Q ss_pred hcC-CccEEEEcCccccccccC--------------------------------CCC-----EEEEeCCCCCHHHHHHHH
Q psy16582 10 NRG-ITNILVATDVLEEGIDIQ--------------------------------SCN-----LVIKFDPPQHTRSYVQSK 51 (109)
Q Consensus 10 ~~g-~~~iLV~T~~~~~Gldi~--------------------------------~v~-----~Vi~~d~p~~~~~y~qr~ 51 (109)
..| .-.|-|||++++||.||. .|. +||--..+.|..-=-|..
T Consensus 493 ~AG~~GaVTIATNMAGRGTDIkLg~n~~~~~~~~~~~~~~~~~~~~~~~~~~~e~V~e~GGLhVIgTerheSrRID~QLr 572 (913)
T PRK13103 493 QAGRPGALTIATNMAGRGTDILLGGNWEVEVAALENPTPEQIAQIKADWQKRHQQVIEAGGLHVIASERHESRRIDNQLR 572 (913)
T ss_pred cCCCCCcEEEeccCCCCCCCEecCCchHHHHHhhhhhhHHHHHHHHHHHHhHHHHHHHcCCCEEEeeccCchHHHHHHhc
Confidence 455 445889999999999994 111 688888888888889999
Q ss_pred hhcccCCCceEEEEeccCchHHHh-hcchHHHHHHH
Q psy16582 52 AFTVVRHKAEQILSQYPKSERYLQ-YNSPKINRLLQ 86 (109)
Q Consensus 52 GR~gR~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 86 (109)
||+||.|.+|..-++..-++..+. +....+..++.
T Consensus 573 GRaGRQGDPGsS~f~lSlED~Lmr~fg~~~~~~~~~ 608 (913)
T PRK13103 573 GRAGRQGDPGSSRFYLSLEDSLMRIFASDRVKNFMK 608 (913)
T ss_pred cccccCCCCCceEEEEEcCcHHHHhhCcHHHHHHHH
Confidence 999999988887666555554443 32333333333
No 136
>KOG0392|consensus
Probab=97.06 E-value=0.0016 Score=55.68 Aligned_cols=63 Identities=13% Similarity=0.138 Sum_probs=56.7
Q ss_pred ChHHHHHHHhcC-CccEE-EEcCccccccccCCCCEEEEeCCCCCHHHHHHHHhhcccCCCceEE
Q psy16582 1 MDVQTMLSFNRG-ITNIL-VATDVLEEGIDIQSCNLVIKFDPPQHTRSYVQSKAFTVVRHKAEQI 63 (109)
Q Consensus 1 er~~~~~~F~~g-~~~iL-V~T~~~~~Gldi~~v~~Vi~~d~p~~~~~y~qr~GR~gR~g~~~~~ 63 (109)
+|+++.++|.++ .+++| .+|-+.+-|+++...+.||.++=.|+++.=.|.+-||.|-|.+-.+
T Consensus 1381 ~R~kiV~~FN~DptIDvLlLTThVGGLGLNLTGADTVVFvEHDWNPMrDLQAMDRAHRIGQKrvV 1445 (1549)
T KOG0392|consen 1381 DRQKIVERFNEDPTIDVLLLTTHVGGLGLNLTGADTVVFVEHDWNPMRDLQAMDRAHRIGQKRVV 1445 (1549)
T ss_pred HHHHHHHHhcCCCceeEEEEeeeccccccccCCCceEEEEecCCCchhhHHHHHHHHhhcCceee
Confidence 488999999988 88976 6777999999999999999999999999999999999999976443
No 137
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=97.03 E-value=0.0034 Score=52.65 Aligned_cols=65 Identities=17% Similarity=0.178 Sum_probs=49.7
Q ss_pred hHHHHHHHhcCCccEEEEcCccccccccCC--CCEEEEeCCCC----C--------------------------HHHHHH
Q psy16582 2 DVQTMLSFNRGITNILVATDVLEEGIDIQS--CNLVIKFDPPQ----H--------------------------TRSYVQ 49 (109)
Q Consensus 2 r~~~~~~F~~g~~~iLV~T~~~~~Gldi~~--v~~Vi~~d~p~----~--------------------------~~~y~q 49 (109)
+.++++.|++++-.||++|+.+.+|+|+|+ +.+||...+|. + ...+.|
T Consensus 793 r~~l~~~F~~~~~~iLlG~~sFwEGVD~pg~~l~~viI~kLPF~~p~dp~~~a~~~~~~~~g~~~F~~~~lP~A~~~lkQ 872 (928)
T PRK08074 793 RARLTKQFQQFDKAILLGTSSFWEGIDIPGDELSCLVIVRLPFAPPDQPVMEAKSEWAKEQGENPFQELSLPQAVLRFKQ 872 (928)
T ss_pred HHHHHHHHHhcCCeEEEecCcccCccccCCCceEEEEEecCCCCCCCCHHHHHHHHHHHHhCCCchhhhhhHHHHHHHHh
Confidence 578899999998889999999999999996 57788766663 1 222378
Q ss_pred HHhhcccCCC-ceEEEEe
Q psy16582 50 SKAFTVVRHK-AEQILSQ 66 (109)
Q Consensus 50 r~GR~gR~g~-~~~~~~~ 66 (109)
-+||.=|... .|.++++
T Consensus 873 g~GRlIRs~~D~G~v~il 890 (928)
T PRK08074 873 GFGRLIRTETDRGTVFVL 890 (928)
T ss_pred hhhhhcccCCceEEEEEe
Confidence 8899988764 4455544
No 138
>PRK14873 primosome assembly protein PriA; Provisional
Probab=96.91 E-value=0.0033 Score=51.05 Aligned_cols=64 Identities=17% Similarity=0.184 Sum_probs=46.4
Q ss_pred hHHHHHHHhcCCccEEEEcC----ccccccccCCCCEEEEeCC------CC------CHHHHHHHHhhcccCCCceEEEE
Q psy16582 2 DVQTMLSFNRGITNILVATD----VLEEGIDIQSCNLVIKFDP------PQ------HTRSYVQSKAFTVVRHKAEQILS 65 (109)
Q Consensus 2 r~~~~~~F~~g~~~iLV~T~----~~~~Gldi~~v~~Vi~~d~------p~------~~~~y~qr~GR~gR~g~~~~~~~ 65 (109)
++.++++|. ++.+|||+|. +++ +++.+|+..|. |. ....+.|-.||+||.+++|.++.
T Consensus 461 ~d~~l~~~~-~~~~IlVGTqgaepm~~-----g~~~lV~ildaD~~L~~pDfRA~Er~~qll~qvagragr~~~~G~V~i 534 (665)
T PRK14873 461 GDQVVDTVD-AGPALVVATPGAEPRVE-----GGYGAALLLDAWALLGRQDLRAAEDTLRRWMAAAALVRPRADGGQVVV 534 (665)
T ss_pred hHHHHHhhc-cCCCEEEECCCCccccc-----CCceEEEEEcchhhhcCCCcChHHHHHHHHHHHHHhhcCCCCCCEEEE
Confidence 456889997 5999999998 555 46787766553 21 24556889999999888888877
Q ss_pred eccCch
Q psy16582 66 QYPKSE 71 (109)
Q Consensus 66 ~~~~~~ 71 (109)
.+..+.
T Consensus 535 q~~p~~ 540 (665)
T PRK14873 535 VAESSL 540 (665)
T ss_pred EeCCCC
Confidence 754433
No 139
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=96.90 E-value=0.0029 Score=50.86 Aligned_cols=65 Identities=18% Similarity=0.150 Sum_probs=49.6
Q ss_pred hHHHHHHHhcCCc-cEEEEcCccccccccCC--CCEEEEeCCCCC------------------------------HHHHH
Q psy16582 2 DVQTMLSFNRGIT-NILVATDVLEEGIDIQS--CNLVIKFDPPQH------------------------------TRSYV 48 (109)
Q Consensus 2 r~~~~~~F~~g~~-~iLV~T~~~~~Gldi~~--v~~Vi~~d~p~~------------------------------~~~y~ 48 (109)
+.+.+++|+.+.- -++|+|..+.+|+|+|+ +..||...+|.- .....
T Consensus 516 ~~~~l~~f~~~~~~~~lv~~gsf~EGVD~~g~~l~~vvI~~lPfp~p~dp~~~~r~~~~~~~g~~~f~~~~l~~A~~~l~ 595 (654)
T COG1199 516 REELLEKFKASGEGLILVGGGSFWEGVDFPGDALRLVVIVGLPFPNPDDPLLKARLEFLKRLGGDPFEEFYLPPAVIKLR 595 (654)
T ss_pred HHHHHHHHHHhcCCeEEEeeccccCcccCCCCCeeEEEEEecCCCCCCCHHHHHHHHHHHHhcCCCceEeehHHHHHHHH
Confidence 4578899987654 89999999999999996 677888877732 34458
Q ss_pred HHHhhcccCCC-ceEEEEe
Q psy16582 49 QSKAFTVVRHK-AEQILSQ 66 (109)
Q Consensus 49 qr~GR~gR~g~-~~~~~~~ 66 (109)
|.+||+=|... .|.++.+
T Consensus 596 QavGRlIR~~~D~G~ivll 614 (654)
T COG1199 596 QAVGRLIRSEDDRGVIVLL 614 (654)
T ss_pred HhhccccccCCCceEEEEe
Confidence 99999998654 4555544
No 140
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=96.69 E-value=0.0087 Score=49.73 Aligned_cols=66 Identities=20% Similarity=0.192 Sum_probs=48.6
Q ss_pred hHHHHHHHhcCCccEEEEcCccccccccCC--CCEEEEeCCCC----C--------------------------HHHHHH
Q psy16582 2 DVQTMLSFNRGITNILVATDVLEEGIDIQS--CNLVIKFDPPQ----H--------------------------TRSYVQ 49 (109)
Q Consensus 2 r~~~~~~F~~g~~~iLV~T~~~~~Gldi~~--v~~Vi~~d~p~----~--------------------------~~~y~q 49 (109)
+.+++++|++++-.||++|+.+.+|+|+|. ...||...+|. + ...+.|
T Consensus 683 ~~~l~~~F~~~~~~vLlG~~sFwEGVD~p~~~~~~viI~kLPF~~P~dP~~~a~~~~~~~~g~~~F~~~~lP~A~iklkQ 762 (820)
T PRK07246 683 AYNIKKRFDRGEQQILLGLGSFWEGVDFVQADRMIEVITRLPFDNPEDPFVKKMNQYLLQEGKNPFYDYFLPMTILRLKQ 762 (820)
T ss_pred HHHHHHHHHcCCCeEEEecchhhCCCCCCCCCeEEEEEecCCCCCCCCHHHHHHHHHHHHhCCCchhheeHHHHHHHHHH
Confidence 456899999998899999999999999973 45566655552 2 223488
Q ss_pred HHhhcccCCC-ceEEEEec
Q psy16582 50 SKAFTVVRHK-AEQILSQY 67 (109)
Q Consensus 50 r~GR~gR~g~-~~~~~~~~ 67 (109)
-+||.=|... .|.++.+-
T Consensus 763 g~GRLIRs~~D~Gvv~ilD 781 (820)
T PRK07246 763 AIGRTMRREDQKSAVLILD 781 (820)
T ss_pred HhcccccCCCCcEEEEEEC
Confidence 8999988764 55655543
No 141
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=96.69 E-value=0.009 Score=48.77 Aligned_cols=40 Identities=20% Similarity=0.321 Sum_probs=32.8
Q ss_pred hHHHHHHHh----cCCccEEEEcCccccccccCC--CCEEEEeCCC
Q psy16582 2 DVQTMLSFN----RGITNILVATDVLEEGIDIQS--CNLVIKFDPP 41 (109)
Q Consensus 2 r~~~~~~F~----~g~~~iLV~T~~~~~Gldi~~--v~~Vi~~d~p 41 (109)
+.++++.|+ .|+-.||++|..+.+|+|+|+ +.+||...+|
T Consensus 570 ~~~ll~~f~~~~~~~~~~VL~g~~sf~EGVD~pGd~l~~vII~kLP 615 (697)
T PRK11747 570 RQRLLEKHKKRVDEGEGSVLFGLQSFAEGLDLPGDYLTQVIITKIP 615 (697)
T ss_pred HHHHHHHHHHHhccCCCeEEEEeccccccccCCCCceEEEEEEcCC
Confidence 456777776 467789999999999999996 7889887766
No 142
>KOG0389|consensus
Probab=96.55 E-value=0.0066 Score=50.04 Aligned_cols=68 Identities=16% Similarity=0.056 Sum_probs=55.6
Q ss_pred ChHHHHHHHhcC-Ccc-EEEEcCccccccccCCCCEEEEeCCCCCHHHHHHHHhhcccCCC--ceEEEEecc
Q psy16582 1 MDVQTMLSFNRG-ITN-ILVATDVLEEGIDIQSCNLVIKFDPPQHTRSYVQSKAFTVVRHK--AEQILSQYP 68 (109)
Q Consensus 1 er~~~~~~F~~g-~~~-iLV~T~~~~~Gldi~~v~~Vi~~d~p~~~~~y~qr~GR~gR~g~--~~~~~~~~~ 68 (109)
.|+.++++|... .+. .|.+|-+.+-||++..+++||.||+..++.+=.|.--|+.|.|. ...++.+..
T Consensus 815 ~RQ~lId~Fn~d~difVFLLSTKAGG~GINLt~An~VIihD~dFNP~dD~QAEDRcHRvGQtkpVtV~rLIt 886 (941)
T KOG0389|consen 815 DRQDLIDEFNTDKDIFVFLLSTKAGGFGINLTCANTVIIHDIDFNPYDDKQAEDRCHRVGQTKPVTVYRLIT 886 (941)
T ss_pred HHHHHHHhhccCCceEEEEEeeccCcceecccccceEEEeecCCCCcccchhHHHHHhhCCcceeEEEEEEe
Confidence 378999999854 444 67999999999999999999999999999888888888888884 445555543
No 143
>KOG0925|consensus
Probab=96.45 E-value=0.0036 Score=49.37 Aligned_cols=55 Identities=18% Similarity=0.230 Sum_probs=44.3
Q ss_pred ccEEEEcCccccccccCCCCEEEEeCC------------------CCCHHHHHHHHhhcccCCCceEEEEeccC
Q psy16582 14 TNILVATDVLEEGIDIQSCNLVIKFDP------------------PQHTRSYVQSKAFTVVRHKAEQILSQYPK 69 (109)
Q Consensus 14 ~~iLV~T~~~~~Gldi~~v~~Vi~~d~------------------p~~~~~y~qr~GR~gR~g~~~~~~~~~~~ 69 (109)
-+|+|+|++++-.+.+++|.+||.-++ |-|-.+-.||.||+||. +.|.++.++++
T Consensus 314 RkvVvstniaetsltidgiv~VIDpGf~kqkVYNPRIRvesllv~PISkasA~qR~gragrt-~pGkcfrLYte 386 (699)
T KOG0925|consen 314 RKVVVSTNIAETSLTIDGIVFVIDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRT-RPGKCFRLYTE 386 (699)
T ss_pred ceEEEEecchheeeeeccEEEEecCchhhhcccCcceeeeeeeeccchHhHHHHHhhhccCC-CCCceEEeecH
Confidence 469999999999999999999998443 45677778999999986 56677776654
No 144
>TIGR00596 rad1 DNA repair protein (rad1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit
Probab=96.39 E-value=0.011 Score=49.14 Aligned_cols=47 Identities=19% Similarity=0.183 Sum_probs=37.5
Q ss_pred EEcCccccccccCC----------------------C----------CEEEEeCCCCCHHHHHH--HHhhcccCCCceEE
Q psy16582 18 VATDVLEEGIDIQS----------------------C----------NLVIKFDPPQHTRSYVQ--SKAFTVVRHKAEQI 63 (109)
Q Consensus 18 V~T~~~~~Gldi~~----------------------v----------~~Vi~~d~p~~~~~y~q--r~GR~gR~g~~~~~ 63 (109)
|+|+..+.|+|++. + ++||.|++-.+...-+| |.||.||. +.+
T Consensus 431 ~~~~~~~e~~d~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~L~e~~P~~VImYEP~~sfIR~IEvyra~r~~r~---~rV 507 (814)
T TIGR00596 431 FEIIDEENDIDIYSGAEFDNLPQHITHFLWGERDEYVLRCSLEELMPRYVIMYEPDISFIRQLEVYKASRPLRP---LRV 507 (814)
T ss_pred ccccccccccccchhhccccccceeeeecccccchhhHHHHHhhhCCCEEEEECCChHHHHHHHHHHccCCCCC---cEE
Confidence 77899999999998 5 89999998888888888 78877775 445
Q ss_pred EEec
Q psy16582 64 LSQY 67 (109)
Q Consensus 64 ~~~~ 67 (109)
++++
T Consensus 508 yfL~ 511 (814)
T TIGR00596 508 YFLY 511 (814)
T ss_pred EEEE
Confidence 5543
No 145
>KOG1123|consensus
Probab=96.26 E-value=0.02 Score=45.59 Aligned_cols=58 Identities=16% Similarity=0.226 Sum_probs=48.6
Q ss_pred ChHHHHHHHh-cCCccEEEEcCccccccccCCCCEEEEeCCCC-CHHHHHHHHhhcccCC
Q psy16582 1 MDVQTMLSFN-RGITNILVATDVLEEGIDIQSCNLVIKFDPPQ-HTRSYVQSKAFTVVRH 58 (109)
Q Consensus 1 er~~~~~~F~-~g~~~iLV~T~~~~~Gldi~~v~~Vi~~d~p~-~~~~y~qr~GR~gR~g 58 (109)
||.+|++.|+ +..++-+.-+.+..-.+|+|..+++|+...-. |-.+=-||.||.-|..
T Consensus 576 ERm~ILqnFq~n~~vNTIFlSKVgDtSiDLPEAnvLIQISSH~GSRRQEAQRLGRILRAK 635 (776)
T KOG1123|consen 576 ERMKILQNFQTNPKVNTIFLSKVGDTSIDLPEANVLIQISSHGGSRRQEAQRLGRILRAK 635 (776)
T ss_pred HHHHHHHhcccCCccceEEEeeccCccccCCcccEEEEEcccccchHHHHHHHHHHHHHh
Confidence 6899999998 56888888899999999999999999976553 4556689999998753
No 146
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=96.22 E-value=0.024 Score=46.29 Aligned_cols=66 Identities=18% Similarity=0.227 Sum_probs=48.8
Q ss_pred hHHHHHHHhc----CCccEEEEc--CccccccccCC--CCEEEEeCCCC-CH----------------------------
Q psy16582 2 DVQTMLSFNR----GITNILVAT--DVLEEGIDIQS--CNLVIKFDPPQ-HT---------------------------- 44 (109)
Q Consensus 2 r~~~~~~F~~----g~~~iLV~T--~~~~~Gldi~~--v~~Vi~~d~p~-~~---------------------------- 44 (109)
+++++++|+. |.-.||.|+ .-+++|||+++ ++.||..++|. ++
T Consensus 567 ~~~~l~~f~~~~~~~~gavL~av~gGk~sEGIDf~~~~~r~ViivGlPf~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~ 646 (705)
T TIGR00604 567 TSDALERYKQAVSEGRGAVLLSVAGGKVSEGIDFCDDLGRAVIMVGIPYEYTESRILLARLEFLRDQYPIRENQDFYEFD 646 (705)
T ss_pred HHHHHHHHHHHHhcCCceEEEEecCCcccCccccCCCCCcEEEEEccCCCCCCCHHHHHHHHHHHhhcCCCccHHHHHHH
Confidence 5778999964 455699998 88999999996 78899998885 10
Q ss_pred --HHHHHHHhhcccCCCceEEEEec
Q psy16582 45 --RSYVQSKAFTVVRHKAEQILSQY 67 (109)
Q Consensus 45 --~~y~qr~GR~gR~g~~~~~~~~~ 67 (109)
....|.+||+=|......++++.
T Consensus 647 a~~~v~QaiGR~IR~~~D~G~iill 671 (705)
T TIGR00604 647 AMRAVNQAIGRVIRHKDDYGSIVLL 671 (705)
T ss_pred HHHHHHHHhCccccCcCceEEEEEE
Confidence 12268889998876554444444
No 147
>KOG0388|consensus
Probab=95.99 E-value=0.022 Score=47.01 Aligned_cols=61 Identities=13% Similarity=0.109 Sum_probs=53.2
Q ss_pred hHHHHHHHhcCCcc-EEEEcCccccccccCCCCEEEEeCCCCCHHHHHHHHhhcccCCCceE
Q psy16582 2 DVQTMLSFNRGITN-ILVATDVLEEGIDIQSCNLVIKFDPPQHTRSYVQSKAFTVVRHKAEQ 62 (109)
Q Consensus 2 r~~~~~~F~~g~~~-iLV~T~~~~~Gldi~~v~~Vi~~d~p~~~~~y~qr~GR~gR~g~~~~ 62 (109)
|.+.+.+|...++= .|.+|-+.+.||++...+.||.||..|++..=.|..-|+.|.|..-.
T Consensus 1083 Rrd~vrDwQ~sdiFvFLLSTRAGGLGINLTAADTViFYdSDWNPT~D~QAMDRAHRLGQTrd 1144 (1185)
T KOG0388|consen 1083 RRDVVRDWQASDIFVFLLSTRAGGLGINLTAADTVIFYDSDWNPTADQQAMDRAHRLGQTRD 1144 (1185)
T ss_pred HHHHHhhccCCceEEEEEecccCcccccccccceEEEecCCCCcchhhHHHHHHHhccCccc
Confidence 67788888876554 57899999999999999999999999999999999999999986433
No 148
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=95.85 E-value=0.018 Score=48.90 Aligned_cols=45 Identities=27% Similarity=0.211 Sum_probs=36.4
Q ss_pred CCccEEEEcCccccccccCCCCEEEEeCCCCCHHHHHHHHhhcccCCC
Q psy16582 12 GITNILVATDVLEEGIDIQSCNLVIKFDPPQHTRSYVQSKAFTVVRHK 59 (109)
Q Consensus 12 g~~~iLV~T~~~~~Gldi~~v~~Vi~~d~p~~~~~y~qr~GR~gR~g~ 59 (109)
+..-|+|+|.+++-|+|+. .+++|- -|.+..+.+|+.||+.|.+.
T Consensus 837 ~~~~i~v~Tqv~E~g~D~d-fd~~~~--~~~~~~sliQ~aGR~~R~~~ 881 (1110)
T TIGR02562 837 NHLFIVLATPVEEVGRDHD-YDWAIA--DPSSMRSIIQLAGRVNRHRL 881 (1110)
T ss_pred CCCeEEEEeeeEEEEeccc-CCeeee--ccCcHHHHHHHhhccccccc
Confidence 4677999999999999964 555543 36788999999999999764
No 149
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=95.73 E-value=0.01 Score=50.18 Aligned_cols=41 Identities=22% Similarity=0.496 Sum_probs=36.1
Q ss_pred hHHHHHHHhcCCccEEEEc----CccccccccCC-CCEEEEeCCCC
Q psy16582 2 DVQTMLSFNRGITNILVAT----DVLEEGIDIQS-CNLVIKFDPPQ 42 (109)
Q Consensus 2 r~~~~~~F~~g~~~iLV~T----~~~~~Gldi~~-v~~Vi~~d~p~ 42 (109)
.++.+++|..|++++||+. .++-||+|+|+ +.++|-|+.|+
T Consensus 372 ~~~~le~F~~GeidvLVGvAsyYG~lVRGlDLP~rirYaIF~GvPk 417 (1187)
T COG1110 372 KEEALEDFEEGEVDVLVGVASYYGVLVRGLDLPHRIRYAVFYGVPK 417 (1187)
T ss_pred chhhhhhhccCceeEEEEecccccceeecCCchhheeEEEEecCCc
Confidence 3678999999999999875 47889999997 88999999994
No 150
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=95.35 E-value=0.084 Score=44.20 Aligned_cols=27 Identities=7% Similarity=-0.119 Sum_probs=20.7
Q ss_pred HHHHhhcccCCCceEEEEeccCchHHH
Q psy16582 48 VQSKAFTVVRHKAEQILSQYPKSERYL 74 (109)
Q Consensus 48 ~qr~GR~gR~g~~~~~~~~~~~~~~~~ 74 (109)
-|..||+||.|.+|..-++..-++..+
T Consensus 609 nQLrGRaGRQGDPG~s~f~lSLED~l~ 635 (870)
T CHL00122 609 NQLRGRAGRQGDPGSSRFFLSLEDNLL 635 (870)
T ss_pred HHHhccccCCCCCCcceEEEEeccHHH
Confidence 799999999998888766655554444
No 151
>KOG4439|consensus
Probab=95.15 E-value=0.063 Score=44.12 Aligned_cols=63 Identities=14% Similarity=0.115 Sum_probs=53.0
Q ss_pred ChHHHHHHHh--cCCccE-EEEcCccccccccCCCCEEEEeCCCCCHHHHHHHHhhcccCCCceEE
Q psy16582 1 MDVQTMLSFN--RGITNI-LVATDVLEEGIDIQSCNLVIKFDPPQHTRSYVQSKAFTVVRHKAEQI 63 (109)
Q Consensus 1 er~~~~~~F~--~g~~~i-LV~T~~~~~Gldi~~v~~Vi~~d~p~~~~~y~qr~GR~gR~g~~~~~ 63 (109)
+|+++++.|. +|..+| |++-...+-|+++...+|+|..|+-|++.-=.|.+-|.-|.|.+..+
T Consensus 784 ~Rq~iv~~FN~~k~~~rVmLlSLtAGGVGLNL~GaNHlilvDlHWNPaLEqQAcDRIYR~GQkK~V 849 (901)
T KOG4439|consen 784 DRQEIVDEFNQEKGGARVMLLSLTAGGVGLNLIGANHLILVDLHWNPALEQQACDRIYRMGQKKDV 849 (901)
T ss_pred HHHHHHHHHHhccCCceEEEEEEccCcceeeecccceEEEEecccCHHHHHHHHHHHHHhcccCce
Confidence 4789999997 454564 47777888999999999999999999999999999999999965443
No 152
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=95.04 E-value=0.16 Score=41.35 Aligned_cols=68 Identities=19% Similarity=0.084 Sum_probs=49.0
Q ss_pred hHHHHHHHhc----CCccEEEEcCcccccccc--------C--CCCEEEEeCCCCC------------------------
Q psy16582 2 DVQTMLSFNR----GITNILVATDVLEEGIDI--------Q--SCNLVIKFDPPQH------------------------ 43 (109)
Q Consensus 2 r~~~~~~F~~----g~~~iLV~T~~~~~Gldi--------~--~v~~Vi~~d~p~~------------------------ 43 (109)
+.+.+++|+. |.-.||++|+-+-+|+|+ | .+..||..-+|..
T Consensus 507 ~~~l~~~f~~~~~~~~~~vL~gt~sfweGvDv~~~~~~p~~G~~Ls~ViI~kLPF~~~dp~a~~~~~~~~g~~~f~~~p~ 586 (636)
T TIGR03117 507 LASAEQQFLALYANGIQPVLIAAGGAWTGIDLTHKPVSPDKDNLLTDLIITCAPFGLNRSLSMLKRIRKTSVRPWEIINE 586 (636)
T ss_pred HHHHHHHHHHhhcCCCCcEEEeCCccccccccCCccCCCCCCCcccEEEEEeCCCCcCChHHHHHHHHhcCCChHhhhHH
Confidence 3568999997 478899999999999999 2 4889998877732
Q ss_pred -HHHHHHHHhhcccCCC---ceEEEEeccC
Q psy16582 44 -TRSYVQSKAFTVVRHK---AEQILSQYPK 69 (109)
Q Consensus 44 -~~~y~qr~GR~gR~g~---~~~~~~~~~~ 69 (109)
.-.+.|-+||.=|... .|.++++.+.
T Consensus 587 a~i~lkQg~GRLIR~~~D~~~G~i~ilD~R 616 (636)
T TIGR03117 587 SLMMLRQGLGRLVRHPDMPQNRRIHMLDGR 616 (636)
T ss_pred HHHHHHHhcCceeecCCCcCceEEEEEeCC
Confidence 2233677777777553 4555555433
No 153
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=95.03 E-value=0.031 Score=46.38 Aligned_cols=53 Identities=13% Similarity=0.143 Sum_probs=45.4
Q ss_pred HHHHHHhc--CCccEEEEcCccccccccCCCCEEEEeCCCCCHHHHHHHHhhccc
Q psy16582 4 QTMLSFNR--GITNILVATDVLEEGIDIQSCNLVIKFDPPQHTRSYVQSKAFTVV 56 (109)
Q Consensus 4 ~~~~~F~~--g~~~iLV~T~~~~~Gldi~~v~~Vi~~d~p~~~~~y~qr~GR~gR 56 (109)
..++.|.. .-=+|.|+.+++.-|+|+|.|-.++-+-.-.|..-|.|.+||.=|
T Consensus 470 ~~Id~f~~ke~~P~IaitvdlL~TGiDvpev~nlVF~r~VrSktkF~QMvGRGTR 524 (875)
T COG4096 470 ALIDNFIDKEKYPRIAITVDLLTTGVDVPEVVNLVFDRKVRSKTKFKQMVGRGTR 524 (875)
T ss_pred HHHHHHHhcCCCCceEEehhhhhcCCCchheeeeeehhhhhhHHHHHHHhcCccc
Confidence 45666654 233488999999999999999999999999999999999999966
No 154
>KOG1513|consensus
Probab=94.27 E-value=0.053 Score=45.35 Aligned_cols=53 Identities=21% Similarity=0.244 Sum_probs=46.1
Q ss_pred HHHhcCCccEEEEcCccccccccCCCCEE--------EEeCCCCCHHHHHHHHhhcccCCC
Q psy16582 7 LSFNRGITNILVATDVLEEGIDIQSCNLV--------IKFDPPQHTRSYVQSKAFTVVRHK 59 (109)
Q Consensus 7 ~~F~~g~~~iLV~T~~~~~Gldi~~v~~V--------i~~d~p~~~~~y~qr~GR~gR~g~ 59 (109)
++|..|+..|-|-+.+++-||.+.+=+-| |-..+||+...-+|..||+.|.+.
T Consensus 851 qrFM~GeK~vAIISEAaSSGiSLQsDrRv~NqRRRvHiTLELPWSADrAIQQFGRTHRSNQ 911 (1300)
T KOG1513|consen 851 QRFMDGEKLVAIISEAASSGISLQSDRRVQNQRRRVHITLELPWSADRAIQQFGRTHRSNQ 911 (1300)
T ss_pred hhhccccceeeeeehhhccCceeecchhhhhhhheEEEEEECCcchhHHHHHhcccccccc
Confidence 57899999999999999999998865555 448899999999999999999764
No 155
>KOG0391|consensus
Probab=94.09 E-value=0.18 Score=43.89 Aligned_cols=66 Identities=17% Similarity=0.155 Sum_probs=47.6
Q ss_pred hHHHHHHHhcC--CccEEEEcCccccccccCCCCEEEEeCCCCCHHHHHHHHhhcccCC--CceEEEEec
Q psy16582 2 DVQTMLSFNRG--ITNILVATDVLEEGIDIQSCNLVIKFDPPQHTRSYVQSKAFTVVRH--KAEQILSQY 67 (109)
Q Consensus 2 r~~~~~~F~~g--~~~iLV~T~~~~~Gldi~~v~~Vi~~d~p~~~~~y~qr~GR~gR~g--~~~~~~~~~ 67 (109)
|+..+++|... -...+.+|--.+-||++...+.||.||..|++.-=.|..-|+.|.| +..+++.+.
T Consensus 1315 RQaLmerFNaD~RIfcfILSTrSggvGiNLtgADTVvFYDsDwNPtMDaQAQDrChRIGqtRDVHIYRLI 1384 (1958)
T KOG0391|consen 1315 RQALMERFNADRRIFCFILSTRSGGVGINLTGADTVVFYDSDWNPTMDAQAQDRCHRIGQTRDVHIYRLI 1384 (1958)
T ss_pred HHHHHHHhcCCCceEEEEEeccCCccccccccCceEEEecCCCCchhhhHHHHHHHhhcCccceEEEEee
Confidence 67889999754 3446678889999999999999999999998654444333443333 355666664
No 156
>KOG1000|consensus
Probab=94.08 E-value=0.084 Score=41.99 Aligned_cols=63 Identities=8% Similarity=0.090 Sum_probs=51.7
Q ss_pred ChHHHHHHHhc-CCccE-EEEcCccccccccCCCCEEEEeCCCCCHHHHHHHHhhcccCCCceEE
Q psy16582 1 MDVQTMLSFNR-GITNI-LVATDVLEEGIDIQSCNLVIKFDPPQHTRSYVQSKAFTVVRHKAEQI 63 (109)
Q Consensus 1 er~~~~~~F~~-g~~~i-LV~T~~~~~Gldi~~v~~Vi~~d~p~~~~~y~qr~GR~gR~g~~~~~ 63 (109)
+|+...++|.. .++.| +++-.+++.|+++...+.|+-..+++++.-++|.=-|+.|.|.++.+
T Consensus 530 ~R~ll~qsFQ~seev~VAvlsItA~gvGLt~tAa~~VVFaEL~wnPgvLlQAEDRaHRiGQkssV 594 (689)
T KOG1000|consen 530 RRTLLCQSFQTSEEVRVAVLSITAAGVGLTLTAASVVVFAELHWNPGVLLQAEDRAHRIGQKSSV 594 (689)
T ss_pred hHHHHHHHhccccceEEEEEEEeecccceeeeccceEEEEEecCCCceEEechhhhhhcccccee
Confidence 36777888884 45664 46677889999999999999999999999999988888888865554
No 157
>KOG1015|consensus
Probab=93.52 E-value=0.11 Score=44.25 Aligned_cols=60 Identities=22% Similarity=0.133 Sum_probs=51.3
Q ss_pred ChHHHHHHHhcC---Ccc-EEEEcCccccccccCCCCEEEEeCCCCCHHHHHHHHhhcccCCCc
Q psy16582 1 MDVQTMLSFNRG---ITN-ILVATDVLEEGIDIQSCNLVIKFDPPQHTRSYVQSKAFTVVRHKA 60 (109)
Q Consensus 1 er~~~~~~F~~g---~~~-iLV~T~~~~~Gldi~~v~~Vi~~d~p~~~~~y~qr~GR~gR~g~~ 60 (109)
+|+...+.|..- ..+ .||+|-+.+.||++-.++-||.||..|+++-=.|.+=|+-|.|..
T Consensus 1202 ~R~k~~~~FNdp~NlRaRl~LISTRAGsLGiNLvAANRVIIfDasWNPSyDtQSIFRvyRfGQt 1265 (1567)
T KOG1015|consen 1202 SRKKWAEEFNDPTNLRARLFLISTRAGSLGINLVAANRVIIFDASWNPSYDTQSIFRVYRFGQT 1265 (1567)
T ss_pred HHHHHHHHhcCcccceeEEEEEeeccCccccceeecceEEEEecccCCccchHHHHHHHhhcCc
Confidence 366777888753 333 689999999999999999999999999998889999999999954
No 158
>PF10593 Z1: Z1 domain; InterPro: IPR018310 This entry represents the Z1 domain of unknown function that is found in a group of putative endonucleases. This domain is found associated with a helicase domain of superfamily type II [].
Probab=93.24 E-value=0.4 Score=34.35 Aligned_cols=80 Identities=8% Similarity=0.061 Sum_probs=54.5
Q ss_pred ccEEEEcCccccccccCCCCEEEEeCCCCCHHHHHHHHhhcc-cCCCceEE-EEeccCchHHHhhcchHHHHHHHHHhhc
Q psy16582 14 TNILVATDVLEEGIDIQSCNLVIKFDPPQHTRSYVQSKAFTV-VRHKAEQI-LSQYPKSERYLQYNSPKINRLLQLLRRY 91 (109)
Q Consensus 14 ~~iLV~T~~~~~Gldi~~v~~Vi~~d~p~~~~~y~qr~GR~g-R~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (109)
..|+|+=+.++||+.+++........-+.+...+.|+.-.-| |.|=...+ +++.+.-...+.......+.+.+.+.++
T Consensus 136 ~~I~VGGn~LsRGlTleGL~vsYf~R~s~~~DTL~QmgRwFGYR~gY~dl~Ri~~~~~l~~~f~~i~~~~e~lr~~i~~~ 215 (239)
T PF10593_consen 136 NVIAVGGNKLSRGLTLEGLTVSYFLRNSKQYDTLMQMGRWFGYRPGYEDLCRIYMPEELYDWFRHIAEAEEELREEIKEM 215 (239)
T ss_pred eEEEECCccccCceeECCcEEEEecCCCchHHHHHHHhhcccCCcccccceEEecCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 789999999999999999999999999998888888876666 34422223 3333333334444445555555555555
Q ss_pred Cc
Q psy16582 92 NP 93 (109)
Q Consensus 92 ~~ 93 (109)
..
T Consensus 216 ~~ 217 (239)
T PF10593_consen 216 AN 217 (239)
T ss_pred Hh
Confidence 43
No 159
>KOG0386|consensus
Probab=92.82 E-value=0.22 Score=42.42 Aligned_cols=60 Identities=18% Similarity=0.161 Sum_probs=51.8
Q ss_pred ChHHHHHHHhcCCc---cEEEEcCccccccccCCCCEEEEeCCCCCHHHHHHHHhhcccCCCc
Q psy16582 1 MDVQTMLSFNRGIT---NILVATDVLEEGIDIQSCNLVIKFDPPQHTRSYVQSKAFTVVRHKA 60 (109)
Q Consensus 1 er~~~~~~F~~g~~---~iLV~T~~~~~Gldi~~v~~Vi~~d~p~~~~~y~qr~GR~gR~g~~ 60 (109)
||-..++.|..... ..|.+|-..+.|++....+.||.||.-|++....|+.-|+-|-|..
T Consensus 764 eRg~ll~~FN~Pds~yf~FllstragglglNlQtadtviifdsdwnp~~d~qaqdrahrigq~ 826 (1157)
T KOG0386|consen 764 ERGDLLEIFNAPDSPYFIFLLSTRAGGLGLNLQTADTVIIFDSDWNPHQDLQAQDRAHRIGQK 826 (1157)
T ss_pred hHHHHHHHhcCCCCceeeeeeeecccccccchhhcceEEEecCCCCchhHHHHHHHHHHhhch
Confidence 46678888885433 3678999999999999999999999999999999999999998854
No 160
>KOG1002|consensus
Probab=91.95 E-value=0.73 Score=36.99 Aligned_cols=66 Identities=12% Similarity=0.079 Sum_probs=54.6
Q ss_pred hHHHHHHHhcC-CccE-EEEcCccccccccCCCCEEEEeCCCCCHHHHHHHHhhcccCC--CceEEEEec
Q psy16582 2 DVQTMLSFNRG-ITNI-LVATDVLEEGIDIQSCNLVIKFDPPQHTRSYVQSKAFTVVRH--KAEQILSQY 67 (109)
Q Consensus 2 r~~~~~~F~~g-~~~i-LV~T~~~~~Gldi~~v~~Vi~~d~p~~~~~y~qr~GR~gR~g--~~~~~~~~~ 67 (109)
|+.+++.|++. .+.| ||+-.+.+-.+++....+|.++|+=|++.-=.|..-|..|.| ++..++.|+
T Consensus 677 rdatik~F~nd~~c~vfLvSLkAGGVALNLteASqVFmmDPWWNpaVe~Qa~DRiHRIGQ~rPvkvvrf~ 746 (791)
T KOG1002|consen 677 RDATIKYFKNDIDCRVFLVSLKAGGVALNLTEASQVFMMDPWWNPAVEWQAQDRIHRIGQYRPVKVVRFC 746 (791)
T ss_pred HHHHHHHhccCCCeEEEEEEeccCceEeeechhceeEeecccccHHHHhhhhhhHHhhcCccceeEEEee
Confidence 67899999975 6774 588888888899999999999999999998888777877777 466677764
No 161
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ].; GO: 0005634 nucleus
Probab=88.86 E-value=4.9 Score=31.56 Aligned_cols=67 Identities=19% Similarity=0.274 Sum_probs=50.0
Q ss_pred HHHHHHHhcCCccEEEEcCccc--cccccCCCCEEEEeCCCCCHHHHHHHHhhcccCCC------ceEEEEeccC
Q psy16582 3 VQTMLSFNRGITNILVATDVLE--EGIDIQSCNLVIKFDPPQHTRSYVQSKAFTVVRHK------AEQILSQYPK 69 (109)
Q Consensus 3 ~~~~~~F~~g~~~iLV~T~~~~--~Gldi~~v~~Vi~~d~p~~~~~y~qr~GR~gR~g~------~~~~~~~~~~ 69 (109)
.++-..|.+|+.+||+.|.=+- +=..+-+++.||-|.+|.++.=|...++..+.... ...+.+++..
T Consensus 340 sRAR~~F~~G~~~iLL~TER~HFfrRy~irGi~~viFY~~P~~p~fY~El~n~~~~~~~~~~~~~~~~~~~lysk 414 (442)
T PF06862_consen 340 SRARSQFFHGRKPILLYTERFHFFRRYRIRGIRHVIFYGPPENPQFYSELLNMLDESSGGEVDAADATVTVLYSK 414 (442)
T ss_pred HHHHHHHHcCCceEEEEEhHHhhhhhceecCCcEEEEECCCCChhHHHHHHhhhcccccccccccCceEEEEecH
Confidence 3566789999999999997332 44567789999999999999999888877765433 3455555544
No 162
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]
Probab=88.44 E-value=1.1 Score=37.59 Aligned_cols=63 Identities=14% Similarity=0.097 Sum_probs=39.6
Q ss_pred cCCcc-EEEEcCccccccccCCCCE---E------EEeCCCCCHHHH--HHHHhhcccCCCceEEEEeccCchHH
Q psy16582 11 RGITN-ILVATDVLEEGIDIQSCNL---V------IKFDPPQHTRSY--VQSKAFTVVRHKAEQILSQYPKSERY 73 (109)
Q Consensus 11 ~g~~~-iLV~T~~~~~Gldi~~v~~---V------i~~d~p~~~~~y--~qr~GR~gR~g~~~~~~~~~~~~~~~ 73 (109)
.|+.. +-|||++++||-|+.=-.. | .-.+--.+-+.. -|..||+||.|..|..-+++.-++..
T Consensus 474 AG~~gaVTiATNMAGRGTDIkLg~~~~~V~~lGGL~VIgTERhESRRIDnQLRGRsGRQGDpG~S~F~lSleD~L 548 (822)
T COG0653 474 AGQPGAVTIATNMAGRGTDIKLGGNPEFVMELGGLHVIGTERHESRRIDNQLRGRAGRQGDPGSSRFYLSLEDDL 548 (822)
T ss_pred cCCCCccccccccccCCcccccCCCHHHHHHhCCcEEEecccchhhHHHHHhhcccccCCCcchhhhhhhhHHHH
Confidence 45444 6699999999999863332 1 111222333333 38999999999887776665544443
No 163
>KOG1016|consensus
Probab=83.38 E-value=1.4 Score=37.35 Aligned_cols=62 Identities=19% Similarity=0.094 Sum_probs=51.8
Q ss_pred ChHHHHHHHhcC---CccEEEEcCccccccccCCCCEEEEeCCCCCHHHHHHHHhhcccCCCceE
Q psy16582 1 MDVQTMLSFNRG---ITNILVATDVLEEGIDIQSCNLVIKFDPPQHTRSYVQSKAFTVVRHKAEQ 62 (109)
Q Consensus 1 er~~~~~~F~~g---~~~iLV~T~~~~~Gldi~~v~~Vi~~d~p~~~~~y~qr~GR~gR~g~~~~ 62 (109)
+|++.+++|.+- .+-+|++|-...-|+++-+.+-+|.||..|++.-=.|.+-|+-|.|...-
T Consensus 775 ~rekLinqfN~e~~lsWlfllstrag~lGinLIsanr~~ifda~wnpchdaqavcRvyrYGQ~Kp 839 (1387)
T KOG1016|consen 775 DREKLINQFNSEPGLSWLFLLSTRAGSLGINLISANRCIIFDACWNPCHDAQAVCRVYRYGQQKP 839 (1387)
T ss_pred hHHHHHHhccCCCCceeeeeehhccccccceeeccceEEEEEeecCccccchhhhhhhhhcCcCc
Confidence 478899999753 34578999999999999999999999999999888888888888885433
No 164
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=80.20 E-value=3.7 Score=34.56 Aligned_cols=55 Identities=11% Similarity=0.056 Sum_probs=40.2
Q ss_pred CCccEEEEcCccccccccCCCC--EEEEe--CCC--CCHHHHHHHHhhcccCCCceEEEEe
Q psy16582 12 GITNILVATDVLEEGIDIQSCN--LVIKF--DPP--QHTRSYVQSKAFTVVRHKAEQILSQ 66 (109)
Q Consensus 12 g~~~iLV~T~~~~~Gldi~~v~--~Vi~~--d~p--~~~~~y~qr~GR~gR~g~~~~~~~~ 66 (109)
++++|+|=|+++.-|+++.+.. -|.-| ... .+..+..|.+||+.........+.+
T Consensus 325 ~~~~VviYT~~itvG~Sf~~~HF~~~f~yvk~~~~gpd~~s~~Q~lgRvR~l~~~ei~v~~ 385 (824)
T PF02399_consen 325 KKYDVVIYTPVITVGLSFEEKHFDSMFAYVKPMSYGPDMVSVYQMLGRVRSLLDNEIYVYI 385 (824)
T ss_pred cceeEEEEeceEEEEeccchhhceEEEEEecCCCCCCcHHHHHHHHHHHHhhccCeEEEEE
Confidence 5689999999999999998653 34333 222 4566789999999887666555554
No 165
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=80.20 E-value=1.9 Score=36.68 Aligned_cols=37 Identities=8% Similarity=0.030 Sum_probs=24.2
Q ss_pred HHHHhhcccCCCceEEEEeccCchHHH-hhcchHHHHH
Q psy16582 48 VQSKAFTVVRHKAEQILSQYPKSERYL-QYNSPKINRL 84 (109)
Q Consensus 48 ~qr~GR~gR~g~~~~~~~~~~~~~~~~-~~~~~~~~~~ 84 (109)
-|..||+||.|.+|..-++..-++..+ .+-...+..+
T Consensus 666 NQLRGRaGRQGDPGsSrFflSLEDdL~r~Fg~dri~~~ 703 (939)
T PRK12902 666 NQLRGRAGRQGDPGSTRFFLSLEDNLLRIFGGDRVAGL 703 (939)
T ss_pred HHhhcccccCCCCCcceEEEEechHHHHHhCcHHHHHH
Confidence 799999999998888776655444444 3333333333
No 166
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=79.16 E-value=2.2 Score=37.09 Aligned_cols=37 Identities=16% Similarity=0.371 Sum_probs=33.5
Q ss_pred ChHHHHHHHhcCCccEEEEcC-ccccccccCCCCEEEE
Q psy16582 1 MDVQTMLSFNRGITNILVATD-VLEEGIDIQSCNLVIK 37 (109)
Q Consensus 1 er~~~~~~F~~g~~~iLV~T~-~~~~Gldi~~v~~Vi~ 37 (109)
|+.++++..++|+++|+|+|= +++.++-+.+..++|.
T Consensus 685 E~~~il~~la~G~vDIvIGTHrLL~kdv~FkdLGLlII 722 (1139)
T COG1197 685 EQKEILKGLAEGKVDIVIGTHRLLSKDVKFKDLGLLII 722 (1139)
T ss_pred HHHHHHHHHhcCCccEEEechHhhCCCcEEecCCeEEE
Confidence 578999999999999999997 7888999999999875
No 167
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=76.28 E-value=7.5 Score=33.38 Aligned_cols=64 Identities=20% Similarity=0.235 Sum_probs=47.5
Q ss_pred HHHHHH--hcCCccEEEEcCccccccccCCCCEEEEeCCCCCHHHHHHHHhhcccCC----CceEEEEecc
Q psy16582 4 QTMLSF--NRGITNILVATDVLEEGIDIQSCNLVIKFDPPQHTRSYVQSKAFTVVRH----KAEQILSQYP 68 (109)
Q Consensus 4 ~~~~~F--~~g~~~iLV~T~~~~~Gldi~~v~~Vi~~d~p~~~~~y~qr~GR~gR~g----~~~~~~~~~~ 68 (109)
.....| +....++||.+|.+--|.|-|.++.+. .|=|.-.-.++|.+.|+-|.- ..|.++.+..
T Consensus 582 ~~~~r~~~~~d~~kilIV~dmlLTGFDaP~L~TmY-vDK~Lk~H~L~QAisRtNR~~~~~K~~G~IVDf~g 651 (962)
T COG0610 582 DLIKRFKLKDDPLDLLIVVDMLLTGFDAPCLNTLY-VDKPLKYHNLIQAISRTNRVFPGKKKFGLIVDFRG 651 (962)
T ss_pred hhhhhhcCcCCCCCEEEEEccccccCCccccceEE-eccccccchHHHHHHHhccCCCCCCCCcEEEECcc
Confidence 344453 456899999999999999999987654 456666678999999999943 2455666544
No 168
>KOG0298|consensus
Probab=74.79 E-value=2.7 Score=37.00 Aligned_cols=55 Identities=11% Similarity=0.171 Sum_probs=46.8
Q ss_pred HHHHHHhcCCcc-EEEEcCccccccccCCCCEEEEeCCCCCHHHHHHHHhhcccCCCc
Q psy16582 4 QTMLSFNRGITN-ILVATDVLEEGIDIQSCNLVIKFDPPQHTRSYVQSKAFTVVRHKA 60 (109)
Q Consensus 4 ~~~~~F~~g~~~-iLV~T~~~~~Gldi~~v~~Vi~~d~p~~~~~y~qr~GR~gR~g~~ 60 (109)
+.+..|++ ++ +|+-+...+-|++.-+..+|+..++-.++..=.|.+||+-|.|+.
T Consensus 1259 dc~~~fk~--I~clll~~~~~~~GLNL~eA~Hvfl~ePiLN~~~E~QAigRvhRiGQ~ 1314 (1394)
T KOG0298|consen 1259 DCIICFKS--IDCLLLFVSKGSKGLNLIEATHVFLVEPILNPGDEAQAIGRVHRIGQK 1314 (1394)
T ss_pred hhhhhccc--ceEEEEEeccCcccccHHhhhhhheeccccCchHHHhhhhhhhhcccc
Confidence 34555665 55 458888889999999999999999999999999999999999864
No 169
>PF10657 RC-P840_PscD: Photosystem P840 reaction centre protein PscD; InterPro: IPR019608 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. The photosynthetic reaction centres (RCs) of aerotolerant organisms contain a heterodimeric core, built up of two strongly homologous polypeptides each of which contributes five transmembrane peptide helices to hold a pseudo-symmetric double set of redox components. Two molecules of PscD are housed within a subunit. PscD may be involved in stabilising the PscB component since it is found to co-precipitate with FMO (Fenna-Mathews-Olson BChl a-protein) and PscB. It may also be involved in the interaction with ferredoxin [].
Probab=73.43 E-value=6.9 Score=25.50 Aligned_cols=37 Identities=24% Similarity=0.337 Sum_probs=31.5
Q ss_pred HHHHHHHhcCCccEEEEcCccccccccCC------CCEEEEeC
Q psy16582 3 VQTMLSFNRGITNILVATDVLEEGIDIQS------CNLVIKFD 39 (109)
Q Consensus 3 ~~~~~~F~~g~~~iLV~T~~~~~Gldi~~------v~~Vi~~d 39 (109)
.+.+++..+|++.+.|-|.--.-|||++. =++||.||
T Consensus 64 ~emi~~l~~geIel~VLttqpDIai~l~~kVldnEnRYViDFD 106 (144)
T PF10657_consen 64 PEMIDKLISGEIELFVLTTQPDIAINLQQKVLDNENRYVIDFD 106 (144)
T ss_pred HHHHHHHhcCceEEEEEccCCCeeechhhhhhcccceEEEecc
Confidence 57889999999999999998888888874 35799998
No 170
>KOG0921|consensus
Probab=73.04 E-value=1.6 Score=37.33 Aligned_cols=58 Identities=19% Similarity=0.206 Sum_probs=43.0
Q ss_pred HHHHHHHhcCCccEEEEcCccccccccCCCCEEEEeCCC------------------CCHHHHHHHHhhcccCCCc
Q psy16582 3 VQTMLSFNRGITNILVATDVLEEGIDIQSCNLVIKFDPP------------------QHTRSYVQSKAFTVVRHKA 60 (109)
Q Consensus 3 ~~~~~~F~~g~~~iLV~T~~~~~Gldi~~v~~Vi~~d~p------------------~~~~~y~qr~GR~gR~g~~ 60 (109)
.++++.-..|..+++++|.+++-.+.+.++..||..+.- .+..+..||.||+||.-.+
T Consensus 690 rkvf~~~p~gv~kii~stniaetsiTidd~v~vid~cka~~~~~~s~nn~~~~Atvw~sktn~eqr~gr~grvR~G 765 (1282)
T KOG0921|consen 690 RKVFEPVPEGVTKIILSTNIAETSITIDDVVYVIDSCKAKEKLFTSHNNMTHYATVWASKTNLEQRKGRAGRVRPG 765 (1282)
T ss_pred hhccCcccccccccccccceeeEeeeecceeEEEeeeeeeeeeeccccceeeeeeecccccchHhhcccCceeccc
Confidence 344444456889999999999999999998877764322 2466779999999986443
No 171
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=70.51 E-value=4.3 Score=33.30 Aligned_cols=36 Identities=17% Similarity=0.423 Sum_probs=29.6
Q ss_pred hHHHHHHHhcCCccEEEEcC-ccccccccCCCCEEEE
Q psy16582 2 DVQTMLSFNRGITNILVATD-VLEEGIDIQSCNLVIK 37 (109)
Q Consensus 2 r~~~~~~F~~g~~~iLV~T~-~~~~Gldi~~v~~Vi~ 37 (109)
+.+++++..+|+.+|+|+|. .+...+.+.++++||.
T Consensus 353 r~~~~~~l~~g~~~IvVgT~~ll~~~v~~~~l~lvVI 389 (681)
T PRK10917 353 RREILEAIASGEADIVIGTHALIQDDVEFHNLGLVII 389 (681)
T ss_pred HHHHHHHHhCCCCCEEEchHHHhcccchhcccceEEE
Confidence 56788889999999999997 4455677889998875
No 172
>KOG0701|consensus
Probab=69.72 E-value=1.3 Score=39.67 Aligned_cols=54 Identities=22% Similarity=0.096 Sum_probs=48.3
Q ss_pred HHHHHHHhcCCccEEEEcCccccccccCCCCEEEEeCCCCCHHHHHHHHhhccc
Q psy16582 3 VQTMLSFNRGITNILVATDVLEEGIDIQSCNLVIKFDPPQHTRSYVQSKAFTVV 56 (109)
Q Consensus 3 ~~~~~~F~~g~~~iLV~T~~~~~Gldi~~v~~Vi~~d~p~~~~~y~qr~GR~gR 56 (109)
.....+|.-+.+..+++|.....|.|+-.+..|+.++.-.+..+++|..|++.-
T Consensus 711 n~~~~~~~~~~v~~~~~pss~~~g~~~~~~~~v~~~~~~~~i~~~~q~~~~~~~ 764 (1606)
T KOG0701|consen 711 NDDQPQFYVAEVLPLLAPSSLFPGLDYETFNEVYRFKYALTITSLNQSLLDVDH 764 (1606)
T ss_pred cccccceeeeeeeeeccchhcCCCcchheeeeeeeccccchhhhcccccccccc
Confidence 344556778899999999999999999999999999999999999999999854
No 173
>COG3587 Restriction endonuclease [Defense mechanisms]
Probab=68.41 E-value=24 Score=30.33 Aligned_cols=45 Identities=16% Similarity=0.074 Sum_probs=41.7
Q ss_pred CCccEEEEcCccccccccCCCCEEEEeCCCCCHHHHHHHHhhccc
Q psy16582 12 GITNILVATDVLEEGIDIQSCNLVIKFDPPQHTRSYVQSKAFTVV 56 (109)
Q Consensus 12 g~~~iLV~T~~~~~Gldi~~v~~Vi~~d~p~~~~~y~qr~GR~gR 56 (109)
...+.+.+-+++-+|-|-|+|=.++-.....|..+=.|.+||.-|
T Consensus 482 ~plRFIFS~waLrEGWDNPNVFtIckL~~S~SeiSK~QeVGRGLR 526 (985)
T COG3587 482 EPLRFIFSKWALREGWDNPNVFTICKLRSSGSEISKLQEVGRGLR 526 (985)
T ss_pred CcceeeeehhHHhhcCCCCCeeEEEEecCCCcchHHHHHhcccee
Confidence 357788999999999999999999999999999999999999988
No 174
>PF11576 DUF3236: Protein of unknown function (DUF3236); InterPro: IPR012019 This family of proteins with unknown function appears to be restricted to Methanobacteria. ; PDB: 3BRC_B.
Probab=67.98 E-value=4.6 Score=26.96 Aligned_cols=50 Identities=20% Similarity=0.253 Sum_probs=26.5
Q ss_pred HHHHHHhcCCccEE-EEcCccc-----------cccccCCCCEEEEeCCCCCHHHHHHHHhhcccCCCceEEEEe
Q psy16582 4 QTMLSFNRGITNIL-VATDVLE-----------EGIDIQSCNLVIKFDPPQHTRSYVQSKAFTVVRHKAEQILSQ 66 (109)
Q Consensus 4 ~~~~~F~~g~~~iL-V~T~~~~-----------~Gldi~~v~~Vi~~d~p~~~~~y~qr~GR~gR~g~~~~~~~~ 66 (109)
+++..|-..++..| |.|+.+. .++|+.++++||-- ||-|-.|+++..+.+
T Consensus 53 ~il~~~~~~~i~~l~i~Tn~aDlTrmPA~~K~LmavD~~dADlvIAR-------------GRLGvPGSGSmlvim 114 (154)
T PF11576_consen 53 DILSKFNLPEIEMLDIPTNSADLTRMPALSKALMAVDISDADLVIAR-------------GRLGVPGSGSMLVIM 114 (154)
T ss_dssp HHHHHTT----EE--S--GGGGGSSSHHHHHHHHHHHHH--SEEEEE-------------EE-SSTTS-EEEEEE
T ss_pred HHHHHhcCCccceeeccCcchhcccCcHHHhHHHheeccCCcEEEEc-------------ccccCCCCccEEEEE
Confidence 45556655555555 6776654 47888888888864 788888877665554
No 175
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=67.96 E-value=6.6 Score=32.40 Aligned_cols=37 Identities=19% Similarity=0.375 Sum_probs=32.2
Q ss_pred ChHHHHHHHhcCCccEEEEcCc-cccccccCCCCEEEE
Q psy16582 1 MDVQTMLSFNRGITNILVATDV-LEEGIDIQSCNLVIK 37 (109)
Q Consensus 1 er~~~~~~F~~g~~~iLV~T~~-~~~Gldi~~v~~Vi~ 37 (109)
+|++++++..+|+++++|+|-+ +...+++.+..+||.
T Consensus 353 ~r~~~l~~l~~G~~~ivVGTHALiQd~V~F~~LgLVIi 390 (677)
T COG1200 353 ARKEILEQLASGEIDIVVGTHALIQDKVEFHNLGLVII 390 (677)
T ss_pred HHHHHHHHHhCCCCCEEEEcchhhhcceeecceeEEEE
Confidence 4789999999999999999984 567889999988875
No 176
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=66.88 E-value=4.6 Score=35.00 Aligned_cols=20 Identities=20% Similarity=0.333 Sum_probs=10.0
Q ss_pred hHHHHHHHhcCCccEEEEcC
Q psy16582 2 DVQTMLSFNRGITNILVATD 21 (109)
Q Consensus 2 r~~~~~~F~~g~~~iLV~T~ 21 (109)
+++++++|.+|..+|||+|+
T Consensus 170 kee~le~i~~gdfdIlitTs 189 (1187)
T COG1110 170 KEEALERIESGDFDILITTS 189 (1187)
T ss_pred HHHHHHHHhcCCccEEEEeH
Confidence 34455555555555555444
No 177
>COG4019 Uncharacterized protein conserved in archaea [Function unknown]
Probab=64.47 E-value=9.8 Score=25.05 Aligned_cols=29 Identities=21% Similarity=0.188 Sum_probs=22.4
Q ss_pred cccccCCCCEEEEeCCCCCHHHHHHHHhhcccCCCceEEEEe
Q psy16582 25 EGIDIQSCNLVIKFDPPQHTRSYVQSKAFTVVRHKAEQILSQ 66 (109)
Q Consensus 25 ~Gldi~~v~~Vi~~d~p~~~~~y~qr~GR~gR~g~~~~~~~~ 66 (109)
.|+|+.+.++||-- ||.|-.|+++..+++
T Consensus 87 maldis~ADlvIAR-------------GRLGvPGSGsmlVim 115 (156)
T COG4019 87 MALDISKADLVIAR-------------GRLGVPGSGSMLVIM 115 (156)
T ss_pred HhccccCCcEEEee-------------ccccCCCCCcEEEEE
Confidence 58899888888864 788888877666654
No 178
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=63.90 E-value=6 Score=33.85 Aligned_cols=36 Identities=19% Similarity=0.416 Sum_probs=29.3
Q ss_pred hHHHHHHHhcCCccEEEEcC-ccccccccCCCCEEEE
Q psy16582 2 DVQTMLSFNRGITNILVATD-VLEEGIDIQSCNLVIK 37 (109)
Q Consensus 2 r~~~~~~F~~g~~~iLV~T~-~~~~Gldi~~v~~Vi~ 37 (109)
+.++++++++|+++|+|+|. ++...+.+.++.+||.
T Consensus 543 ~~~~~~~l~~g~~dIVIGTp~ll~~~v~f~~L~llVI 579 (926)
T TIGR00580 543 QNEILKELASGKIDILIGTHKLLQKDVKFKDLGLLII 579 (926)
T ss_pred HHHHHHHHHcCCceEEEchHHHhhCCCCcccCCEEEe
Confidence 56778888999999999998 4455678889998775
No 179
>PRK10689 transcription-repair coupling factor; Provisional
Probab=62.44 E-value=6.4 Score=34.45 Aligned_cols=36 Identities=22% Similarity=0.388 Sum_probs=28.0
Q ss_pred hHHHHHHHhcCCccEEEEcC-ccccccccCCCCEEEE
Q psy16582 2 DVQTMLSFNRGITNILVATD-VLEEGIDIQSCNLVIK 37 (109)
Q Consensus 2 r~~~~~~F~~g~~~iLV~T~-~~~~Gldi~~v~~Vi~ 37 (109)
+.++++.+++|..+|+|+|. .+...+.+.+++++|.
T Consensus 692 ~~~il~~l~~g~~dIVVgTp~lL~~~v~~~~L~lLVI 728 (1147)
T PRK10689 692 QTQILAEAAEGKIDILIGTHKLLQSDVKWKDLGLLIV 728 (1147)
T ss_pred HHHHHHHHHhCCCCEEEECHHHHhCCCCHhhCCEEEE
Confidence 55677888889999999996 4445667778888775
No 180
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional
Probab=61.11 E-value=10 Score=32.74 Aligned_cols=44 Identities=18% Similarity=0.130 Sum_probs=41.4
Q ss_pred CccEEEEcCccccccccCCCCEEEEeCCCCCHHHHHHHHhhccc
Q psy16582 13 ITNILVATDVLEEGIDIQSCNLVIKFDPPQHTRSYVQSKAFTVV 56 (109)
Q Consensus 13 ~~~iLV~T~~~~~Gldi~~v~~Vi~~d~p~~~~~y~qr~GR~gR 56 (109)
..+.+++-+++.+|-|-|++-.+.-+.-..|...-.|.+||.-|
T Consensus 501 ~~~fifs~~al~egwd~~~~~~~~~l~~~~s~~~~~q~~gr~lr 544 (986)
T PRK15483 501 TRRFLFSKWTLREGWDNPNVFQIAKLRSSGSETSKLQEVGRGLR 544 (986)
T ss_pred CeEEEEEhHHhhhcCCCCCeEEEEEeccCCchHHHHHHhcccee
Confidence 67899999999999999999999999989999999999999988
No 181
>KOG1133|consensus
Probab=60.31 E-value=51 Score=27.82 Aligned_cols=66 Identities=23% Similarity=0.265 Sum_probs=45.3
Q ss_pred HHHHHHh----cCCccEE--EEcCccccccccCC--CCEEEEeCCCCC--------------------------------
Q psy16582 4 QTMLSFN----RGITNIL--VATDVLEEGIDIQS--CNLVIKFDPPQH-------------------------------- 43 (109)
Q Consensus 4 ~~~~~F~----~g~~~iL--V~T~~~~~Gldi~~--v~~Vi~~d~p~~-------------------------------- 43 (109)
++++.+. .|.--|| |.-.-+++||++.+ ++.||..++|.-
T Consensus 674 dvl~~Ya~a~~~g~GaiLlaVVGGKlSEGINF~D~LgRaVvvVGlPyPN~~s~EL~er~k~l~~k~~~~gagke~yEnlC 753 (821)
T KOG1133|consen 674 DVLEGYAEAAERGRGAILLAVVGGKLSEGINFSDDLGRAVVVVGLPYPNIQSVELQERMKHLDGKLPTPGAGKELYENLC 753 (821)
T ss_pred HHHHHHHHHhhcCCCeEEEEEeccccccccccccccccEEEEeecCCCCCCCHHHHHHHHHhhhccCCCCchHHHHHHHH
Confidence 4455554 3443444 55567889999997 889999988832
Q ss_pred HHHHHHHHhhcccCCCceEEEEeccC
Q psy16582 44 TRSYVQSKAFTVVRHKAEQILSQYPK 69 (109)
Q Consensus 44 ~~~y~qr~GR~gR~g~~~~~~~~~~~ 69 (109)
+..--|.+|||=|--+..+.+.+.+.
T Consensus 754 MkAVNQsIGRAIRH~~DYA~i~LlD~ 779 (821)
T KOG1133|consen 754 MKAVNQSIGRAIRHRKDYASIYLLDK 779 (821)
T ss_pred HHHHHHHHHHHHhhhccceeEEEehh
Confidence 12226899999987778777776543
No 182
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=59.58 E-value=9 Score=31.13 Aligned_cols=36 Identities=22% Similarity=0.340 Sum_probs=28.3
Q ss_pred hHHHHHHHhcCCccEEEEcCccc-cccccCCCCEEEE
Q psy16582 2 DVQTMLSFNRGITNILVATDVLE-EGIDIQSCNLVIK 37 (109)
Q Consensus 2 r~~~~~~F~~g~~~iLV~T~~~~-~Gldi~~v~~Vi~ 37 (109)
+.+.++...+|+.+|+|+|..+- ..+.+.++.+||.
T Consensus 327 r~~~~~~i~~g~~~IiVgT~~ll~~~~~~~~l~lvVI 363 (630)
T TIGR00643 327 RKELLETIASGQIHLVVGTHALIQEKVEFKRLALVII 363 (630)
T ss_pred HHHHHHHHhCCCCCEEEecHHHHhccccccccceEEE
Confidence 45678888999999999998443 4567788888875
No 183
>COG1182 AcpD Acyl carrier protein phosphodiesterase [Lipid metabolism]
Probab=57.49 E-value=17 Score=25.56 Aligned_cols=39 Identities=15% Similarity=0.331 Sum_probs=28.7
Q ss_pred HHHHHHhcCCccEEEEcCccccccccCCCCEEEEeCCCCCHHHHHHHHhhccc
Q psy16582 4 QTMLSFNRGITNILVATDVLEEGIDIQSCNLVIKFDPPQHTRSYVQSKAFTVV 56 (109)
Q Consensus 4 ~~~~~F~~g~~~iLV~T~~~~~Gldi~~v~~Vi~~d~p~~~~~y~qr~GR~gR 56 (109)
+.+++|.+-+ .+++++++ .||++|....+|+-.+-|+|.
T Consensus 80 ~l~~ef~aAD-~vVi~~PM-------------~Nf~iPa~LK~yiD~i~~aGk 118 (202)
T COG1182 80 KLLEEFLAAD-KVVIAAPM-------------YNFNIPAQLKAYIDHIAVAGK 118 (202)
T ss_pred HHHHHHHhcC-eEEEEecc-------------cccCCCHHHHHHHHHHhcCCc
Confidence 4556666543 35566655 689999999999999988876
No 184
>PHA03371 circ protein; Provisional
Probab=55.98 E-value=8.4 Score=27.67 Aligned_cols=78 Identities=13% Similarity=0.113 Sum_probs=45.5
Q ss_pred ccccccccCCCCEE-EEeCCCC-------------CHHHHHHHHhhcccCCCceEEEEeccCchHHHhh-----cchHHH
Q psy16582 22 VLEEGIDIQSCNLV-IKFDPPQ-------------HTRSYVQSKAFTVVRHKAEQILSQYPKSERYLQY-----NSPKIN 82 (109)
Q Consensus 22 ~~~~Gldi~~v~~V-i~~d~p~-------------~~~~y~qr~GR~gR~g~~~~~~~~~~~~~~~~~~-----~~~~~~ 82 (109)
+++|-+|+|+=+-+ |--|.+. +-..|+|.+|||--.|..-.++.+...+-..+.+ +.--..
T Consensus 29 LaGR~vDLPgGde~~If~~~g~T~~~~g~f~~~g~~r~~~v~fIGRAya~g~~RkF~iyl~r~~sVyGYE~gtGLH~LA~ 108 (240)
T PHA03371 29 LAGRTVDLPGGDELRIFADCGTTTVNFGKFVRPGSSRLAYVKFIGRAYAIGSGRKFVIYLSRNGSVYGYENGTGLHFLAK 108 (240)
T ss_pred hcCcceecCCCCeEEEeccCCCCccceeeEecCCCCcceeeeeeehhhccCCCceEEEEEccCCeEEeecCCcchhhhHH
Confidence 45678899987766 5333332 5567799999998777554444443333222211 112234
Q ss_pred HHHHHHhhcCcccHHHH
Q psy16582 83 RLLQLLRRYNPDQRTII 99 (109)
Q Consensus 83 ~~~~~~~~~~~~~r~~~ 99 (109)
.+-+.|......+|+++
T Consensus 109 sLhdFL~~~GLSqRDl~ 125 (240)
T PHA03371 109 SLHDFLTTKGLSQRDLM 125 (240)
T ss_pred HHHHHHHhcCccccceE
Confidence 55666777777666643
No 185
>PF14824 Sirohm_synth_M: Sirohaem biosynthesis protein central; PDB: 1KYQ_B.
Probab=55.25 E-value=8.6 Score=18.71 Aligned_cols=13 Identities=31% Similarity=0.432 Sum_probs=9.2
Q ss_pred hcCCccEEEEcCc
Q psy16582 10 NRGITNILVATDV 22 (109)
Q Consensus 10 ~~g~~~iLV~T~~ 22 (109)
+.|..+|.|+|+=
T Consensus 1 r~g~LqI~ISTnG 13 (30)
T PF14824_consen 1 RRGPLQIAISTNG 13 (30)
T ss_dssp --TTEEEEEEESS
T ss_pred CCCCeEEEEECCC
Confidence 4678889999874
No 186
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=50.51 E-value=9.4 Score=33.53 Aligned_cols=31 Identities=16% Similarity=0.140 Sum_probs=21.5
Q ss_pred CCHHHHHHHHhhcccC--C--CceEEEEeccCchH
Q psy16582 42 QHTRSYVQSKAFTVVR--H--KAEQILSQYPKSER 72 (109)
Q Consensus 42 ~~~~~y~qr~GR~gR~--g--~~~~~~~~~~~~~~ 72 (109)
.+...|+|..||+.|. | .+|..+++.++.+.
T Consensus 515 pd~~tyiqasgrtsr~~~g~~t~gls~~~~~~~~~ 549 (1171)
T TIGR01054 515 PDARTYIQASGRTSRLYAGGLTKGLSIVLVDDPEA 549 (1171)
T ss_pred cCccceeEccChhhhcccCCcCCceEEEEecCHHH
Confidence 4566899999999993 2 35666666655443
No 187
>PRK09401 reverse gyrase; Reviewed
Probab=48.19 E-value=10 Score=33.34 Aligned_cols=31 Identities=10% Similarity=0.005 Sum_probs=21.5
Q ss_pred CCHHHHHHHHhhcccCC----CceEEEEeccCchH
Q psy16582 42 QHTRSYVQSKAFTVVRH----KAEQILSQYPKSER 72 (109)
Q Consensus 42 ~~~~~y~qr~GR~gR~g----~~~~~~~~~~~~~~ 72 (109)
.+...|+|..||+.|.- ..|..+.+.+++..
T Consensus 517 pd~~tYiqasGRtSrl~~gg~t~glsv~l~dd~~~ 551 (1176)
T PRK09401 517 PDVTTYIQASGRTSRLYAGGLTKGLSVLLVDDEKL 551 (1176)
T ss_pred cCcchheecccchhcccCCCccceeEEEEecCHHH
Confidence 35668999999999943 35666666655443
No 188
>KOG1001|consensus
Probab=45.04 E-value=2.2 Score=35.15 Aligned_cols=62 Identities=11% Similarity=0.155 Sum_probs=50.0
Q ss_pred hHHHHHHHhcC-CccE-EEEcCccccccccCCCCEEEEeCCCCCHHHHHHHHhhcccCCCceEE
Q psy16582 2 DVQTMLSFNRG-ITNI-LVATDVLEEGIDIQSCNLVIKFDPPQHTRSYVQSKAFTVVRHKAEQI 63 (109)
Q Consensus 2 r~~~~~~F~~g-~~~i-LV~T~~~~~Gldi~~v~~Vi~~d~p~~~~~y~qr~GR~gR~g~~~~~ 63 (109)
|.+.+..|..+ ..++ |++..+..-|+++....+|+..|+=+++..--|.+-|+.|-|....+
T Consensus 578 r~~s~~~~~~~~~~~vll~Slkag~~glnlt~a~~v~~~d~~wnp~~eeQaidR~hrigq~k~v 641 (674)
T KOG1001|consen 578 RTKSFTDFPCDPLVTALLMSLKAGKVGLNLTAASHVLLMDPWWNPAVEEQAIDRAHRIGQTKPV 641 (674)
T ss_pred HHhhhcccccCccHHHHHHHHHHhhhhhchhhhhHHHhhchhcChHHHHHHHHHHHHhccccee
Confidence 55666777643 3344 47888888999999999999999999999999999999998864443
No 189
>KOG0327|consensus
Probab=44.84 E-value=99 Score=24.09 Aligned_cols=91 Identities=3% Similarity=-0.074 Sum_probs=62.6
Q ss_pred hcCCccEEEEcCccccccccCCCCEEEEeCCCCCHHHHHHHHhhcccCCCceEEEEeccCchHHHhhcchHHHHHHHHHh
Q psy16582 10 NRGITNILVATDVLEEGIDIQSCNLVIKFDPPQHTRSYVQSKAFTVVRHKAEQILSQYPKSERYLQYNSPKINRLLQLLR 89 (109)
Q Consensus 10 ~~g~~~iLV~T~~~~~Gldi~~v~~Vi~~d~p~~~~~y~qr~GR~gR~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (109)
+...+++..|+.-+..+.|-..+.-+.++-...++..+.+.+.|- ..+..+.-++..++.++++..- ..+.....++
T Consensus 119 ~~~~~~v~~~igg~~~~~~~~~i~~~~~hivvGTpgrV~dml~~~-~l~~~~iKmfvlDEaDEmLs~g--fkdqI~~if~ 195 (397)
T KOG0327|consen 119 DHMDVSVHACIGGTNVRREDQALLKDKPHIVVGTPGRVFDMLNRG-SLSTDGIKMFVLDEADEMLSRG--FKDQIYDIFQ 195 (397)
T ss_pred cccceeeeeecCcccchhhhhhhhccCceeecCCchhHHHhhccc-cccccceeEEeecchHhhhccc--hHHHHHHHHH
Confidence 456777888888777777777777777787888888888888776 5566666666666655554433 3455666666
Q ss_pred hcCcccHHHHhhcc
Q psy16582 90 RYNPDQRTIIFCQR 103 (109)
Q Consensus 90 ~~~~~~r~~~~~~~ 103 (109)
......+.++..++
T Consensus 196 ~lp~~vQv~l~SAT 209 (397)
T KOG0327|consen 196 ELPSDVQVVLLSAT 209 (397)
T ss_pred HcCcchhheeeccc
Confidence 77776667666644
No 190
>KOG1131|consensus
Probab=43.91 E-value=1.2e+02 Score=24.99 Aligned_cols=33 Identities=33% Similarity=0.385 Sum_probs=26.2
Q ss_pred cCCccEE--EEcCccccccccCCCC--EEEEeCCCCC
Q psy16582 11 RGITNIL--VATDVLEEGIDIQSCN--LVIKFDPPQH 43 (109)
Q Consensus 11 ~g~~~iL--V~T~~~~~Gldi~~v~--~Vi~~d~p~~ 43 (109)
+|.--|| |+-.-.++|+|+.+-. .||++.+|..
T Consensus 588 ~gRGavl~sVargkVsEgidF~hhyGR~ViM~gIP~q 624 (755)
T KOG1131|consen 588 NGRGAVLLSVARGKVSEGIDFDHHYGREVIMEGIPYQ 624 (755)
T ss_pred CCCCceEEEEecCccccCcccccccCceEEEEeccch
Confidence 4544454 7888889999999876 8999999964
No 191
>cd01294 DHOase Dihydroorotase (DHOase) catalyzes the reversible interconversion of carbamoyl aspartate to dihydroorotate, a key reaction in the pyrimidine biosynthesis. In contrast to the large polyfunctional CAD proteins of higher organisms, this group of DHOases is monofunctional and mainly dimeric.
Probab=42.01 E-value=23 Score=26.14 Aligned_cols=25 Identities=8% Similarity=0.044 Sum_probs=21.3
Q ss_pred ChHHHHHHHhcCCccEEEEcCcccc
Q psy16582 1 MDVQTMLSFNRGITNILVATDVLEE 25 (109)
Q Consensus 1 er~~~~~~F~~g~~~iLV~T~~~~~ 25 (109)
+|+..++.+++|.++++|+||-+.-
T Consensus 222 d~~~L~~~l~~G~id~~i~SDHaP~ 246 (335)
T cd01294 222 DREALRKAATSGHPKFFLGSDSAPH 246 (335)
T ss_pred HHHHHHHHHHcCCCCeEEECCCCCC
Confidence 3678899999999999999998654
No 192
>PRK05580 primosome assembly protein PriA; Validated
Probab=40.94 E-value=43 Score=27.68 Aligned_cols=37 Identities=11% Similarity=0.167 Sum_probs=27.8
Q ss_pred hHHHHHHHhcCCccEEEEcCccccccccCCCCEEEEeC
Q psy16582 2 DVQTMLSFNRGITNILVATDVLEEGIDIQSCNLVIKFD 39 (109)
Q Consensus 2 r~~~~~~F~~g~~~iLV~T~~~~~Gldi~~v~~Vi~~d 39 (109)
|.+.+.+..+|+.+|+|+|.-+. -+.+.++.+||..+
T Consensus 230 r~~~~~~~~~g~~~IVVgTrsal-~~p~~~l~liVvDE 266 (679)
T PRK05580 230 RLDEWRKAKRGEAKVVIGARSAL-FLPFKNLGLIIVDE 266 (679)
T ss_pred HHHHHHHHHcCCCCEEEeccHHh-cccccCCCEEEEEC
Confidence 45677788899999999997432 25667888887654
No 193
>KOG2340|consensus
Probab=38.80 E-value=1.1e+02 Score=25.32 Aligned_cols=52 Identities=17% Similarity=0.253 Sum_probs=39.9
Q ss_pred HHHHHhcCCccEEEEcCcc--ccccccCCCCEEEEeCCCCCHHHHHHHHhhccc
Q psy16582 5 TMLSFNRGITNILVATDVL--EEGIDIQSCNLVIKFDPPQHTRSYVQSKAFTVV 56 (109)
Q Consensus 5 ~~~~F~~g~~~iLV~T~~~--~~Gldi~~v~~Vi~~d~p~~~~~y~qr~GR~gR 56 (109)
+-+-|-.|..++|+-|.-+ =+-.++..|..||.|.+|.++.=|..-+...+|
T Consensus 594 AR~lF~qgr~~vlLyTER~hffrR~~ikGVk~vVfYqpP~~P~FYsEiinm~~k 647 (698)
T KOG2340|consen 594 ARELFFQGRKSVLLYTERAHFFRRYHIKGVKNVVFYQPPNNPHFYSEIINMSDK 647 (698)
T ss_pred HHHHHHhcCceEEEEehhhhhhhhheecceeeEEEecCCCCcHHHHHHHhhhhh
Confidence 3455778999999998744 356788999999999999998877665544433
No 194
>PF07013 DUF1314: Protein of unknown function (DUF1314); InterPro: IPR010741 This family consists of several alphaherpesvirus proteins of around 200 residues in length. They belong to the varicellovirus ORF2 family and their function is unknown.
Probab=36.80 E-value=38 Score=23.27 Aligned_cols=78 Identities=13% Similarity=0.085 Sum_probs=43.6
Q ss_pred ccccccccCCCCEEE-----------EeCCC-CCHHHHHHHHhhcccCCCceEEEEeccCchHHHhh-----cchHHHHH
Q psy16582 22 VLEEGIDIQSCNLVI-----------KFDPP-QHTRSYVQSKAFTVVRHKAEQILSQYPKSERYLQY-----NSPKINRL 84 (109)
Q Consensus 22 ~~~~Gldi~~v~~Vi-----------~~d~p-~~~~~y~qr~GR~gR~g~~~~~~~~~~~~~~~~~~-----~~~~~~~~ 84 (109)
+++|-+|+|+=+-|- .|-.| .+...++|.+|||.-.|..-.++.+...+...+.+ +.--...+
T Consensus 8 LaGR~iDLPgG~el~I~~~~g~~~~~~f~~~g~~~~~~~~~IGRA~a~g~~RkF~iy~~~~~~vyGyE~~tgLH~La~sL 87 (177)
T PF07013_consen 8 LAGRTIDLPGGDELRISANTGRPNTGKFVRSGSSRLMPVHFIGRAYAIGSCRKFVIYLSRNGSVYGYENGTGLHFLAKSL 87 (177)
T ss_pred hcCcceecCCCCeEEEecCCCCceEEEEecCCCCceehhheehhhhccCCCceEEEEEccCCeEEeecCCcchhhhhHHH
Confidence 456677777655432 23333 36678899999998877655554443333222211 11223455
Q ss_pred HHHHhhcCcccHHHH
Q psy16582 85 LQLLRRYNPDQRTII 99 (109)
Q Consensus 85 ~~~~~~~~~~~r~~~ 99 (109)
-+.+......+|+++
T Consensus 88 hdfL~~~GlSqRDl~ 102 (177)
T PF07013_consen 88 HDFLTTKGLSQRDLM 102 (177)
T ss_pred HHHHHHcCcccccEE
Confidence 666777776666643
No 195
>COG1212 KdsB CMP-2-keto-3-deoxyoctulosonic acid synthetase [Cell envelope biogenesis, outer membrane]
Probab=36.59 E-value=37 Score=24.60 Aligned_cols=30 Identities=13% Similarity=0.348 Sum_probs=23.2
Q ss_pred ChHHHHHHHh---cC-CccEEEEcCccccccccC
Q psy16582 1 MDVQTMLSFN---RG-ITNILVATDVLEEGIDIQ 30 (109)
Q Consensus 1 er~~~~~~F~---~g-~~~iLV~T~~~~~Gldi~ 30 (109)
|+.+.++++| .| ++.+.++.++.+-|+|.|
T Consensus 199 E~~E~LEQLR~Le~G~kI~v~i~~~~p~~gVDT~ 232 (247)
T COG1212 199 EKIESLEQLRVLENGEKIHVEIVKEVPSIGVDTP 232 (247)
T ss_pred HHHHHHHHHHHHHcCCeeEEEEeccCCCCCCCCH
Confidence 4556666666 44 889999999999999976
No 196
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=34.95 E-value=46 Score=26.46 Aligned_cols=37 Identities=14% Similarity=0.151 Sum_probs=27.7
Q ss_pred hHHHHHHHhcCCccEEEEcCccccccccCCCCEEEEeC
Q psy16582 2 DVQTMLSFNRGITNILVATDVLEEGIDIQSCNLVIKFD 39 (109)
Q Consensus 2 r~~~~~~F~~g~~~iLV~T~~~~~Gldi~~v~~Vi~~d 39 (109)
|.+++.+.++|+.+|+|+|..+- -..++++++||.-+
T Consensus 65 r~~~~~~~~~g~~~IVVGTrsal-f~p~~~l~lIIVDE 101 (505)
T TIGR00595 65 KLQAWRKVKNGEILVVIGTRSAL-FLPFKNLGLIIVDE 101 (505)
T ss_pred HHHHHHHHHcCCCCEEECChHHH-cCcccCCCEEEEEC
Confidence 56677788899999999997543 24577888887643
No 197
>PF10141 ssDNA-exonuc_C: Single-strand DNA-specific exonuclease, C terminal domain; InterPro: IPR018779 This entry represents a domain found at the C terminus of a set of single-stranded DNA-specific exonucleases, including RecJ. Its function has not, as yet, been determined.
Probab=33.64 E-value=1.6e+02 Score=20.21 Aligned_cols=28 Identities=14% Similarity=0.121 Sum_probs=23.0
Q ss_pred ccccccCCCCEEEEeCCCCCHHHHHHHH
Q psy16582 24 EEGIDIQSCNLVIKFDPPQHTRSYVQSK 51 (109)
Q Consensus 24 ~~Gldi~~v~~Vi~~d~p~~~~~y~qr~ 51 (109)
...-...+++.||.+|+|.+.+.+-+.+
T Consensus 44 ~~~~~~~~~~~lVl~D~P~~~~~l~~~l 71 (195)
T PF10141_consen 44 EAEDEDESYDNLVLLDLPPSLEQLKELL 71 (195)
T ss_pred hhhhccccCCEEEEEeCCCCHHHHHHHH
Confidence 3344557899999999999999998877
No 198
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=32.82 E-value=26 Score=30.19 Aligned_cols=20 Identities=30% Similarity=0.451 Sum_probs=16.3
Q ss_pred cCC-ccEEEEcCccccccccC
Q psy16582 11 RGI-TNILVATDVLEEGIDIQ 30 (109)
Q Consensus 11 ~g~-~~iLV~T~~~~~Gldi~ 30 (109)
.|+ -.|-|||++++||.||.
T Consensus 486 AG~~GaVTIATNMAGRGTDIk 506 (939)
T PRK12902 486 AGRKGAVTIATNMAGRGTDII 506 (939)
T ss_pred cCCCCcEEEeccCCCCCcCEe
Confidence 554 44889999999999975
No 199
>cd06404 PB1_aPKC PB1 domain is an essential modular domain of the atypical protein kinase C (aPKC) which in complex with Par6 and Par3 proteins is crucial for establishment of apical-basal polarity of animal cells. PB1 domain is a modular domain mediating specific protein-protein interaction which play roles in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi,
Probab=30.35 E-value=1.3e+02 Score=18.22 Aligned_cols=33 Identities=9% Similarity=0.120 Sum_probs=26.0
Q ss_pred EEEEeCCCCCHHHHHHHHhhcccCCCceEEEEe
Q psy16582 34 LVIKFDPPQHTRSYVQSKAFTVVRHKAEQILSQ 66 (109)
Q Consensus 34 ~Vi~~d~p~~~~~y~qr~GR~gR~g~~~~~~~~ 66 (109)
.+..+|.+.+.+.+.|.+....+..+.+.....
T Consensus 12 ~it~~d~~~s~e~L~~~v~~~c~~~~~q~ft~k 44 (83)
T cd06404 12 MITSIDPSISLEELCNEVRDMCRFHNDQPFTLK 44 (83)
T ss_pred EEEEcCCCcCHHHHHHHHHHHhCCCCCCcEEEE
Confidence 466788999999999999999997765454444
No 200
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=30.13 E-value=1.5e+02 Score=21.31 Aligned_cols=39 Identities=18% Similarity=0.258 Sum_probs=25.3
Q ss_pred HHHHhcCCccEEEEcCccccccccCCCCEEEEeCCCCCHHHH
Q psy16582 6 MLSFNRGITNILVATDVLEEGIDIQSCNLVIKFDPPQHTRSY 47 (109)
Q Consensus 6 ~~~F~~g~~~iLV~T~~~~~Gldi~~v~~Vi~~d~p~~~~~y 47 (109)
.+.++....++++-+|...++. .+++|||.++......|
T Consensus 96 ~~~~k~~~~~l~~iDD~~~~~~---~~D~vin~~~~~~~~~y 134 (279)
T TIGR03590 96 EKLIKEFGRKILVIDDLADRPH---DCDLLLDQNLGADASDY 134 (279)
T ss_pred HHHHHHhCCeEEEEecCCCCCc---CCCEEEeCCCCcCHhHh
Confidence 4455555557888888866554 78999988665433333
No 201
>PRK05583 ribosomal protein L7Ae family protein; Provisional
Probab=29.56 E-value=60 Score=20.15 Aligned_cols=25 Identities=12% Similarity=0.202 Sum_probs=19.2
Q ss_pred HHHHHHHhcCCcc-EEEEcCcccccc
Q psy16582 3 VQTMLSFNRGITN-ILVATDVLEEGI 27 (109)
Q Consensus 3 ~~~~~~F~~g~~~-iLV~T~~~~~Gl 27 (109)
+++++..++|+.. |++|+|+.+.+.
T Consensus 23 ~~v~~aik~gk~~lVI~A~D~s~~~k 48 (104)
T PRK05583 23 NKCEEAIKKKKVYLIIISNDISENSK 48 (104)
T ss_pred HHHHHHHHcCCceEEEEeCCCCHhHH
Confidence 4577888889888 668999988654
No 202
>PF07313 DUF1460: Protein of unknown function (DUF1460); InterPro: IPR010846 This family consists of several hypothetical bacterial proteins of around 260 residues in length. The function of this family is unknown.; PDB: 2P1G_B 2IM9_A.
Probab=29.37 E-value=27 Score=24.80 Aligned_cols=32 Identities=13% Similarity=0.252 Sum_probs=22.2
Q ss_pred HHHHHhcCCccEEEEcCccccccccCCCCEEEEeC
Q psy16582 5 TMLSFNRGITNILVATDVLEEGIDIQSCNLVIKFD 39 (109)
Q Consensus 5 ~~~~F~~g~~~iLV~T~~~~~Gldi~~v~~Vi~~d 39 (109)
++..+++|.+=-+++.. .|+|+.++.++|..+
T Consensus 150 ~~~~i~~GDiI~i~t~~---~GLDvsH~Giav~~~ 181 (216)
T PF07313_consen 150 LLSQIKNGDIIAIVTNI---KGLDVSHVGIAVWKN 181 (216)
T ss_dssp HHTTS-TT-EEEEEEEC---TTECEEEEEEEEEET
T ss_pred HHhcCCCCCEEEEEeCC---CCCceeeEEEEEEEC
Confidence 45667788865555555 799999999998764
No 203
>PRK05451 dihydroorotase; Provisional
Probab=27.33 E-value=56 Score=24.43 Aligned_cols=25 Identities=12% Similarity=0.068 Sum_probs=21.2
Q ss_pred ChHHHHHHHhcCCccEEEEcCcccc
Q psy16582 1 MDVQTMLSFNRGITNILVATDVLEE 25 (109)
Q Consensus 1 er~~~~~~F~~g~~~iLV~T~~~~~ 25 (109)
+|+..++.+++|.++++|+||-+.-
T Consensus 228 d~~aLw~~l~~G~Id~~i~SDHaP~ 252 (345)
T PRK05451 228 HRQALREAATSGNPKFFLGTDSAPH 252 (345)
T ss_pred HHHHHHHHHHcCCCCEEEeCCCCCC
Confidence 3678899999999998899998754
No 204
>PRK13601 putative L7Ae-like ribosomal protein; Provisional
Probab=26.27 E-value=91 Score=18.55 Aligned_cols=23 Identities=22% Similarity=0.205 Sum_probs=17.9
Q ss_pred HHHHHHHhcCCcc-EEEEcCcccc
Q psy16582 3 VQTMLSFNRGITN-ILVATDVLEE 25 (109)
Q Consensus 3 ~~~~~~F~~g~~~-iLV~T~~~~~ 25 (109)
+++++..++|+.+ |+||.|+..+
T Consensus 14 ~~vlkaIk~gkakLViiA~Da~~~ 37 (82)
T PRK13601 14 KQTLKAITNCNVLQVYIAKDAEEH 37 (82)
T ss_pred HHHHHHHHcCCeeEEEEeCCCCHH
Confidence 4678888999888 6689988653
No 205
>cd03770 SR_TndX_transposase Serine Recombinase (SR) family, TndX-like transposase subfamily, catalytic domain; composed of large serine recombinases similar to Clostridium TndX and TnpX transposases. Serine recombinases catalyze site-specific recombination of DNA molecules by a concerted, four-strand cleavage and rejoining mechanism which involves a transient phosphoserine linkage between DNA and the enzyme. They are functionally versatile and include resolvases, invertases, integrases, and transposases. TndX mediates the excision and circularization of the conjugative transposon Tn5397 from Clostridium difficile. TnpX is responsible for the movement of the nonconjugative chloramphenicol resistance elements of the Tn4451/3 family. Mobile genetic elements such as transposons are important vehicles for the transmission of virulence and antibiotic resistance in many microorganisms.
Probab=25.08 E-value=88 Score=20.05 Aligned_cols=20 Identities=15% Similarity=0.363 Sum_probs=14.9
Q ss_pred HHHHHHHhcCCccEEEEcCc
Q psy16582 3 VQTMLSFNRGITNILVATDV 22 (109)
Q Consensus 3 ~~~~~~F~~g~~~iLV~T~~ 22 (109)
++.++..+.|++++||++++
T Consensus 58 ~~ll~~~~~g~vd~vvv~~l 77 (140)
T cd03770 58 NRMIEDIEAGKIDIVIVKDM 77 (140)
T ss_pred HHHHHHHHcCCCCEEEEecc
Confidence 35677778888888887774
No 206
>TIGR00856 pyrC_dimer dihydroorotase, homodimeric type. This homodimeric form of dihydroorotase is less common in microbial genomes than a related dihydroorotase that appears in a complex with aspartyltranscarbamoylase or as a homologous domain in multifunctional proteins of pyrimidine biosynthesis in higher eukaryotes.
Probab=24.96 E-value=67 Score=24.08 Aligned_cols=27 Identities=11% Similarity=0.107 Sum_probs=22.1
Q ss_pred ChHHHHHHHhcCCccEEEEcCcccccc
Q psy16582 1 MDVQTMLSFNRGITNILVATDVLEEGI 27 (109)
Q Consensus 1 er~~~~~~F~~g~~~iLV~T~~~~~Gl 27 (109)
+|+..++.+++|.++++|+||-+.--.
T Consensus 225 d~~aL~~~l~~G~id~~i~SDHaP~~~ 251 (341)
T TIGR00856 225 HQQALLELAASGFPKFFLGTDSAPHAR 251 (341)
T ss_pred HHHHHHHHHHcCCCCEEEeCCCCCCCh
Confidence 367889999999999889999875543
No 207
>PRK06683 hypothetical protein; Provisional
Probab=24.15 E-value=1.1e+02 Score=18.16 Aligned_cols=23 Identities=22% Similarity=0.384 Sum_probs=18.1
Q ss_pred HHHHHHHhcCCcc-EEEEcCcccc
Q psy16582 3 VQTMLSFNRGITN-ILVATDVLEE 25 (109)
Q Consensus 3 ~~~~~~F~~g~~~-iLV~T~~~~~ 25 (109)
+++++..++|+.+ |+||.|+...
T Consensus 17 ~~v~kaik~gkaklViiA~Da~~~ 40 (82)
T PRK06683 17 KRTLEAIKNGIVKEVVIAEDADMR 40 (82)
T ss_pred HHHHHHHHcCCeeEEEEECCCCHH
Confidence 4678888989888 6699998664
No 208
>PRK07283 hypothetical protein; Provisional
Probab=23.22 E-value=91 Score=18.99 Aligned_cols=25 Identities=12% Similarity=0.139 Sum_probs=19.9
Q ss_pred HHHHHHHhcCCcc-EEEEcCcccccc
Q psy16582 3 VQTMLSFNRGITN-ILVATDVLEEGI 27 (109)
Q Consensus 3 ~~~~~~F~~g~~~-iLV~T~~~~~Gl 27 (109)
+++++..++|+.. |++|.|+.+.+.
T Consensus 24 ~~v~~aik~gk~~lVi~A~Das~~~~ 49 (98)
T PRK07283 24 ELVVKAIQSGQAKLVFLANDAGPNLT 49 (98)
T ss_pred HHHHHHHHcCCccEEEEeCCCCHHHH
Confidence 4677888888888 669999988766
No 209
>PRK07714 hypothetical protein; Provisional
Probab=23.22 E-value=90 Score=19.01 Aligned_cols=25 Identities=12% Similarity=0.181 Sum_probs=19.3
Q ss_pred HHHHHHHhcCCcc-EEEEcCcccccc
Q psy16582 3 VQTMLSFNRGITN-ILVATDVLEEGI 27 (109)
Q Consensus 3 ~~~~~~F~~g~~~-iLV~T~~~~~Gl 27 (109)
+++++..++|+.. |++|.|+.+...
T Consensus 24 ~~v~~al~~g~~~lViiA~D~s~~~~ 49 (100)
T PRK07714 24 ELVLKEVRSGKAKLVLLSEDASVNTT 49 (100)
T ss_pred HHHHHHHHhCCceEEEEeCCCCHHHH
Confidence 4677888888888 668999887644
No 210
>PHA02783 uncharacterized protein; Provisional
Probab=23.13 E-value=56 Score=21.42 Aligned_cols=48 Identities=17% Similarity=0.175 Sum_probs=30.2
Q ss_pred CccEEEEcCccccccccCCCCEEEEe---CCCCCHHHHHHHHhhcccCCCc
Q psy16582 13 ITNILVATDVLEEGIDIQSCNLVIKF---DPPQHTRSYVQSKAFTVVRHKA 60 (109)
Q Consensus 13 ~~~iLV~T~~~~~Gldi~~v~~Vi~~---d~p~~~~~y~qr~GR~gR~g~~ 60 (109)
++.|-|-|.....|.|--+++++-.| |+-.--++-+||.|-++|...+
T Consensus 57 eytisiitescdvgfdsididvindykiidmytidsstiqrrghtcristk 107 (181)
T PHA02783 57 EYTISIITESCDVGFDSIDIDVINDYKIIDMYTIDSSTIQRRGHTCRISTK 107 (181)
T ss_pred eeEEEEEeeccccCccceeeeeecceeEEEEEEecchhhhhcCceEEeeee
Confidence 34555667777777776666655332 3333334568999999996543
No 211
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=22.91 E-value=65 Score=22.61 Aligned_cols=14 Identities=14% Similarity=-0.014 Sum_probs=11.7
Q ss_pred HHHHHHHHhhcccC
Q psy16582 44 TRSYVQSKAFTVVR 57 (109)
Q Consensus 44 ~~~y~qr~GR~gR~ 57 (109)
..+|++|+|++|..
T Consensus 67 ~~~yl~rlG~~~~s 80 (195)
T PF12761_consen 67 GDSYLSRLGRGGKS 80 (195)
T ss_pred hHHHHHHhccccCC
Confidence 46899999999873
No 212
>PRK14873 primosome assembly protein PriA; Provisional
Probab=22.83 E-value=1.4e+02 Score=24.87 Aligned_cols=38 Identities=21% Similarity=0.226 Sum_probs=29.4
Q ss_pred ChHHHHHHHhcCCccEEEEcCccccccccCCCCEEEEeC
Q psy16582 1 MDVQTMLSFNRGITNILVATDVLEEGIDIQSCNLVIKFD 39 (109)
Q Consensus 1 er~~~~~~F~~g~~~iLV~T~~~~~Gldi~~v~~Vi~~d 39 (109)
+|.+.+.+.++|+.+|+|+|-.+ --.-+++..+||..+
T Consensus 228 ~R~~~w~~~~~G~~~IViGtRSA-vFaP~~~LgLIIvdE 265 (665)
T PRK14873 228 DRYRRWLAVLRGQARVVVGTRSA-VFAPVEDLGLVAIWD 265 (665)
T ss_pred HHHHHHHHHhCCCCcEEEEccee-EEeccCCCCEEEEEc
Confidence 46778888899999999999874 235666888888754
No 213
>PF02142 MGS: MGS-like domain This is a subfamily of this family; InterPro: IPR011607 This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. The known structures in this domain show a common phosphate binding site []. ; PDB: 4A1O_A 3ZZM_A 1ZCZ_A 1M6V_C 1CS0_C 1C30_E 1C3O_G 1BXR_A 1T36_E 1A9X_A ....
Probab=22.08 E-value=93 Score=18.48 Aligned_cols=19 Identities=21% Similarity=0.293 Sum_probs=12.8
Q ss_pred HHHHHHhcCCccEEEEcCc
Q psy16582 4 QTMLSFNRGITNILVATDV 22 (109)
Q Consensus 4 ~~~~~F~~g~~~iLV~T~~ 22 (109)
++++.+++|+++++|.|.-
T Consensus 51 ~i~~~i~~~~IdlVIn~~~ 69 (95)
T PF02142_consen 51 QIMDLIKNGKIDLVINTPY 69 (95)
T ss_dssp HHHHHHHTTSEEEEEEE--
T ss_pred HHHHHHHcCCeEEEEEeCC
Confidence 4777888888887776654
No 214
>PF12614 RRF_GI: Ribosome recycling factor ; InterPro: IPR022253 This family of proteins is found in bacteria and viruses. Proteins in this family are approximately 130 amino acids in length. There are two conserved sequence motifs: LPS and LKR. Overproduction of ribosome recycling factor (RRF) reduces tna operon expression and increases the rate of cleavage of TnaC-tRNA(2)(Pro), relieving the growth inhibition associated with plasmid-mediated tnaC overexpression.
Probab=22.02 E-value=54 Score=21.45 Aligned_cols=14 Identities=7% Similarity=-0.085 Sum_probs=10.6
Q ss_pred CCHHHHHHHHhhcc
Q psy16582 42 QHTRSYVQSKAFTV 55 (109)
Q Consensus 42 ~~~~~y~qr~GR~g 55 (109)
-...+++||+|+..
T Consensus 7 I~LpSlIHRig~~~ 20 (128)
T PF12614_consen 7 IPLPSLIHRIGREA 20 (128)
T ss_pred eccHHHHHHhhHHH
Confidence 34568999999865
No 215
>PF14091 DUF4269: Domain of unknown function (DUF4269)
Probab=21.86 E-value=1.9e+02 Score=19.43 Aligned_cols=43 Identities=23% Similarity=0.332 Sum_probs=25.7
Q ss_pred HHHHHHhcCCccEEEEcCccccccccC--CCCEEEEeCCCCCHHHHHH
Q psy16582 4 QTMLSFNRGITNILVATDVLEEGIDIQ--SCNLVIKFDPPQHTRSYVQ 49 (109)
Q Consensus 4 ~~~~~F~~g~~~iLV~T~~~~~Gldi~--~v~~Vi~~d~p~~~~~y~q 49 (109)
.+++.++.= -.+|++|--+ |||+| +++.+..+.=+......++
T Consensus 8 ~i~~~L~~~-~PiL~GTiPi--~Idi~~SDLDIic~~~d~~~F~~~l~ 52 (152)
T PF14091_consen 8 GILEKLAAY-DPILVGTIPI--GIDIPGSDLDIICEVPDPEAFEQLLQ 52 (152)
T ss_pred hHHHHhhcC-CCEEeccccc--ccCCCCCCccEEEEeCCHHHHHHHHH
Confidence 455555442 5689998876 67766 5777777763333333333
No 216
>smart00851 MGS MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in Carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. This family also includes inosicase. The known structures in this family show a common phosphate binding site PUBMED:10526357.
Probab=21.85 E-value=1.1e+02 Score=17.98 Aligned_cols=18 Identities=11% Similarity=0.176 Sum_probs=12.0
Q ss_pred HHHHHHhcCCccEEEEcC
Q psy16582 4 QTMLSFNRGITNILVATD 21 (109)
Q Consensus 4 ~~~~~F~~g~~~iLV~T~ 21 (109)
.+++.+++|+++++|.|.
T Consensus 46 ~i~~~i~~g~id~VIn~~ 63 (90)
T smart00851 46 AILDLIKNGEIDLVINTL 63 (90)
T ss_pred HHHHHhcCCCeEEEEECC
Confidence 456667777777766665
No 217
>PTZ00106 60S ribosomal protein L30; Provisional
Probab=21.34 E-value=1.1e+02 Score=19.16 Aligned_cols=23 Identities=9% Similarity=0.271 Sum_probs=17.8
Q ss_pred HHHHHHHhcCCcc-EEEEcCcccc
Q psy16582 3 VQTMLSFNRGITN-ILVATDVLEE 25 (109)
Q Consensus 3 ~~~~~~F~~g~~~-iLV~T~~~~~ 25 (109)
+++++..+.|+.. |+||+|+.+.
T Consensus 31 ~~vlkalk~gkaklViiA~D~~~~ 54 (108)
T PTZ00106 31 KSTLKALRNGKAKLVIISNNCPPI 54 (108)
T ss_pred HHHHHHHHcCCeeEEEEeCCCCHH
Confidence 4677888888888 6689888654
No 218
>PRK13602 putative ribosomal protein L7Ae-like; Provisional
Probab=20.80 E-value=1.4e+02 Score=17.63 Aligned_cols=23 Identities=30% Similarity=0.414 Sum_probs=17.5
Q ss_pred HHHHHHHhcCCcc-EEEEcCcccc
Q psy16582 3 VQTMLSFNRGITN-ILVATDVLEE 25 (109)
Q Consensus 3 ~~~~~~F~~g~~~-iLV~T~~~~~ 25 (109)
+++++..++|+.. |++|.|+.+.
T Consensus 17 ~~v~kai~~gkaklViiA~D~~~~ 40 (82)
T PRK13602 17 KQTVKALKRGSVKEVVVAEDADPR 40 (82)
T ss_pred HHHHHHHHcCCeeEEEEECCCCHH
Confidence 4677888888888 5688888664
No 219
>PF04312 DUF460: Protein of unknown function (DUF460); InterPro: IPR007408 This is an archaeal protein of unknown function.
Probab=20.04 E-value=1.3e+02 Score=19.99 Aligned_cols=22 Identities=23% Similarity=0.153 Sum_probs=16.6
Q ss_pred hHHHHHHHhcCCccEEEEcCcc
Q psy16582 2 DVQTMLSFNRGITNILVATDVL 23 (109)
Q Consensus 2 r~~~~~~F~~g~~~iLV~T~~~ 23 (109)
+.++++-..+--..++||||+.
T Consensus 65 ~~evi~~I~~~G~PviVAtDV~ 86 (138)
T PF04312_consen 65 RSEVIEWISEYGKPVIVATDVS 86 (138)
T ss_pred HHHHHHHHHHcCCEEEEEecCC
Confidence 4566776666667899999994
Done!