Query psy16582
Match_columns 109
No_of_seqs 137 out of 1078
Neff 8.2
Searched_HMMs 29240
Date Fri Aug 16 16:40:51 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16582.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/16582hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3eaq_A Heat resistant RNA depe 99.9 1.9E-22 6.6E-27 139.5 9.2 71 1-71 69-139 (212)
2 2hjv_A ATP-dependent RNA helic 99.9 3.1E-22 1.1E-26 133.1 8.9 71 1-71 73-143 (163)
3 2jgn_A DBX, DDX3, ATP-dependen 99.9 8.1E-22 2.8E-26 133.9 9.8 71 1-71 84-154 (185)
4 2db3_A ATP-dependent RNA helic 99.9 5.7E-22 2E-26 149.0 9.7 93 1-98 338-430 (434)
5 1t5i_A C_terminal domain of A 99.9 3.7E-22 1.3E-26 134.0 7.5 70 1-70 69-138 (172)
6 2p6n_A ATP-dependent RNA helic 99.9 6.3E-22 2.1E-26 135.2 8.1 69 1-69 92-160 (191)
7 2rb4_A ATP-dependent RNA helic 99.9 8E-22 2.7E-26 132.3 8.4 71 1-71 72-148 (175)
8 1fuk_A Eukaryotic initiation f 99.8 7E-22 2.4E-26 131.5 4.7 71 1-71 68-138 (165)
9 3i32_A Heat resistant RNA depe 99.8 2.2E-21 7.7E-26 140.9 7.7 71 1-71 66-136 (300)
10 2yjt_D ATP-dependent RNA helic 99.7 4.2E-22 1.4E-26 133.2 0.0 71 1-71 68-138 (170)
11 2i4i_A ATP-dependent RNA helic 99.8 2.5E-20 8.5E-25 137.5 8.1 71 1-71 314-384 (417)
12 3i5x_A ATP-dependent RNA helic 99.8 4E-20 1.4E-24 141.9 9.0 74 1-74 380-454 (563)
13 3sqw_A ATP-dependent RNA helic 99.8 3.6E-20 1.2E-24 143.4 7.6 71 1-71 329-399 (579)
14 2z0m_A 337AA long hypothetical 99.8 5.1E-20 1.7E-24 132.0 7.2 77 1-77 254-330 (337)
15 2j0s_A ATP-dependent RNA helic 99.8 5.6E-20 1.9E-24 135.7 7.4 71 1-71 314-384 (410)
16 3pey_A ATP-dependent RNA helic 99.8 1.1E-19 3.9E-24 132.4 7.9 71 1-71 281-357 (395)
17 1s2m_A Putative ATP-dependent 99.8 1.9E-19 6.6E-24 132.3 8.7 72 1-72 296-367 (400)
18 3fht_A ATP-dependent RNA helic 99.8 2E-19 6.9E-24 132.1 7.9 70 1-70 304-379 (412)
19 4a2p_A RIG-I, retinoic acid in 99.8 1.2E-19 4E-24 138.0 6.5 68 1-70 440-508 (556)
20 1xti_A Probable ATP-dependent 99.8 2.8E-19 9.7E-24 130.7 8.2 71 1-71 288-358 (391)
21 3eiq_A Eukaryotic initiation f 99.8 9.1E-20 3.1E-24 134.2 5.5 72 1-72 318-389 (414)
22 1oyw_A RECQ helicase, ATP-depe 99.8 3.2E-19 1.1E-23 137.4 8.3 71 1-71 274-344 (523)
23 2v1x_A ATP-dependent DNA helic 99.8 2.5E-19 8.6E-24 139.9 7.5 71 1-71 305-375 (591)
24 1hv8_A Putative ATP-dependent 99.8 5.1E-19 1.7E-23 127.9 7.4 70 1-70 276-345 (367)
25 3oiy_A Reverse gyrase helicase 99.8 1.6E-18 5.4E-23 128.7 9.7 68 6-74 290-368 (414)
26 3tbk_A RIG-I helicase domain; 99.8 1.7E-19 5.9E-24 136.6 3.4 70 1-72 439-509 (555)
27 4gl2_A Interferon-induced heli 99.8 1E-18 3.4E-23 137.0 7.6 58 1-58 452-509 (699)
28 3fmp_B ATP-dependent RNA helic 99.7 9.8E-20 3.4E-24 137.6 0.0 69 1-69 371-445 (479)
29 1wp9_A ATP-dependent RNA helic 99.7 2.9E-18 9.9E-23 126.7 6.8 66 1-67 407-472 (494)
30 4a2q_A RIG-I, retinoic acid in 99.7 2.5E-18 8.6E-23 137.4 6.8 68 1-70 681-749 (797)
31 2jlq_A Serine protease subunit 99.7 3.7E-18 1.3E-22 129.1 6.6 70 1-71 222-312 (451)
32 1fuu_A Yeast initiation factor 99.7 2.7E-19 9.1E-24 130.8 0.0 71 1-71 297-367 (394)
33 2ykg_A Probable ATP-dependent 99.7 1.1E-18 3.8E-23 136.6 3.4 70 1-72 448-518 (696)
34 1yks_A Genome polyprotein [con 99.7 4E-18 1.4E-22 128.8 5.6 66 1-67 211-296 (440)
35 2d7d_A Uvrabc system protein B 99.7 2E-17 6.8E-22 130.6 8.5 71 1-72 483-558 (661)
36 4a2w_A RIG-I, retinoic acid in 99.7 8.7E-18 3E-22 136.7 6.2 67 1-69 681-748 (936)
37 1c4o_A DNA nucleotide excision 99.7 2.4E-17 8.2E-22 130.2 8.2 71 1-72 477-552 (664)
38 2z83_A Helicase/nucleoside tri 99.7 6.6E-18 2.3E-22 128.1 3.6 68 1-69 224-312 (459)
39 2whx_A Serine protease/ntpase/ 99.7 2.3E-17 7.8E-22 129.5 6.1 67 1-68 389-476 (618)
40 3fho_A ATP-dependent RNA helic 99.7 6.9E-18 2.4E-22 129.1 3.0 69 1-69 395-469 (508)
41 2wv9_A Flavivirin protease NS2 99.7 2.7E-17 9.1E-22 130.2 6.4 66 1-67 444-530 (673)
42 1gm5_A RECG; helicase, replica 99.7 3.8E-17 1.3E-21 131.1 5.9 68 1-68 627-695 (780)
43 2fwr_A DNA repair protein RAD2 99.7 4.4E-17 1.5E-21 122.8 4.8 60 1-60 382-441 (472)
44 2v6i_A RNA helicase; membrane, 99.6 1E-16 3.6E-21 120.7 5.7 66 1-67 205-288 (431)
45 3dmq_A RNA polymerase-associat 99.6 1E-16 3.5E-21 130.8 5.0 63 1-63 542-606 (968)
46 3rc3_A ATP-dependent RNA helic 99.6 4.7E-16 1.6E-20 123.2 8.0 69 1-70 358-445 (677)
47 1gku_B Reverse gyrase, TOP-RG; 99.6 6.5E-16 2.2E-20 127.0 8.3 39 3-41 309-352 (1054)
48 1z5z_A Helicase of the SNF2/RA 99.6 2.7E-16 9.1E-21 112.6 4.8 62 1-62 151-214 (271)
49 1tf5_A Preprotein translocase 99.6 7.4E-16 2.5E-20 123.9 7.8 60 13-72 480-547 (844)
50 2eyq_A TRCF, transcription-rep 99.6 7.9E-16 2.7E-20 127.5 7.9 71 1-71 852-923 (1151)
51 2va8_A SSO2462, SKI2-type heli 99.6 7.4E-16 2.5E-20 121.6 7.2 71 1-71 326-409 (715)
52 4ddu_A Reverse gyrase; topoiso 99.6 6.7E-16 2.3E-20 127.5 7.2 40 2-42 344-388 (1104)
53 2oca_A DAR protein, ATP-depend 99.6 1.2E-16 4E-21 121.4 2.0 61 1-61 385-446 (510)
54 3jux_A Protein translocase sub 99.6 3.1E-15 1.1E-19 119.2 9.6 66 9-74 518-591 (822)
55 2xgj_A ATP-dependent RNA helic 99.6 1E-15 3.6E-20 125.5 6.9 69 1-69 420-498 (1010)
56 3l9o_A ATP-dependent RNA helic 99.6 9E-16 3.1E-20 126.8 6.4 69 1-69 518-596 (1108)
57 2p6r_A Afuhel308 helicase; pro 99.6 1.3E-15 4.6E-20 120.1 7.1 71 1-71 310-389 (702)
58 2zj8_A DNA helicase, putative 99.6 1.3E-15 4.4E-20 120.5 6.4 70 1-70 308-387 (720)
59 2xau_A PRE-mRNA-splicing facto 99.6 2.6E-16 8.9E-21 126.1 1.1 69 1-70 352-443 (773)
60 3h1t_A Type I site-specific re 99.6 4.1E-15 1.4E-19 115.1 6.2 58 2-59 485-545 (590)
61 2fsf_A Preprotein translocase 99.5 6.1E-15 2.1E-19 118.6 6.0 68 3-72 481-585 (853)
62 1nkt_A Preprotein translocase 99.5 3.3E-14 1.1E-18 114.9 8.0 68 5-74 502-621 (922)
63 1z63_A Helicase of the SNF2/RA 99.5 1.3E-14 4.5E-19 109.9 5.2 62 1-62 380-443 (500)
64 3o8b_A HCV NS3 protease/helica 99.5 1.8E-14 6.3E-19 113.9 5.4 60 9-71 435-515 (666)
65 4a4z_A Antiviral helicase SKI2 99.5 5.2E-14 1.8E-18 115.4 6.5 66 1-67 413-489 (997)
66 1z3i_X Similar to RAD54-like; 99.4 2.8E-13 9.7E-18 106.4 6.8 67 1-67 454-525 (644)
67 2w00_A HSDR, R.ECOR124I; ATP-b 99.3 2.5E-12 8.6E-17 105.8 8.2 68 2-70 638-709 (1038)
68 3mwy_W Chromo domain-containin 99.3 1.1E-12 3.9E-17 105.1 4.8 67 1-67 610-681 (800)
69 4f92_B U5 small nuclear ribonu 99.3 2.2E-12 7.5E-17 110.3 5.9 69 1-69 1227-1307(1724)
70 4f92_B U5 small nuclear ribonu 99.2 3.5E-12 1.2E-16 109.1 4.5 68 1-68 392-471 (1724)
71 2vl7_A XPD; helicase, unknown 98.1 3.2E-06 1.1E-10 65.2 5.7 65 1-66 417-518 (540)
72 2ipc_A Preprotein translocase 96.5 0.0098 3.4E-07 49.0 8.0 36 34-69 662-697 (997)
73 4a15_A XPD helicase, ATP-depen 96.4 0.012 4.1E-07 46.1 7.5 64 2-66 484-581 (620)
74 3crv_A XPD/RAD3 related DNA he 94.9 0.12 4.1E-06 39.6 8.1 41 2-42 426-473 (551)
75 3hgt_A HDA1 complex subunit 3; 90.4 0.46 1.6E-05 34.7 5.0 57 11-67 168-234 (328)
76 3brc_A Conserved protein of un 69.4 3.4 0.00011 26.7 2.5 50 4-66 54-115 (156)
77 1gm5_A RECG; helicase, replica 58.1 6.7 0.00023 31.6 2.9 37 2-38 460-497 (780)
78 2eyq_A TRCF, transcription-rep 46.2 8.7 0.0003 32.3 1.9 36 2-37 695-731 (1151)
79 2aif_A Ribosomal protein L7A; 28.2 60 0.0021 20.1 3.3 25 3-27 47-72 (135)
80 2im9_A Hypothetical protein; s 27.8 14 0.00047 27.0 0.2 36 4-39 236-276 (333)
81 3o85_A Ribosomal protein L7AE; 27.3 1.1E+02 0.0037 18.6 8.4 24 3-26 37-61 (122)
82 2jnb_A NHP2-like protein 1; sp 26.8 17 0.0006 23.1 0.5 22 3-24 56-78 (144)
83 3pnu_A Dihydroorotase; TIM bar 24.5 49 0.0017 23.9 2.7 27 2-28 242-268 (359)
84 3bor_A Human initiation factor 22.4 39 0.0013 22.2 1.6 30 8-37 144-179 (237)
85 2z26_A Dihydroorotase, dhoase; 22.3 58 0.002 23.0 2.7 23 2-24 231-253 (347)
No 1
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=99.88 E-value=1.9e-22 Score=139.49 Aligned_cols=71 Identities=25% Similarity=0.431 Sum_probs=64.6
Q ss_pred ChHHHHHHHhcCCccEEEEcCccccccccCCCCEEEEeCCCCCHHHHHHHHhhcccCCCceEEEEeccCch
Q psy16582 1 MDVQTMLSFNRGITNILVATDVLEEGIDIQSCNLVIKFDPPQHTRSYVQSKAFTVVRHKAEQILSQYPKSE 71 (109)
Q Consensus 1 er~~~~~~F~~g~~~iLV~T~~~~~Gldi~~v~~Vi~~d~p~~~~~y~qr~GR~gR~g~~~~~~~~~~~~~ 71 (109)
+|++++++|++|+++|||||+++++|+|+|++++||+||+|++..+|+||+||+||.|+.|.++.++...+
T Consensus 69 ~r~~~~~~f~~g~~~vlvaT~~~~~Gidi~~v~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~l~~~~~ 139 (212)
T 3eaq_A 69 ERERVLGAFRQGEVRVLVATDVAARGLDIPQVDLVVHYRLPDRAEAYQHRSGRTGRAGRGGRVVLLYGPRE 139 (212)
T ss_dssp HHHHHHHHHHSSSCCEEEECTTTTCSSSCCCBSEEEESSCCSSHHHHHHHHTTBCCCC--BEEEEEECGGG
T ss_pred HHHHHHHHHHCCCCeEEEecChhhcCCCCccCcEEEECCCCcCHHHHHHHhcccCCCCCCCeEEEEEchhH
Confidence 47889999999999999999999999999999999999999999999999999999998888888876544
No 2
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=99.87 E-value=3.1e-22 Score=133.08 Aligned_cols=71 Identities=35% Similarity=0.425 Sum_probs=65.8
Q ss_pred ChHHHHHHHhcCCccEEEEcCccccccccCCCCEEEEeCCCCCHHHHHHHHhhcccCCCceEEEEeccCch
Q psy16582 1 MDVQTMLSFNRGITNILVATDVLEEGIDIQSCNLVIKFDPPQHTRSYVQSKAFTVVRHKAEQILSQYPKSE 71 (109)
Q Consensus 1 er~~~~~~F~~g~~~iLV~T~~~~~Gldi~~v~~Vi~~d~p~~~~~y~qr~GR~gR~g~~~~~~~~~~~~~ 71 (109)
+|++++++|++|+++|||||+++++|+|+|++++||+||+|++..+|+||+||+||.|+.+.++.++...+
T Consensus 73 ~r~~~~~~f~~g~~~vlv~T~~~~~Gld~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~ 143 (163)
T 2hjv_A 73 DRFDVMNEFKRGEYRYLVATDVAARGIDIENISLVINYDLPLEKESYVHRTGRTGRAGNKGKAISFVTAFE 143 (163)
T ss_dssp HHHHHHHHHHTTSCSEEEECGGGTTTCCCSCCSEEEESSCCSSHHHHHHHTTTSSCTTCCEEEEEEECGGG
T ss_pred HHHHHHHHHHcCCCeEEEECChhhcCCchhcCCEEEEeCCCCCHHHHHHhccccCcCCCCceEEEEecHHH
Confidence 47889999999999999999999999999999999999999999999999999999998888888765443
No 3
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=99.87 E-value=8.1e-22 Score=133.91 Aligned_cols=71 Identities=28% Similarity=0.353 Sum_probs=58.8
Q ss_pred ChHHHHHHHhcCCccEEEEcCccccccccCCCCEEEEeCCCCCHHHHHHHHhhcccCCCceEEEEeccCch
Q psy16582 1 MDVQTMLSFNRGITNILVATDVLEEGIDIQSCNLVIKFDPPQHTRSYVQSKAFTVVRHKAEQILSQYPKSE 71 (109)
Q Consensus 1 er~~~~~~F~~g~~~iLV~T~~~~~Gldi~~v~~Vi~~d~p~~~~~y~qr~GR~gR~g~~~~~~~~~~~~~ 71 (109)
+|++++++|++|+++|||||+++++|+|+|++++||+||+|++..+|+||+||+||.|..+.++.++...+
T Consensus 84 ~r~~~~~~f~~g~~~vLvaT~~~~~Gldi~~~~~VI~~d~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~ 154 (185)
T 2jgn_A 84 DREEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERN 154 (185)
T ss_dssp --CHHHHHHHHTSSSEEEEEC------CCCSBSEEEESSCCSSHHHHHHHHTTBCCTTSCEEEEEEECGGG
T ss_pred HHHHHHHHHHcCCCeEEEEcChhhcCCCcccCCEEEEeCCCCCHHHHHHHccccCCCCCCcEEEEEEchhh
Confidence 47789999999999999999999999999999999999999999999999999999998888888865443
No 4
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=99.87 E-value=5.7e-22 Score=149.03 Aligned_cols=93 Identities=22% Similarity=0.305 Sum_probs=75.5
Q ss_pred ChHHHHHHHhcCCccEEEEcCccccccccCCCCEEEEeCCCCCHHHHHHHHhhcccCCCceEEEEeccCchHHHhhcchH
Q psy16582 1 MDVQTMLSFNRGITNILVATDVLEEGIDIQSCNLVIKFDPPQHTRSYVQSKAFTVVRHKAEQILSQYPKSERYLQYNSPK 80 (109)
Q Consensus 1 er~~~~~~F~~g~~~iLV~T~~~~~Gldi~~v~~Vi~~d~p~~~~~y~qr~GR~gR~g~~~~~~~~~~~~~~~~~~~~~~ 80 (109)
+|++++++|++|+++|||||+++++|+|+|+|++||+||+|.+..+|+||+||+||.|+.|.++.++.+++.. ..
T Consensus 338 ~R~~~l~~F~~g~~~vLvaT~v~~rGlDi~~v~~VI~~d~p~~~~~y~qriGR~gR~g~~G~a~~~~~~~~~~-----~~ 412 (434)
T 2db3_A 338 QREQALRDFKNGSMKVLIATSVASRGLDIKNIKHVINYDMPSKIDDYVHRIGRTGRVGNNGRATSFFDPEKDR-----AI 412 (434)
T ss_dssp HHHHHHHHHHTSSCSEEEECGGGTSSCCCTTCCEEEESSCCSSHHHHHHHHTTSSCTTCCEEEEEEECTTTCG-----GG
T ss_pred HHHHHHHHHHcCCCcEEEEchhhhCCCCcccCCEEEEECCCCCHHHHHHHhcccccCCCCCEEEEEEeccccH-----HH
Confidence 4789999999999999999999999999999999999999999999999999999999999998887533211 12
Q ss_pred HHHHHHHHhhcCcccHHH
Q psy16582 81 INRLLQLLRRYNPDQRTI 98 (109)
Q Consensus 81 ~~~~~~~~~~~~~~~r~~ 98 (109)
...+.+.+.+..+....+
T Consensus 413 ~~~l~~~l~~~~~~vp~~ 430 (434)
T 2db3_A 413 AADLVKILEGSGQTVPDF 430 (434)
T ss_dssp HHHHHHHHHHTTCCCCGG
T ss_pred HHHHHHHHHHcCCCCCHH
Confidence 334455555555544333
No 5
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=99.86 E-value=3.7e-22 Score=134.01 Aligned_cols=70 Identities=20% Similarity=0.310 Sum_probs=65.7
Q ss_pred ChHHHHHHHhcCCccEEEEcCccccccccCCCCEEEEeCCCCCHHHHHHHHhhcccCCCceEEEEeccCc
Q psy16582 1 MDVQTMLSFNRGITNILVATDVLEEGIDIQSCNLVIKFDPPQHTRSYVQSKAFTVVRHKAEQILSQYPKS 70 (109)
Q Consensus 1 er~~~~~~F~~g~~~iLV~T~~~~~Gldi~~v~~Vi~~d~p~~~~~y~qr~GR~gR~g~~~~~~~~~~~~ 70 (109)
+|++++++|++|+++|||||+++++|+|+|++++||+||+|++...|+||+||+||.|..+.++.++...
T Consensus 69 ~r~~~~~~f~~g~~~vLvaT~~~~~Gldi~~~~~Vi~~d~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~ 138 (172)
T 1t5i_A 69 ERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDE 138 (172)
T ss_dssp HHHHHHHHHHTTSCSEEEESSCCSTTCCGGGCSEEEESSCCSSHHHHHHHHHHHTGGGCCCEEEEEECSH
T ss_pred HHHHHHHHHHCCCCcEEEECCchhcCcchhhCCEEEEECCCCCHHHHHHHhcccccCCCCcEEEEEEcCh
Confidence 4788999999999999999999999999999999999999999999999999999999988888887654
No 6
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=99.86 E-value=6.3e-22 Score=135.25 Aligned_cols=69 Identities=26% Similarity=0.391 Sum_probs=62.0
Q ss_pred ChHHHHHHHhcCCccEEEEcCccccccccCCCCEEEEeCCCCCHHHHHHHHhhcccCCCceEEEEeccC
Q psy16582 1 MDVQTMLSFNRGITNILVATDVLEEGIDIQSCNLVIKFDPPQHTRSYVQSKAFTVVRHKAEQILSQYPK 69 (109)
Q Consensus 1 er~~~~~~F~~g~~~iLV~T~~~~~Gldi~~v~~Vi~~d~p~~~~~y~qr~GR~gR~g~~~~~~~~~~~ 69 (109)
+|++++++|++|+++|||||+++++|+|+|++++||+||+|++...|+||+||+||.|..+.++.++..
T Consensus 92 ~R~~~l~~F~~g~~~vLvaT~~~~~Gldi~~v~~VI~~d~p~~~~~~~qr~GR~gR~g~~g~~i~l~~~ 160 (191)
T 2p6n_A 92 ERTKAIEAFREGKKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGCSGNTGIATTFINK 160 (191)
T ss_dssp HHHHHHHHHHHTSCSEEEECHHHHTTCCCCCCSEEEESSCCSSHHHHHHHHTTSCC---CCEEEEEECT
T ss_pred HHHHHHHHHhcCCCEEEEEcCchhcCCCcccCCEEEEeCCCCCHHHHHHHhCccccCCCCcEEEEEEcC
Confidence 478899999999999999999999999999999999999999999999999999999988888877654
No 7
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=99.86 E-value=8e-22 Score=132.28 Aligned_cols=71 Identities=23% Similarity=0.368 Sum_probs=62.1
Q ss_pred ChHHHHHHHhcCCccEEEEcCccccccccCCCCEEEEeCCC------CCHHHHHHHHhhcccCCCceEEEEeccCch
Q psy16582 1 MDVQTMLSFNRGITNILVATDVLEEGIDIQSCNLVIKFDPP------QHTRSYVQSKAFTVVRHKAEQILSQYPKSE 71 (109)
Q Consensus 1 er~~~~~~F~~g~~~iLV~T~~~~~Gldi~~v~~Vi~~d~p------~~~~~y~qr~GR~gR~g~~~~~~~~~~~~~ 71 (109)
+|++++++|++|+++|||||+++++|+|+|++++||+||+| .+..+|+||+||+||.|+.|.++.++...+
T Consensus 72 ~R~~~~~~f~~g~~~vLvaT~~~~~Gid~~~~~~Vi~~d~p~~~~~~~~~~~~~qr~GR~gR~g~~g~~~~~~~~~~ 148 (175)
T 2rb4_A 72 QRASIIQRFRDGKEKVLITTNVCARGIDVKQVTIVVNFDLPVKQGEEPDYETYLHRIGRTGRFGKKGLAFNMIEVDE 148 (175)
T ss_dssp HHHHHHHHHHTTSCSEEEECCSCCTTTCCTTEEEEEESSCCC--CCSCCHHHHHHHHCBC----CCEEEEEEECGGG
T ss_pred HHHHHHHHHHcCCCeEEEEecchhcCCCcccCCEEEEeCCCCCccccCCHHHHHHHhcccccCCCCceEEEEEccch
Confidence 47889999999999999999999999999999999999999 999999999999999999888888865544
No 8
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=99.84 E-value=7e-22 Score=131.47 Aligned_cols=71 Identities=25% Similarity=0.409 Sum_probs=60.9
Q ss_pred ChHHHHHHHhcCCccEEEEcCccccccccCCCCEEEEeCCCCCHHHHHHHHhhcccCCCceEEEEeccCch
Q psy16582 1 MDVQTMLSFNRGITNILVATDVLEEGIDIQSCNLVIKFDPPQHTRSYVQSKAFTVVRHKAEQILSQYPKSE 71 (109)
Q Consensus 1 er~~~~~~F~~g~~~iLV~T~~~~~Gldi~~v~~Vi~~d~p~~~~~y~qr~GR~gR~g~~~~~~~~~~~~~ 71 (109)
+|++++++|++|+++|||||+++++|+|+|++++||+||+|++..+|+||+||+||.|..+.++.++..++
T Consensus 68 ~r~~~~~~f~~g~~~vlv~T~~~~~G~d~~~~~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~~~~~~~ 138 (165)
T 1fuk_A 68 ERDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTNED 138 (165)
T ss_dssp HHHHHHHHHHTTSCSEEEEEGGGTTTCCCCSCSEEEESSCCSSGGGGGGSSCSCC-----CEEEEEEETTT
T ss_pred HHHHHHHHHHcCCCEEEEEcChhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccccCCCCceEEEEEcchH
Confidence 47889999999999999999999999999999999999999999999999999999998888887765443
No 9
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=99.84 E-value=2.2e-21 Score=140.92 Aligned_cols=71 Identities=27% Similarity=0.438 Sum_probs=61.6
Q ss_pred ChHHHHHHHhcCCccEEEEcCccccccccCCCCEEEEeCCCCCHHHHHHHHhhcccCCCceEEEEeccCch
Q psy16582 1 MDVQTMLSFNRGITNILVATDVLEEGIDIQSCNLVIKFDPPQHTRSYVQSKAFTVVRHKAEQILSQYPKSE 71 (109)
Q Consensus 1 er~~~~~~F~~g~~~iLV~T~~~~~Gldi~~v~~Vi~~d~p~~~~~y~qr~GR~gR~g~~~~~~~~~~~~~ 71 (109)
+|++++++|++|+++|||||+++++|+|+|+|++||+||+|++..+|+||+||+||.|+.|.++.++...+
T Consensus 66 ~r~~~~~~f~~g~~~vLVaT~va~~Gidi~~v~~VI~~d~p~s~~~y~Qr~GRagR~g~~G~~i~l~~~~e 136 (300)
T 3i32_A 66 ERERVMGAFRQGEVRVLVATDVAARGLDIPQVDLVVHYRMPDRAEAYQHRSGRTGRAGRGGRVVLLYGPRE 136 (300)
T ss_dssp HHHHHHHHHHHTSCCEEEECSTTTCSTTCCCCSEEEESSCCSSTTHHHHHHTCCC-----CEEEEEECSST
T ss_pred HHHHHHHHhhcCCceEEEEechhhcCccccceeEEEEcCCCCCHHHHHHHccCcCcCCCCceEEEEeChHH
Confidence 47889999999999999999999999999999999999999999999999999999998888888865544
No 10
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=99.72 E-value=4.2e-22 Score=133.21 Aligned_cols=71 Identities=27% Similarity=0.392 Sum_probs=65.3
Q ss_pred ChHHHHHHHhcCCccEEEEcCccccccccCCCCEEEEeCCCCCHHHHHHHHhhcccCCCceEEEEeccCch
Q psy16582 1 MDVQTMLSFNRGITNILVATDVLEEGIDIQSCNLVIKFDPPQHTRSYVQSKAFTVVRHKAEQILSQYPKSE 71 (109)
Q Consensus 1 er~~~~~~F~~g~~~iLV~T~~~~~Gldi~~v~~Vi~~d~p~~~~~y~qr~GR~gR~g~~~~~~~~~~~~~ 71 (109)
+|++++++|++|+++|||||+++++|+|+|++++||+||+|++..+|+||+||+||.|+.+.++.++...+
T Consensus 68 ~r~~~~~~f~~g~~~vLvaT~~~~~Gid~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~ 138 (170)
T 2yjt_D 68 KRNEAIKRLTEGRVNVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHD 138 (170)
Confidence 47889999999999999999999999999999999999999999999999999999998888877764433
No 11
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=99.82 E-value=2.5e-20 Score=137.50 Aligned_cols=71 Identities=28% Similarity=0.353 Sum_probs=64.2
Q ss_pred ChHHHHHHHhcCCccEEEEcCccccccccCCCCEEEEeCCCCCHHHHHHHHhhcccCCCceEEEEeccCch
Q psy16582 1 MDVQTMLSFNRGITNILVATDVLEEGIDIQSCNLVIKFDPPQHTRSYVQSKAFTVVRHKAEQILSQYPKSE 71 (109)
Q Consensus 1 er~~~~~~F~~g~~~iLV~T~~~~~Gldi~~v~~Vi~~d~p~~~~~y~qr~GR~gR~g~~~~~~~~~~~~~ 71 (109)
+|.+++++|++|+.+|||||+++++|+|+|++++||+||+|.+..+|+||+||+||.|+.|.++.++.+.+
T Consensus 314 ~r~~~~~~f~~g~~~vlvaT~~~~~Gidip~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~ 384 (417)
T 2i4i_A 314 DREEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERN 384 (417)
T ss_dssp HHHHHHHHHHHTSSCEEEECHHHHTTSCCCCEEEEEESSCCSSHHHHHHHHTTBCC--CCEEEEEEECGGG
T ss_pred HHHHHHHHHHcCCCCEEEECChhhcCCCcccCCEEEEEcCCCCHHHHHHhcCccccCCCCceEEEEEcccc
Confidence 47889999999999999999999999999999999999999999999999999999999888888865543
No 12
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=99.81 E-value=4e-20 Score=141.94 Aligned_cols=74 Identities=20% Similarity=0.270 Sum_probs=66.5
Q ss_pred ChHHHHHHHhcCCccEEEEcCccccccccCCCCEEEEeCCCCCHHHHHHHHhhcccCCCceEEEEeccC-chHHH
Q psy16582 1 MDVQTMLSFNRGITNILVATDVLEEGIDIQSCNLVIKFDPPQHTRSYVQSKAFTVVRHKAEQILSQYPK-SERYL 74 (109)
Q Consensus 1 er~~~~~~F~~g~~~iLV~T~~~~~Gldi~~v~~Vi~~d~p~~~~~y~qr~GR~gR~g~~~~~~~~~~~-~~~~~ 74 (109)
+|++++++|++|+++|||||+++++|+|+|+|++||+||+|.+..+|+||+||+||.|+.+.++.++.. +..++
T Consensus 380 ~R~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~~~~~~e~~~~ 454 (563)
T 3i5x_A 380 KRTSLVKRFKKDESGILVCTDVGARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGSSVLFICKDELPFV 454 (563)
T ss_dssp HHHHHHHHHHHCSSEEEEECGGGTSSCCCTTCCEEEEESCCSSTTHHHHHHTTSSCTTCCEEEEEEEEGGGHHHH
T ss_pred HHHHHHHHHhcCCCCEEEEcchhhcCCCcccCCEEEEECCCCchhhhhhhcCccccCCCCceEEEEEchhHHHHH
Confidence 478899999999999999999999999999999999999999999999999999999988887777544 43343
No 13
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=99.81 E-value=3.6e-20 Score=143.36 Aligned_cols=71 Identities=23% Similarity=0.285 Sum_probs=65.6
Q ss_pred ChHHHHHHHhcCCccEEEEcCccccccccCCCCEEEEeCCCCCHHHHHHHHhhcccCCCceEEEEeccCch
Q psy16582 1 MDVQTMLSFNRGITNILVATDVLEEGIDIQSCNLVIKFDPPQHTRSYVQSKAFTVVRHKAEQILSQYPKSE 71 (109)
Q Consensus 1 er~~~~~~F~~g~~~iLV~T~~~~~Gldi~~v~~Vi~~d~p~~~~~y~qr~GR~gR~g~~~~~~~~~~~~~ 71 (109)
+|++++++|++|+++|||||+++++|+|+|+|++||+||+|.+..+|+||+||+||.|+.+.++.++...+
T Consensus 329 ~R~~~~~~F~~g~~~vLVaT~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~~~~~~e 399 (579)
T 3sqw_A 329 KRTSLVKRFKKDESGILVCTDVGARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGSSVLFICKDE 399 (579)
T ss_dssp HHHHHHHHHHHCSSEEEEECGGGTSSCCCTTCCEEEEESCCSSTTHHHHHHTTSSCTTCCEEEEEEEEGGG
T ss_pred HHHHHHHHhhcCCCeEEEEcchhhcCCCcccCCEEEEcCCCCCHHHhhhhccccccCCCCceEEEEEcccH
Confidence 47889999999999999999999999999999999999999999999999999999998888877765443
No 14
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=99.80 E-value=5.1e-20 Score=131.98 Aligned_cols=77 Identities=23% Similarity=0.330 Sum_probs=69.2
Q ss_pred ChHHHHHHHhcCCccEEEEcCccccccccCCCCEEEEeCCCCCHHHHHHHHhhcccCCCceEEEEeccCchHHHhhc
Q psy16582 1 MDVQTMLSFNRGITNILVATDVLEEGIDIQSCNLVIKFDPPQHTRSYVQSKAFTVVRHKAEQILSQYPKSERYLQYN 77 (109)
Q Consensus 1 er~~~~~~F~~g~~~iLV~T~~~~~Gldi~~v~~Vi~~d~p~~~~~y~qr~GR~gR~g~~~~~~~~~~~~~~~~~~~ 77 (109)
+|.+++++|++|+++|||||+++++|+|+|++++||+||+|++..+|+||+||+||.|+.+.++.++..+..+....
T Consensus 254 ~r~~~~~~f~~~~~~vlv~T~~~~~Gid~~~~~~Vi~~~~~~s~~~~~Q~~GR~gR~g~~g~~~~~~~~~~~~~~~i 330 (337)
T 2z0m_A 254 VRNRNIDAFREGEYDMLITTDVASRGLDIPLVEKVINFDAPQDLRTYIHRIGRTGRMGRKGEAITFILNEYWLEKEV 330 (337)
T ss_dssp HHHHHHHHHHTTSCSEEEECHHHHTTCCCCCBSEEEESSCCSSHHHHHHHHTTBCGGGCCEEEEEEESSCHHHHHHH
T ss_pred HHHHHHHHHHcCCCcEEEEcCccccCCCccCCCEEEEecCCCCHHHhhHhcCccccCCCCceEEEEEeCcHHHHHHH
Confidence 47889999999999999999999999999999999999999999999999999999999888888766555554443
No 15
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=99.80 E-value=5.6e-20 Score=135.68 Aligned_cols=71 Identities=20% Similarity=0.386 Sum_probs=66.3
Q ss_pred ChHHHHHHHhcCCccEEEEcCccccccccCCCCEEEEeCCCCCHHHHHHHHhhcccCCCceEEEEeccCch
Q psy16582 1 MDVQTMLSFNRGITNILVATDVLEEGIDIQSCNLVIKFDPPQHTRSYVQSKAFTVVRHKAEQILSQYPKSE 71 (109)
Q Consensus 1 er~~~~~~F~~g~~~iLV~T~~~~~Gldi~~v~~Vi~~d~p~~~~~y~qr~GR~gR~g~~~~~~~~~~~~~ 71 (109)
+|++++++|++|+.+|||||+++++|+|+|++++||+||+|++...|+||+||+||.|+.|.++.++.+++
T Consensus 314 ~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~ 384 (410)
T 2j0s_A 314 ERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDD 384 (410)
T ss_dssp HHHHHHHHHHHTSSCEEEECGGGSSSCCCTTEEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEEEGGG
T ss_pred HHHHHHHHHHCCCCCEEEECChhhCcCCcccCCEEEEECCCCCHHHHHHhcccccCCCCceEEEEEecHHH
Confidence 47899999999999999999999999999999999999999999999999999999999999888865544
No 16
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=99.80 E-value=1.1e-19 Score=132.39 Aligned_cols=71 Identities=23% Similarity=0.378 Sum_probs=66.0
Q ss_pred ChHHHHHHHhcCCccEEEEcCccccccccCCCCEEEEeCCCC------CHHHHHHHHhhcccCCCceEEEEeccCch
Q psy16582 1 MDVQTMLSFNRGITNILVATDVLEEGIDIQSCNLVIKFDPPQ------HTRSYVQSKAFTVVRHKAEQILSQYPKSE 71 (109)
Q Consensus 1 er~~~~~~F~~g~~~iLV~T~~~~~Gldi~~v~~Vi~~d~p~------~~~~y~qr~GR~gR~g~~~~~~~~~~~~~ 71 (109)
+|++++++|++|+++|||||+++++|+|+|++++||+||+|+ +..+|+||+||+||.|..+.++.++...+
T Consensus 281 ~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~~~~Vi~~~~p~~~~~~~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~ 357 (395)
T 3pey_A 281 ERDRLIDDFREGRSKVLITTNVLARGIDIPTVSMVVNYDLPTLANGQADPATYIHRIGRTGRFGRKGVAISFVHDKN 357 (395)
T ss_dssp HHHHHHHHHHTTSCCEEEECGGGSSSCCCTTEEEEEESSCCBCTTSSBCHHHHHHHHTTSSCTTCCEEEEEEECSHH
T ss_pred HHHHHHHHHHCCCCCEEEECChhhcCCCcccCCEEEEcCCCCCCcCCCCHHHhhHhccccccCCCCceEEEEEechH
Confidence 478999999999999999999999999999999999999999 99999999999999999888888876543
No 17
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=99.79 E-value=1.9e-19 Score=132.27 Aligned_cols=72 Identities=26% Similarity=0.395 Sum_probs=67.0
Q ss_pred ChHHHHHHHhcCCccEEEEcCccccccccCCCCEEEEeCCCCCHHHHHHHHhhcccCCCceEEEEeccCchH
Q psy16582 1 MDVQTMLSFNRGITNILVATDVLEEGIDIQSCNLVIKFDPPQHTRSYVQSKAFTVVRHKAEQILSQYPKSER 72 (109)
Q Consensus 1 er~~~~~~F~~g~~~iLV~T~~~~~Gldi~~v~~Vi~~d~p~~~~~y~qr~GR~gR~g~~~~~~~~~~~~~~ 72 (109)
+|++++++|++|+.+|||||+++++|+|+|++++||+||+|++..+|+||+||+||.|+.+.++.++..++.
T Consensus 296 ~r~~~~~~f~~g~~~vLv~T~~~~~Gidip~~~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~l~~~~~~ 367 (400)
T 1s2m_A 296 ERNKVFHEFRQGKVRTLVCSDLLTRGIDIQAVNVVINFDFPKTAETYLHRIGRSGRFGHLGLAINLINWNDR 367 (400)
T ss_dssp HHHHHHHHHHTTSSSEEEESSCSSSSCCCTTEEEEEESSCCSSHHHHHHHHCBSSCTTCCEEEEEEECGGGH
T ss_pred HHHHHHHHHhcCCCcEEEEcCccccCCCccCCCEEEEeCCCCCHHHHHHhcchhcCCCCCceEEEEeccchH
Confidence 478899999999999999999999999999999999999999999999999999999999998888766544
No 18
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=99.79 E-value=2e-19 Score=132.10 Aligned_cols=70 Identities=24% Similarity=0.372 Sum_probs=64.8
Q ss_pred ChHHHHHHHhcCCccEEEEcCccccccccCCCCEEEEeCCC------CCHHHHHHHHhhcccCCCceEEEEeccCc
Q psy16582 1 MDVQTMLSFNRGITNILVATDVLEEGIDIQSCNLVIKFDPP------QHTRSYVQSKAFTVVRHKAEQILSQYPKS 70 (109)
Q Consensus 1 er~~~~~~F~~g~~~iLV~T~~~~~Gldi~~v~~Vi~~d~p------~~~~~y~qr~GR~gR~g~~~~~~~~~~~~ 70 (109)
+|++++++|++|+++|||||+++++|+|+|++++||+||+| .+..+|+||+||+||.|+.+.++.++...
T Consensus 304 ~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~~~~Vi~~~~p~~~~~~~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~ 379 (412)
T 3fht_A 304 QRAAVIERFREGKEKVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSK 379 (412)
T ss_dssp HHHHHHHHHHTTSCSEEEECGGGTSSCCCTTEEEEEESSCCBCSSSSBCHHHHHHHHTTSSCTTCCEEEEEEECSH
T ss_pred HHHHHHHHHHCCCCcEEEEcCccccCCCccCCCEEEEECCCCCCCCCcchheeecccCcccCCCCCceEEEEEcCh
Confidence 47899999999999999999999999999999999999999 57799999999999999988888887654
No 19
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=99.79 E-value=1.2e-19 Score=137.95 Aligned_cols=68 Identities=24% Similarity=0.358 Sum_probs=31.7
Q ss_pred ChHHHHHHHhc-CCccEEEEcCccccccccCCCCEEEEeCCCCCHHHHHHHHhhcccCCCceEEEEeccCc
Q psy16582 1 MDVQTMLSFNR-GITNILVATDVLEEGIDIQSCNLVIKFDPPQHTRSYVQSKAFTVVRHKAEQILSQYPKS 70 (109)
Q Consensus 1 er~~~~~~F~~-g~~~iLV~T~~~~~Gldi~~v~~Vi~~d~p~~~~~y~qr~GR~gR~g~~~~~~~~~~~~ 70 (109)
+|.+++++|++ |+++|||||+++++|+|+|+|++||+||+|+++.+|+||+|| ||. ..+.++.++...
T Consensus 440 ~R~~~~~~F~~~g~~~vLvaT~~~~~GiDip~v~~VI~~d~p~s~~~~~Qr~GR-gR~-~~g~~~~l~~~~ 508 (556)
T 4a2p_A 440 SQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGR-GRA-AGSKCILVTSKT 508 (556)
T ss_dssp --------------CCEEEEEC-----------CEEEEETCCSCHHHHHHC----------CCEEEEESCH
T ss_pred HHHHHHHHhcccCceEEEEEcCchhcCCCchhCCEEEEeCCCCCHHHHHHhcCC-CCC-CCceEEEEEeCc
Confidence 57899999999 999999999999999999999999999999999999999999 998 556666665543
No 20
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=99.79 E-value=2.8e-19 Score=130.69 Aligned_cols=71 Identities=20% Similarity=0.310 Sum_probs=66.2
Q ss_pred ChHHHHHHHhcCCccEEEEcCccccccccCCCCEEEEeCCCCCHHHHHHHHhhcccCCCceEEEEeccCch
Q psy16582 1 MDVQTMLSFNRGITNILVATDVLEEGIDIQSCNLVIKFDPPQHTRSYVQSKAFTVVRHKAEQILSQYPKSE 71 (109)
Q Consensus 1 er~~~~~~F~~g~~~iLV~T~~~~~Gldi~~v~~Vi~~d~p~~~~~y~qr~GR~gR~g~~~~~~~~~~~~~ 71 (109)
+|++++++|++|+.+|||||+++++|+|+|++++||+||+|++..+|+||+||+||.|+.+.++.++.+++
T Consensus 288 ~r~~~~~~f~~~~~~vlv~T~~~~~Gidi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~ 358 (391)
T 1xti_A 288 ERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDEN 358 (391)
T ss_dssp HHHHHHHHHHTTCCSEEEESCCCSSCBCCTTEEEEEESSCCSSHHHHHHHHCBCSSSCCCCEEEEEECSHH
T ss_pred HHHHHHHHHhcCCCcEEEECChhhcCCCcccCCEEEEeCCCCCHHHHHHhcccccCCCCceEEEEEEcccc
Confidence 47889999999999999999999999999999999999999999999999999999999888888876543
No 21
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=99.78 E-value=9.1e-20 Score=134.20 Aligned_cols=72 Identities=24% Similarity=0.411 Sum_probs=55.0
Q ss_pred ChHHHHHHHhcCCccEEEEcCccccccccCCCCEEEEeCCCCCHHHHHHHHhhcccCCCceEEEEeccCchH
Q psy16582 1 MDVQTMLSFNRGITNILVATDVLEEGIDIQSCNLVIKFDPPQHTRSYVQSKAFTVVRHKAEQILSQYPKSER 72 (109)
Q Consensus 1 er~~~~~~F~~g~~~iLV~T~~~~~Gldi~~v~~Vi~~d~p~~~~~y~qr~GR~gR~g~~~~~~~~~~~~~~ 72 (109)
+|++++++|++|+.+|||||+++++|+|+|++++||+||+|.+..+|+||+||+||.|+.|.++.++.+.+.
T Consensus 318 ~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~ 389 (414)
T 3eiq_A 318 ERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINMVTEEDK 389 (414)
T ss_dssp HHHHHHHHHSCC---CEEECSSCC--CCGGGCSCEEESSCCSSTHHHHHHSCCC-------CEEEEECSTHH
T ss_pred HHHHHHHHHHcCCCcEEEECCccccCCCccCCCEEEEeCCCCCHHHhhhhcCcccCCCCCceEEEEEcHHHH
Confidence 478899999999999999999999999999999999999999999999999999999988888888665443
No 22
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=99.78 E-value=3.2e-19 Score=137.36 Aligned_cols=71 Identities=23% Similarity=0.318 Sum_probs=65.8
Q ss_pred ChHHHHHHHhcCCccEEEEcCccccccccCCCCEEEEeCCCCCHHHHHHHHhhcccCCCceEEEEeccCch
Q psy16582 1 MDVQTMLSFNRGITNILVATDVLEEGIDIQSCNLVIKFDPPQHTRSYVQSKAFTVVRHKAEQILSQYPKSE 71 (109)
Q Consensus 1 er~~~~~~F~~g~~~iLV~T~~~~~Gldi~~v~~Vi~~d~p~~~~~y~qr~GR~gR~g~~~~~~~~~~~~~ 71 (109)
+|++++++|++|+++|||||+++++|+|+|+|++||+||+|.+..+|+||+||+||.|..+.++.++..++
T Consensus 274 ~R~~~~~~f~~g~~~vlVaT~a~~~GiD~p~v~~VI~~~~p~s~~~y~Qr~GRaGR~g~~~~~~l~~~~~d 344 (523)
T 1oyw_A 274 VRADVQEKFQRDDLQIVVATVAFGMGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPAD 344 (523)
T ss_dssp HHHHHHHHHHTTSCSEEEECTTSCTTTCCTTCCEEEESSCCSSHHHHHHHHTTSCTTSSCEEEEEEECHHH
T ss_pred HHHHHHHHHHcCCCeEEEEechhhCCCCccCccEEEEECCCCCHHHHHHHhccccCCCCCceEEEEeCHHH
Confidence 47899999999999999999999999999999999999999999999999999999998888888765443
No 23
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=99.78 E-value=2.5e-19 Score=139.90 Aligned_cols=71 Identities=15% Similarity=0.166 Sum_probs=66.1
Q ss_pred ChHHHHHHHhcCCccEEEEcCccccccccCCCCEEEEeCCCCCHHHHHHHHhhcccCCCceEEEEeccCch
Q psy16582 1 MDVQTMLSFNRGITNILVATDVLEEGIDIQSCNLVIKFDPPQHTRSYVQSKAFTVVRHKAEQILSQYPKSE 71 (109)
Q Consensus 1 er~~~~~~F~~g~~~iLV~T~~~~~Gldi~~v~~Vi~~d~p~~~~~y~qr~GR~gR~g~~~~~~~~~~~~~ 71 (109)
+|++++++|++|+++|||||+++++|+|+|+|++||+||+|.+..+|+||+||+||.|..+.++.++...+
T Consensus 305 ~R~~~~~~F~~g~~~VlVAT~a~~~GID~p~V~~VI~~~~p~s~~~y~Qr~GRaGR~G~~g~~i~l~~~~D 375 (591)
T 2v1x_A 305 DKTTVHRKWSANEIQVVVATVAFGMGIDKPDVRFVIHHSMSKSMENYYQESGRAGRDDMKADCILYYGFGD 375 (591)
T ss_dssp HHHHHHHHHHTTSSSEEEECTTSCTTCCCSCEEEEEESSCCSSHHHHHHHHTTSCTTSSCEEEEEEECHHH
T ss_pred HHHHHHHHHHcCCCeEEEEechhhcCCCcccccEEEEeCCCCCHHHHHHHhccCCcCCCCceEEEEEChHH
Confidence 47899999999999999999999999999999999999999999999999999999999888888765443
No 24
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=99.77 E-value=5.1e-19 Score=127.86 Aligned_cols=70 Identities=29% Similarity=0.398 Sum_probs=64.7
Q ss_pred ChHHHHHHHhcCCccEEEEcCccccccccCCCCEEEEeCCCCCHHHHHHHHhhcccCCCceEEEEeccCc
Q psy16582 1 MDVQTMLSFNRGITNILVATDVLEEGIDIQSCNLVIKFDPPQHTRSYVQSKAFTVVRHKAEQILSQYPKS 70 (109)
Q Consensus 1 er~~~~~~F~~g~~~iLV~T~~~~~Gldi~~v~~Vi~~d~p~~~~~y~qr~GR~gR~g~~~~~~~~~~~~ 70 (109)
+|++++++|++|+.+|||||+++++|+|+|++++||++|+|++..+|+||+||+||.|+.+.++.++.+.
T Consensus 276 ~r~~~~~~f~~~~~~vlv~T~~~~~Gid~~~~~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~ 345 (367)
T 1hv8_A 276 QREKVIRLFKQKKIRILIATDVMSRGIDVNDLNCVINYHLPQNPESYMHRIGRTGRAGKKGKAISIINRR 345 (367)
T ss_dssp HHHHHHHHHHTTSSSEEEECTTHHHHCCCSCCSEEEESSCCSCHHHHHHHSTTTCCSSSCCEEEEEECTT
T ss_pred HHHHHHHHHHcCCCeEEEECChhhcCCCcccCCEEEEecCCCCHHHhhhcccccccCCCccEEEEEEcHH
Confidence 4788999999999999999999999999999999999999999999999999999999888877776543
No 25
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=99.77 E-value=1.6e-18 Score=128.66 Aligned_cols=68 Identities=21% Similarity=0.292 Sum_probs=61.3
Q ss_pred HHHHhcCCccEEEE----cCccccccccCC-CCEEEEeCCC--CCHHHHHHHHhhcccCC----CceEEEEeccCchHHH
Q psy16582 6 MLSFNRGITNILVA----TDVLEEGIDIQS-CNLVIKFDPP--QHTRSYVQSKAFTVVRH----KAEQILSQYPKSERYL 74 (109)
Q Consensus 6 ~~~F~~g~~~iLV~----T~~~~~Gldi~~-v~~Vi~~d~p--~~~~~y~qr~GR~gR~g----~~~~~~~~~~~~~~~~ 74 (109)
+++|++|+++|||| |+++++|+|+|+ |++||+||+| .+..+|+||+||+||.| +.|.++.++ .+...+
T Consensus 290 ~~~f~~g~~~vLvat~s~T~~~~~GiDip~~v~~VI~~~~p~~~~~~~y~qr~GR~gR~g~~~~~~g~~i~~~-~~~~~~ 368 (414)
T 3oiy_A 290 FEDFKVGKINILIGVQAYYGKLTRGVDLPERIKYVIFWGTPSGPDVYTYIQASGRSSRILNGVLVKGVSVIFE-EDEEIF 368 (414)
T ss_dssp HHHHHTTSCSEEEEECCTTCCCCCCCCCTTTCCEEEEESCCTTTCHHHHHHHHGGGCCEETTEECCEEEEEEC-CCHHHH
T ss_pred HHHHhCCCCeEEEEecCcCchhhccCccccccCEEEEECCCCCCCHHHHHHHhCccccCCCCCCcceEEEEEE-ccHHHH
Confidence 99999999999999 999999999999 9999999999 99999999999999987 467888877 444443
No 26
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=99.76 E-value=1.7e-19 Score=136.65 Aligned_cols=70 Identities=27% Similarity=0.399 Sum_probs=52.8
Q ss_pred ChHHHHHHHhc-CCccEEEEcCccccccccCCCCEEEEeCCCCCHHHHHHHHhhcccCCCceEEEEeccCchH
Q psy16582 1 MDVQTMLSFNR-GITNILVATDVLEEGIDIQSCNLVIKFDPPQHTRSYVQSKAFTVVRHKAEQILSQYPKSER 72 (109)
Q Consensus 1 er~~~~~~F~~-g~~~iLV~T~~~~~Gldi~~v~~Vi~~d~p~~~~~y~qr~GR~gR~g~~~~~~~~~~~~~~ 72 (109)
+|.+++++|++ |+++|||||+++++|+|+|+|++||+||+|+++.+|+||+|| ||. +.+.++.++.+.+.
T Consensus 439 ~R~~~~~~F~~~g~~~vLvaT~~~~~GlDlp~v~~VI~~d~p~s~~~~~Qr~GR-gR~-~~g~~~~l~~~~~~ 509 (555)
T 3tbk_A 439 AQKCVLEAFRASGDNNILIATSVADEGIDIAECNLVILYEYVGNVIKMIQTRGR-GRA-RDSKCFLLTSSADV 509 (555)
T ss_dssp -------------CCSEEEECCCTTCCEETTSCSEEEEESCCSSCCCEECSSCC-CTT-TSCEEEEEESCHHH
T ss_pred HHHHHHHHHhcCCCeeEEEEcchhhcCCccccCCEEEEeCCCCCHHHHHHhcCc-CcC-CCceEEEEEcCCCH
Confidence 57889999999 999999999999999999999999999999999999999999 888 77777777665444
No 27
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=99.76 E-value=1e-18 Score=136.97 Aligned_cols=58 Identities=31% Similarity=0.536 Sum_probs=52.8
Q ss_pred ChHHHHHHHhcCCccEEEEcCccccccccCCCCEEEEeCCCCCHHHHHHHHhhcccCC
Q psy16582 1 MDVQTMLSFNRGITNILVATDVLEEGIDIQSCNLVIKFDPPQHTRSYVQSKAFTVVRH 58 (109)
Q Consensus 1 er~~~~~~F~~g~~~iLV~T~~~~~Gldi~~v~~Vi~~d~p~~~~~y~qr~GR~gR~g 58 (109)
+|.+++++|++|+++|||||+++++|||+|+|++||+||+|+++.+|+||+||+||.|
T Consensus 452 eR~~~~~~F~~g~~~VLVaT~~~~~GIDip~v~~VI~~d~p~s~~~~~Qr~GRArr~g 509 (699)
T 4gl2_A 452 EQKEVISKFRTGKINLLIATTVAEEGLDIKECNIVIRYGLVTNEIAMVQARGRARADE 509 (699)
T ss_dssp HHHHHHHHHCC---CCSEEECSCCTTSCCCSCCCCEEESCCCCHHHHHHHHTTSCSSS
T ss_pred HHHHHHHHHhcCCCcEEEEccccccCCccccCCEEEEeCCCCCHHHHHHHcCCCCCCC
Confidence 4789999999999999999999999999999999999999999999999999988776
No 28
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=99.74 E-value=9.8e-20 Score=137.59 Aligned_cols=69 Identities=25% Similarity=0.370 Sum_probs=0.0
Q ss_pred ChHHHHHHHhcCCccEEEEcCccccccccCCCCEEEEeCCCC------CHHHHHHHHhhcccCCCceEEEEeccC
Q psy16582 1 MDVQTMLSFNRGITNILVATDVLEEGIDIQSCNLVIKFDPPQ------HTRSYVQSKAFTVVRHKAEQILSQYPK 69 (109)
Q Consensus 1 er~~~~~~F~~g~~~iLV~T~~~~~Gldi~~v~~Vi~~d~p~------~~~~y~qr~GR~gR~g~~~~~~~~~~~ 69 (109)
+|.++++.|++|+++|||||+++++|+|+|++++||+||+|. +..+|+||+||+||.|+.|.++.++..
T Consensus 371 ~R~~~~~~f~~g~~~iLv~T~~~~~GlDip~v~~VI~~d~p~~~~~~~s~~~~~Qr~GRagR~g~~G~~i~~~~~ 445 (479)
T 3fmp_B 371 QRAAVIERFREGKEKVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDS 445 (479)
T ss_dssp ---------------------------------------------------------------------------
T ss_pred HHHHHHHHHHcCCCcEEEEccccccCCccccCCEEEEecCCCCCccCCCHHHHHHHhcccccCCCCceEEEEEcC
Confidence 478899999999999999999999999999999999999994 668999999999999998888887644
No 29
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=99.74 E-value=2.9e-18 Score=126.75 Aligned_cols=66 Identities=27% Similarity=0.372 Sum_probs=61.3
Q ss_pred ChHHHHHHHhcCCccEEEEcCccccccccCCCCEEEEeCCCCCHHHHHHHHhhcccCCCceEEEEec
Q psy16582 1 MDVQTMLSFNRGITNILVATDVLEEGIDIQSCNLVIKFDPPQHTRSYVQSKAFTVVRHKAEQILSQY 67 (109)
Q Consensus 1 er~~~~~~F~~g~~~iLV~T~~~~~Gldi~~v~~Vi~~d~p~~~~~y~qr~GR~gR~g~~~~~~~~~ 67 (109)
+|++++++|++|+++|||||+++++|+|+|++++||+||+|+++..|+||+||+||.|. +.++.++
T Consensus 407 ~r~~~~~~F~~~~~~vLv~T~~~~~Gldl~~~~~Vi~~d~~~~~~~~~Qr~GR~~R~g~-g~~~~l~ 472 (494)
T 1wp9_A 407 EQKLILDEFARGEFNVLVATSVGEEGLDVPEVDLVVFYEPVPSAIRSIQRRGRTGRHMP-GRVIILM 472 (494)
T ss_dssp HHHHHHHHHHHTSCSEEEECGGGGGGGGSTTCCEEEESSCCHHHHHHHHHHTTSCSCCC-SEEEEEE
T ss_pred HHHHHHHHHhcCCceEEEECCccccCCCchhCCEEEEeCCCCCHHHHHHHHhhccCCCC-ceEEEEE
Confidence 47899999999999999999999999999999999999999999999999999999998 5555554
No 30
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=99.73 E-value=2.5e-18 Score=137.42 Aligned_cols=68 Identities=24% Similarity=0.358 Sum_probs=37.5
Q ss_pred ChHHHHHHHhc-CCccEEEEcCccccccccCCCCEEEEeCCCCCHHHHHHHHhhcccCCCceEEEEeccCc
Q psy16582 1 MDVQTMLSFNR-GITNILVATDVLEEGIDIQSCNLVIKFDPPQHTRSYVQSKAFTVVRHKAEQILSQYPKS 70 (109)
Q Consensus 1 er~~~~~~F~~-g~~~iLV~T~~~~~Gldi~~v~~Vi~~d~p~~~~~y~qr~GR~gR~g~~~~~~~~~~~~ 70 (109)
+|.+++++|++ |+++|||||+++++|+|+|+|++||+||+|+++.+|+||+|| ||. +.+.++.++...
T Consensus 681 eR~~~l~~F~~~g~~~vLVaT~~~~~GIDlp~v~~VI~yd~p~s~~~~iQr~GR-GR~-~~g~~i~l~~~~ 749 (797)
T 4a2q_A 681 SQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGR-GRA-AGSKCILVTSKT 749 (797)
T ss_dssp -------------CCSEEEEECC-------CCCSEEEEESCCSCHHHHHTC---------CCCEEEEECCH
T ss_pred HHHHHHHHhhccCCceEEEEcCchhcCCCchhCCEEEEeCCCCCHHHHHHhcCC-CCC-CCceEEEEEeCC
Confidence 57899999999 999999999999999999999999999999999999999999 998 666666665543
No 31
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=99.73 E-value=3.7e-18 Score=129.15 Aligned_cols=70 Identities=14% Similarity=0.006 Sum_probs=62.4
Q ss_pred ChHHHHHHHhcCCccEEEEcCccccccccCCCCEEEEeC--------------------CCCCHHHHHHHHhhcccCCC-
Q psy16582 1 MDVQTMLSFNRGITNILVATDVLEEGIDIQSCNLVIKFD--------------------PPQHTRSYVQSKAFTVVRHK- 59 (109)
Q Consensus 1 er~~~~~~F~~g~~~iLV~T~~~~~Gldi~~v~~Vi~~d--------------------~p~~~~~y~qr~GR~gR~g~- 59 (109)
++++++++|++|+++|||||+++++|+|+|+ ++||||| +|.+..+|+||+||+||.|.
T Consensus 222 ~~~~~~~~f~~g~~~vLVaT~v~~~GiDip~-~~VI~~~~~~~~~~d~~~~~~l~~~~~~p~s~~~y~Qr~GRaGR~g~~ 300 (451)
T 2jlq_A 222 TFDTEYPKTKLTDWDFVVTTDISEMGANFRA-GRVIDPRRCLKPVILTDGPERVILAGPIPVTPASAAQRRGRIGRNPAQ 300 (451)
T ss_dssp THHHHGGGGGSSCCSEEEECGGGGSSCCCCC-SEEEECCEEEEEEEECSSSCEEEEEEEEECCHHHHHHHHTTSSCCTTC
T ss_pred HHHHHHHhhccCCceEEEECCHHHhCcCCCC-CEEEECCCcccccccccccceeeecccccCCHHHHHHhccccCCCCCC
Confidence 3568899999999999999999999999999 9999999 99999999999999999996
Q ss_pred ceEEEEeccCch
Q psy16582 60 AEQILSQYPKSE 71 (109)
Q Consensus 60 ~~~~~~~~~~~~ 71 (109)
++.++.++..++
T Consensus 301 ~g~~~~~~~~~~ 312 (451)
T 2jlq_A 301 EDDQYVFSGDPL 312 (451)
T ss_dssp CCEEEEECSCCC
T ss_pred CccEEEEeCCch
Confidence 667776664433
No 32
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=99.73 E-value=2.7e-19 Score=130.78 Aligned_cols=71 Identities=25% Similarity=0.409 Sum_probs=0.0
Q ss_pred ChHHHHHHHhcCCccEEEEcCccccccccCCCCEEEEeCCCCCHHHHHHHHhhcccCCCceEEEEeccCch
Q psy16582 1 MDVQTMLSFNRGITNILVATDVLEEGIDIQSCNLVIKFDPPQHTRSYVQSKAFTVVRHKAEQILSQYPKSE 71 (109)
Q Consensus 1 er~~~~~~F~~g~~~iLV~T~~~~~Gldi~~v~~Vi~~d~p~~~~~y~qr~GR~gR~g~~~~~~~~~~~~~ 71 (109)
+|++++++|++|+.+|||||+++++|+|+|++++||+||+|++..+|+||+||+||.|+.+.++.++.+++
T Consensus 297 ~r~~~~~~f~~~~~~vlv~T~~~~~Gldi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~ 367 (394)
T 1fuu_A 297 ERDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTNED 367 (394)
T ss_dssp -----------------------------------------------------------------------
T ss_pred HHHHHHHHHHCCCCcEEEECChhhcCCCcccCCEEEEeCCCCCHHHHHHHcCcccCCCCCceEEEEEchhH
Confidence 47889999999999999999999999999999999999999999999999999999998888888765543
No 33
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=99.73 E-value=1.1e-18 Score=136.64 Aligned_cols=70 Identities=27% Similarity=0.380 Sum_probs=38.4
Q ss_pred ChHHHHHHHhc-CCccEEEEcCccccccccCCCCEEEEeCCCCCHHHHHHHHhhcccCCCceEEEEeccCchH
Q psy16582 1 MDVQTMLSFNR-GITNILVATDVLEEGIDIQSCNLVIKFDPPQHTRSYVQSKAFTVVRHKAEQILSQYPKSER 72 (109)
Q Consensus 1 er~~~~~~F~~-g~~~iLV~T~~~~~Gldi~~v~~Vi~~d~p~~~~~y~qr~GR~gR~g~~~~~~~~~~~~~~ 72 (109)
+|++++++|++ |+++|||||+++++|+|+|+|++||+||+|++..+|+||+|| ||. .++.++.++...+.
T Consensus 448 eR~~v~~~F~~~g~~~vLVaT~v~~~GiDip~v~~VI~~d~p~s~~~~~Qr~GR-GR~-~~g~~~~l~~~~~~ 518 (696)
T 2ykg_A 448 AQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRA-RGSKCFLLTSNAGV 518 (696)
T ss_dssp -------------CCSCSEEEESSCCC---CCCSEEEEESCC--CCCC-----------CCCEEEEEESCHHH
T ss_pred HHHHHHHHHHhcCCccEEEEechhhcCCcCccCCEEEEeCCCCCHHHHHHhhcc-CcC-CCceEEEEecCCCH
Confidence 57899999998 999999999999999999999999999999999999999999 998 56677777665443
No 34
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=99.72 E-value=4e-18 Score=128.78 Aligned_cols=66 Identities=12% Similarity=0.057 Sum_probs=53.0
Q ss_pred ChHHHHHHHhcCCccEEEEcCccccccccCCCCEEEE-------------------eCCCCCHHHHHHHHhhcccC-CCc
Q psy16582 1 MDVQTMLSFNRGITNILVATDVLEEGIDIQSCNLVIK-------------------FDPPQHTRSYVQSKAFTVVR-HKA 60 (109)
Q Consensus 1 er~~~~~~F~~g~~~iLV~T~~~~~Gldi~~v~~Vi~-------------------~d~p~~~~~y~qr~GR~gR~-g~~ 60 (109)
+|++++++|++|+++|||||+++++|+|+| +++||+ ||.|.+..+|+||+||+||. |..
T Consensus 211 ~R~~~~~~F~~g~~~vLVaT~v~e~GiDip-v~~VI~~g~~~~pv~~~~~~~~vi~~~~p~~~~~~~Qr~GR~GR~g~~~ 289 (440)
T 1yks_A 211 TFEREYPTIKQKKPDFILATDIAEMGANLC-VERVLDCRTAFKPVLVDEGRKVAIKGPLRISASSAAQRRGRIGRNPNRD 289 (440)
T ss_dssp SCC--------CCCSEEEESSSTTCCTTCC-CSEEEECCEEEEEEEETTTTEEEEEEEEECCHHHHHHHHTTSSCCTTCC
T ss_pred hHHHHHhhhcCCCceEEEECChhheeeccC-ceEEEeCCccceeeecccccceeeccccccCHHHHHHhccccCCCCCCC
Confidence 467899999999999999999999999999 999986 99999999999999999997 577
Q ss_pred eEEEEec
Q psy16582 61 EQILSQY 67 (109)
Q Consensus 61 ~~~~~~~ 67 (109)
+.++.++
T Consensus 290 g~~~~l~ 296 (440)
T 1yks_A 290 GDSYYYS 296 (440)
T ss_dssp CEEEEEC
T ss_pred ceEEEEe
Confidence 7877774
No 35
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=99.71 E-value=2e-17 Score=130.59 Aligned_cols=71 Identities=21% Similarity=0.339 Sum_probs=63.2
Q ss_pred ChHHHHHHHhcCCccEEEEcCccccccccCCCCEEEEeCC-----CCCHHHHHHHHhhcccCCCceEEEEeccCchH
Q psy16582 1 MDVQTMLSFNRGITNILVATDVLEEGIDIQSCNLVIKFDP-----PQHTRSYVQSKAFTVVRHKAEQILSQYPKSER 72 (109)
Q Consensus 1 er~~~~~~F~~g~~~iLV~T~~~~~Gldi~~v~~Vi~~d~-----p~~~~~y~qr~GR~gR~g~~~~~~~~~~~~~~ 72 (109)
+|.+++++|++|+++|||||+++++|+|+|+|++||++|. |.+..+|+||+||+||. ..|.++.++...+.
T Consensus 483 ~R~~~l~~f~~g~~~VLVaT~~l~~GlDip~v~lVi~~d~d~~G~p~s~~~~iQr~GRagR~-~~G~~i~~~~~~~~ 558 (661)
T 2d7d_A 483 ERIEIIRDLRLGKYDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARN-AEGRVIMYADKITK 558 (661)
T ss_dssp HHHHHHHHHHHTSCSEEEESCCCSTTCCCTTEEEEEETTTTCCTTTTSHHHHHHHHHTTTTS-TTCEEEEECSSCCH
T ss_pred HHHHHHHHHhcCCeEEEEecchhhCCcccCCCCEEEEeCcccccCCCCHHHHHHHhCcccCC-CCCEEEEEEeCCCH
Confidence 4789999999999999999999999999999999999997 99999999999999998 56677776655433
No 36
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=99.71 E-value=8.7e-18 Score=136.67 Aligned_cols=67 Identities=24% Similarity=0.356 Sum_probs=37.1
Q ss_pred ChHHHHHHHhc-CCccEEEEcCccccccccCCCCEEEEeCCCCCHHHHHHHHhhcccCCCceEEEEeccC
Q psy16582 1 MDVQTMLSFNR-GITNILVATDVLEEGIDIQSCNLVIKFDPPQHTRSYVQSKAFTVVRHKAEQILSQYPK 69 (109)
Q Consensus 1 er~~~~~~F~~-g~~~iLV~T~~~~~Gldi~~v~~Vi~~d~p~~~~~y~qr~GR~gR~g~~~~~~~~~~~ 69 (109)
+|.+++++|++ |+++|||||+++++|||+|+|++||+||+|+++.+|+||+|| ||. ..+.++.++..
T Consensus 681 eR~~il~~Fr~~g~~~VLVaT~~~~eGIDlp~v~~VI~yD~p~s~~~~iQr~GR-GR~-~~g~vi~Li~~ 748 (936)
T 4a2w_A 681 SQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGR-GRA-AGSKCILVTSK 748 (936)
T ss_dssp -------------CCSEEEEECC------CCCCSEEEEESCCSCSHHHHCC---------CCCEEEEESC
T ss_pred HHHHHHHHhhccCCeeEEEEeCchhcCCcchhCCEEEEeCCCCCHHHHHHhcCC-CCC-CCCEEEEEEeC
Confidence 58899999999 999999999999999999999999999999999999999999 998 44555555544
No 37
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=99.70 E-value=2.4e-17 Score=130.18 Aligned_cols=71 Identities=20% Similarity=0.257 Sum_probs=63.0
Q ss_pred ChHHHHHHHhcCCccEEEEcCccccccccCCCCEEEEeCC-----CCCHHHHHHHHhhcccCCCceEEEEeccCchH
Q psy16582 1 MDVQTMLSFNRGITNILVATDVLEEGIDIQSCNLVIKFDP-----PQHTRSYVQSKAFTVVRHKAEQILSQYPKSER 72 (109)
Q Consensus 1 er~~~~~~F~~g~~~iLV~T~~~~~Gldi~~v~~Vi~~d~-----p~~~~~y~qr~GR~gR~g~~~~~~~~~~~~~~ 72 (109)
+|.+++++|++|+++|||||+++++|+|+|+|++||++|. |.+..+|+||+||+||.+ .|.++.++...+.
T Consensus 477 ~R~~~~~~f~~g~~~VLvaT~~l~~GlDip~v~lVI~~d~d~~G~p~s~~~~iQr~GRagR~~-~G~~i~~~~~~~~ 552 (664)
T 1c4o_A 477 KRQALIRDLRLGHYDCLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNA-RGEVWLYADRVSE 552 (664)
T ss_dssp HHHHHHHHHHTTSCSEEEESCCCCTTCCCTTEEEEEETTTTSCSGGGSHHHHHHHHGGGTTST-TCEEEEECSSCCH
T ss_pred HHHHHHHHhhcCCceEEEccChhhcCccCCCCCEEEEeCCcccCCCCCHHHHHHHHCccCcCC-CCEEEEEEcCCCH
Confidence 4789999999999999999999999999999999999997 999999999999999996 5566666655443
No 38
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=99.69 E-value=6.6e-18 Score=128.12 Aligned_cols=68 Identities=15% Similarity=0.071 Sum_probs=57.8
Q ss_pred ChHHHHHHHhcCCccEEEEcCccccccccCCCCEEEE--------------------eCCCCCHHHHHHHHhhcccCCC-
Q psy16582 1 MDVQTMLSFNRGITNILVATDVLEEGIDIQSCNLVIK--------------------FDPPQHTRSYVQSKAFTVVRHK- 59 (109)
Q Consensus 1 er~~~~~~F~~g~~~iLV~T~~~~~Gldi~~v~~Vi~--------------------~d~p~~~~~y~qr~GR~gR~g~- 59 (109)
+|++++++|++|+.+|||||+++++|+|+|+ ++||+ ||+|.+..+|+||+||+||.|.
T Consensus 224 ~R~~~~~~f~~g~~~iLVaT~v~~~GiDip~-~~VI~~G~~~~~~~~~~~~~~~~~~~d~p~s~~~~~QR~GRaGR~g~~ 302 (459)
T 2z83_A 224 SYDTEYPKCKNGDWDFVITTDISEMGANFGA-SRVIDCRKSVKPTILEEGEGRVILGNPSPITSASAAQRRGRVGRNPNQ 302 (459)
T ss_dssp CCCCCGGGSSSCCCSEEEESSCC---CCCSC-SEEEECCEECCEEEECSSSCEEEECSCEECCHHHHHHHHTTSSCCTTC
T ss_pred HHHHHHhhccCCCceEEEECChHHhCeecCC-CEEEECCcccccccccccccccccccCCCCCHHHHHHhccccCCCCCC
Confidence 3566788999999999999999999999999 99999 7899999999999999999986
Q ss_pred ceEEEEeccC
Q psy16582 60 AEQILSQYPK 69 (109)
Q Consensus 60 ~~~~~~~~~~ 69 (109)
.|.++.++..
T Consensus 303 ~G~~~~~~~~ 312 (459)
T 2z83_A 303 VGDEYHYGGA 312 (459)
T ss_dssp CCEEEEECSC
T ss_pred CCeEEEEEcc
Confidence 7777776544
No 39
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=99.69 E-value=2.3e-17 Score=129.48 Aligned_cols=67 Identities=13% Similarity=-0.006 Sum_probs=60.2
Q ss_pred ChHHHHHHHhcCCccEEEEcCccccccccCCCCEE--------------------EEeCCCCCHHHHHHHHhhcccCCC-
Q psy16582 1 MDVQTMLSFNRGITNILVATDVLEEGIDIQSCNLV--------------------IKFDPPQHTRSYVQSKAFTVVRHK- 59 (109)
Q Consensus 1 er~~~~~~F~~g~~~iLV~T~~~~~Gldi~~v~~V--------------------i~~d~p~~~~~y~qr~GR~gR~g~- 59 (109)
+|++++++|++|+.+||||||++++|+|+| +++| |+||+|.+..+|+||+||+||.|.
T Consensus 389 ~R~~~l~~F~~g~~~VLVaTdv~~rGiDi~-v~~VId~g~~~~P~~~~~~~~~~~i~~d~P~s~~~yiQR~GRaGR~g~~ 467 (618)
T 2whx_A 389 TFDTEYPKTKLTDWDFVVTTDISEMGANFR-AGRVIDPRRCLKPVILTDGPERVILAGPIPVTPASAAQRRGRIGRNPAQ 467 (618)
T ss_dssp THHHHTTHHHHSCCSEEEECGGGGTTCCCC-CSEEEECCEEEEEEEECSSSCEEEEEEEEECCHHHHHHHHTTSSCCTTC
T ss_pred HHHHHHHhhcCCCcEEEEECcHHHcCcccC-ceEEEECcceecceecccCCCceEEcccccCCHHHHHHhccccCCCCCC
Confidence 578899999999999999999999999997 9888 888899999999999999999964
Q ss_pred ceEEEEecc
Q psy16582 60 AEQILSQYP 68 (109)
Q Consensus 60 ~~~~~~~~~ 68 (109)
.+.++.++.
T Consensus 468 ~G~ai~l~~ 476 (618)
T 2whx_A 468 EDDQYVFSG 476 (618)
T ss_dssp CCEEEEECS
T ss_pred CCeEEEEcc
Confidence 667777653
No 40
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=99.69 E-value=6.9e-18 Score=129.13 Aligned_cols=69 Identities=26% Similarity=0.398 Sum_probs=49.4
Q ss_pred ChHHHHHHHhcCCccEEEEcCccccccccCCCCEEEEeCCC------CCHHHHHHHHhhcccCCCceEEEEeccC
Q psy16582 1 MDVQTMLSFNRGITNILVATDVLEEGIDIQSCNLVIKFDPP------QHTRSYVQSKAFTVVRHKAEQILSQYPK 69 (109)
Q Consensus 1 er~~~~~~F~~g~~~iLV~T~~~~~Gldi~~v~~Vi~~d~p------~~~~~y~qr~GR~gR~g~~~~~~~~~~~ 69 (109)
+|++++++|++|+++|||||+++++|+|+|++++||++|+| .+..+|+||+||+||.|..+.++.++..
T Consensus 395 ~R~~il~~f~~g~~~VLVaT~~l~~GiDip~v~~VI~~~~p~~~~~~~s~~~~~Qr~GRagR~g~~g~~i~l~~~ 469 (508)
T 3fho_A 395 QRDAIMDSFRVGTSKVLVTTNVIARGIDVSQVNLVVNYDMPLDQAGRPDPQTYLHRIGRTGRFGRVGVSINFVHD 469 (508)
T ss_dssp TTGGGTHHHHSSSCCCCEECC-----CCCTTCCEEEC----CC-----CTHHHHHTTSCCC-----CEEEEEECT
T ss_pred HHHHHHHHHHCCCCeEEEeCChhhcCCCccCCCEEEEECCCCcccCCCCHHHHHHHhhhcCCCCCCcEEEEEEeC
Confidence 47788999999999999999999999999999999999999 8899999999999999988888777643
No 41
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=99.69 E-value=2.7e-17 Score=130.21 Aligned_cols=66 Identities=14% Similarity=0.063 Sum_probs=61.1
Q ss_pred ChHHHHHHHhcCCccEEEEcCccccccccCCCCEEEE--------------------eCCCCCHHHHHHHHhhcccC-CC
Q psy16582 1 MDVQTMLSFNRGITNILVATDVLEEGIDIQSCNLVIK--------------------FDPPQHTRSYVQSKAFTVVR-HK 59 (109)
Q Consensus 1 er~~~~~~F~~g~~~iLV~T~~~~~Gldi~~v~~Vi~--------------------~d~p~~~~~y~qr~GR~gR~-g~ 59 (109)
+|++++++|++|+++|||||+++++|+|+| +++||+ ||+|.+..+|+||+||+||. |.
T Consensus 444 eR~~v~~~F~~g~~~VLVaTdv~e~GIDip-v~~VI~~g~~~~p~vi~da~~r~~ll~d~P~s~~~y~Qr~GRaGR~~g~ 522 (673)
T 2wv9_A 444 SYDTEYPKCKNGDWDFVITTDISEMGANFG-ASRVIDCRKSVKPTILDEGEGRVILSVPSAITSASAAQRRGRVGRNPSQ 522 (673)
T ss_dssp SHHHHGGGGGTCCCSEEEECGGGGTTCCCC-CSEEEECCEECCEEEECSTTCEEEECCSEECCHHHHHHHHTTSSCCSSC
T ss_pred HHHHHHHHHHCCCceEEEECchhhcceeeC-CcEEEECCCcccceeeecccccceecccCCCCHHHHHHHhhccCCCCCC
Confidence 588999999999999999999999999999 999998 67999999999999999998 67
Q ss_pred ceEEEEec
Q psy16582 60 AEQILSQY 67 (109)
Q Consensus 60 ~~~~~~~~ 67 (109)
.+.+++++
T Consensus 523 ~G~ai~l~ 530 (673)
T 2wv9_A 523 IGDEYHYG 530 (673)
T ss_dssp CCEEEEEC
T ss_pred CCEEEEEE
Confidence 87877774
No 42
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=99.67 E-value=3.8e-17 Score=131.08 Aligned_cols=68 Identities=24% Similarity=0.276 Sum_probs=63.8
Q ss_pred ChHHHHHHHhcCCccEEEEcCccccccccCCCCEEEEeCCCC-CHHHHHHHHhhcccCCCceEEEEecc
Q psy16582 1 MDVQTMLSFNRGITNILVATDVLEEGIDIQSCNLVIKFDPPQ-HTRSYVQSKAFTVVRHKAEQILSQYP 68 (109)
Q Consensus 1 er~~~~~~F~~g~~~iLV~T~~~~~Gldi~~v~~Vi~~d~p~-~~~~y~qr~GR~gR~g~~~~~~~~~~ 68 (109)
+|++++++|++|+++|||||+++++|+|+|++++||++|.|. +...|.||+||+||.|..+.++.++.
T Consensus 627 eR~~v~~~F~~G~~~ILVaT~vie~GIDiP~v~~VIi~d~~r~~l~~l~Qr~GRaGR~g~~g~~ill~~ 695 (780)
T 1gm5_A 627 EKDRVMLEFAEGRYDILVSTTVIEVGIDVPRANVMVIENPERFGLAQLHQLRGRVGRGGQEAYCFLVVG 695 (780)
T ss_dssp CSHHHHHHHTTTSSSBCCCSSCCCSCSCCTTCCEEEBCSCSSSCTTHHHHHHHTSCCSSTTCEEECCCC
T ss_pred HHHHHHHHHHCCCCeEEEECCCCCccccCCCCCEEEEeCCCCCCHHHHHHHhcccCcCCCCCEEEEEEC
Confidence 578999999999999999999999999999999999999996 78889999999999999888888765
No 43
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=99.66 E-value=4.4e-17 Score=122.77 Aligned_cols=60 Identities=23% Similarity=0.376 Sum_probs=57.4
Q ss_pred ChHHHHHHHhcCCccEEEEcCccccccccCCCCEEEEeCCCCCHHHHHHHHhhcccCCCc
Q psy16582 1 MDVQTMLSFNRGITNILVATDVLEEGIDIQSCNLVIKFDPPQHTRSYVQSKAFTVVRHKA 60 (109)
Q Consensus 1 er~~~~~~F~~g~~~iLV~T~~~~~Gldi~~v~~Vi~~d~p~~~~~y~qr~GR~gR~g~~ 60 (109)
+|++++++|++|+++|||||+++++|+|+|++++||++|+|++...|+||+||+||.|.+
T Consensus 382 ~R~~~~~~F~~g~~~vLv~T~~~~~Gldlp~~~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~ 441 (472)
T 2fwr_A 382 EREEILEGFRTGRFRAIVSSQVLDEGIDVPDANVGVIMSGSGSAREYIQRLGRILRPSKG 441 (472)
T ss_dssp HHHTHHHHHHHSSCSBCBCSSCCCSSSCSCCBSEEEEECCSSCCHHHHHHHHHSBCCCTT
T ss_pred HHHHHHHHHhCCCCCEEEEcCchhcCcccccCcEEEEECCCCCHHHHHHHHhhccCCCCC
Confidence 478899999999999999999999999999999999999999999999999999999855
No 44
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=99.65 E-value=1e-16 Score=120.70 Aligned_cols=66 Identities=11% Similarity=0.019 Sum_probs=57.9
Q ss_pred ChHHHHHHHhcCCccEEEEcCccccccccCCCCE-----------------EEEeCCCCCHHHHHHHHhhcccCCC-ceE
Q psy16582 1 MDVQTMLSFNRGITNILVATDVLEEGIDIQSCNL-----------------VIKFDPPQHTRSYVQSKAFTVVRHK-AEQ 62 (109)
Q Consensus 1 er~~~~~~F~~g~~~iLV~T~~~~~Gldi~~v~~-----------------Vi~~d~p~~~~~y~qr~GR~gR~g~-~~~ 62 (109)
+|++++++|++|+++|||||+++++|+|+| +.+ ||+++.|.+..+|+||+||+||.|. ++.
T Consensus 205 ~r~~~~~~f~~g~~~vLVaT~v~e~GiDip-~~~VI~~g~~~~~v~d~~~~vi~~~~p~~~~~~~Qr~GR~GR~g~~~~~ 283 (431)
T 2v6i_A 205 TFESEYPKCKSEKWDFVITTDISEMGANFK-ADRVIDPRKTIKPILLDGRVSMQGPIAITPASAAQRRGRIGRNPEKLGD 283 (431)
T ss_dssp THHHHTTHHHHSCCSEEEECGGGGTSCCCC-CSEEEECCEEEEEEEETTEEEEEEEEECCHHHHHHHHTTSSCCTTCCCC
T ss_pred cHHHHHHhhcCCCCeEEEECchHHcCcccC-CcEEEecCccccceecccceeecccccCCHHHHHHhhhccCCCCCCCCe
Confidence 578899999999999999999999999999 654 6889999999999999999999984 555
Q ss_pred EEEec
Q psy16582 63 ILSQY 67 (109)
Q Consensus 63 ~~~~~ 67 (109)
++++.
T Consensus 284 ~~~~~ 288 (431)
T 2v6i_A 284 IYAYS 288 (431)
T ss_dssp EEEEC
T ss_pred EEEEc
Confidence 55554
No 45
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=99.64 E-value=1e-16 Score=130.80 Aligned_cols=63 Identities=17% Similarity=0.161 Sum_probs=59.3
Q ss_pred ChHHHHHHHhcCC--ccEEEEcCccccccccCCCCEEEEeCCCCCHHHHHHHHhhcccCCCceEE
Q psy16582 1 MDVQTMLSFNRGI--TNILVATDVLEEGIDIQSCNLVIKFDPPQHTRSYVQSKAFTVVRHKAEQI 63 (109)
Q Consensus 1 er~~~~~~F~~g~--~~iLV~T~~~~~Gldi~~v~~Vi~~d~p~~~~~y~qr~GR~gR~g~~~~~ 63 (109)
+|++++++|++|+ ++|||||+++++|+|+|++++||+||+|+++..|+|++||+||.|+.+.+
T Consensus 542 ~R~~~l~~F~~g~~~~~vLvaT~v~~~GlDl~~~~~VI~~d~p~~~~~~~Q~~GR~~R~Gq~~~v 606 (968)
T 3dmq_A 542 ERDRAAAWFAEEDTGAQVLLCSEIGSEGRNFQFASHMVMFDLPFNPDLLEQRIGRLDRIGQAHDI 606 (968)
T ss_dssp HHHHHHHHHHSTTSSCEEEECSCCTTCSSCCTTCCEEECSSCCSSHHHHHHHHHTTSCSSSCSCC
T ss_pred HHHHHHHHHhCCCCcccEEEecchhhcCCCcccCcEEEEecCCCCHHHHHHHhhccccCCCCceE
Confidence 4789999999998 99999999999999999999999999999999999999999999976643
No 46
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=99.63 E-value=4.7e-16 Score=123.19 Aligned_cols=69 Identities=20% Similarity=0.234 Sum_probs=62.0
Q ss_pred ChHHHHHHHhc--CCccEEEEcCccccccccCCCCEEEEeCC--------------CCCHHHHHHHHhhcccCCCc---e
Q psy16582 1 MDVQTMLSFNR--GITNILVATDVLEEGIDIQSCNLVIKFDP--------------PQHTRSYVQSKAFTVVRHKA---E 61 (109)
Q Consensus 1 er~~~~~~F~~--g~~~iLV~T~~~~~Gldi~~v~~Vi~~d~--------------p~~~~~y~qr~GR~gR~g~~---~ 61 (109)
+|+++++.|++ |+++|||||+++++|+|+ +|++||++|+ |.+..+|+||+||+||.|.. |
T Consensus 358 ~R~~~~~~F~~~~g~~~VLVATdi~e~GlDi-~v~~VI~~~~~k~~~~~~G~~~~~p~s~~~~~QR~GRAGR~g~~g~~G 436 (677)
T 3rc3_A 358 TKLAQAKKFNDPNDPCKILVATDAIGMGLNL-SIRRIIFYSLIKPSINEKGERELEPITTSQALQIAGRAGRFSSRFKEG 436 (677)
T ss_dssp HHHHHHHHHHCTTSSCCEEEECGGGGSSCCC-CBSEEEESCSBC-----------CBCCHHHHHHHHTTBTCTTSSCSSE
T ss_pred HHHHHHHHHHccCCCeEEEEeCcHHHCCcCc-CccEEEECCccccccccCCccccccCCHHHHHHHhcCCCCCCCCCCCE
Confidence 36789999999 899999999999999999 9999999999 88999999999999999853 7
Q ss_pred EEEEeccCc
Q psy16582 62 QILSQYPKS 70 (109)
Q Consensus 62 ~~~~~~~~~ 70 (109)
.++.+++.+
T Consensus 437 ~v~~l~~~d 445 (677)
T 3rc3_A 437 EVTTMNHED 445 (677)
T ss_dssp EEEESSTTH
T ss_pred EEEEEecch
Confidence 777776655
No 47
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=99.62 E-value=6.5e-16 Score=127.04 Aligned_cols=39 Identities=18% Similarity=0.282 Sum_probs=32.4
Q ss_pred HHHHHHHhcCCccEEEE----cCccccccccCCC-CEEEEeCCC
Q psy16582 3 VQTMLSFNRGITNILVA----TDVLEEGIDIQSC-NLVIKFDPP 41 (109)
Q Consensus 3 ~~~~~~F~~g~~~iLV~----T~~~~~Gldi~~v-~~Vi~~d~p 41 (109)
++++++|++|+++|||| |+++++|+|+|+| ++||+||+|
T Consensus 309 ~~~l~~F~~G~~~VLVaTas~Tdv~~rGIDip~VI~~VI~~~~P 352 (1054)
T 1gku_B 309 KGDYEKFVEGEIDHLIGTAHYYGTLVRGLDLPERIRFAVFVGCP 352 (1054)
T ss_dssp SHHHHHHHHTSCSEEEEECC------CCSCCTTTCCEEEEESCC
T ss_pred HHHHHHHHcCCCcEEEEecCCCCeeEeccccCCcccEEEEeCCC
Confidence 47899999999999999 9999999999996 999999999
No 48
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=99.62 E-value=2.7e-16 Score=112.56 Aligned_cols=62 Identities=18% Similarity=0.136 Sum_probs=45.0
Q ss_pred ChHHHHHHHhcC-Ccc-EEEEcCccccccccCCCCEEEEeCCCCCHHHHHHHHhhcccCCCceE
Q psy16582 1 MDVQTMLSFNRG-ITN-ILVATDVLEEGIDIQSCNLVIKFDPPQHTRSYVQSKAFTVVRHKAEQ 62 (109)
Q Consensus 1 er~~~~~~F~~g-~~~-iLV~T~~~~~Gldi~~v~~Vi~~d~p~~~~~y~qr~GR~gR~g~~~~ 62 (109)
+|++++++|++| .++ +|++|+++++|+|++.+++||+||+||++..|.||+||++|.|....
T Consensus 151 ~R~~~i~~F~~~~~~~v~L~st~~~g~Glnl~~a~~VI~~d~~wnp~~~~Q~~gR~~R~Gq~~~ 214 (271)
T 1z5z_A 151 ERDDIISKFQNNPSVKFIVLSVKAGGFGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRN 214 (271)
T ss_dssp HHHHHHHHHHHCTTCCEEEEECCTTCCCCCCTTCSEEEECSCCSCTTTC--------------C
T ss_pred HHHHHHHHhcCCCCCCEEEEehhhhcCCcCcccCCEEEEECCCCChhHHHHHHHhccccCCCCc
Confidence 478999999998 788 78999999999999999999999999999999999999999996543
No 49
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=99.62 E-value=7.4e-16 Score=123.93 Aligned_cols=60 Identities=13% Similarity=0.072 Sum_probs=54.0
Q ss_pred CccEEEEcCccccccccC--------CCCEEEEeCCCCCHHHHHHHHhhcccCCCceEEEEeccCchH
Q psy16582 13 ITNILVATDVLEEGIDIQ--------SCNLVIKFDPPQHTRSYVQSKAFTVVRHKAEQILSQYPKSER 72 (109)
Q Consensus 13 ~~~iLV~T~~~~~Gldi~--------~v~~Vi~~d~p~~~~~y~qr~GR~gR~g~~~~~~~~~~~~~~ 72 (109)
...||||||+++||+|++ ++.+|||||+|.+...|+||+||+||.|.+|..++++..++.
T Consensus 480 ~g~VlIATdmAgRG~DI~l~~~V~~~ggl~VIn~d~p~s~r~y~hr~GRTGRqG~~G~s~~~vs~eD~ 547 (844)
T 1tf5_A 480 KGAVTIATNMAGRGTDIKLGEGVKELGGLAVVGTERHESRRIDNQLRGRSGRQGDPGITQFYLSMEDE 547 (844)
T ss_dssp TTCEEEEETTSSTTCCCCCCTTSGGGTSEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEEETTSS
T ss_pred CCeEEEeCCccccCcCccccchhhhcCCcEEEEecCCCCHHHHHhhcCccccCCCCCeEEEEecHHHH
Confidence 447999999999999999 788999999999999999999999999999998887655444
No 50
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=99.61 E-value=7.9e-16 Score=127.45 Aligned_cols=71 Identities=23% Similarity=0.207 Sum_probs=65.0
Q ss_pred ChHHHHHHHhcCCccEEEEcCccccccccCCCCEEEEeCC-CCCHHHHHHHHhhcccCCCceEEEEeccCch
Q psy16582 1 MDVQTMLSFNRGITNILVATDVLEEGIDIQSCNLVIKFDP-PQHTRSYVQSKAFTVVRHKAEQILSQYPKSE 71 (109)
Q Consensus 1 er~~~~~~F~~g~~~iLV~T~~~~~Gldi~~v~~Vi~~d~-p~~~~~y~qr~GR~gR~g~~~~~~~~~~~~~ 71 (109)
+|++++++|++|+++|||||+++++|+|+|++++||+++. +++..+|+||+||+||.|..+.++++++.++
T Consensus 852 eR~~il~~F~~g~~~VLVaT~v~e~GiDip~v~~VIi~~~~~~~l~~l~Qr~GRvgR~g~~g~~~ll~~~~~ 923 (1151)
T 2eyq_A 852 ELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPK 923 (1151)
T ss_dssp HHHHHHHHHHTTSCCEEEESSTTGGGSCCTTEEEEEETTTTSSCHHHHHHHHTTCCBTTBCEEEEEEECCGG
T ss_pred HHHHHHHHHHcCCCcEEEECCcceeeecccCCcEEEEeCCCCCCHHHHHHHHhccCcCCCceEEEEEECCcc
Confidence 4789999999999999999999999999999999999998 5799999999999999998888888876543
No 51
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=99.61 E-value=7.4e-16 Score=121.61 Aligned_cols=71 Identities=15% Similarity=0.195 Sum_probs=59.7
Q ss_pred ChHHHHHHHhcCCccEEEEcCccccccccCCCCEEEE----eC-------CCCCHHHHHHHHhhcccCC--CceEEEEec
Q psy16582 1 MDVQTMLSFNRGITNILVATDVLEEGIDIQSCNLVIK----FD-------PPQHTRSYVQSKAFTVVRH--KAEQILSQY 67 (109)
Q Consensus 1 er~~~~~~F~~g~~~iLV~T~~~~~Gldi~~v~~Vi~----~d-------~p~~~~~y~qr~GR~gR~g--~~~~~~~~~ 67 (109)
+|+.+++.|++|.++|||||+++++|+|+|++.+||+ || .|.+..+|.||+||+||.| ..|.++.++
T Consensus 326 ~r~~v~~~f~~g~~~vlvaT~~l~~Gidip~~~~VI~~~~~~d~~~~~~~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~ 405 (715)
T 2va8_A 326 LRDLIEEGFRQRKIKVIVATPTLAAGVNLPARTVIIGDIYRFNKKIAGYYDEIPIMEYKQMSGRAGRPGFDQIGESIVVV 405 (715)
T ss_dssp HHHHHHHHHHTTCSCEEEECGGGGGSSCCCBSEEEECCC--------------CHHHHHHHHTTBCCTTTCSCEEEEEEC
T ss_pred HHHHHHHHHHcCCCeEEEEChHHhcccCCCceEEEEeCCeeccccCCCCCCcCCHHHHHHHhhhcCCCCCCCCceEEEEe
Confidence 4788999999999999999999999999999999999 99 8999999999999999988 467788777
Q ss_pred cCch
Q psy16582 68 PKSE 71 (109)
Q Consensus 68 ~~~~ 71 (109)
.+.+
T Consensus 406 ~~~~ 409 (715)
T 2va8_A 406 RDKE 409 (715)
T ss_dssp SCGG
T ss_pred CCch
Confidence 5544
No 52
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=99.61 E-value=6.7e-16 Score=127.51 Aligned_cols=40 Identities=28% Similarity=0.497 Sum_probs=38.2
Q ss_pred hHHHHHHHhcCCccEEEE----cCccccccccCC-CCEEEEeCCCC
Q psy16582 2 DVQTMLSFNRGITNILVA----TDVLEEGIDIQS-CNLVIKFDPPQ 42 (109)
Q Consensus 2 r~~~~~~F~~g~~~iLV~----T~~~~~Gldi~~-v~~Vi~~d~p~ 42 (109)
|.+ +++|++|+++|||| |+++++|+|+|+ |++|||||+|.
T Consensus 344 rr~-l~~F~~G~~~VLVatas~TdvlarGIDip~~V~~VI~~d~P~ 388 (1104)
T 4ddu_A 344 EKN-FEDFKVGKINILIGVQAYYGKLTRGVDLPERIKYVIFWGTPS 388 (1104)
T ss_dssp HHH-HHHHHHTSCSEEEEETTTHHHHCCSCCCTTTCCEEEEESCCE
T ss_pred HHH-HHHHHCCCCCEEEEecCCCCeeEecCcCCCCCCEEEEECCCC
Confidence 456 99999999999999 999999999999 99999999998
No 53
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=99.61 E-value=1.2e-16 Score=121.44 Aligned_cols=61 Identities=16% Similarity=0.162 Sum_probs=58.2
Q ss_pred ChHHHHHHHhcCCccEEEEc-CccccccccCCCCEEEEeCCCCCHHHHHHHHhhcccCCCce
Q psy16582 1 MDVQTMLSFNRGITNILVAT-DVLEEGIDIQSCNLVIKFDPPQHTRSYVQSKAFTVVRHKAE 61 (109)
Q Consensus 1 er~~~~~~F~~g~~~iLV~T-~~~~~Gldi~~v~~Vi~~d~p~~~~~y~qr~GR~gR~g~~~ 61 (109)
+|++++++|++|+++||||| +++++|+|+|++++||++++|++...|+|++||+||.|.++
T Consensus 385 ~r~~i~~~f~~g~~~vLv~T~~~~~~GiDip~v~~vi~~~~~~s~~~~~Q~~GR~gR~g~~~ 446 (510)
T 2oca_A 385 TRNIMKTLAENGKGIIIVASYGVFSTGISVKNLHHVVLAHGVKSKIIVLQTIGRVLRKHGSK 446 (510)
T ss_dssp HHHHHHHHHHHCCSCEEEEEHHHHHHSCCCCSEEEEEESSCCCSCCHHHHHHHHHHTTTCCC
T ss_pred HHHHHHHHHhCCCCCEEEEEcChhhcccccccCcEEEEeCCCCCHHHHHHHHhcccccCCCC
Confidence 47889999999999999999 99999999999999999999999999999999999998765
No 54
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=99.60 E-value=3.1e-15 Score=119.23 Aligned_cols=66 Identities=14% Similarity=0.068 Sum_probs=55.5
Q ss_pred HhcCCccEEEEcCccccccccC--------CCCEEEEeCCCCCHHHHHHHHhhcccCCCceEEEEeccCchHHH
Q psy16582 9 FNRGITNILVATDVLEEGIDIQ--------SCNLVIKFDPPQHTRSYVQSKAFTVVRHKAEQILSQYPKSERYL 74 (109)
Q Consensus 9 F~~g~~~iLV~T~~~~~Gldi~--------~v~~Vi~~d~p~~~~~y~qr~GR~gR~g~~~~~~~~~~~~~~~~ 74 (109)
+..+...|+||||+++||+|++ +..+||++++|.+...|+||+||+||.|.+|..++++..++..+
T Consensus 518 ~ag~~g~VtVATdmAgRGtDI~lg~~V~~~GglhVInte~Pes~r~y~qriGRTGRqG~~G~a~~fvsleD~l~ 591 (822)
T 3jux_A 518 KAGQKGMVTIATNMAGRGTDIKLGPGVAELGGLCIIGTERHESRRIDNQLRGRAGRQGDPGESIFFLSLEDDLL 591 (822)
T ss_dssp HHHSTTCEEEEETTTTTTCCCCCCTTTTTTTSCEEEESSCCSSHHHHHHHHTTSSCSSCCCEEEEEEETTSHHH
T ss_pred hCCCCCeEEEEcchhhCCcCccCCcchhhcCCCEEEecCCCCCHHHHHHhhCccccCCCCeeEEEEechhHHHH
Confidence 3333447999999999999998 55699999999999999999999999999998888765554433
No 55
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=99.60 E-value=1e-15 Score=125.46 Aligned_cols=69 Identities=16% Similarity=0.247 Sum_probs=63.0
Q ss_pred ChHHHHHHHhcCCccEEEEcCccccccccCCCCEEEE----eCC----CCCHHHHHHHHhhcccCCC--ceEEEEeccC
Q psy16582 1 MDVQTMLSFNRGITNILVATDVLEEGIDIQSCNLVIK----FDP----PQHTRSYVQSKAFTVVRHK--AEQILSQYPK 69 (109)
Q Consensus 1 er~~~~~~F~~g~~~iLV~T~~~~~Gldi~~v~~Vi~----~d~----p~~~~~y~qr~GR~gR~g~--~~~~~~~~~~ 69 (109)
+|+.+++.|++|.++|||||+++++|+|+|.+++||+ ||. |.+..+|+||+||+||.|. .|.++.++.+
T Consensus 420 eR~~ve~~F~~G~ikVLVAT~~la~GIDiP~~~vVI~~~~kfd~~~~rp~s~~~y~Qr~GRAGR~G~d~~G~vi~l~~~ 498 (1010)
T 2xgj_A 420 LKEVIEILFQEGFLKVLFATETFSIGLNMPAKTVVFTSVRKWDGQQFRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDE 498 (1010)
T ss_dssp HHHHHHHHHHTTCCSEEEEEGGGGGSTTCCBSEEEESCSEEECSSCEEECCHHHHHHHHTTBCCTTTCSSEEEEEEECS
T ss_pred HHHHHHHHHhcCCCcEEEEehHhhccCCCCCceEEEeCCcccCCcCCccCCHHHHhHhhhhcccCCCCCceEEEEEECC
Confidence 3788999999999999999999999999999999999 999 8999999999999999986 4777777543
No 56
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=99.60 E-value=9e-16 Score=126.79 Aligned_cols=69 Identities=14% Similarity=0.216 Sum_probs=58.4
Q ss_pred ChHHHHHHHhcCCccEEEEcCccccccccCCCCEEEEeCCC--------CCHHHHHHHHhhcccCC--CceEEEEeccC
Q psy16582 1 MDVQTMLSFNRGITNILVATDVLEEGIDIQSCNLVIKFDPP--------QHTRSYVQSKAFTVVRH--KAEQILSQYPK 69 (109)
Q Consensus 1 er~~~~~~F~~g~~~iLV~T~~~~~Gldi~~v~~Vi~~d~p--------~~~~~y~qr~GR~gR~g--~~~~~~~~~~~ 69 (109)
+|+.+++.|++|.++|||||+++++|+|+|++++||+++.| .+..+|+||+||+||.| ..|.++.++.+
T Consensus 518 ~R~~v~~~F~~G~ikVLVAT~vla~GIDiP~v~~VI~~~~~~d~~~~r~iS~~eyiQr~GRAGR~G~d~~G~~ill~~~ 596 (1108)
T 3l9o_A 518 LKEVIEILFQEGFLKVLFATETFSIGLNMPAKTVVFTSVRKWDGQQFRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDE 596 (1108)
T ss_dssp HHHHHHHHHHHTCCCEEEEESCCCSCCCC--CEEEESCSEEESSSCEEECCHHHHHHHHHHSCCSSSCSSEEEEEEECC
T ss_pred HHHHHHHHHhCCCCeEEEECcHHhcCCCCCCceEEEecCcccCccccccCCHHHHHHhhcccCCCCCCCceEEEEEecC
Confidence 37889999999999999999999999999999999977663 47788999999999999 57777777543
No 57
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=99.60 E-value=1.3e-15 Score=120.10 Aligned_cols=71 Identities=18% Similarity=0.266 Sum_probs=63.5
Q ss_pred ChHHHHHHHhcCCccEEEEcCccccccccCCCCEEEE----eC---CCCCHHHHHHHHhhcccCC--CceEEEEeccCch
Q psy16582 1 MDVQTMLSFNRGITNILVATDVLEEGIDIQSCNLVIK----FD---PPQHTRSYVQSKAFTVVRH--KAEQILSQYPKSE 71 (109)
Q Consensus 1 er~~~~~~F~~g~~~iLV~T~~~~~Gldi~~v~~Vi~----~d---~p~~~~~y~qr~GR~gR~g--~~~~~~~~~~~~~ 71 (109)
+|+.+++.|++|+++|||||+++++|+|+|.+.+||+ || .|.+..+|+||+||+||.| ..|.++.++.+.+
T Consensus 310 ~R~~v~~~f~~g~~~vlvaT~~l~~Gidip~~~~VI~~~~~yd~~~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~~~~ 389 (702)
T 2p6r_A 310 QRRVVEDAFRRGNIKVVVATPTLAAGVNLPARRVIVRSLYRFDGYSKRIKVSEYKQMAGRAGRPGMDERGEAIIIVGKRD 389 (702)
T ss_dssp HHHHHHHHHHTTSCCEEEECSTTTSSSCCCBSEEEECCSEEESSSEEECCHHHHHHHHTTBSCTTTCSCEEEEEECCGGG
T ss_pred HHHHHHHHHHCCCCeEEEECcHHhccCCCCceEEEEcCceeeCCCCCcCCHHHHHHHhhhcCCCCCCCCceEEEEecCcc
Confidence 4788999999999999999999999999999999999 77 7999999999999999988 4677777765543
No 58
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=99.59 E-value=1.3e-15 Score=120.52 Aligned_cols=70 Identities=17% Similarity=0.174 Sum_probs=62.8
Q ss_pred ChHHHHHHHhcCCccEEEEcCccccccccCCCCEEEE----eC----CCCCHHHHHHHHhhcccCC--CceEEEEeccCc
Q psy16582 1 MDVQTMLSFNRGITNILVATDVLEEGIDIQSCNLVIK----FD----PPQHTRSYVQSKAFTVVRH--KAEQILSQYPKS 70 (109)
Q Consensus 1 er~~~~~~F~~g~~~iLV~T~~~~~Gldi~~v~~Vi~----~d----~p~~~~~y~qr~GR~gR~g--~~~~~~~~~~~~ 70 (109)
+|+.+++.|++|.++|||||+++++|+|+|.+++||+ || .|.+..+|+||+||+||.| ..|.++.++.+.
T Consensus 308 ~R~~v~~~f~~g~~~vlvaT~~l~~Gvdip~~~~VI~~~~~yd~~g~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~~~ 387 (720)
T 2zj8_A 308 ERVLVEENFRKGIIKAVVATPTLSAGINTPAFRVIIRDIWRYSDFGMERIPIIEVHQMLGRAGRPKYDEVGEGIIVSTSD 387 (720)
T ss_dssp HHHHHHHHHHTTSSCEEEECSTTGGGCCCCBSEEEECCSEECCSSSCEECCHHHHHHHHTTBCCTTTCSEEEEEEECSSS
T ss_pred HHHHHHHHHHCCCCeEEEECcHhhccCCCCceEEEEcCCeeecCCCCccCCHHHHHHHHhhcCCCCCCCCceEEEEecCc
Confidence 4788999999999999999999999999999999999 87 6999999999999999988 467777776544
No 59
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=99.57 E-value=2.6e-16 Score=126.08 Aligned_cols=69 Identities=13% Similarity=0.140 Sum_probs=62.2
Q ss_pred ChHHHHHHHh-----cCCccEEEEcCccccccccCCCCEEEEeCC------------------CCCHHHHHHHHhhcccC
Q psy16582 1 MDVQTMLSFN-----RGITNILVATDVLEEGIDIQSCNLVIKFDP------------------PQHTRSYVQSKAFTVVR 57 (109)
Q Consensus 1 er~~~~~~F~-----~g~~~iLV~T~~~~~Gldi~~v~~Vi~~d~------------------p~~~~~y~qr~GR~gR~ 57 (109)
+|.++++.|+ +|..+|||||+++++|+|+|+|++||++++ |.+..+|+||+||+||.
T Consensus 352 eR~~v~~~f~~~~~~~g~~kVlVAT~iae~GidIp~v~~VId~g~~k~~~yd~~~g~~~L~~~p~S~~s~~QR~GRaGR~ 431 (773)
T 2xau_A 352 QQQRIFEPAPESHNGRPGRKVVISTNIAETSLTIDGIVYVVDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRT 431 (773)
T ss_dssp HHGGGGSCCCCCSSSSCCEEEEEECTHHHHTCCCTTEEEEEECSEEEEEEEETTTTEEEEEEEECCHHHHHHHHHGGGSS
T ss_pred HHHHHHhhcccccCCCCceEEEEeCcHHHhCcCcCCeEEEEeCCCccceeeccccCccccccccCCHHHHHhhccccCCC
Confidence 3667888999 999999999999999999999999999888 89999999999999999
Q ss_pred CCceEEEEeccCc
Q psy16582 58 HKAEQILSQYPKS 70 (109)
Q Consensus 58 g~~~~~~~~~~~~ 70 (109)
..|.++.++.++
T Consensus 432 -~~G~~~~l~~~~ 443 (773)
T 2xau_A 432 -RPGKCFRLYTEE 443 (773)
T ss_dssp -SSEEEEESSCHH
T ss_pred -CCCEEEEEecHH
Confidence 777888876543
No 60
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=99.55 E-value=4.1e-15 Score=115.11 Aligned_cols=58 Identities=17% Similarity=0.216 Sum_probs=54.8
Q ss_pred hHHHHHHHhcCCcc---EEEEcCccccccccCCCCEEEEeCCCCCHHHHHHHHhhcccCCC
Q psy16582 2 DVQTMLSFNRGITN---ILVATDVLEEGIDIQSCNLVIKFDPPQHTRSYVQSKAFTVVRHK 59 (109)
Q Consensus 2 r~~~~~~F~~g~~~---iLV~T~~~~~Gldi~~v~~Vi~~d~p~~~~~y~qr~GR~gR~g~ 59 (109)
|++++++|++|+.+ |||||+++++|+|+|+|++||++++|++...|+|++||+||.+.
T Consensus 485 r~~~l~~F~~~~~~~~~ilvtt~~l~~GiDip~v~~Vi~~~~~~s~~~~~Q~iGR~~R~~~ 545 (590)
T 3h1t_A 485 GKGHLSRFQELETSTPVILTTSQLLTTGVDAPTCKNVVLARVVNSMSEFKQIVGRGTRLRE 545 (590)
T ss_dssp HHHHHHHHHCTTCCCCCEEEESSTTTTTCCCTTEEEEEEESCCCCHHHHHHHHTTSCCCBG
T ss_pred HHHHHHHHhCCCCCCCEEEEECChhhcCccchheeEEEEEecCCChHHHHHHHhhhcccCc
Confidence 78999999998877 89999999999999999999999999999999999999999663
No 61
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=99.54 E-value=6.1e-15 Score=118.61 Aligned_cols=68 Identities=13% Similarity=0.010 Sum_probs=57.8
Q ss_pred HHHHHHHhcCCccEEEEcCccccccccCCC-------------------------------------CEEEEeCCCCCHH
Q psy16582 3 VQTMLSFNRGITNILVATDVLEEGIDIQSC-------------------------------------NLVIKFDPPQHTR 45 (109)
Q Consensus 3 ~~~~~~F~~g~~~iLV~T~~~~~Gldi~~v-------------------------------------~~Vi~~d~p~~~~ 45 (109)
.-+.++|+.| .|+||||+++||+||+.. .+||+|++|.+..
T Consensus 481 ~iia~agr~G--~VtIATnmAgRGtDI~l~gn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGl~VI~te~pes~r 558 (853)
T 2fsf_A 481 AIVAQAGYPA--AVTIATNMAGRGTDIVLGGSWQAEVAALENPTAEQIEKIKADWQVRHDAVLEAGGLHIIGTERHESRR 558 (853)
T ss_dssp HHHHTTTSTT--CEEEEESCCSSCSCCCTTCCHHHHHHHCSSCCSSHHHHHHHHHHHHHHHHHHTTSEEEEESSCCSSHH
T ss_pred HHHHhcCCCC--eEEEecccccCCcCccCCCchHhhhhhcccchhHHHHHHHHHhhhhhhHHHhcCCcEEEEccCCCCHH
Confidence 3345667777 699999999999999974 5999999999999
Q ss_pred HHHHHHhhcccCCCceEEEEeccCchH
Q psy16582 46 SYVQSKAFTVVRHKAEQILSQYPKSER 72 (109)
Q Consensus 46 ~y~qr~GR~gR~g~~~~~~~~~~~~~~ 72 (109)
.|.||+||+||.|.+|...++...++.
T Consensus 559 iy~qr~GRTGRqGd~G~s~~fls~eD~ 585 (853)
T 2fsf_A 559 IDNQLRGRSGRQGDAGSSRFYLSMEDA 585 (853)
T ss_dssp HHHHHHTTSSGGGCCEEEEEEEETTSG
T ss_pred HHHhhccccccCCCCeeEEEEecccHH
Confidence 999999999999999998877654443
No 62
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=99.51 E-value=3.3e-14 Score=114.86 Aligned_cols=68 Identities=16% Similarity=0.121 Sum_probs=57.7
Q ss_pred HHHHHhcCCccEEEEcCccccccccCCC----------------------------------------------------
Q psy16582 5 TMLSFNRGITNILVATDVLEEGIDIQSC---------------------------------------------------- 32 (109)
Q Consensus 5 ~~~~F~~g~~~iLV~T~~~~~Gldi~~v---------------------------------------------------- 32 (109)
+.++|+.| .|+|||++++||+||+.+
T Consensus 502 ia~agr~G--~VtIATnmAgRGtDI~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GG 579 (922)
T 1nkt_A 502 IAVAGRRG--GVTVATNMAGRGTDIVLGGNVDFLTDQRLRERGLDPVETPEEYEAAWHSELPIVKEEASKEAKEVIEAGG 579 (922)
T ss_dssp HHTTTSTT--CEEEEETTCSTTCCCCTTCCHHHHHHHHHHHTTCCTTTSHHHHHHHHHHHHHHHHHHTTHHHHHHHHTTS
T ss_pred HHhcCCCC--eEEEecchhhcCccccCCCCHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHhhhHHHhcCC
Confidence 44556666 699999999999999975
Q ss_pred CEEEEeCCCCCHHHHHHHHhhcccCCCceEEEEeccCchHHH
Q psy16582 33 NLVIKFDPPQHTRSYVQSKAFTVVRHKAEQILSQYPKSERYL 74 (109)
Q Consensus 33 ~~Vi~~d~p~~~~~y~qr~GR~gR~g~~~~~~~~~~~~~~~~ 74 (109)
.+||+|+.|.+...|.||+||+||.|.+|...++...++..+
T Consensus 580 lhVI~te~pes~riy~qr~GRTGRqGdpG~s~fflSleD~l~ 621 (922)
T 1nkt_A 580 LYVLGTERHESRRIDNQLRGRSGRQGDPGESRFYLSLGDELM 621 (922)
T ss_dssp EEEEECSCCSSHHHHHHHHHTSSGGGCCEEEEEEEETTSHHH
T ss_pred cEEEeccCCCCHHHHHHHhcccccCCCCeeEEEEechhHHHH
Confidence 499999999999999999999999999999888865544443
No 63
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=99.50 E-value=1.3e-14 Score=109.87 Aligned_cols=62 Identities=18% Similarity=0.136 Sum_probs=52.8
Q ss_pred ChHHHHHHHhcC-Ccc-EEEEcCccccccccCCCCEEEEeCCCCCHHHHHHHHhhcccCCCceE
Q psy16582 1 MDVQTMLSFNRG-ITN-ILVATDVLEEGIDIQSCNLVIKFDPPQHTRSYVQSKAFTVVRHKAEQ 62 (109)
Q Consensus 1 er~~~~~~F~~g-~~~-iLV~T~~~~~Gldi~~v~~Vi~~d~p~~~~~y~qr~GR~gR~g~~~~ 62 (109)
+|++++++|++| .++ +|++|+++++|+|+|.+++||+||+|+++..|.|++||++|.|....
T Consensus 380 ~R~~~~~~F~~~~~~~vil~st~~~~~Glnl~~~~~vi~~d~~~~~~~~~Q~~gR~~R~Gq~~~ 443 (500)
T 1z63_A 380 ERDDIISKFQNNPSVKFIVLSVKAGGFGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRN 443 (500)
T ss_dssp HHHHHHHHHHHCTTCCCCEEECCCC-CCCCCTTCSEEEESSCCSCC---CHHHHTTTTTTTTSC
T ss_pred HHHHHHHHhcCCCCCCEEEEecccccCCCchhhCCEEEEeCCCCCcchHHHHHHHHHHcCCCCe
Confidence 478999999998 566 79999999999999999999999999999999999999999986543
No 64
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=99.49 E-value=1.8e-14 Score=113.89 Aligned_cols=60 Identities=25% Similarity=0.168 Sum_probs=51.6
Q ss_pred HhcCCccEEEEcCccccccccCCCCEEE----------EeC-----------CCCCHHHHHHHHhhcccCCCceEEEEec
Q psy16582 9 FNRGITNILVATDVLEEGIDIQSCNLVI----------KFD-----------PPQHTRSYVQSKAFTVVRHKAEQILSQY 67 (109)
Q Consensus 9 F~~g~~~iLV~T~~~~~Gldi~~v~~Vi----------~~d-----------~p~~~~~y~qr~GR~gR~g~~~~~~~~~ 67 (109)
|+++..+||||||++++|||+| +++|| ||| +|.+.++|+||+||+|| |..|. +.++
T Consensus 435 r~~~~~~VLVATdVaerGIDId-V~~VI~~Gl~~~~ViNyDydP~~gl~~~~~P~s~~syiQRiGRtGR-g~~G~-i~lv 511 (666)
T 3o8b_A 435 IPTIGDVVVVATDALMTGYTGD-FDSVIDCNTCVTQTVDFSLDPTFTIETTTVPQDAVSRSQRRGRTGR-GRRGI-YRFV 511 (666)
T ss_dssp SCSSSCEEEEECTTHHHHCCCC-BSEEEECCEEEEEEEECCCSSSCEEEEEEEECBHHHHHHHHTTBCS-SSCEE-EEES
T ss_pred HHhCCCcEEEECChHHccCCCC-CcEEEecCcccccccccccccccccccccCcCCHHHHHHHhccCCC-CCCCE-EEEE
Confidence 5566779999999999999997 99988 788 99999999999999999 88888 6665
Q ss_pred cCch
Q psy16582 68 PKSE 71 (109)
Q Consensus 68 ~~~~ 71 (109)
.+.+
T Consensus 512 t~~e 515 (666)
T 3o8b_A 512 TPGE 515 (666)
T ss_dssp CCCC
T ss_pred ecch
Confidence 5433
No 65
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=99.47 E-value=5.2e-14 Score=115.36 Aligned_cols=66 Identities=14% Similarity=0.211 Sum_probs=55.9
Q ss_pred ChHHHHHHHhcCCccEEEEcCccccccccCCCCEEEEeCCC---------CCHHHHHHHHhhcccCC--CceEEEEec
Q psy16582 1 MDVQTMLSFNRGITNILVATDVLEEGIDIQSCNLVIKFDPP---------QHTRSYVQSKAFTVVRH--KAEQILSQY 67 (109)
Q Consensus 1 er~~~~~~F~~g~~~iLV~T~~~~~Gldi~~v~~Vi~~d~p---------~~~~~y~qr~GR~gR~g--~~~~~~~~~ 67 (109)
+|+.+++.|++|.++|||||+++++|+|+|++.+ |.+++| .+..+|+|++||+||.| ..|.++.++
T Consensus 413 ~R~~v~~~F~~G~~kVLvAT~~~a~GIDiP~~~V-Vi~~~~k~dg~~~~~~s~~~y~Qr~GRAGR~G~~~~G~vi~l~ 489 (997)
T 4a4z_A 413 VKELIEILFSKGFIKVLFATETFAMGLNLPTRTV-IFSSIRKHDGNGLRELTPGEFTQMAGRAGRRGLDSTGTVIVMA 489 (997)
T ss_dssp HHHHHHHHHHTTCCSEEEECTHHHHSCCCCCSEE-EESCSEEEETTEEEECCHHHHHHHHGGGCCTTTCSSEEEEEEC
T ss_pred HHHHHHHHHHCCCCcEEEEchHhhCCCCCCCceE-EEeccccccCccCCCCCHHHHhHHhcccccCCCCcceEEEEec
Confidence 4788999999999999999999999999999544 444444 49999999999999988 566677665
No 66
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=99.41 E-value=2.8e-13 Score=106.44 Aligned_cols=67 Identities=15% Similarity=0.182 Sum_probs=59.0
Q ss_pred ChHHHHHHHhcCCcc---EEEEcCccccccccCCCCEEEEeCCCCCHHHHHHHHhhcccCCCce--EEEEec
Q psy16582 1 MDVQTMLSFNRGITN---ILVATDVLEEGIDIQSCNLVIKFDPPQHTRSYVQSKAFTVVRHKAE--QILSQY 67 (109)
Q Consensus 1 er~~~~~~F~~g~~~---iLV~T~~~~~Gldi~~v~~Vi~~d~p~~~~~y~qr~GR~gR~g~~~--~~~~~~ 67 (109)
+|++++++|++|... +|++|+++++|+|++.+++||+||+|+++..|.|++||++|.|... .++.+.
T Consensus 454 ~R~~~i~~F~~~~~~~~v~L~st~a~g~Glnl~~a~~Vi~~d~~wnp~~~~Qa~gR~~R~Gq~~~v~v~~lv 525 (644)
T 1z3i_X 454 KRAKIVERFNNPSSPEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDEQAMARVWRDGQKKTCYIYRLL 525 (644)
T ss_dssp HHHHHHHHHHSTTCCCCEEEEEGGGSCTTCCCTTEEEEEECSCCSSHHHHHHHHTTSSSTTCCSCEEEEEEE
T ss_pred HHHHHHHHhcCCCCCcEEEEEecccccCCcccccCCEEEEECCCCCccHHHHHHHhhhhcCCCCceEEEEEE
Confidence 478999999998764 8999999999999999999999999999999999999999999653 344443
No 67
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=99.33 E-value=2.5e-12 Score=105.83 Aligned_cols=68 Identities=12% Similarity=0.037 Sum_probs=60.8
Q ss_pred hHHHHHHHhcCCccEEEEcCccccccccCCCCEEEEeCCCCCHHHHHHHHhhcccCCCc----eEEEEeccCc
Q psy16582 2 DVQTMLSFNRGITNILVATDVLEEGIDIQSCNLVIKFDPPQHTRSYVQSKAFTVVRHKA----EQILSQYPKS 70 (109)
Q Consensus 2 r~~~~~~F~~g~~~iLV~T~~~~~Gldi~~v~~Vi~~d~p~~~~~y~qr~GR~gR~g~~----~~~~~~~~~~ 70 (109)
|++++++|++|+++|||+|+++.+|+|+|.+ .++++|.|.+...|+|++||++|.+.+ |.++.+....
T Consensus 638 R~~i~~~Fk~g~i~ILIvvd~lltGfDiP~l-~tlylDkpl~~~~liQaIGRtnR~~~~~K~~G~IVdf~~~~ 709 (1038)
T 2w00_A 638 YRDLAQRVKNQDIDLLIVVGMFLTGFDAPTL-NTLFVDKNLRYHGLMQAFSRTNRIYDATKTFGNIVTFRDLE 709 (1038)
T ss_dssp HHHHHHHHHTTSSSEEEESSTTSSSCCCTTE-EEEEEESCCCHHHHHHHHHTTCCCCCTTCCSEEEEESSCCH
T ss_pred HHHHHHHHHcCCCeEEEEcchHHhCcCcccc-cEEEEccCCCccceeehhhccCcCCCCCCCcEEEEEccccH
Confidence 6788999999999999999999999999999 788999999999999999999998753 6777766543
No 68
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=99.31 E-value=1.1e-12 Score=105.10 Aligned_cols=67 Identities=18% Similarity=0.169 Sum_probs=58.6
Q ss_pred ChHHHHHHHhcCCcc---EEEEcCccccccccCCCCEEEEeCCCCCHHHHHHHHhhcccCCCc--eEEEEec
Q psy16582 1 MDVQTMLSFNRGITN---ILVATDVLEEGIDIQSCNLVIKFDPPQHTRSYVQSKAFTVVRHKA--EQILSQY 67 (109)
Q Consensus 1 er~~~~~~F~~g~~~---iLV~T~~~~~Gldi~~v~~Vi~~d~p~~~~~y~qr~GR~gR~g~~--~~~~~~~ 67 (109)
+|++++++|+++... +|++|.+++.|+|++.+++||+||+|+++..+.|++||+.|.|.. ..++.++
T Consensus 610 eR~~~i~~F~~~~~~~~v~LlSt~agg~GlNL~~a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~Vyrlv 681 (800)
T 3mwy_W 610 QRRISIDHFNSPDSNDFVFLLSTRAGGLGINLMTADTVVIFDSDWNPQADLQAMARAHRIGQKNHVMVYRLV 681 (800)
T ss_dssp HHHHHHHTTSSTTCSCCCEEEEHHHHTTTCCCTTCCEEEESSCCSCSHHHHHHHTTTSCSSCCSCEEEEEEE
T ss_pred HHHHHHHHhhCCCCCceEEEEecccccCCCCccccceEEEecCCCChhhHHHHHHHHHhcCCCceEEEEEEe
Confidence 478999999986654 999999999999999999999999999999999999999999854 3344443
No 69
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=99.30 E-value=2.2e-12 Score=110.30 Aligned_cols=69 Identities=12% Similarity=0.079 Sum_probs=59.1
Q ss_pred ChHHHHHHHhcCCccEEEEcCccccccccCCCCEEEE----e------CCCCCHHHHHHHHhhcccCCC--ceEEEEecc
Q psy16582 1 MDVQTMLSFNRGITNILVATDVLEEGIDIQSCNLVIK----F------DPPQHTRSYVQSKAFTVVRHK--AEQILSQYP 68 (109)
Q Consensus 1 er~~~~~~F~~g~~~iLV~T~~~~~Gldi~~v~~Vi~----~------d~p~~~~~y~qr~GR~gR~g~--~~~~~~~~~ 68 (109)
+|+.+.+.|++|.++|||||+.+++|+|+|...+||. | ..|.+..+|+|++|||||.|. .|.++.++.
T Consensus 1227 ~R~~VE~lF~~G~i~VLvaT~tlA~GVnlPa~~VVI~~~~~~dg~~~~~~~~s~~~~~Qm~GRAGR~g~d~~G~avll~~ 1306 (1724)
T 4f92_B 1227 ERRLVEQLFSSGAIQVVVASRSLCWGMNVAAHLVIIMDTQYYNGKIHAYVDYPIYDVLQMVGHANRPLQDDEGRCVIMCQ 1306 (1724)
T ss_dssp HHHHHHHHHHHTSBCEEEEEGGGSSSCCCCBSEEEEECSEEEETTTTEEEECCHHHHHHHHTTBCCTTTCSCEEEEEEEE
T ss_pred HHHHHHHHHHCCCCeEEEEChHHHcCCCCCccEEEEecCccccCcccccCCCCHHHHHHhhccccCCCCCCceEEEEEec
Confidence 4788999999999999999999999999999999983 3 346789999999999999985 566666654
Q ss_pred C
Q psy16582 69 K 69 (109)
Q Consensus 69 ~ 69 (109)
.
T Consensus 1307 ~ 1307 (1724)
T 4f92_B 1307 G 1307 (1724)
T ss_dssp G
T ss_pred c
Confidence 3
No 70
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=99.25 E-value=3.5e-12 Score=109.10 Aligned_cols=68 Identities=15% Similarity=0.129 Sum_probs=58.1
Q ss_pred ChHHHHHHHhcCCccEEEEcCccccccccCCCCEEEE----eCC------CCCHHHHHHHHhhcccCC--CceEEEEecc
Q psy16582 1 MDVQTMLSFNRGITNILVATDVLEEGIDIQSCNLVIK----FDP------PQHTRSYVQSKAFTVVRH--KAEQILSQYP 68 (109)
Q Consensus 1 er~~~~~~F~~g~~~iLV~T~~~~~Gldi~~v~~Vi~----~d~------p~~~~~y~qr~GR~gR~g--~~~~~~~~~~ 68 (109)
+|..+.+.|++|.++|||||+.++.|+|+|.+.+||. ||. |.+..+|.|++|||||.| ..|.++.++.
T Consensus 392 ~R~~vE~~F~~G~i~vlvaTsTLa~GVNlPa~~vVI~~~~~~~~~~~~~~~ls~~~~~Qm~GRAGR~g~d~~G~~ii~~~ 471 (1724)
T 4f92_B 392 DRTLVEDLFADKHIQVLVSTATLAWGVNLPAHTVIIKGTQVYSPEKGRWTELGALDILQMLGRAGRPQYDTKGEGILITS 471 (1724)
T ss_dssp HHHHHHHHHHTTCCCEEEECHHHHHHSCCCBSEEEEECCEEEETTTTEEEECCHHHHHHHHTTBSCTTTCSCEEEEEEEE
T ss_pred HHHHHHHHHHCCCCeEEEEcchhHhhCCCCCceEEEeCCEEecCcCCCcccCCHHHHHHhhhhccCCCCCCccEEEEEec
Confidence 4788899999999999999999999999999999985 553 568999999999999987 3566655543
No 71
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=98.13 E-value=3.2e-06 Score=65.16 Aligned_cols=65 Identities=9% Similarity=0.060 Sum_probs=37.8
Q ss_pred ChHHHHHHHhcCCccEEE--EcCccccccccCC----CCEEEEeCCCCCH------------------------------
Q psy16582 1 MDVQTMLSFNRGITNILV--ATDVLEEGIDIQS----CNLVIKFDPPQHT------------------------------ 44 (109)
Q Consensus 1 er~~~~~~F~~g~~~iLV--~T~~~~~Gldi~~----v~~Vi~~d~p~~~------------------------------ 44 (109)
++++++++|+++. .||+ +|+.+.+|||+|+ +++||++++|...
T Consensus 417 ~~~~~l~~f~~~~-~il~~V~~~~~~EGiD~~~~~~~~~~Vii~~lPf~~~~d~~~~~r~~~~~~~~~~~~~~~~~~~~~ 495 (540)
T 2vl7_A 417 RHEEVLELMKTGK-YLVMLVMRAKESEGVEFREKENLFESLVLAGLPYPNVSDDMVRKRIERLSKLTGKDEDSIIHDLTA 495 (540)
T ss_dssp CHHHHHHHHHTSC-CEEEEEC---------------CEEEEEEESCCCCCTTSHHHHHHHHHHHHHHTCCHHHHHHHHHH
T ss_pred cHHHHHHHHhcCC-eEEEEEecCceecceecCCCcccccEEEEECCCCCCCCCHHHHHHHHHHHHhhCCChhHHHHHHHH
Confidence 3678999999865 5766 8999999999997 8999999999421
Q ss_pred HHHHHHHhhcccCCC-ceEEEEe
Q psy16582 45 RSYVQSKAFTVVRHK-AEQILSQ 66 (109)
Q Consensus 45 ~~y~qr~GR~gR~g~-~~~~~~~ 66 (109)
..+.|.+||+-|... .|.++.+
T Consensus 496 ~~~~Q~~GR~iR~~~D~g~v~ll 518 (540)
T 2vl7_A 496 IVIKQTIGRAFRDPNDYVKIYLC 518 (540)
T ss_dssp HHHHHHHHHHCCSTTCCCEEEEE
T ss_pred HHHHHHhCCcccCCCccEEEEEE
Confidence 234689999988654 4444443
No 72
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=96.53 E-value=0.0098 Score=49.01 Aligned_cols=36 Identities=8% Similarity=-0.106 Sum_probs=29.9
Q ss_pred EEEEeCCCCCHHHHHHHHhhcccCCCceEEEEeccC
Q psy16582 34 LVIKFDPPQHTRSYVQSKAFTVVRHKAEQILSQYPK 69 (109)
Q Consensus 34 ~Vi~~d~p~~~~~y~qr~GR~gR~g~~~~~~~~~~~ 69 (109)
+||--..+.|..-=.|..||+||.|.+|..-++..-
T Consensus 662 hVIGTeRhESrRIDnQLRGRaGRQGDPGsSrF~LSL 697 (997)
T 2ipc_A 662 FIIGTERHESRRIDNQLRGRAGRQGDPGGSRFYVSF 697 (997)
T ss_dssp CEEESSCCSSHHHHHHHHHTSSCSSCCCEEEEEEES
T ss_pred EEEeccCCchHHHHHHHhcccccCCCCCCeEEEEEC
Confidence 788888888888889999999999988776655443
No 73
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=96.36 E-value=0.012 Score=46.13 Aligned_cols=64 Identities=14% Similarity=0.102 Sum_probs=40.9
Q ss_pred hHHHHHHHhcCCccEEEEcC--ccccccccCC--CCEEEEeCCCCC-------------------HH----------HHH
Q psy16582 2 DVQTMLSFNRGITNILVATD--VLEEGIDIQS--CNLVIKFDPPQH-------------------TR----------SYV 48 (109)
Q Consensus 2 r~~~~~~F~~g~~~iLV~T~--~~~~Gldi~~--v~~Vi~~d~p~~-------------------~~----------~y~ 48 (109)
+.+++++|+ ++-.||++|. .+.+|+|+|+ +..||...+|.- .. ...
T Consensus 484 ~~~ll~~f~-~~~~vL~~v~~gsf~EGiD~~g~~l~~viI~~lPfp~~~p~~~ar~~~~~~~~g~~~~~~y~~pa~~~l~ 562 (620)
T 4a15_A 484 LYSMLKKFR-RDHGTIFAVSGGRLSEGINFPGNELEMIILAGLPFPRPDAINRSLFDYYERKYGKGWEYSVVYPTAIKIR 562 (620)
T ss_dssp HHHHHHHHT-TSCCEEEEETTSCC--------CCCCEEEESSCCCCCCCHHHHHHHHHHHHHHSCHHHHHTHHHHHHHHH
T ss_pred HHHHHHHhc-cCCcEEEEEecCceeccccCCCCceEEEEEEcCCCCCCCHHHHHHHHHHHHhhCCCchHHhHHHHHHHHH
Confidence 567899999 8888999974 8999999996 778999888842 11 126
Q ss_pred HHHhhcccCCC-ceEEEEe
Q psy16582 49 QSKAFTVVRHK-AEQILSQ 66 (109)
Q Consensus 49 qr~GR~gR~g~-~~~~~~~ 66 (109)
|-+||+=|... .|.++.+
T Consensus 563 Qa~GRlIR~~~D~G~v~ll 581 (620)
T 4a15_A 563 QEIGRLIRSAEDTGACVIL 581 (620)
T ss_dssp HHHHTTCCSTTCCEEEEEE
T ss_pred HHhCccccCCCceEEEEEE
Confidence 89999888654 4444443
No 74
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=94.94 E-value=0.12 Score=39.64 Aligned_cols=41 Identities=15% Similarity=0.156 Sum_probs=32.3
Q ss_pred hHHHHHHHhcCCccEEEEc--CccccccccC-----CCCEEEEeCCCC
Q psy16582 2 DVQTMLSFNRGITNILVAT--DVLEEGIDIQ-----SCNLVIKFDPPQ 42 (109)
Q Consensus 2 r~~~~~~F~~g~~~iLV~T--~~~~~Gldi~-----~v~~Vi~~d~p~ 42 (109)
+.+.++.|+...-.||+|| ..+.+|+|+| .+..||...+|.
T Consensus 426 ~~~~~~~~~~~~~~vl~~v~gg~~~EGiD~~d~~g~~l~~viI~~lPf 473 (551)
T 3crv_A 426 VEDLYSAISANNKVLIGSVGKGKLAEGIELRNNDRSLISDVVIVGIPY 473 (551)
T ss_dssp HHHHHHHTTSSSSCEEEEESSCCSCCSSCCEETTEESEEEEEEESCCC
T ss_pred HHHHHHHHHhcCCeEEEEEecceecccccccccCCcceeEEEEEcCCC
Confidence 4578888964444799998 6999999999 478899887773
No 75
>3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A
Probab=90.39 E-value=0.46 Score=34.69 Aligned_cols=57 Identities=9% Similarity=-0.063 Sum_probs=38.2
Q ss_pred cCCccEEEEcCccccccc-----cCCCCEEEEeCCCCCHHH-HHHHHhhcccCC----CceEEEEec
Q psy16582 11 RGITNILVATDVLEEGID-----IQSCNLVIKFDPPQHTRS-YVQSKAFTVVRH----KAEQILSQY 67 (109)
Q Consensus 11 ~g~~~iLV~T~~~~~Gld-----i~~v~~Vi~~d~p~~~~~-y~qr~GR~gR~g----~~~~~~~~~ 67 (109)
++.+.+.+.|....-|++ ....+.||.||..+++.. .+|.+-|+.|.+ +...++.+.
T Consensus 168 ~~~~~i~Lltsag~~gin~~~~nl~~aD~VI~~DsdwNp~~d~iQa~~r~~R~~~gq~k~v~V~RLv 234 (328)
T 3hgt_A 168 DFSCTVHLFSSEGINFTKYPIKSKARFDMLICLDTTVDTSQKDIQYLLQYKRERKGLERYAPIVRLV 234 (328)
T ss_dssp CCSEEEEEEESSCCCTTTSCCCCCSCCSEEEECSTTCCTTSHHHHHHHCCC---------CCEEEEE
T ss_pred cCCceEEEEECCCCCCcCcccccCCCCCEEEEECCCCCCCChHHHHHHHHhhhccCCCCcceEEEEe
Confidence 345556565776666776 678999999999999887 589888887763 344455553
No 76
>3brc_A Conserved protein of unknown function; methanobacterium thermoautotrophicum, STR genomics, MCSG, PSI-2; 1.60A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=69.36 E-value=3.4 Score=26.75 Aligned_cols=50 Identities=22% Similarity=0.210 Sum_probs=34.2
Q ss_pred HHHHHHhcCCccEE-EEcCccc-----------cccccCCCCEEEEeCCCCCHHHHHHHHhhcccCCCceEEEEe
Q psy16582 4 QTMLSFNRGITNIL-VATDVLE-----------EGIDIQSCNLVIKFDPPQHTRSYVQSKAFTVVRHKAEQILSQ 66 (109)
Q Consensus 4 ~~~~~F~~g~~~iL-V~T~~~~-----------~Gldi~~v~~Vi~~d~p~~~~~y~qr~GR~gR~g~~~~~~~~ 66 (109)
+++.+|-..++..| |.|+.+. .++|+.++++||-- ||-|-.|+++..+.+
T Consensus 54 ~il~~~~~~~i~~l~i~Tn~aDlTRmPA~~K~LmAvD~~dADlvIAR-------------GRLGvPGSGSmLvim 115 (156)
T 3brc_A 54 DVLRSFNLREAEHLQFNTNWADLTRMPAVTKALMALDISGADLVIAR-------------GRLGVPGSGSLLVIM 115 (156)
T ss_dssp HHHHHTTCCCCEECCSCCGGGGGSSSHHHHHHHHHHHHHCCSEEEEE-------------EECSSTTSCEEEEEE
T ss_pred HHHHHhcCCccceeeccCcchhcccCcHHHHHHHheeccCCcEEEEc-------------ccccCCCCccEEEEE
Confidence 45556655555544 6676654 47899999998864 788888877665554
No 77
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=58.15 E-value=6.7 Score=31.62 Aligned_cols=37 Identities=16% Similarity=0.322 Sum_probs=28.8
Q ss_pred hHHHHHHHhcCCccEEEEcCc-cccccccCCCCEEEEe
Q psy16582 2 DVQTMLSFNRGITNILVATDV-LEEGIDIQSCNLVIKF 38 (109)
Q Consensus 2 r~~~~~~F~~g~~~iLV~T~~-~~~Gldi~~v~~Vi~~ 38 (109)
+.+.++++++|+.+|+|+|.. +...+.+.++++||.-
T Consensus 460 r~~~~~~l~~g~~~IvVgT~~ll~~~~~~~~l~lVVID 497 (780)
T 1gm5_A 460 KEKIKSGLRNGQIDVVIGTHALIQEDVHFKNLGLVIID 497 (780)
T ss_dssp HHHHHHHHHSSCCCEEEECTTHHHHCCCCSCCCEEEEE
T ss_pred HHHHHHHHhcCCCCEEEECHHHHhhhhhccCCceEEec
Confidence 456788889999999999974 3345778889988763
No 78
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=46.15 E-value=8.7 Score=32.26 Aligned_cols=36 Identities=22% Similarity=0.436 Sum_probs=28.1
Q ss_pred hHHHHHHHhcCCccEEEEcC-ccccccccCCCCEEEE
Q psy16582 2 DVQTMLSFNRGITNILVATD-VLEEGIDIQSCNLVIK 37 (109)
Q Consensus 2 r~~~~~~F~~g~~~iLV~T~-~~~~Gldi~~v~~Vi~ 37 (109)
+.+.++.+..|+++|+|+|. .+...+.+.++++||.
T Consensus 695 ~~~~~~~l~~g~~dIvV~T~~ll~~~~~~~~l~lvIi 731 (1151)
T 2eyq_A 695 QTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLIV 731 (1151)
T ss_dssp HHHHHHHHHTTCCSEEEECTHHHHSCCCCSSEEEEEE
T ss_pred HHHHHHHHhcCCCCEEEECHHHHhCCccccccceEEE
Confidence 45677888899999999995 4555677888888775
No 79
>2aif_A Ribosomal protein L7A; high-mobility like protein, transcription factor, structural genomics, structural genomics consortium, SGC; 1.90A {Cryptosporidium parvum} SCOP: d.79.3.1
Probab=28.19 E-value=60 Score=20.08 Aligned_cols=25 Identities=32% Similarity=0.466 Sum_probs=19.7
Q ss_pred HHHHHHHhcCCcc-EEEEcCcccccc
Q psy16582 3 VQTMLSFNRGITN-ILVATDVLEEGI 27 (109)
Q Consensus 3 ~~~~~~F~~g~~~-iLV~T~~~~~Gl 27 (109)
+++.+..++|+.. |++|.|+...++
T Consensus 47 ~~v~kal~~gkaklViiA~D~~~~~~ 72 (135)
T 2aif_A 47 NEATKALNRGIAEIVLLAADAEPLEI 72 (135)
T ss_dssp HHHHHHHHTTCEEEEEEETTCSCHHH
T ss_pred HHHHHHHHcCCCeEEEEecCCChHHH
Confidence 4678888999988 558999987654
No 80
>2im9_A Hypothetical protein; structural genomics, PSI-2, protein ST initiative, NEW YORK SGX research center for structural GEN nysgxrc; 1.67A {Legionella pneumophila subsp} SCOP: d.3.1.13
Probab=27.75 E-value=14 Score=26.98 Aligned_cols=36 Identities=11% Similarity=0.221 Sum_probs=24.6
Q ss_pred HHHHHHhcCCccEEEEcC-----ccccccccCCCCEEEEeC
Q psy16582 4 QTMLSFNRGITNILVATD-----VLEEGIDIQSCNLVIKFD 39 (109)
Q Consensus 4 ~~~~~F~~g~~~iLV~T~-----~~~~Gldi~~v~~Vi~~d 39 (109)
.++..+++|.+=-+++.+ ..+.|+|+.++.++|..+
T Consensus 236 ~~~~~I~~GDII~I~t~~~~l~~~ig~GLDVsHvGiai~~~ 276 (333)
T 2im9_A 236 HLFSQIPNGAVIEIIRPNWDLRQQIGTELDISHLGFAIWIN 276 (333)
T ss_dssp HHHTTSCTTCEEEEEEEEECCHHHHSSCEEEEEEEEEEEET
T ss_pred HHHhhCCCCCEEEEEecCccccccccCCCcceEEEEEEEEC
Confidence 355667788765555432 344799999999998743
No 81
>3o85_A Ribosomal protein L7AE; alpha beta sandwich fold, K-turn RNA binding protein, KINK T ribosomal protein; 1.81A {Giardia lamblia}
Probab=27.33 E-value=1.1e+02 Score=18.55 Aligned_cols=24 Identities=21% Similarity=0.340 Sum_probs=18.6
Q ss_pred HHHHHHHhcCCcc-EEEEcCccccc
Q psy16582 3 VQTMLSFNRGITN-ILVATDVLEEG 26 (109)
Q Consensus 3 ~~~~~~F~~g~~~-iLV~T~~~~~G 26 (109)
+++.+..++|+.. |++|.|+-...
T Consensus 37 ~~v~kai~~gka~lViiA~D~~p~~ 61 (122)
T 3o85_A 37 NEALKQVNRGKAELVIIAADADPIE 61 (122)
T ss_dssp HHHHHHHHTTCCSEEEEETTCSSGG
T ss_pred HHHHHHHHcCCceEEEEeCCCChHH
Confidence 4678888999888 56899887654
No 82
>2jnb_A NHP2-like protein 1; splicing, KINK-turn RNA-binding protein, NHPX, RNA binding protein; NMR {Homo sapiens} SCOP: d.79.3.1
Probab=26.78 E-value=17 Score=23.07 Aligned_cols=22 Identities=32% Similarity=0.520 Sum_probs=17.4
Q ss_pred HHHHHHHhcCCcc-EEEEcCccc
Q psy16582 3 VQTMLSFNRGITN-ILVATDVLE 24 (109)
Q Consensus 3 ~~~~~~F~~g~~~-iLV~T~~~~ 24 (109)
+++.+..++|+.+ |+||.|+-.
T Consensus 56 kev~KaI~~gkakLVIIA~D~~p 78 (144)
T 2jnb_A 56 NEATKTLNRGISEFIVMAADAEP 78 (144)
T ss_dssp HHHHHHHHHTCEEEEEEETTCSC
T ss_pred HHHHHHHHhCCCeEEEEeCCCCH
Confidence 4678888999988 558888865
No 83
>3pnu_A Dihydroorotase; TIM barrel, zinc binding, hydrolase, structu genomics, center for structural genomics of infectious DISE csgid; HET: KCX; 2.40A {Campylobacter jejuni subsp}
Probab=24.53 E-value=49 Score=23.90 Aligned_cols=27 Identities=11% Similarity=0.048 Sum_probs=21.7
Q ss_pred hHHHHHHHhcCCccEEEEcCccccccc
Q psy16582 2 DVQTMLSFNRGITNILVATDVLEEGID 28 (109)
Q Consensus 2 r~~~~~~F~~g~~~iLV~T~~~~~Gld 28 (109)
|+..++.+++|.+++.|+||-+.--.+
T Consensus 242 r~aL~~al~dG~id~~iaTDHaPh~~~ 268 (359)
T 3pnu_A 242 KEALCELAFSGYEKVMFGSDSAPHPKD 268 (359)
T ss_dssp HHHHHHHHHTTCTTEEECCCBCCCBC-
T ss_pred HHHHHHHHhcCCCCEEEecCCCCCCHH
Confidence 677889999999998899998754443
No 84
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=22.43 E-value=39 Score=22.21 Aligned_cols=30 Identities=13% Similarity=0.211 Sum_probs=15.8
Q ss_pred HHhcCCccEEEEcC-----cccc-ccccCCCCEEEE
Q psy16582 8 SFNRGITNILVATD-----VLEE-GIDIQSCNLVIK 37 (109)
Q Consensus 8 ~F~~g~~~iLV~T~-----~~~~-Gldi~~v~~Vi~ 37 (109)
.+..+..+|+|+|. .+.+ .++..++++||.
T Consensus 144 ~l~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~lVi 179 (237)
T 3bor_A 144 KLQAEAPHIVVGTPGRVFDMLNRRYLSPKWIKMFVL 179 (237)
T ss_dssp ----CCCSEEEECHHHHHHHHHTTSSCSTTCCEEEE
T ss_pred HHhcCCCCEEEECHHHHHHHHHhCCcCcccCcEEEE
Confidence 33445578888883 2222 345666777664
No 85
>2z26_A Dihydroorotase, dhoase; TIM barrel, hydrolase; HET: KCX DOR NCD; 1.29A {Escherichia coli} PDB: 2z24_A* 2z25_A* 2eg6_A* 1xge_A* 2eg7_A* 2eg8_A* 2z27_A* 2e25_A* 2z28_A* 2z29_A* 3mjm_A* 2z2a_A* 1j79_A* 2z2b_A* 3ihn_A* 3jze_A*
Probab=22.28 E-value=58 Score=22.99 Aligned_cols=23 Identities=13% Similarity=0.164 Sum_probs=19.7
Q ss_pred hHHHHHHHhcCCccEEEEcCccc
Q psy16582 2 DVQTMLSFNRGITNILVATDVLE 24 (109)
Q Consensus 2 r~~~~~~F~~g~~~iLV~T~~~~ 24 (109)
|+..++.+++|.++++|+||-+.
T Consensus 231 ~~aL~~~l~~G~id~~i~SDhaP 253 (347)
T 2z26_A 231 QQALRELVASGFNRVFLGTDSAP 253 (347)
T ss_dssp HHHHHHHHHTTCTTEEECCCBCC
T ss_pred HHHHHHHHhcCCCCeEEecCCCC
Confidence 56788899999999999999853
Done!